Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040250.t1 | XP_003622292.1 | 99.2 | 265 | 2 | 0 | 1 | 265 | 8 | 272 | 3.00E-152 | 548.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040250.t1 | Q6DEY3 | 47.5 | 263 | 125 | 6 | 1 | 252 | 22 | 282 | 3.8e-63 | 243.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040250.t1 | Q2HUX9 | 99.2 | 265 | 2 | 0 | 1 | 265 | 8 | 272 | 2.2e-152 | 548.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene022408 | MS.gene040250 | PPI |
| MS.gene040250 | MS.gene76004 | PPI |
| MS.gene61996 | MS.gene040250 | PPI |
| MS.gene78717 | MS.gene040250 | PPI |
| MS.gene44751 | MS.gene040250 | PPI |
| MS.gene022013 | MS.gene040250 | PPI |
| MS.gene052632 | MS.gene040250 | PPI |
| MS.gene29080 | MS.gene040250 | PPI |
| MS.gene70715 | MS.gene040250 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040250.t1 | MTR_7g032640 | 99.174 | 363 | 3 | 0 | 1 | 363 | 8 | 370 | 0.0 | 748 |
| MS.gene040250.t1 | MTR_3g075410 | 75.806 | 372 | 80 | 2 | 1 | 362 | 8 | 379 | 0.0 | 590 |
| MS.gene040250.t1 | MTR_7g017430 | 65.027 | 366 | 104 | 2 | 1 | 357 | 8 | 358 | 4.56e-173 | 486 |
| MS.gene040250.t1 | MTR_6g018930 | 56.510 | 361 | 112 | 4 | 1 | 331 | 8 | 353 | 9.88e-144 | 411 |
| MS.gene040250.t1 | MTR_8g037335 | 62.030 | 266 | 96 | 2 | 1 | 261 | 8 | 273 | 4.02e-118 | 345 |
| MS.gene040250.t1 | MTR_5g029210 | 62.030 | 266 | 96 | 2 | 1 | 261 | 8 | 273 | 4.03e-116 | 343 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040250.t1 | AT5G14390 | 75.741 | 371 | 71 | 6 | 1 | 362 | 8 | 368 | 0.0 | 565 |
| MS.gene040250.t1 | AT3G01690 | 76.309 | 363 | 75 | 4 | 1 | 362 | 8 | 360 | 0.0 | 560 |
| MS.gene040250.t1 | AT4G24760 | 71.233 | 365 | 93 | 6 | 1 | 362 | 8 | 363 | 0.0 | 527 |
| MS.gene040250.t1 | AT3G30380 | 63.462 | 364 | 116 | 5 | 1 | 360 | 8 | 358 | 7.74e-167 | 471 |
| MS.gene040250.t1 | AT3G30380 | 64.167 | 360 | 112 | 5 | 1 | 356 | 8 | 354 | 2.54e-166 | 470 |
| MS.gene040250.t1 | AT5G38220 | 61.755 | 319 | 108 | 3 | 1 | 307 | 8 | 324 | 4.41e-147 | 419 |
| MS.gene040250.t1 | AT5G38220 | 61.755 | 319 | 108 | 3 | 1 | 307 | 8 | 324 | 4.41e-147 | 419 |
| MS.gene040250.t1 | AT1G66900 | 67.939 | 262 | 83 | 1 | 1 | 261 | 8 | 269 | 9.03e-136 | 388 |
| MS.gene040250.t1 | AT4G31020 | 67.188 | 256 | 84 | 0 | 1 | 256 | 8 | 263 | 8.56e-131 | 376 |
| MS.gene040250.t1 | AT4G31020 | 67.188 | 256 | 84 | 0 | 1 | 256 | 8 | 263 | 8.56e-131 | 376 |
| MS.gene040250.t1 | AT1G13610 | 53.514 | 370 | 118 | 8 | 1 | 362 | 8 | 331 | 2.18e-128 | 372 |
| MS.gene040250.t1 | AT2G24320 | 62.500 | 256 | 95 | 1 | 1 | 256 | 8 | 262 | 5.75e-125 | 361 |
| MS.gene040250.t1 | AT2G24320 | 62.500 | 256 | 95 | 1 | 1 | 256 | 1 | 255 | 1.00e-124 | 360 |
| MS.gene040250.t1 | AT1G32190 | 56.506 | 269 | 108 | 1 | 1 | 260 | 8 | 276 | 2.86e-109 | 326 |
| MS.gene040250.t1 | AT5G38220 | 68.657 | 201 | 61 | 1 | 1 | 201 | 8 | 206 | 4.67e-103 | 303 |
| MS.gene040250.t1 | AT1G13610 | 50.617 | 243 | 95 | 3 | 108 | 335 | 18 | 250 | 2.32e-77 | 239 |
| MS.gene040250.t1 | AT1G32190 | 60.390 | 154 | 61 | 0 | 107 | 260 | 38 | 191 | 5.94e-64 | 207 |
Find 70 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCACAGTCCAATACTTTC+TGG | 0.217252 | 7.1:+65317812 | MS.gene040250:CDS |
| TCATGGTAACGCTGCTGATC+TGG | 0.228996 | 7.1:+65315950 | MS.gene040250:CDS |
| TGTTGCAGGTATGATTATTC+TGG | 0.230487 | 7.1:+65317509 | MS.gene040250:intron |
| GTCCAATACTTTCTGGCTTA+AGG | 0.292115 | 7.1:+65317819 | MS.gene040250:CDS |
| AACCAGTATGAACGCTTTAC+TGG | 0.303616 | 7.1:-65317851 | None:intergenic |
| CAAGAAGATATAATCCTTTA+CGG | 0.308045 | 7.1:+65317722 | MS.gene040250:CDS |
| GTTGATCATCAATTAGAAAA+AGG | 0.324209 | 7.1:+65318999 | MS.gene040250:CDS |
| TTGACCGACTCGACAGAATA+AGG | 0.327499 | 7.1:+65319033 | MS.gene040250:CDS |
| TCCAATACTTTCTGGCTTAA+GGG | 0.333040 | 7.1:+65317820 | MS.gene040250:CDS |
| ATACTGGTTTGACATATATA+AGG | 0.371998 | 7.1:+65317865 | MS.gene040250:CDS |
| AAATGTCTCGAAGAAAGTTT+TGG | 0.379705 | 7.1:+65317692 | MS.gene040250:CDS |
| AGTTTGTATGATGGTGGGTT+TGG | 0.380408 | 7.1:-65315777 | None:intergenic |
| GTTCCCACGGTAAGCAACTC+TGG | 0.399048 | 7.1:+65318601 | MS.gene040250:CDS |
| CTAATCAAAGATGATTTAAC+AGG | 0.400554 | 7.1:+65315798 | MS.gene040250:CDS |
| GGTTTGTCTGTGCTCTTCCT+TGG | 0.400736 | 7.1:-65318852 | None:intergenic |
| TGTTGGAAGTGGCCCGACTT+TGG | 0.409126 | 7.1:+65317751 | MS.gene040250:CDS |
| AGCTCTTTCCCGAGTACATA+AGG | 0.413590 | 7.1:+65318685 | MS.gene040250:CDS |
| CTTCAGATGCCTTATGTACT+CGG | 0.422463 | 7.1:-65318694 | None:intergenic |
| GTTGCAGGTATGATTATTCT+GGG | 0.427239 | 7.1:+65317510 | MS.gene040250:intron |
| AAAACATCTGTACTCTTTCG+AGG | 0.434475 | 7.1:-65318792 | None:intergenic |
| TTGTATGATGGTGGGTTTGG+TGG | 0.435014 | 7.1:-65315774 | None:intergenic |
| CCACTTGCGTGTTAATCTCA+TGG | 0.442917 | 7.1:+65316007 | MS.gene040250:CDS |
| TCAACTCTTCTTTACTCTCA+TGG | 0.456071 | 7.1:+65315933 | MS.gene040250:CDS |
| TTGATTAGTTTGTATGATGG+TGG | 0.458180 | 7.1:-65315783 | None:intergenic |
| CTTACATGAACTATGAGAAC+TGG | 0.461132 | 7.1:-65318001 | None:intergenic |
| ATCCAGTAAAGCGTTCATAC+TGG | 0.462552 | 7.1:+65317849 | MS.gene040250:CDS |
| CATGGTAACGCTGCTGATCT+GGG | 0.462664 | 7.1:+65315951 | MS.gene040250:CDS |
| TCTTTCGAGGCTGCTCAAAC+TGG | 0.480744 | 7.1:-65318779 | None:intergenic |
| CACTTGCGTGTTAATCTCAT+GGG | 0.483122 | 7.1:+65316008 | MS.gene040250:CDS |
| TGATTAGTTTGTATGATGGT+GGG | 0.484762 | 7.1:-65315782 | None:intergenic |
| TCTGGGTACGGACAGTCGTC+AGG | 0.495232 | 7.1:+65317527 | MS.gene040250:CDS |
| CAAACTGGTCTGTACTCCTT+CGG | 0.496493 | 7.1:-65318764 | None:intergenic |
| ATCCTTTACGGACAATCTGT+TGG | 0.497874 | 7.1:+65317734 | MS.gene040250:CDS |
| ACCCTTAAGCCAGAAAGTAT+TGG | 0.501968 | 7.1:-65317821 | None:intergenic |
| TACGGACAATCTGTTGGAAG+TGG | 0.524349 | 7.1:+65317740 | MS.gene040250:CDS |
| TTCAGATGCCTTATGTACTC+GGG | 0.527427 | 7.1:-65318693 | None:intergenic |
| CGACTTTGGATCTTGCAGCT+AGG | 0.528104 | 7.1:+65317765 | MS.gene040250:CDS |
| TCTTTGATTAGTTTGTATGA+TGG | 0.531059 | 7.1:-65315786 | None:intergenic |
| GAATATGTATTCTGCTCACT+TGG | 0.534786 | 7.1:-65317650 | None:intergenic |
| TAGCTGCAAGATCCAAAGTC+GGG | 0.536628 | 7.1:-65317763 | None:intergenic |
| AGGTATGATTATTCTGGGTA+CGG | 0.542672 | 7.1:+65317515 | MS.gene040250:intron |
| AGAAGAGTTGAAGTAGCCAT+TGG | 0.544121 | 7.1:-65315921 | None:intergenic |
| TTGATCATAAAGAGAGATCT+CGG | 0.544423 | 7.1:+65318940 | MS.gene040250:CDS |
| AAAACAACAGCTCGTAATTG+AGG | 0.546917 | 7.1:-65317791 | None:intergenic |
| TTCCAACAGATTGTCCGTAA+AGG | 0.559246 | 7.1:-65317736 | None:intergenic |
| TACGAACCACTGTGGCTCAA+AGG | 0.565306 | 7.1:+65318642 | MS.gene040250:CDS |
| TGTTTATGTTCGTCATCCAA+TGG | 0.571569 | 7.1:+65315905 | MS.gene040250:CDS |
| TTCCCAGAGTTGCTTACCGT+GGG | 0.572357 | 7.1:-65318604 | None:intergenic |
| GAGCACAGACAAACCAGAGA+AGG | 0.574334 | 7.1:+65318860 | MS.gene040250:CDS |
| AACTCGTCTTCTAGTAATGG+TGG | 0.577907 | 7.1:+65318888 | MS.gene040250:CDS |
| TTCCCACGGTAAGCAACTCT+GGG | 0.578420 | 7.1:+65318602 | MS.gene040250:CDS |
| TAGTAATGGTGGTGATATGT+TGG | 0.589614 | 7.1:+65318899 | MS.gene040250:CDS |
| ATGAAACTTTCGACGCGTCG+AGG | 0.590434 | 7.1:+65315867 | MS.gene040250:CDS |
| GAAGTTGTAGATTGTTCCCA+CGG | 0.597143 | 7.1:+65318588 | MS.gene040250:CDS |
| CCATGAGATTAACACGCAAG+TGG | 0.613463 | 7.1:-65316007 | None:intergenic |
| CGCAAAGATACAGTTTCCGA+AGG | 0.613831 | 7.1:+65318748 | MS.gene040250:CDS |
| CGGAAACTGTATCTTTGCGA+CGG | 0.615327 | 7.1:-65318744 | None:intergenic |
| CTAGCTGCAAGATCCAAAGT+CGG | 0.626114 | 7.1:-65317764 | None:intergenic |
| GTTCCCAGAGTTGCTTACCG+TGG | 0.632356 | 7.1:-65318605 | None:intergenic |
| GTACGGACAGTCGTCAGGAA+AGG | 0.635204 | 7.1:+65317532 | MS.gene040250:CDS |
| CAGTCCTTATTCTGTCGAGT+CGG | 0.637149 | 7.1:-65319037 | None:intergenic |
| CTGATCGTAGAGAAAAGCCA+AGG | 0.642341 | 7.1:+65318835 | MS.gene040250:CDS |
| CGACTCGACAGAATAAGGAC+TGG | 0.649791 | 7.1:+65319038 | MS.gene040250:CDS |
| AGAACTGGACAATTAACTAG+TGG | 0.652581 | 7.1:-65317986 | None:intergenic |
| GAATACATATTCAGATATCG+AGG | 0.657030 | 7.1:+65317661 | MS.gene040250:CDS |
| TTACCTCCTTTGAGCCACAG+TGG | 0.679149 | 7.1:-65318648 | None:intergenic |
| GAACCACTGTGGCTCAAAGG+AGG | 0.681241 | 7.1:+65318645 | MS.gene040250:CDS |
| ACTTGCGTGTTAATCTCATG+GGG | 0.715195 | 7.1:+65316009 | MS.gene040250:CDS |
| GAAAGAGCTCTAAATCGCAG+TGG | 0.717582 | 7.1:-65318671 | None:intergenic |
| AAGAGAAATACGAACCACTG+TGG | 0.749682 | 7.1:+65318634 | MS.gene040250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAATAACTTATACAT+AGG | - | chr7.1:65316617-65316636 | None:intergenic | 10.0% |
| !!! | AACTAAAAAATGTTTTTTTT+TGG | + | chr7.1:65317034-65317053 | MS.gene040250:intron | 10.0% |
| !!! | ACTAAAAAATGTTTTTTTTT+GGG | + | chr7.1:65317035-65317054 | MS.gene040250:intron | 10.0% |
| !!! | TATGTAAAATTTTCTTTTTT+TGG | + | chr7.1:65316132-65316151 | MS.gene040250:intron | 10.0% |
| !! | TGAATTTAGTCAAAAAAATA+CGG | - | chr7.1:65318300-65318319 | None:intergenic | 15.0% |
| !!! | AATTTTCTTTTTTTGGTTTT+TGG | + | chr7.1:65316139-65316158 | MS.gene040250:intron | 15.0% |
| !!! | TCATTTCATTTTGAATATTT+GGG | + | chr7.1:65318238-65318257 | MS.gene040250:intron | 15.0% |
| !!! | TTCATTTCATTTTGAATATT+TGG | + | chr7.1:65318237-65318256 | MS.gene040250:intron | 15.0% |
| !!! | TTTTGGAATTTGAAATTTAT+AGG | + | chr7.1:65316097-65316116 | MS.gene040250:intron | 15.0% |
| !! | CAATACTTCATTACAAAAAT+CGG | - | chr7.1:65317089-65317108 | None:intergenic | 20.0% |
| !! | CATAAAATAAATAAGTCGTT+TGG | - | chr7.1:65316414-65316433 | None:intergenic | 20.0% |
| !! | TCATCTATCAAATATATGTA+TGG | - | chr7.1:65317607-65317626 | None:intergenic | 20.0% |
| !!! | TAATGAAGTATTGAATTTGA+AGG | + | chr7.1:65317096-65317115 | MS.gene040250:intron | 20.0% |
| !!! | TGTCAATATTTTTGTTGTAA+CGG | + | chr7.1:65318519-65318538 | MS.gene040250:intron | 20.0% |
| !!! | TTGAAAATTTTGCTTCATTT+TGG | + | chr7.1:65316465-65316484 | MS.gene040250:intron | 20.0% |
| !!! | TTTTTTTTCATAAGCTATCA+TGG | + | chr7.1:65316290-65316309 | MS.gene040250:intron | 20.0% |
| ! | AAAATCAATAGAAAGGAAAC+TGG | - | chr7.1:65318194-65318213 | None:intergenic | 25.0% |
| ! | AATGACATGAAAGATATAGT+TGG | - | chr7.1:65318551-65318570 | None:intergenic | 25.0% |
| ! | ATATTCTGCATATATGAACA+CGG | - | chr7.1:65317956-65317975 | None:intergenic | 25.0% |
| ! | ATCATCAATTAGAAAAAGGA+AGG | + | chr7.1:65319003-65319022 | MS.gene040250:CDS | 25.0% |
| ! | CAAACATGTTTATTATGCTA+TGG | + | chr7.1:65318031-65318050 | MS.gene040250:intron | 25.0% |
| ! | CAAGAAGATATAATCCTTTA+CGG | + | chr7.1:65317722-65317741 | MS.gene040250:CDS | 25.0% |
| ! | CTAATCAAAGATGATTTAAC+AGG | + | chr7.1:65315798-65315817 | MS.gene040250:CDS | 25.0% |
| ! | GTTGATCATCAATTAGAAAA+AGG | + | chr7.1:65318999-65319018 | MS.gene040250:CDS | 25.0% |
| ! | TCTCATTAGATTAAGGAATT+AGG | - | chr7.1:65317928-65317947 | None:intergenic | 25.0% |
| !! | ATATCTTTCATGTCATTTGT+AGG | + | chr7.1:65318554-65318573 | MS.gene040250:intron | 25.0% |
| !! | TATCTTTCATGTCATTTGTA+GGG | + | chr7.1:65318555-65318574 | MS.gene040250:intron | 25.0% |
| !!! | AAGTATTGAATTTGAAGGTA+TGG | + | chr7.1:65317101-65317120 | MS.gene040250:intron | 25.0% |
| !!! | ATACTGGTTTGACATATATA+AGG | + | chr7.1:65317865-65317884 | MS.gene040250:CDS | 25.0% |
| !!! | TATCTCTTTCAAGTAGTTTT+TGG | + | chr7.1:65316048-65316067 | MS.gene040250:intron | 25.0% |
| !!! | TCATTTTGGTTTTTGGTTTT+TGG | + | chr7.1:65316479-65316498 | MS.gene040250:intron | 25.0% |
| !!! | TCCTTTCTATTGATTTTCTT+TGG | + | chr7.1:65318197-65318216 | MS.gene040250:intron | 25.0% |
| !!! | TCTTTGATTAGTTTGTATGA+TGG | - | chr7.1:65315789-65315808 | None:intergenic | 25.0% |
| !!! | TGATTTGGAATTTTGAGAAA+TGG | + | chr7.1:65316547-65316566 | MS.gene040250:intron | 25.0% |
| !!! | TTTTGCTTCATTTTGGTTTT+TGG | + | chr7.1:65316472-65316491 | MS.gene040250:intron | 25.0% |
| !!! | TTTTTTTGGTTTTTGGTTTC+TGG | + | chr7.1:65316146-65316165 | MS.gene040250:intron | 25.0% |
| AAAAACTCGTCTTCTAGTAA+TGG | + | chr7.1:65318885-65318904 | MS.gene040250:CDS | 30.0% | |
| ACCTGAACAAAACTAGAAAA+TGG | + | chr7.1:65316770-65316789 | MS.gene040250:intron | 30.0% | |
| AGAAGAGTCTAAAAAATGGT+AGG | - | chr7.1:65318395-65318414 | None:intergenic | 30.0% | |
| AGTCAAAAAAATACGGATCT+TGG | - | chr7.1:65318293-65318312 | None:intergenic | 30.0% | |
| CATTGTTTGAATTGTGTTGT+TGG | + | chr7.1:65317140-65317159 | MS.gene040250:intron | 30.0% | |
| CCTGAACAAAACTAGAAAAT+GGG | + | chr7.1:65316771-65316790 | MS.gene040250:intron | 30.0% | |
| CTGAACAAAACTAGAAAATG+GGG | + | chr7.1:65316772-65316791 | MS.gene040250:intron | 30.0% | |
| GAATACATATTCAGATATCG+AGG | + | chr7.1:65317661-65317680 | MS.gene040250:CDS | 30.0% | |
| GAGTTTATATACTGACAAAC+AGG | - | chr7.1:65316994-65317013 | None:intergenic | 30.0% | |
| GCCAAAGAAAATCAATAGAA+AGG | - | chr7.1:65318201-65318220 | None:intergenic | 30.0% | |
| GTGAAGAAGAGTCTAAAAAA+TGG | - | chr7.1:65318399-65318418 | None:intergenic | 30.0% | |
| GTGATAACTTGAACTTCAAA+TGG | - | chr7.1:65318491-65318510 | None:intergenic | 30.0% | |
| TATTCTGCATATATGAACAC+GGG | - | chr7.1:65317955-65317974 | None:intergenic | 30.0% | |
| TTGATCATAAAGAGAGATCT+CGG | + | chr7.1:65318940-65318959 | MS.gene040250:CDS | 30.0% | |
| ! | AAATGTCTCGAAGAAAGTTT+TGG | + | chr7.1:65317692-65317711 | MS.gene040250:CDS | 30.0% |
| ! | AATTGTGTTGTTGGATTTCA+TGG | + | chr7.1:65317149-65317168 | MS.gene040250:intron | 30.0% |
| ! | TACTGTGTTTTGTAAGTGAT+TGG | + | chr7.1:65316571-65316590 | MS.gene040250:intron | 30.0% |
| ! | TCATAATCTCAACGTTTTCA+CGG | - | chr7.1:65315851-65315870 | None:intergenic | 30.0% |
| ! | TTTTGCATAGACATAACTTC+TGG | + | chr7.1:65318077-65318096 | MS.gene040250:intron | 30.0% |
| !! | GCTAAGTTATAATTTGTTGC+AGG | + | chr7.1:65317495-65317514 | MS.gene040250:intron | 30.0% |
| !! | TGATTAGTTTGTATGATGGT+GGG | - | chr7.1:65315785-65315804 | None:intergenic | 30.0% |
| !! | TTGATTAGTTTGTATGATGG+TGG | - | chr7.1:65315786-65315805 | None:intergenic | 30.0% |
| !!! | GGTTTTTGGTTTTTGGTTTT+GGG | + | chr7.1:65316486-65316505 | MS.gene040250:intron | 30.0% |
| !!! | TCTGACATATTTGTTTTGTC+TGG | + | chr7.1:65318116-65318135 | MS.gene040250:intron | 30.0% |
| !!! | TGGTATTGATGCTATTTTCA+AGG | + | chr7.1:65317175-65317194 | MS.gene040250:intron | 30.0% |
| !!! | TGGTTTTTGGTTTTTGGTTT+TGG | + | chr7.1:65316485-65316504 | MS.gene040250:intron | 30.0% |
| !!! | TTTTTTTTTCTTGACACCCT+TGG | + | chr7.1:65318167-65318186 | MS.gene040250:intron | 30.0% |
| AAAACAACAGCTCGTAATTG+AGG | - | chr7.1:65317794-65317813 | None:intergenic | 35.0% | |
| AAAACATCTGTACTCTTTCG+AGG | - | chr7.1:65318795-65318814 | None:intergenic | 35.0% | |
| AGAACTGGACAATTAACTAG+TGG | - | chr7.1:65317989-65318008 | None:intergenic | 35.0% | |
| AGGTATGATTATTCTGGGTA+CGG | + | chr7.1:65317515-65317534 | MS.gene040250:intron | 35.0% | |
| AGTGTTCTCATAAGCTATTG+TGG | + | chr7.1:65316881-65316900 | MS.gene040250:intron | 35.0% | |
| ATGTGACGTGAACATAAACT+TGG | - | chr7.1:65317296-65317315 | None:intergenic | 35.0% | |
| ATTGTTCTTGTAAGCTATCG+TGG | + | chr7.1:65316681-65316700 | MS.gene040250:intron | 35.0% | |
| CAAGTAGTGTAACAAAGGAT+AGG | - | chr7.1:65318421-65318440 | None:intergenic | 35.0% | |
| CTTACATGAACTATGAGAAC+TGG | - | chr7.1:65318004-65318023 | None:intergenic | 35.0% | |
| GAATATGTATTCTGCTCACT+TGG | - | chr7.1:65317653-65317672 | None:intergenic | 35.0% | |
| GCAAACAAGTAGTGTAACAA+AGG | - | chr7.1:65318426-65318445 | None:intergenic | 35.0% | |
| GTTGCAGGTATGATTATTCT+GGG | + | chr7.1:65317510-65317529 | MS.gene040250:intron | 35.0% | |
| GTTGTTGGATTTCATGGAAT+TGG | + | chr7.1:65317155-65317174 | MS.gene040250:intron | 35.0% | |
| TCAACTCTTCTTTACTCTCA+TGG | + | chr7.1:65315933-65315952 | MS.gene040250:CDS | 35.0% | |
| TGAAATAGTCAAATCGTGCT+TGG | - | chr7.1:65318349-65318368 | None:intergenic | 35.0% | |
| TGTTGCAGGTATGATTATTC+TGG | + | chr7.1:65317509-65317528 | MS.gene040250:intron | 35.0% | |
| TGTTTATGTTCGTCATCCAA+TGG | + | chr7.1:65315905-65315924 | MS.gene040250:CDS | 35.0% | |
| TTCATTACAAAAATCGGACG+TGG | - | chr7.1:65317083-65317102 | None:intergenic | 35.0% | |
| ! | CCAGAAATTTTCATCACGAA+GGG | - | chr7.1:65317383-65317402 | None:intergenic | 35.0% |
| ! | TAGTAATGGTGGTGATATGT+TGG | + | chr7.1:65318899-65318918 | MS.gene040250:CDS | 35.0% |
| ! | TCCAGAAATTTTCATCACGA+AGG | - | chr7.1:65317384-65317403 | None:intergenic | 35.0% |
| ! | TGTTGTTGTGCTTTTCGTTT+TGG | + | chr7.1:65316080-65316099 | MS.gene040250:intron | 35.0% |
| !! | TCCAATACTTTCTGGCTTAA+GGG | + | chr7.1:65317820-65317839 | MS.gene040250:CDS | 35.0% |
| !!! | CATTTCGCTTGTATCGATTT+TGG | - | chr7.1:65318461-65318480 | None:intergenic | 35.0% |
| !!! | CCCATTTTCTAGTTTTGTTC+AGG | - | chr7.1:65316774-65316793 | None:intergenic | 35.0% |
| AACCAGTATGAACGCTTTAC+TGG | - | chr7.1:65317854-65317873 | None:intergenic | 40.0% | |
| AACTCGTCTTCTAGTAATGG+TGG | + | chr7.1:65318888-65318907 | MS.gene040250:CDS | 40.0% | |
| AAGAGAAATACGAACCACTG+TGG | + | chr7.1:65318634-65318653 | MS.gene040250:CDS | 40.0% | |
| ACTTGCGTGTTAATCTCATG+GGG | + | chr7.1:65316009-65316028 | MS.gene040250:CDS | 40.0% | |
| AGAAGAGTTGAAGTAGCCAT+TGG | - | chr7.1:65315924-65315943 | None:intergenic | 40.0% | |
| AGTGCGAAATGAGGATTTGT+GGG | + | chr7.1:65316524-65316543 | MS.gene040250:intron | 40.0% | |
| ATAGAAAGGAAACTGGACCA+AGG | - | chr7.1:65318187-65318206 | None:intergenic | 40.0% | |
| ATATACTGACAAACAGGTGC+AGG | - | chr7.1:65316988-65317007 | None:intergenic | 40.0% | |
| ATCCTTTACGGACAATCTGT+TGG | + | chr7.1:65317734-65317753 | MS.gene040250:CDS | 40.0% | |
| ATGAGGATTTGTGGGTGATT+TGG | + | chr7.1:65316532-65316551 | MS.gene040250:intron | 40.0% | |
| CACATTAATAACCAGACGAG+AGG | + | chr7.1:65317311-65317330 | MS.gene040250:intron | 40.0% | |
| CACTTGCGTGTTAATCTCAT+GGG | + | chr7.1:65316008-65316027 | MS.gene040250:CDS | 40.0% | |
| CATGGTGAGTACAGAGTTTA+TGG | + | chr7.1:65316308-65316327 | MS.gene040250:intron | 40.0% | |
| CCCTTCGTGATGAAAATTTC+TGG | + | chr7.1:65317380-65317399 | MS.gene040250:intron | 40.0% | |
| CTTCAGATGCCTTATGTACT+CGG | - | chr7.1:65318697-65318716 | None:intergenic | 40.0% | |
| GAAGTTGTAGATTGTTCCCA+CGG | + | chr7.1:65318588-65318607 | MS.gene040250:CDS | 40.0% | |
| TAGAAAGGAAACTGGACCAA+GGG | - | chr7.1:65318186-65318205 | None:intergenic | 40.0% | |
| TGCATTGAGCTCAACTTCAA+AGG | + | chr7.1:65317447-65317466 | MS.gene040250:intron | 40.0% | |
| TTCAGATGCCTTATGTACTC+GGG | - | chr7.1:65318696-65318715 | None:intergenic | 40.0% | |
| TTCCAACAGATTGTCCGTAA+AGG | - | chr7.1:65317739-65317758 | None:intergenic | 40.0% | |
| TTGCACAGTCCAATACTTTC+TGG | + | chr7.1:65317812-65317831 | MS.gene040250:CDS | 40.0% | |
| TTGGACAGACGACAAAATTG+TGG | - | chr7.1:65317277-65317296 | None:intergenic | 40.0% | |
| TTTGCTTAGAGTGCGAAATG+AGG | + | chr7.1:65316515-65316534 | MS.gene040250:intron | 40.0% | |
| ! | ACCCTTAAGCCAGAAAGTAT+TGG | - | chr7.1:65317824-65317843 | None:intergenic | 40.0% |
| ! | ATCCAGTAAAGCGTTCATAC+TGG | + | chr7.1:65317849-65317868 | MS.gene040250:CDS | 40.0% |
| !! | AGTTTGTATGATGGTGGGTT+TGG | - | chr7.1:65315780-65315799 | None:intergenic | 40.0% |
| !! | GGGAGCATCTCATTAGATTA+AGG | - | chr7.1:65317935-65317954 | None:intergenic | 40.0% |
| !! | GTCCAATACTTTCTGGCTTA+AGG | + | chr7.1:65317819-65317838 | MS.gene040250:CDS | 40.0% |
| !!! | GACGAGTTTTTTACCTTCTC+TGG | - | chr7.1:65318876-65318895 | None:intergenic | 40.0% |
| AAACAGGTGCAGGACTGTTT+GGG | - | chr7.1:65316978-65316997 | None:intergenic | 45.0% | |
| AGCTCTTTCCCGAGTACATA+AGG | + | chr7.1:65318685-65318704 | MS.gene040250:CDS | 45.0% | |
| CAAAACGAGTGAGACTGCTT+GGG | - | chr7.1:65316363-65316382 | None:intergenic | 45.0% | |
| CAGTCCTTATTCTGTCGAGT+CGG | - | chr7.1:65319040-65319059 | None:intergenic | 45.0% | |
| CCACTTGCGTGTTAATCTCA+TGG | + | chr7.1:65316007-65316026 | MS.gene040250:CDS | 45.0% | |
| CCATGAGATTAACACGCAAG+TGG | - | chr7.1:65316010-65316029 | None:intergenic | 45.0% | |
| CGCAAAGATACAGTTTCCGA+AGG | + | chr7.1:65318748-65318767 | MS.gene040250:CDS | 45.0% | |
| CGGAAACTGTATCTTTGCGA+CGG | - | chr7.1:65318747-65318766 | None:intergenic | 45.0% | |
| CTAGCTGCAAGATCCAAAGT+CGG | - | chr7.1:65317767-65317786 | None:intergenic | 45.0% | |
| CTGATCGTAGAGAAAAGCCA+AGG | + | chr7.1:65318835-65318854 | MS.gene040250:CDS | 45.0% | |
| GAGTGCGAAATGAGGATTTG+TGG | + | chr7.1:65316523-65316542 | MS.gene040250:intron | 45.0% | |
| GTTCTTGTAAGCTATCGTGG+AGG | + | chr7.1:65316684-65316703 | MS.gene040250:intron | 45.0% | |
| TACGGACAATCTGTTGGAAG+TGG | + | chr7.1:65317740-65317759 | MS.gene040250:CDS | 45.0% | |
| TAGCTGCAAGATCCAAAGTC+GGG | - | chr7.1:65317766-65317785 | None:intergenic | 45.0% | |
| ! | ACGTTTTCACGGTGAGGAAA+TGG | - | chr7.1:65315840-65315859 | None:intergenic | 45.0% |
| ! | ATCTCAACGTTTTCACGGTG+AGG | - | chr7.1:65315846-65315865 | None:intergenic | 45.0% |
| ! | CAAACTGGTCTGTACTCCTT+CGG | - | chr7.1:65318767-65318786 | None:intergenic | 45.0% |
| ! | TGTGGAGACTGAAGAGCTTT+TGG | + | chr7.1:65316899-65316918 | MS.gene040250:intron | 45.0% |
| !! | GAAAGAGCTCTAAATCGCAG+TGG | - | chr7.1:65318674-65318693 | None:intergenic | 45.0% |
| !! | TTGACCGACTCGACAGAATA+AGG | + | chr7.1:65319033-65319052 | MS.gene040250:CDS | 45.0% |
| !! | TTGTATGATGGTGGGTTTGG+TGG | - | chr7.1:65315777-65315796 | None:intergenic | 45.0% |
| !!! | TATATAATATTCTTTTTTTT+TGG | + | chr7.1:65316193-65316212 | MS.gene040250:intron | 5.0% |
| AGCAAGTTACTCCTCTCGTC+TGG | - | chr7.1:65317325-65317344 | None:intergenic | 50.0% | |
| ATGAAACTTTCGACGCGTCG+AGG | + | chr7.1:65315867-65315886 | MS.gene040250:CDS | 50.0% | |
| CAAACAGGTGCAGGACTGTT+TGG | - | chr7.1:65316979-65316998 | None:intergenic | 50.0% | |
| CCAAAACGAGTGAGACTGCT+TGG | - | chr7.1:65316364-65316383 | None:intergenic | 50.0% | |
| CGACTCGACAGAATAAGGAC+TGG | + | chr7.1:65319038-65319057 | MS.gene040250:CDS | 50.0% | |
| CGACTTTGGATCTTGCAGCT+AGG | + | chr7.1:65317765-65317784 | MS.gene040250:CDS | 50.0% | |
| GAGCACAGACAAACCAGAGA+AGG | + | chr7.1:65318860-65318879 | MS.gene040250:CDS | 50.0% | |
| GGTTTGTCTGTGCTCTTCCT+TGG | - | chr7.1:65318855-65318874 | None:intergenic | 50.0% | |
| TACGAACCACTGTGGCTCAA+AGG | + | chr7.1:65318642-65318661 | MS.gene040250:CDS | 50.0% | |
| TCTTTCGAGGCTGCTCAAAC+TGG | - | chr7.1:65318782-65318801 | None:intergenic | 50.0% | |
| TTACCTCCTTTGAGCCACAG+TGG | - | chr7.1:65318651-65318670 | None:intergenic | 50.0% | |
| TTCCCACGGTAAGCAACTCT+GGG | + | chr7.1:65318602-65318621 | MS.gene040250:CDS | 50.0% | |
| TTCCCAGAGTTGCTTACCGT+GGG | - | chr7.1:65318607-65318626 | None:intergenic | 50.0% | |
| ! | CATGGTAACGCTGCTGATCT+GGG | + | chr7.1:65315951-65315970 | MS.gene040250:CDS | 50.0% |
| ! | CCAAGCAGTCTCACTCGTTT+TGG | + | chr7.1:65316361-65316380 | MS.gene040250:intron | 50.0% |
| ! | TCATGGTAACGCTGCTGATC+TGG | + | chr7.1:65315950-65315969 | MS.gene040250:CDS | 50.0% |
| !! | GCAGTCTCACTCGTTTTGGT+CGG | + | chr7.1:65316365-65316384 | MS.gene040250:intron | 50.0% |
| GAACCACTGTGGCTCAAAGG+AGG | + | chr7.1:65318645-65318664 | MS.gene040250:CDS | 55.0% | |
| GTACGGACAGTCGTCAGGAA+AGG | + | chr7.1:65317532-65317551 | MS.gene040250:CDS | 55.0% | |
| GTTCCCACGGTAAGCAACTC+TGG | + | chr7.1:65318601-65318620 | MS.gene040250:CDS | 55.0% | |
| GTTCCCAGAGTTGCTTACCG+TGG | - | chr7.1:65318608-65318627 | None:intergenic | 55.0% | |
| TGTTGGAAGTGGCCCGACTT+TGG | + | chr7.1:65317751-65317770 | MS.gene040250:CDS | 55.0% | |
| TCTGGGTACGGACAGTCGTC+AGG | + | chr7.1:65317527-65317546 | MS.gene040250:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 65315750 | 65319064 | 65315750 | ID=MS.gene040250 |
| chr7.1 | mRNA | 65315750 | 65319064 | 65315750 | ID=MS.gene040250.t1;Parent=MS.gene040250 |
| chr7.1 | exon | 65315750 | 65316030 | 65315750 | ID=MS.gene040250.t1.exon1;Parent=MS.gene040250.t1 |
| chr7.1 | CDS | 65315750 | 65316030 | 65315750 | ID=cds.MS.gene040250.t1;Parent=MS.gene040250.t1 |
| chr7.1 | exon | 65317517 | 65317553 | 65317517 | ID=MS.gene040250.t1.exon2;Parent=MS.gene040250.t1 |
| chr7.1 | CDS | 65317517 | 65317553 | 65317517 | ID=cds.MS.gene040250.t1;Parent=MS.gene040250.t1 |
| chr7.1 | exon | 65317650 | 65317886 | 65317650 | ID=MS.gene040250.t1.exon3;Parent=MS.gene040250.t1 |
| chr7.1 | CDS | 65317650 | 65317886 | 65317650 | ID=cds.MS.gene040250.t1;Parent=MS.gene040250.t1 |
| chr7.1 | exon | 65317971 | 65318018 | 65317971 | ID=MS.gene040250.t1.exon4;Parent=MS.gene040250.t1 |
| chr7.1 | CDS | 65317971 | 65318018 | 65317971 | ID=cds.MS.gene040250.t1;Parent=MS.gene040250.t1 |
| chr7.1 | exon | 65318576 | 65319064 | 65318576 | ID=MS.gene040250.t1.exon5;Parent=MS.gene040250.t1 |
| chr7.1 | CDS | 65318576 | 65319064 | 65318576 | ID=cds.MS.gene040250.t1;Parent=MS.gene040250.t1 |
| Gene Sequence |
| Protein sequence |
