Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78717.t1 | XP_013460975.1 | 86.3 | 284 | 23 | 1 | 8 | 291 | 113 | 380 | 1.30E-105 | 392.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78717.t1 | Q96GS6 | 52.2 | 157 | 71 | 3 | 8 | 163 | 156 | 309 | 1.6e-40 | 167.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78717.t1 | B7FM37 | 86.3 | 284 | 23 | 1 | 8 | 291 | 113 | 380 | 9.4e-106 | 392.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene78717 | 0.813177 | 2.92E-51 | -1.69E-46 |
| MS.gene050499 | MS.gene78717 | 0.80474 | 1.87E-49 | -1.69E-46 |
| MS.gene052632 | MS.gene78717 | 0.900872 | 4.74E-78 | -1.69E-46 |
| MS.gene053633 | MS.gene78717 | 0.802602 | 5.19E-49 | -1.69E-46 |
| MS.gene056549 | MS.gene78717 | 0.809723 | 1.64E-50 | -1.69E-46 |
| MS.gene06026 | MS.gene78717 | -0.804809 | 1.81E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene78717 | 0.816713 | 4.80E-52 | -1.69E-46 |
| MS.gene061134 | MS.gene78717 | 0.836957 | 6.90E-57 | -1.69E-46 |
| MS.gene061171 | MS.gene78717 | 0.806437 | 8.23E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene62602 | MS.gene78717 | PPI |
| MS.gene78717 | MS.gene040250 | PPI |
| MS.gene80865 | MS.gene78717 | PPI |
| MS.gene041293 | MS.gene78717 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78717.t1 | MTR_3g075410 | 92.632 | 285 | 5 | 1 | 7 | 291 | 112 | 380 | 0.0 | 541 |
| MS.gene78717.t1 | MTR_7g032640 | 69.123 | 285 | 62 | 4 | 7 | 291 | 112 | 370 | 1.97e-135 | 388 |
| MS.gene78717.t1 | MTR_7g017430 | 58.719 | 281 | 92 | 4 | 7 | 286 | 112 | 369 | 6.40e-109 | 321 |
| MS.gene78717.t1 | MTR_6g018930 | 57.895 | 247 | 84 | 4 | 7 | 250 | 124 | 353 | 2.65e-92 | 278 |
| MS.gene78717.t1 | MTR_8g037335 | 58.376 | 197 | 77 | 3 | 7 | 201 | 117 | 310 | 8.18e-68 | 214 |
| MS.gene78717.t1 | MTR_5g029210 | 62.011 | 179 | 66 | 2 | 7 | 183 | 117 | 295 | 8.91e-67 | 214 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78717.t1 | AT4G24760 | 63.415 | 287 | 69 | 6 | 7 | 291 | 112 | 364 | 1.46e-121 | 352 |
| MS.gene78717.t1 | AT5G14390 | 61.433 | 293 | 68 | 7 | 7 | 290 | 112 | 368 | 3.71e-113 | 331 |
| MS.gene78717.t1 | AT3G01690 | 60.563 | 284 | 77 | 4 | 7 | 290 | 112 | 360 | 5.84e-111 | 325 |
| MS.gene78717.t1 | AT3G30380 | 56.491 | 285 | 90 | 6 | 7 | 286 | 111 | 366 | 6.50e-103 | 305 |
| MS.gene78717.t1 | AT3G30380 | 58.303 | 271 | 80 | 5 | 7 | 272 | 111 | 353 | 2.41e-102 | 305 |
| MS.gene78717.t1 | AT5G38220 | 58.140 | 215 | 86 | 2 | 7 | 221 | 110 | 320 | 6.82e-86 | 261 |
| MS.gene78717.t1 | AT5G38220 | 58.140 | 215 | 86 | 2 | 7 | 221 | 110 | 320 | 6.82e-86 | 261 |
| MS.gene78717.t1 | AT1G13610 | 60.648 | 216 | 71 | 5 | 7 | 216 | 115 | 322 | 1.90e-80 | 247 |
| MS.gene78717.t1 | AT1G13610 | 61.033 | 213 | 69 | 5 | 10 | 216 | 18 | 222 | 1.04e-79 | 242 |
| MS.gene78717.t1 | AT4G31020 | 63.636 | 176 | 59 | 1 | 7 | 177 | 112 | 287 | 2.04e-78 | 240 |
| MS.gene78717.t1 | AT4G31020 | 63.636 | 176 | 59 | 1 | 7 | 177 | 112 | 287 | 2.04e-78 | 240 |
| MS.gene78717.t1 | AT1G66900 | 68.153 | 157 | 50 | 0 | 7 | 163 | 113 | 269 | 7.29e-78 | 238 |
| MS.gene78717.t1 | AT2G24320 | 61.932 | 176 | 62 | 1 | 7 | 177 | 104 | 279 | 1.03e-77 | 238 |
| MS.gene78717.t1 | AT2G24320 | 61.932 | 176 | 62 | 1 | 7 | 177 | 111 | 286 | 1.10e-77 | 238 |
| MS.gene78717.t1 | AT1G32190 | 62.987 | 154 | 57 | 0 | 9 | 162 | 38 | 191 | 1.83e-67 | 213 |
| MS.gene78717.t1 | AT1G32190 | 62.179 | 156 | 59 | 0 | 7 | 162 | 121 | 276 | 9.77e-67 | 214 |
| MS.gene78717.t1 | AT5G38220 | 75.258 | 97 | 24 | 0 | 7 | 103 | 110 | 206 | 2.46e-48 | 161 |
Find 64 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGAAATACGAGCCTTTA+TGG | 0.179223 | 3.1:+62272927 | MS.gene78717:CDS |
| TTCTTCTAAAACTCAGTCTT+TGG | 0.197920 | 3.1:-62273042 | None:intergenic |
| GCTCCCATGGAAAGCATTTA+TGG | 0.211941 | 3.1:+62272894 | MS.gene78717:CDS |
| CTGAGATGTCTAAGGTATTC+TGG | 0.212636 | 3.1:-62272986 | None:intergenic |
| TCTGTCTTATCAGTACTTCT+TGG | 0.247819 | 3.1:-62273196 | None:intergenic |
| CAGGAAGATATAATCCTTTA+TGG | 0.268151 | 3.1:+62271925 | MS.gene78717:CDS |
| CTGAACATCGACACTTCTTC+TGG | 0.268960 | 3.1:-62273359 | None:intergenic |
| AGATGGAAATCACTGTAATT+TGG | 0.273725 | 3.1:+62272955 | MS.gene78717:CDS |
| CACTTCTTCTGGATTTCTCT+TGG | 0.303385 | 3.1:-62273348 | None:intergenic |
| ACCGCTCCGTCTGGTCAAAT+TGG | 0.322966 | 3.1:-62273279 | None:intergenic |
| CTGTGATCTGTGCTCTTCCT+TGG | 0.329846 | 3.1:-62273163 | None:intergenic |
| CTGTGATCTGTGCTCTTCCT+TGG | 0.342686 | 3.1:-62273115 | None:intergenic |
| ATACTGGTTTGACATCTATA+AGG | 0.350777 | 3.1:+62272068 | MS.gene78717:CDS |
| CTCCATAGTCCTATACTATC+GGG | 0.395584 | 3.1:+62272015 | MS.gene78717:CDS |
| CTTAACTTCTCTAATTTCTC+AGG | 0.396675 | 3.1:-62273253 | None:intergenic |
| TTTCCATCTTTGAGCCATAA+AGG | 0.404459 | 3.1:-62272941 | None:intergenic |
| CTCCCATGGAAAGCATTTAT+GGG | 0.407681 | 3.1:+62272895 | MS.gene78717:CDS |
| CGAACAATCAGTACTTCCTC+TGG | 0.409662 | 3.1:-62273086 | None:intergenic |
| ATCCTTTATGGTCAATCTGT+TGG | 0.416151 | 3.1:+62271937 | MS.gene78717:CDS |
| TCCTTTATGGTCAATCTGTT+GGG | 0.417819 | 3.1:+62271938 | MS.gene78717:CDS |
| TCTTCTAAAACTCAGTCTTT+GGG | 0.420393 | 3.1:-62273041 | None:intergenic |
| TGTTGGGAGTGGTCCTACTT+TGG | 0.422954 | 3.1:+62271954 | MS.gene78717:CDS |
| TTCTTCTTGACCGCTCCGTC+TGG | 0.442109 | 3.1:-62273288 | None:intergenic |
| CAGAGGAAGTACTGATTGTT+CGG | 0.447084 | 3.1:+62273087 | MS.gene78717:CDS |
| ACCCCGATAGTATAGGACTA+TGG | 0.448961 | 3.1:-62272017 | None:intergenic |
| TCTCCATAGTCCTATACTAT+CGG | 0.466854 | 3.1:+62272014 | MS.gene78717:CDS |
| GTCTTATCAGTACTTCTTGG+TGG | 0.469855 | 3.1:-62273193 | None:intergenic |
| AAGTGTCTTGAAGAGAACTA+TGG | 0.478313 | 3.1:+62271895 | MS.gene78717:CDS |
| GCGGAGGAGCATCGACTGGC+TGG | 0.480856 | 3.1:+62273393 | MS.gene78717:CDS |
| TCCCAACAGATTGACCATAA+AGG | 0.485033 | 3.1:-62271939 | None:intergenic |
| ACCCCGTGAAAAGGACATAC+TGG | 0.492094 | 3.1:+62272052 | MS.gene78717:CDS |
| AGAGAACTATGGTGCTAAGC+AGG | 0.495083 | 3.1:+62271906 | MS.gene78717:CDS |
| GAGAACAACAGCCCTCAGTC+GGG | 0.509984 | 3.1:-62271995 | None:intergenic |
| ACTCTCAACCCCGATAGTAT+AGG | 0.512348 | 3.1:-62272024 | None:intergenic |
| CTTACATGAATTACTAGCAC+TGG | 0.512410 | 3.1:-62272209 | None:intergenic |
| GAGGTTGTTGATTGCTCCCA+TGG | 0.513066 | 3.1:+62272881 | MS.gene78717:CDS |
| GAACATTGATAAAATTCCAT+TGG | 0.515486 | 3.1:+62272178 | MS.gene78717:intron |
| TATGGTCAATCTGTTGGGAG+TGG | 0.517208 | 3.1:+62271943 | MS.gene78717:CDS |
| GAGCCTTTATGGCTCAAAGA+TGG | 0.522856 | 3.1:+62272938 | MS.gene78717:CDS |
| GAGTGATGTACCCCGTGAAA+AGG | 0.530450 | 3.1:+62272043 | MS.gene78717:CDS |
| TCTTCAGGGAACTGCTGATG+AGG | 0.536410 | 3.1:+62272862 | MS.gene78717:intron |
| GACCGCGGAGGAGCATCGAC+TGG | 0.544219 | 3.1:+62273389 | MS.gene78717:CDS |
| GCTCCCATAAATGCTTTCCA+TGG | 0.545857 | 3.1:-62272898 | None:intergenic |
| CAGAGGAAGTACTGATTGCT+CGG | 0.546473 | 3.1:+62273135 | MS.gene78717:CDS |
| GGAGAACAACAGCCCTCAGT+CGG | 0.578144 | 3.1:-62271996 | None:intergenic |
| CTCCCATAAATGCTTTCCAT+GGG | 0.578838 | 3.1:-62272897 | None:intergenic |
| TGCTCGATTACCCCGACTGA+GGG | 0.581528 | 3.1:+62271984 | MS.gene78717:CDS |
| CTAAAACTCAGTCTTTGGGA+TGG | 0.593010 | 3.1:-62273037 | None:intergenic |
| AGCACTGGACACTTCACCAA+TGG | 0.598967 | 3.1:-62272194 | None:intergenic |
| TCCAATTTGACCAGACGGAG+CGG | 0.605274 | 3.1:+62273278 | MS.gene78717:CDS |
| AAGAGTCCAATTTGACCAGA+CGG | 0.606214 | 3.1:+62273273 | MS.gene78717:CDS |
| GCATACGTATTATGCTCACT+TGG | 0.606829 | 3.1:-62271853 | None:intergenic |
| CTGATTGCTCGGAAAAGCCA+AGG | 0.613588 | 3.1:+62273146 | MS.gene78717:CDS |
| CTGATTGTTCGGAAAAGCCA+AGG | 0.613774 | 3.1:+62273098 | MS.gene78717:CDS |
| CGAGCAGCAAGATCCAAAGT+AGG | 0.615910 | 3.1:-62271967 | None:intergenic |
| CTGCTCGATTACCCCGACTG+AGG | 0.632658 | 3.1:+62271983 | MS.gene78717:CDS |
| TCTCAGAAAATTCATATCGA+CGG | 0.640818 | 3.1:+62273003 | MS.gene78717:CDS |
| TCCATAGTCCTATACTATCG+GGG | 0.640930 | 3.1:+62272016 | MS.gene78717:CDS |
| AGCCAGTCGATGCTCCTCCG+CGG | 0.675261 | 3.1:-62273391 | None:intergenic |
| AGAACAACAGCCCTCAGTCG+GGG | 0.685237 | 3.1:-62271994 | None:intergenic |
| GATAGGGTTAAACAATCCAG+AGG | 0.687055 | 3.1:+62273070 | MS.gene78717:CDS |
| ATGTTCAGTTTGAGAGACCG+CGG | 0.693193 | 3.1:+62273374 | MS.gene78717:CDS |
| TTCAGTTTGAGAGACCGCGG+AGG | 0.696369 | 3.1:+62273377 | MS.gene78717:CDS |
| AGGAAGAGCACAGATCACAG+AGG | 0.761146 | 3.1:+62273118 | MS.gene78717:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATATTAAAAAAGAAAAA+TGG | + | chr3.1:62272596-62272615 | MS.gene78717:intron | 10.0% |
| !!! | TTTCTTTTTTAATATTACTT+CGG | - | chr3.1:62272594-62272613 | None:intergenic | 10.0% |
| !! | ACAATTAACAATTTCTATAA+TGG | + | chr3.1:62272318-62272337 | MS.gene78717:intron | 15.0% |
| !!! | CTCTAGTTTTTTTTTTTTTT+GGG | + | chr3.1:62272790-62272809 | MS.gene78717:intron | 15.0% |
| !!! | CTTTTATCAACAAAAAAAAA+AGG | - | chr3.1:62272571-62272590 | None:intergenic | 15.0% |
| !!! | TCTCTAGTTTTTTTTTTTTT+TGG | + | chr3.1:62272789-62272808 | MS.gene78717:intron | 15.0% |
| !! | AAAATGGAAACAAAGAAAAT+TGG | + | chr3.1:62272612-62272631 | MS.gene78717:intron | 20.0% |
| !! | AAATGGAAACAAAGAAAATT+GGG | + | chr3.1:62272613-62272632 | MS.gene78717:intron | 20.0% |
| !! | AGATGACAAGAATATAATTT+AGG | - | chr3.1:62272738-62272757 | None:intergenic | 20.0% |
| !! | TTCATATTGCTTTACTAATT+TGG | + | chr3.1:62272823-62272842 | MS.gene78717:intron | 20.0% |
| !!! | AACAATTTCTATAATGGTTT+TGG | + | chr3.1:62272324-62272343 | MS.gene78717:intron | 20.0% |
| !!! | ATCATTCTTATATTTTCTTC+AGG | + | chr3.1:62272847-62272866 | MS.gene78717:intron | 20.0% |
| !!! | TCATTCTTATATTTTCTTCA+GGG | + | chr3.1:62272848-62272867 | MS.gene78717:intron | 20.0% |
| !!! | TGATTTTAAATAACAATGTG+CGG | - | chr3.1:62272423-62272442 | None:intergenic | 20.0% |
| ! | AAAATCGAACAAAATAAGCA+TGG | - | chr3.1:62272239-62272258 | None:intergenic | 25.0% |
| ! | AATGGAAACAAAGAAAATTG+GGG | + | chr3.1:62272614-62272633 | MS.gene78717:intron | 25.0% |
| ! | CATCTTGTGAATATGTAATT+TGG | + | chr3.1:62272753-62272772 | MS.gene78717:intron | 25.0% |
| ! | GAACATTGATAAAATTCCAT+TGG | + | chr3.1:62272178-62272197 | MS.gene78717:intron | 25.0% |
| ! | GACAAGAATATAATTTAGGT+TGG | - | chr3.1:62272734-62272753 | None:intergenic | 25.0% |
| ! | TATGGTGACAAAATATTAGA+TGG | - | chr3.1:62272265-62272284 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTCTTGTTTCACT+GGG | - | chr3.1:62272661-62272680 | None:intergenic | 25.0% |
| AAAGAAAATTGGGGAACAAA+TGG | + | chr3.1:62272623-62272642 | MS.gene78717:intron | 30.0% | |
| AGAAACAAAAAGCTAGAGAA+AGG | + | chr3.1:62272670-62272689 | MS.gene78717:intron | 30.0% | |
| AGATGGAAATCACTGTAATT+TGG | + | chr3.1:62272955-62272974 | MS.gene78717:CDS | 30.0% | |
| AGTTTGGATTAATCTTTGGT+TGG | - | chr3.1:62272697-62272716 | None:intergenic | 30.0% | |
| CAGGAAGATATAATCCTTTA+TGG | + | chr3.1:62271925-62271944 | MS.gene78717:CDS | 30.0% | |
| CTTAACTTCTCTAATTTCTC+AGG | - | chr3.1:62273256-62273275 | None:intergenic | 30.0% | |
| TATTTGATGTCCTTTGCTTT+CGG | + | chr3.1:62272113-62272132 | MS.gene78717:intron | 30.0% | |
| TCTCAGAAAATTCATATCGA+CGG | + | chr3.1:62273003-62273022 | MS.gene78717:CDS | 30.0% | |
| ! | ATAAGCTAGTTTACACAAGT+AGG | + | chr3.1:62272488-62272507 | MS.gene78717:intron | 30.0% |
| ! | CGTTAGTTTGGATTAATCTT+TGG | - | chr3.1:62272701-62272720 | None:intergenic | 30.0% |
| !! | ATACTGGTTTGACATCTATA+AGG | + | chr3.1:62272068-62272087 | MS.gene78717:CDS | 30.0% |
| !! | CTTTTTGTTTCTTGTTTCAC+TGG | - | chr3.1:62272662-62272681 | None:intergenic | 30.0% |
| !! | TCTTCTAAAACTCAGTCTTT+GGG | - | chr3.1:62273044-62273063 | None:intergenic | 30.0% |
| !! | TTCTTCTAAAACTCAGTCTT+TGG | - | chr3.1:62273045-62273064 | None:intergenic | 30.0% |
| !! | TTTTAGAAGAAGTGTGGATA+GGG | + | chr3.1:62273054-62273073 | MS.gene78717:CDS | 30.0% |
| !!! | TGAATTTTCTGAGATGTCTA+AGG | - | chr3.1:62272997-62273016 | None:intergenic | 30.0% |
| AACAGAAATACGAGCCTTTA+TGG | + | chr3.1:62272927-62272946 | MS.gene78717:CDS | 35.0% | |
| AAGTGTCTTGAAGAGAACTA+TGG | + | chr3.1:62271895-62271914 | MS.gene78717:CDS | 35.0% | |
| AGTTTACACAAGTAGGAAGT+AGG | + | chr3.1:62272495-62272514 | MS.gene78717:intron | 35.0% | |
| ATACAAGATTCCGAAAGCAA+AGG | - | chr3.1:62272126-62272145 | None:intergenic | 35.0% | |
| ATCCTTTATGGTCAATCTGT+TGG | + | chr3.1:62271937-62271956 | MS.gene78717:CDS | 35.0% | |
| CAGTATGAACACTAAACTAG+CGG | - | chr3.1:62272374-62272393 | None:intergenic | 35.0% | |
| CTTACATGAATTACTAGCAC+TGG | - | chr3.1:62272212-62272231 | None:intergenic | 35.0% | |
| GACAGCAACAACATAAACTA+TGG | - | chr3.1:62272283-62272302 | None:intergenic | 35.0% | |
| GCAAAGGACATCAAATACAT+AGG | - | chr3.1:62272110-62272129 | None:intergenic | 35.0% | |
| GGTGACAAAATATTAGATGG+TGG | - | chr3.1:62272262-62272281 | None:intergenic | 35.0% | |
| TCCTTTATGGTCAATCTGTT+GGG | + | chr3.1:62271938-62271957 | MS.gene78717:CDS | 35.0% | |
| TCTCCATAGTCCTATACTAT+CGG | + | chr3.1:62272014-62272033 | MS.gene78717:CDS | 35.0% | |
| TCTGTCTTATCAGTACTTCT+TGG | - | chr3.1:62273199-62273218 | None:intergenic | 35.0% | |
| TTTCCATCTTTGAGCCATAA+AGG | - | chr3.1:62272944-62272963 | None:intergenic | 35.0% | |
| ! | AAACCAGTATGTCCTTTTCA+CGG | - | chr3.1:62272058-62272077 | None:intergenic | 35.0% |
| ! | TTTCTTGTTTCACTGGGTAT+AGG | - | chr3.1:62272655-62272674 | None:intergenic | 35.0% |
| !! | CGTTCTATACTTATTTCTGC+AGG | - | chr3.1:62272454-62272473 | None:intergenic | 35.0% |
| !!! | AATGGTTTTGGTCCTTAACT+TGG | + | chr3.1:62272336-62272355 | MS.gene78717:intron | 35.0% |
| !!! | ACTGAGTTTTAGAAGAAGTG+TGG | + | chr3.1:62273048-62273067 | MS.gene78717:CDS | 35.0% |
| !!! | GTTTTAGAAGAAGTGTGGAT+AGG | + | chr3.1:62273053-62273072 | MS.gene78717:CDS | 35.0% |
| AAGAGTCCAATTTGACCAGA+CGG | + | chr3.1:62273273-62273292 | MS.gene78717:CDS | 40.0% | |
| AAGTAGGTACCTATTGAGTG+TGG | + | chr3.1:62272511-62272530 | MS.gene78717:intron | 40.0% | |
| ACTGAGTAAGCACCAAGTTA+AGG | - | chr3.1:62272351-62272370 | None:intergenic | 40.0% | |
| CACTTCTTCTGGATTTCTCT+TGG | - | chr3.1:62273351-62273370 | None:intergenic | 40.0% | |
| CTCCATAGTCCTATACTATC+GGG | + | chr3.1:62272015-62272034 | MS.gene78717:CDS | 40.0% | |
| CTCCCATAAATGCTTTCCAT+GGG | - | chr3.1:62272900-62272919 | None:intergenic | 40.0% | |
| GATAGGGTTAAACAATCCAG+AGG | + | chr3.1:62273070-62273089 | MS.gene78717:CDS | 40.0% | |
| GCATACGTATTATGCTCACT+TGG | - | chr3.1:62271856-62271875 | None:intergenic | 40.0% | |
| GTCTTATCAGTACTTCTTGG+TGG | - | chr3.1:62273196-62273215 | None:intergenic | 40.0% | |
| TAAAACCAGCCACACTCAAT+AGG | - | chr3.1:62272523-62272542 | None:intergenic | 40.0% | |
| TCCATAGTCCTATACTATCG+GGG | + | chr3.1:62272016-62272035 | MS.gene78717:CDS | 40.0% | |
| TCCCAACAGATTGACCATAA+AGG | - | chr3.1:62271942-62271961 | None:intergenic | 40.0% | |
| TTGTTGCTGTCAGCATGTAA+TGG | + | chr3.1:62272292-62272311 | MS.gene78717:intron | 40.0% | |
| ! | AACCAGTATGTCCTTTTCAC+GGG | - | chr3.1:62272057-62272076 | None:intergenic | 40.0% |
| ! | CTAAAACTCAGTCTTTGGGA+TGG | - | chr3.1:62273040-62273059 | None:intergenic | 40.0% |
| ! | CTGAGATGTCTAAGGTATTC+TGG | - | chr3.1:62272989-62273008 | None:intergenic | 40.0% |
| !! | CAGAGGAAGTACTGATTGTT+CGG | + | chr3.1:62273087-62273106 | MS.gene78717:CDS | 40.0% |
| !! | CTCCCATGGAAAGCATTTAT+GGG | + | chr3.1:62272895-62272914 | MS.gene78717:CDS | 40.0% |
| !! | GGCACTTTTTAGCGTTAGTT+TGG | - | chr3.1:62272713-62272732 | None:intergenic | 40.0% |
| ACCCCGATAGTATAGGACTA+TGG | - | chr3.1:62272020-62272039 | None:intergenic | 45.0% | |
| ACTCTCAACCCCGATAGTAT+AGG | - | chr3.1:62272027-62272046 | None:intergenic | 45.0% | |
| ATGTTCAGTTTGAGAGACCG+CGG | + | chr3.1:62273374-62273393 | MS.gene78717:CDS | 45.0% | |
| CGAACAATCAGTACTTCCTC+TGG | - | chr3.1:62273089-62273108 | None:intergenic | 45.0% | |
| CTGAACATCGACACTTCTTC+TGG | - | chr3.1:62273362-62273381 | None:intergenic | 45.0% | |
| CTGATTGTTCGGAAAAGCCA+AGG | + | chr3.1:62273098-62273117 | MS.gene78717:CDS | 45.0% | |
| GAGCCTTTATGGCTCAAAGA+TGG | + | chr3.1:62272938-62272957 | MS.gene78717:CDS | 45.0% | |
| GCTCCCATAAATGCTTTCCA+TGG | - | chr3.1:62272901-62272920 | None:intergenic | 45.0% | |
| TATGGTCAATCTGTTGGGAG+TGG | + | chr3.1:62271943-62271962 | MS.gene78717:CDS | 45.0% | |
| ! | ACCAGTATGTCCTTTTCACG+GGG | - | chr3.1:62272056-62272075 | None:intergenic | 45.0% |
| ! | AGAGAACTATGGTGCTAAGC+AGG | + | chr3.1:62271906-62271925 | MS.gene78717:CDS | 45.0% |
| !! | CAGAGGAAGTACTGATTGCT+CGG | + | chr3.1:62273135-62273154 | MS.gene78717:CDS | 45.0% |
| !! | GCTCCCATGGAAAGCATTTA+TGG | + | chr3.1:62272894-62272913 | MS.gene78717:CDS | 45.0% |
| ACCCCGTGAAAAGGACATAC+TGG | + | chr3.1:62272052-62272071 | MS.gene78717:CDS | 50.0% | |
| AGGTACCTATTGAGTGTGGC+TGG | + | chr3.1:62272515-62272534 | MS.gene78717:intron | 50.0% | |
| CGAGCAGCAAGATCCAAAGT+AGG | - | chr3.1:62271970-62271989 | None:intergenic | 50.0% | |
| CTGATTGCTCGGAAAAGCCA+AGG | + | chr3.1:62273146-62273165 | MS.gene78717:CDS | 50.0% | |
| CTGTGATCTGTGCTCTTCCT+TGG | - | chr3.1:62273118-62273137 | None:intergenic | 50.0% | |
| GAGTGATGTACCCCGTGAAA+AGG | + | chr3.1:62272043-62272062 | MS.gene78717:CDS | 50.0% | |
| TCCAATTTGACCAGACGGAG+CGG | + | chr3.1:62273278-62273297 | MS.gene78717:CDS | 50.0% | |
| TCTTCAGGGAACTGCTGATG+AGG | + | chr3.1:62272862-62272881 | MS.gene78717:intron | 50.0% | |
| TGTTGGGAGTGGTCCTACTT+TGG | + | chr3.1:62271954-62271973 | MS.gene78717:CDS | 50.0% | |
| ! | AGCACTGGACACTTCACCAA+TGG | - | chr3.1:62272197-62272216 | None:intergenic | 50.0% |
| ! | AGGAAGAGCACAGATCACAG+AGG | + | chr3.1:62273118-62273137 | MS.gene78717:CDS | 50.0% |
| ! | GAGGTTGTTGATTGCTCCCA+TGG | + | chr3.1:62272881-62272900 | MS.gene78717:CDS | 50.0% |
| ACCGCTCCGTCTGGTCAAAT+TGG | - | chr3.1:62273282-62273301 | None:intergenic | 55.0% | |
| AGAACAACAGCCCTCAGTCG+GGG | - | chr3.1:62271997-62272016 | None:intergenic | 55.0% | |
| GAGAACAACAGCCCTCAGTC+GGG | - | chr3.1:62271998-62272017 | None:intergenic | 55.0% | |
| GGAGAACAACAGCCCTCAGT+CGG | - | chr3.1:62271999-62272018 | None:intergenic | 55.0% | |
| TGCTCGATTACCCCGACTGA+GGG | + | chr3.1:62271984-62272003 | MS.gene78717:CDS | 55.0% | |
| TTCAGTTTGAGAGACCGCGG+AGG | + | chr3.1:62273377-62273396 | MS.gene78717:CDS | 55.0% | |
| TTCTTCTTGACCGCTCCGTC+TGG | - | chr3.1:62273291-62273310 | None:intergenic | 55.0% | |
| CTGCTCGATTACCCCGACTG+AGG | + | chr3.1:62271983-62272002 | MS.gene78717:CDS | 60.0% | |
| AGCCAGTCGATGCTCCTCCG+CGG | - | chr3.1:62273394-62273413 | None:intergenic | 65.0% | |
| !! | GACCGCGGAGGAGCATCGAC+TGG | + | chr3.1:62273389-62273408 | MS.gene78717:CDS | 70.0% |
| !! | GCGGAGGAGCATCGACTGGC+TGG | + | chr3.1:62273393-62273412 | MS.gene78717:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 62271829 | 62273435 | 62271829 | ID=MS.gene78717 |
| chr3.1 | mRNA | 62271829 | 62273435 | 62271829 | ID=MS.gene78717.t1;Parent=MS.gene78717 |
| chr3.1 | exon | 62271829 | 62272089 | 62271829 | ID=MS.gene78717.t1.exon1;Parent=MS.gene78717.t1 |
| chr3.1 | CDS | 62271829 | 62272089 | 62271829 | ID=cds.MS.gene78717.t1;Parent=MS.gene78717.t1 |
| chr3.1 | exon | 62272179 | 62272226 | 62272179 | ID=MS.gene78717.t1.exon2;Parent=MS.gene78717.t1 |
| chr3.1 | CDS | 62272179 | 62272226 | 62272179 | ID=cds.MS.gene78717.t1;Parent=MS.gene78717.t1 |
| chr3.1 | exon | 62272869 | 62273435 | 62272869 | ID=MS.gene78717.t1.exon3;Parent=MS.gene78717.t1 |
| chr3.1 | CDS | 62272869 | 62273435 | 62272869 | ID=cds.MS.gene78717.t1;Parent=MS.gene78717.t1 |
| Gene Sequence |
| Protein sequence |
