AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58416


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58416.t1 MTR_4g108800 99.286 280 2 0 3 282 2 281 0.0 565
MS.gene58416.t1 MTR_0937s0020 48.677 189 87 2 26 214 289 467 8.12e-49 172
MS.gene58416.t1 MTR_7g029630 39.171 217 124 3 61 274 7 218 1.10e-45 153
MS.gene58416.t1 MTR_7g029630 37.008 127 76 2 96 219 15 140 1.59e-20 86.7
MS.gene58416.t1 MTR_3g449340 34.058 138 73 4 124 253 1 128 6.81e-12 62.8
MS.gene58416.t1 MTR_4g089175 83.333 30 5 0 78 107 22 51 8.40e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58416.t1 AT5G61410 85.714 280 40 0 3 282 2 281 2.81e-179 495
MS.gene58416.t1 AT5G61410 85.714 280 40 0 3 282 2 281 2.81e-179 495
MS.gene58416.t1 AT3G01850 37.778 225 131 4 61 281 6 225 9.76e-47 156
MS.gene58416.t1 AT3G01850 37.778 225 131 4 61 281 6 225 9.76e-47 156
MS.gene58416.t1 AT1G63290 39.631 217 123 3 61 274 8 219 1.13e-43 148
MS.gene58416.t1 AT3G01850 37.629 194 112 4 92 281 10 198 1.92e-35 126
MS.gene58416.t1 AT3G01850 37.629 194 112 4 92 281 10 198 1.92e-35 126

Find 77 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCGCCAACTTTGCAAAAT+TGG 0.109693 8.3:-15741134 MS.gene58416:CDS
AGAGGTCCAATAGTAATATT+TGG 0.187699 8.3:+15740910 None:intergenic
CATTCCTTTGTAGCTATAAA+AGG 0.220868 8.3:-15738754 MS.gene58416:intron
GTTGCTGGTTCTGCTGTGTT+TGG 0.328175 8.3:-15738887 MS.gene58416:CDS
CTCTCTAGGGTGTGAATCCT+TGG 0.328972 8.3:-15739345 MS.gene58416:intron
TTGGATTCATGTTGATGTTA+TGG 0.329699 8.3:-15740947 MS.gene58416:CDS
GAAAATTTCAACTGTGGTTA+AGG 0.331095 8.3:-15741215 MS.gene58416:CDS
GGAGCTAATGCACTGGTTGC+TGG 0.334561 8.3:-15738902 MS.gene58416:CDS
TTTGTCCCAAATATTACTAT+TGG 0.352259 8.3:-15740916 MS.gene58416:CDS
CTTTGCAAAATTGGGAGAAC+AGG 0.352968 8.3:-15741125 MS.gene58416:intron
TTAGCGGAGTACCAGGGTTT+AGG 0.354271 8.3:+15740295 None:intergenic
TCCGCCAACTTTGCAAAATT+GGG 0.359542 8.3:-15741133 MS.gene58416:CDS
GAGGCCTTTCACACAGAAAC+TGG 0.375837 8.3:+15738706 None:intergenic
AAATCTGGCACCCGCTGATC+TGG 0.396879 8.3:+15740742 None:intergenic
AGCACCTTGTAAGCATTTGC+TGG 0.401136 8.3:+15739298 None:intergenic
GCTCCTGCTTTGATGAAATC+TGG 0.406074 8.3:+15740727 None:intergenic
CCCTGTGACAGATTTACCTT+TGG 0.408758 8.3:-15740869 MS.gene58416:CDS
TAGAGTTGGCTGGTTGTGAT+TGG 0.411673 8.3:-15740966 MS.gene58416:CDS
GAGAAGATTGTGCGTGGAGA+AGG 0.423151 8.3:-15739459 MS.gene58416:intron
CCTTGAGAAAGTGAGAGAAC+GGG 0.429377 8.3:+15741942 None:intergenic
TCTGTAAACCCTGGCTTTGG+TGG 0.447445 8.3:-15739524 MS.gene58416:CDS
GAGGTCCAATAGTAATATTT+GGG 0.451344 8.3:+15740911 None:intergenic
GATTAATTGCACGATGCAAA+TGG 0.460222 8.3:+15740665 None:intergenic
ATTTGGCAGGTGATTGAGGC+TGG 0.461400 8.3:-15738923 MS.gene58416:intron
GGTGCTGGCAGTGGTTGACT+TGG 0.467221 8.3:-15739558 MS.gene58416:intron
AAACTCTGGCCACCAAAGCC+AGG 0.471474 8.3:+15739515 None:intergenic
GCAATAGAATATGTTCTTGA+TGG 0.472384 8.3:-15740270 MS.gene58416:intron
ATTGCACTTAGCGGAGTACC+AGG 0.474775 8.3:+15740288 None:intergenic
ATGTCTGTAAACCCTGGCTT+TGG 0.475764 8.3:-15739527 MS.gene58416:CDS
AAAAGCCTGGGAGCTAAAGC+TGG 0.477458 8.3:-15740324 MS.gene58416:CDS
CAACTCCAGCTTTAGCTCCC+AGG 0.485580 8.3:+15740319 None:intergenic
AAGTTGGCGGAAAGAATAGA+TGG 0.490752 8.3:+15741145 None:intergenic
TGCACGATGCAAATGGATAG+TGG 0.498424 8.3:+15740672 None:intergenic
AAAGTCCATTGATCTGAGAT+TGG 0.502632 8.3:+15741992 None:intergenic
GTGCCAGATTTCATCAAAGC+AGG 0.505243 8.3:-15740730 MS.gene58416:CDS
ACCCTCCAATCTCAGATCAA+TGG 0.506335 8.3:-15741997 MS.gene58416:CDS
GCACCTTGTAAGCATTTGCT+GGG 0.508474 8.3:+15739299 None:intergenic
TATTACTATTGGACCTCTTG+TGG 0.513189 8.3:-15740905 MS.gene58416:CDS
ACATATTCTATTGCACTTAG+CGG 0.514934 8.3:+15740279 None:intergenic
TTTACCTTTGGATGTCCACC+TGG 0.515412 8.3:-15740857 MS.gene58416:intron
TCCAAAGGTAAATCTGTCAC+AGG 0.515740 8.3:+15740868 None:intergenic
TGTTATTTGGCAGGTGATTG+AGG 0.527723 8.3:-15738927 MS.gene58416:intron
CTTGGCTCTCGATAAAACTC+TGG 0.531835 8.3:+15739501 None:intergenic
ACCTTGAGAAAGTGAGAGAA+CGG 0.535225 8.3:+15741941 None:intergenic
CCCGTTCTCTCACTTTCTCA+AGG 0.536451 8.3:-15741942 MS.gene58416:intron
CCTTGGATTGAAGTGGATGG+TGG 0.541023 8.3:-15739328 MS.gene58416:CDS
CTTGGATTGAAGTGGATGGT+GGG 0.541584 8.3:-15739327 MS.gene58416:CDS
TACCCCAGCAAATGCTTACA+AGG 0.545343 8.3:-15739302 MS.gene58416:intron
AGAAAGTGAGAGAACGGGGA+TGG 0.550196 8.3:+15741947 None:intergenic
CTAGGTAAAAGCAGTAGAGT+TGG 0.552705 8.3:-15740980 MS.gene58416:intron
GATTGTAGAACCAGATCAGC+GGG 0.553131 8.3:-15740752 MS.gene58416:CDS
GTAAAAGCAGTAGAGTTGGC+TGG 0.557874 8.3:-15740976 MS.gene58416:CDS
TCCATTGATCTGAGATTGGA+GGG 0.561639 8.3:+15741996 None:intergenic
GGAGCTAAAGATTATGCTGA+AGG 0.567422 8.3:-15738866 MS.gene58416:intron
TTAATTATGTCTGTAAACCC+TGG 0.567653 8.3:-15739533 MS.gene58416:CDS
ATTCATGTTGATGTTATGGA+TGG 0.568834 8.3:-15740943 MS.gene58416:CDS
GGAAGAGAGAATTCTTGTGA+AGG 0.574241 8.3:+15741968 None:intergenic
AACTCTGGCCACCAAAGCCA+GGG 0.576163 8.3:+15739516 None:intergenic
GATCTGAGATTGGAGGGTAG+AGG 0.576309 8.3:+15742002 None:intergenic
CGCAATGCATCAACCACAAG+AGG 0.585518 8.3:+15740892 None:intergenic
TTTCACACAGAAACTGGCTC+AGG 0.586572 8.3:+15738712 None:intergenic
CCACCATCCACTTCAATCCA+AGG 0.590960 8.3:+15739328 None:intergenic
AATACCAGGTGGACATCCAA+AGG 0.598223 8.3:+15740853 None:intergenic
GAAGAGAGAATTCTTGTGAA+GGG 0.599383 8.3:+15741969 None:intergenic
TGAGGCTGGAGCTAATGCAC+TGG 0.611831 8.3:-15738909 MS.gene58416:CDS
GTCCATTGATCTGAGATTGG+AGG 0.614275 8.3:+15741995 None:intergenic
TGTGAATCCTTGGATTGAAG+TGG 0.621250 8.3:-15739335 MS.gene58416:CDS
CAGGAGGAAAATTTCAACTG+TGG 0.630527 8.3:-15741221 MS.gene58416:CDS
GCTGGAGTTGTCCTAAACCC+TGG 0.635850 8.3:-15740306 MS.gene58416:CDS
TTGGATTGAAGTGGATGGTG+GGG 0.646043 8.3:-15739326 MS.gene58416:CDS
CTTGAGAAAGTGAGAGAACG+GGG 0.647983 8.3:+15741943 None:intergenic
AATCCTTGGATTGAAGTGGA+TGG 0.661026 8.3:-15739331 MS.gene58416:CDS
CCAAAGGTAAATCTGTCACA+GGG 0.662632 8.3:+15740869 None:intergenic
TGATTTGAGAAGATTGTGCG+TGG 0.667135 8.3:-15739465 MS.gene58416:CDS
CACCTTGTAAGCATTTGCTG+GGG 0.672494 8.3:+15739300 None:intergenic
TTGCACTTAGCGGAGTACCA+GGG 0.677738 8.3:+15740289 None:intergenic
TGATTGTAGAACCAGATCAG+CGG 0.686244 8.3:-15740753 MS.gene58416:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCTTATAATCTTATTA+TGG - chr8.3:15741168-15741187 MS.gene58416:CDS 10.0%
!! TATTATATACTGAAAATAAA+CGG + chr8.3:15740539-15740558 None:intergenic 10.0%
!! AACAATAAAAATTTAACACA+TGG + chr8.3:15740648-15740667 None:intergenic 15.0%
!! AATTATAAACAGAATAGAAA+AGG - chr8.3:15740747-15740766 MS.gene58416:CDS 15.0%
!! ACTATCTCATAAAAAAAAAA+TGG + chr8.3:15741324-15741343 None:intergenic 15.0%
!! ATTATATACTGAAAATAAAC+GGG + chr8.3:15740538-15740557 None:intergenic 15.0%
!! TTAATATTTAAGAGTTCTAT+TGG - chr8.3:15741643-15741662 MS.gene58416:intron 15.0%
!! TTTAAAAGTTAAATATGTCT+TGG - chr8.3:15740300-15740319 MS.gene58416:CDS 15.0%
!!! AATATTAATGATGCTATTTA+TGG - chr8.3:15740561-15740580 MS.gene58416:intron 15.0%
!!! AATTAGCTTAATTTCAAATT+TGG - chr8.3:15741023-15741042 MS.gene58416:intron 15.0%
!!! ATTTTCAGTATTATGTTATT+TGG - chr8.3:15741807-15741826 MS.gene58416:intron 15.0%
!!! ATTTTTTTTTTATGAGATAG+TGG - chr8.3:15741323-15741342 MS.gene58416:intron 15.0%
!! AAAGATTAAATTATGTGAGT+AGG - chr8.3:15741914-15741933 MS.gene58416:intron 20.0%
!! AAATATAAAATGATTCTACG+AGG + chr8.3:15739356-15739375 None:intergenic 20.0%
!! AAATGAATTCAAAAAGGAAA+AGG + chr8.3:15740507-15740526 None:intergenic 20.0%
!! AACAATAATTGAAAAGAAAG+AGG + chr8.3:15738835-15738854 None:intergenic 20.0%
!! CAATAGTAAACAAATAATGA+AGG - chr8.3:15741700-15741719 MS.gene58416:intron 20.0%
!! CAGAAAAAATGAATTCAAAA+AGG + chr8.3:15740513-15740532 None:intergenic 20.0%
!! TAACAAAAAGATATTAAAGC+AGG + chr8.3:15739497-15739516 None:intergenic 20.0%
!! TCATTCTAAATTATAAGTGA+TGG + chr8.3:15741497-15741516 None:intergenic 20.0%
!! TGTATTTGACAATTATACAA+AGG + chr8.3:15740226-15740245 None:intergenic 20.0%
!! TTATATACTGAAAATAAACG+GGG + chr8.3:15740537-15740556 None:intergenic 20.0%
!!! AATCAGAAATTTTCTTTACT+TGG + chr8.3:15741267-15741286 None:intergenic 20.0%
!!! TTACCAATATTTTTAGAACA+TGG + chr8.3:15740719-15740738 None:intergenic 20.0%
! AATTCAATGAACAAAGTTTG+TGG + chr8.3:15741730-15741749 None:intergenic 25.0%
! AATTTGAAAAGTCAAACATC+TGG - chr8.3:15740934-15740953 MS.gene58416:CDS 25.0%
! ACCAGAAACTAAAATGAATT+TGG + chr8.3:15740818-15740837 None:intergenic 25.0%
! AGAAATATGCTAAAATGACT+TGG + chr8.3:15739703-15739722 None:intergenic 25.0%
! ATAATCCCAACATAAAACAT+TGG - chr8.3:15741583-15741602 MS.gene58416:intron 25.0%
! ATTGTTAGAATTCAACTTCT+GGG - chr8.3:15738849-15738868 MS.gene58416:intron 25.0%
! CTAAGTACTAACATTAGTAA+AGG - chr8.3:15740326-15740345 MS.gene58416:CDS 25.0%
! CTGATTAAGTTTCTTGATTT+AGG - chr8.3:15740398-15740417 MS.gene58416:intron 25.0%
! CTTAATCAGATAAATTCAAC+AGG + chr8.3:15740387-15740406 None:intergenic 25.0%
! TAATCCCAACATAAAACATT+GGG - chr8.3:15741584-15741603 MS.gene58416:intron 25.0%
! TATGTATAAAGATGAATACC+AGG + chr8.3:15739911-15739930 None:intergenic 25.0%
! TATTGTTAGAATTCAACTTC+TGG - chr8.3:15738848-15738867 MS.gene58416:intron 25.0%
! TTATAATCTTATTATGGTGC+TGG - chr8.3:15741174-15741193 MS.gene58416:CDS 25.0%
! TTCCTTACATAATCTCTAAT+TGG - chr8.3:15741372-15741391 MS.gene58416:intron 25.0%
! TTTGTCCCAAATATTACTAT+TGG - chr8.3:15739831-15739850 MS.gene58416:intron 25.0%
!! AGAATTAGCTAATTTGAAGT+TGG + chr8.3:15739085-15739104 None:intergenic 25.0%
!! TATTCCTTTTATAGCTACAA+AGG + chr8.3:15742000-15742019 None:intergenic 25.0%
!!! ACCAAATTCATTTTAGTTTC+TGG - chr8.3:15740814-15740833 MS.gene58416:intron 25.0%
!!! GTTCCATGTTCTAAAAATAT+TGG - chr8.3:15740713-15740732 MS.gene58416:CDS 25.0%
!!! GTTTGACTTTTCAAATTTTG+TGG + chr8.3:15740931-15740950 None:intergenic 25.0%
AAAGTTAAGCTCTTGAACAA+GGG - chr8.3:15739053-15739072 MS.gene58416:intron 30.0%
AACTCTTAGTTTACCGATAT+TGG + chr8.3:15740616-15740635 None:intergenic 30.0%
ACATATTCTATTGCACTTAG+CGG + chr8.3:15740471-15740490 None:intergenic 30.0%
AGAGGTCCAATAGTAATATT+TGG + chr8.3:15739840-15739859 None:intergenic 30.0%
AGATAACAAGTAGTAAAACC+AGG + chr8.3:15739169-15739188 None:intergenic 30.0%
ATACACATCCATTTATGTGA+TGG + chr8.3:15740278-15740297 None:intergenic 30.0%
ATCACATAAATGGATGTGTA+TGG - chr8.3:15740277-15740296 MS.gene58416:CDS 30.0%
ATCGTGCAATTAATCAAGTA+AGG - chr8.3:15740090-15740109 MS.gene58416:intron 30.0%
ATTATGTAAGGAATAAGAGC+CGG + chr8.3:15741365-15741384 None:intergenic 30.0%
ATTCATGTTGATGTTATGGA+TGG - chr8.3:15739804-15739823 MS.gene58416:intron 30.0%
CAAAGGCTTGAATATATGTT+TGG + chr8.3:15740209-15740228 None:intergenic 30.0%
CACAAAAAAACCAAGTTGTA+AGG + chr8.3:15739192-15739211 None:intergenic 30.0%
CATTCCTTTGTAGCTATAAA+AGG - chr8.3:15741993-15742012 MS.gene58416:CDS 30.0%
GAAAATTTCAACTGTGGTTA+AGG - chr8.3:15739532-15739551 MS.gene58416:CDS 30.0%
GACATTCATAGAATATTCAG+TGG + chr8.3:15740909-15740928 None:intergenic 30.0%
GACCAATTAGAGATTATGTA+AGG + chr8.3:15741377-15741396 None:intergenic 30.0%
GAGGTCCAATAGTAATATTT+GGG + chr8.3:15739839-15739858 None:intergenic 30.0%
GATTAAATTATGTGAGTAGG+AGG - chr8.3:15741917-15741936 MS.gene58416:intron 30.0%
GCAATAGAATATGTTCTTGA+TGG - chr8.3:15740477-15740496 MS.gene58416:intron 30.0%
TCACAATTCACAGTAAATCT+AGG + chr8.3:15739380-15739399 None:intergenic 30.0%
TCTATGTGCAAATTCTATGA+AGG - chr8.3:15739232-15739251 MS.gene58416:intron 30.0%
TGTAATATGAGCATTACTCT+TGG + chr8.3:15739004-15739023 None:intergenic 30.0%
TGTGATTCTGATATTTGTCA+TGG - chr8.3:15741966-15741985 MS.gene58416:CDS 30.0%
TTAATTATGTCTGTAAACCC+TGG - chr8.3:15741214-15741233 MS.gene58416:CDS 30.0%
TTGATTTAGGTAAAAAGCCT+GGG - chr8.3:15740411-15740430 MS.gene58416:intron 30.0%
TTGGATTCATGTTGATGTTA+TGG - chr8.3:15739800-15739819 MS.gene58416:intron 30.0%
! AATGATGCTATTTATGGCTT+AGG - chr8.3:15740567-15740586 MS.gene58416:intron 30.0%
! CTTTTATAGCTACAAAGGAA+TGG + chr8.3:15741995-15742014 None:intergenic 30.0%
! GTTTCCCAATGTTTTATGTT+GGG + chr8.3:15741591-15741610 None:intergenic 30.0%
! TCAGTATTATGTTATTTGGC+AGG - chr8.3:15741811-15741830 MS.gene58416:intron 30.0%
! TGTTTCCCAATGTTTTATGT+TGG + chr8.3:15741592-15741611 None:intergenic 30.0%
!!! CTTTTTGTTATTGTGAACTC+AGG - chr8.3:15739507-15739526 MS.gene58416:CDS 30.0%
!!! TACAACTTGGTTTTTTTGTG+AGG - chr8.3:15739192-15739211 MS.gene58416:intron 30.0%
AAGCCTTCTCTAACAAATTC+GGG + chr8.3:15739450-15739469 None:intergenic 35.0%
ACCTTGACTTTCATCATCAT+AGG + chr8.3:15741053-15741072 None:intergenic 35.0%
AGAACTCCAACAGTTATGAT+TGG + chr8.3:15739734-15739753 None:intergenic 35.0%
AGCTTAACTTTGTAACCTCA+AGG + chr8.3:15739044-15739063 None:intergenic 35.0%
ATTCAACAGGAAACTGAAAC+TGG + chr8.3:15740374-15740393 None:intergenic 35.0%
CAAAGTTAAGCTCTTGAACA+AGG - chr8.3:15739052-15739071 MS.gene58416:intron 35.0%
CAAGCCTTCTCTAACAAATT+CGG + chr8.3:15739451-15739470 None:intergenic 35.0%
CAGAATAGAAAAGGTTCGTT+TGG - chr8.3:15740756-15740775 MS.gene58416:CDS 35.0%
CCTTGACTTTCATCATCATA+GGG + chr8.3:15741052-15741071 None:intergenic 35.0%
CTTGACTTTCATCATCATAG+GGG + chr8.3:15741051-15741070 None:intergenic 35.0%
CTTGATTTAGGTAAAAAGCC+TGG - chr8.3:15740410-15740429 MS.gene58416:intron 35.0%
GAAGAGAGAATTCTTGTGAA+GGG + chr8.3:15738781-15738800 None:intergenic 35.0%
GATTAATTGCACGATGCAAA+TGG + chr8.3:15740085-15740104 None:intergenic 35.0%
GCTTAACTTTGTAACCTCAA+GGG + chr8.3:15739043-15739062 None:intergenic 35.0%
GCTTATGTGGTTACCAATAT+CGG - chr8.3:15740600-15740619 MS.gene58416:intron 35.0%
GTATAAAGATGAATACCAGG+TGG + chr8.3:15739908-15739927 None:intergenic 35.0%
TAAAATGATTCTACGAGGAG+TGG + chr8.3:15739351-15739370 None:intergenic 35.0%
TACAACTCAAACAGATCCTA+TGG + chr8.3:15741780-15741799 None:intergenic 35.0%
TACGTGACATAGAAAACCAT+AGG - chr8.3:15741761-15741780 MS.gene58416:intron 35.0%
TATTACTATTGGACCTCTTG+TGG - chr8.3:15739842-15739861 MS.gene58416:intron 35.0%
TGCAGTAACCATCACATAAA+TGG - chr8.3:15740267-15740286 MS.gene58416:intron 35.0%
TGGTAACCACATAAGCATAT+GGG + chr8.3:15740596-15740615 None:intergenic 35.0%
TTATGTAAGGAATAAGAGCC+GGG + chr8.3:15741364-15741383 None:intergenic 35.0%
TTGGAGTTCTTGTGTTATCT+TGG - chr8.3:15739744-15739763 MS.gene58416:intron 35.0%
TTGGGATTATCCTCTTGAAA+AGG + chr8.3:15741573-15741592 None:intergenic 35.0%
TTGTCACCAATCATAACTGT+TGG - chr8.3:15739725-15739744 MS.gene58416:intron 35.0%
! AAAGTCCATTGATCTGAGAT+TGG + chr8.3:15738758-15738777 None:intergenic 35.0%
! CTTGTTATCTCCTTACAACT+TGG - chr8.3:15739179-15739198 MS.gene58416:intron 35.0%
! GCATTGTCAACTTTTTAACC+TGG - chr8.3:15739148-15739167 MS.gene58416:intron 35.0%
! TTCTCCCAATTTTGCAAAGT+TGG + chr8.3:15739621-15739640 None:intergenic 35.0%
! TTGGTAACCACATAAGCATA+TGG + chr8.3:15740597-15740616 None:intergenic 35.0%
!! AATTTGTTAGAGAAGGCTTG+TGG - chr8.3:15739451-15739470 MS.gene58416:intron 35.0%
!! AGTTTCTGGTGAATTACACT+TGG - chr8.3:15740828-15740847 MS.gene58416:intron 35.0%
!! ATAGGATCTGTTTGAGTTGT+AGG - chr8.3:15741779-15741798 MS.gene58416:intron 35.0%
!! ATGTTAACTTGTTCTGCGTA+AGG - chr8.3:15738939-15738958 MS.gene58416:intron 35.0%
!! TAGGATCTGTTTGAGTTGTA+GGG - chr8.3:15741780-15741799 MS.gene58416:intron 35.0%
!! TCAATGATTGCCTTTTCAAG+AGG - chr8.3:15741560-15741579 MS.gene58416:intron 35.0%
!! TGAGCAAAAAAAGAAGCACT+TGG + chr8.3:15741669-15741688 None:intergenic 35.0%
!! TTTGTTATTGTGAACTCAGG+AGG - chr8.3:15739510-15739529 MS.gene58416:CDS 35.0%
!!! ACTTGGTTTTTTTGTGAGGT+TGG - chr8.3:15739196-15739215 MS.gene58416:intron 35.0%
AAGTTGGCGGAAAGAATAGA+TGG + chr8.3:15739605-15739624 None:intergenic 40.0%
AATCCTTGGATTGAAGTGGA+TGG - chr8.3:15741416-15741435 MS.gene58416:intron 40.0%
ACCTTGAGAAAGTGAGAGAA+CGG + chr8.3:15738809-15738828 None:intergenic 40.0%
AGGTTTCCCATATGCTTATG+TGG - chr8.3:15740587-15740606 MS.gene58416:intron 40.0%
CAGGAGGAAAATTTCAACTG+TGG - chr8.3:15739526-15739545 MS.gene58416:CDS 40.0%
CCAAAGGTAAATCTGTCACA+GGG + chr8.3:15739881-15739900 None:intergenic 40.0%
CTAGGTAAAAGCAGTAGAGT+TGG - chr8.3:15739767-15739786 MS.gene58416:intron 40.0%
CTGCATTCTTGACAAGATTC+TGG + chr8.3:15740252-15740271 None:intergenic 40.0%
CTTTGCAAAATTGGGAGAAC+AGG - chr8.3:15739622-15739641 MS.gene58416:intron 40.0%
GGAAGAGAGAATTCTTGTGA+AGG + chr8.3:15738782-15738801 None:intergenic 40.0%
GGAGCTAAAGATTATGCTGA+AGG - chr8.3:15741881-15741900 MS.gene58416:intron 40.0%
GTTCTTGTGTTATCTTGGCT+AGG - chr8.3:15739749-15739768 MS.gene58416:intron 40.0%
TATGTAAGGAATAAGAGCCG+GGG + chr8.3:15741363-15741382 None:intergenic 40.0%
TCCAAAGGTAAATCTGTCAC+AGG + chr8.3:15739882-15739901 None:intergenic 40.0%
TCCGCCAACTTTGCAAAATT+GGG - chr8.3:15739614-15739633 MS.gene58416:intron 40.0%
TGATTGTAGAACCAGATCAG+CGG - chr8.3:15739994-15740013 MS.gene58416:intron 40.0%
TGATTTGAGAAGATTGTGCG+TGG - chr8.3:15741282-15741301 MS.gene58416:intron 40.0%
TGTGAATCCTTGGATTGAAG+TGG - chr8.3:15741412-15741431 MS.gene58416:intron 40.0%
TTAAGCTCTTGAACAAGGGA+AGG - chr8.3:15739057-15739076 MS.gene58416:intron 40.0%
TTCCGCCAACTTTGCAAAAT+TGG - chr8.3:15739613-15739632 MS.gene58416:intron 40.0%
! AATTGGTCTCTCTCTCTCTA+GGG - chr8.3:15741389-15741408 MS.gene58416:intron 40.0%
! CCCTATGATGATGAAAGTCA+AGG - chr8.3:15741049-15741068 MS.gene58416:intron 40.0%
! TAATTGGTCTCTCTCTCTCT+AGG - chr8.3:15741388-15741407 MS.gene58416:intron 40.0%
! TCCATTGATCTGAGATTGGA+GGG + chr8.3:15738754-15738773 None:intergenic 40.0%
! TCCCAATTTTGCAAAGTTGG+CGG + chr8.3:15739618-15739637 None:intergenic 40.0%
! TGTTATTTGGCAGGTGATTG+AGG - chr8.3:15741820-15741839 MS.gene58416:intron 40.0%
!! ACACCCGAATTTGTTAGAGA+AGG - chr8.3:15739444-15739463 MS.gene58416:intron 40.0%
AATACCAGGTGGACATCCAA+AGG + chr8.3:15739897-15739916 None:intergenic 45.0%
ACAGGAAACTGAAACTGGAG+TGG + chr8.3:15740369-15740388 None:intergenic 45.0%
ACCCTCCAATCTCAGATCAA+TGG - chr8.3:15738750-15738769 MS.gene58416:intron 45.0%
AGCACCTTGTAAGCATTTGC+TGG + chr8.3:15741452-15741471 None:intergenic 45.0%
ATGTAAGGAATAAGAGCCGG+GGG + chr8.3:15741362-15741381 None:intergenic 45.0%
ATGTCTGTAAACCCTGGCTT+TGG - chr8.3:15741220-15741239 MS.gene58416:CDS 45.0%
CCCTGTGACAGATTTACCTT+TGG - chr8.3:15739878-15739897 MS.gene58416:intron 45.0%
CCTTGAGAAAGTGAGAGAAC+GGG + chr8.3:15738808-15738827 None:intergenic 45.0%
CTTGAGAAAGTGAGAGAACG+GGG + chr8.3:15738807-15738826 None:intergenic 45.0%
CTTGGATTGAAGTGGATGGT+GGG - chr8.3:15741420-15741439 MS.gene58416:intron 45.0%
CTTTGTAACCTCAAGGGACA+CGG + chr8.3:15739037-15739056 None:intergenic 45.0%
GATTGTAGAACCAGATCAGC+GGG - chr8.3:15739995-15740014 MS.gene58416:intron 45.0%
GCACCTTGTAAGCATTTGCT+GGG + chr8.3:15741451-15741470 None:intergenic 45.0%
GCTCCTGCTTTGATGAAATC+TGG + chr8.3:15740023-15740042 None:intergenic 45.0%
GTAAAAGCAGTAGAGTTGGC+TGG - chr8.3:15739771-15739790 MS.gene58416:intron 45.0%
GTGCCAGATTTCATCAAAGC+AGG - chr8.3:15740017-15740036 MS.gene58416:intron 45.0%
TACCCCAGCAAATGCTTACA+AGG - chr8.3:15741445-15741464 MS.gene58416:intron 45.0%
TGCACGATGCAAATGGATAG+TGG + chr8.3:15740078-15740097 None:intergenic 45.0%
TTGGATTGAAGTGGATGGTG+GGG - chr8.3:15741421-15741440 MS.gene58416:intron 45.0%
TTTACCTTTGGATGTCCACC+TGG - chr8.3:15739890-15739909 MS.gene58416:intron 45.0%
! CACCTTGTAAGCATTTGCTG+GGG + chr8.3:15741450-15741469 None:intergenic 45.0%
! CTTGGCTCTCGATAAAACTC+TGG + chr8.3:15741249-15741268 None:intergenic 45.0%
! GGAGGCATACATTGCAATAG+TGG - chr8.3:15741935-15741954 MS.gene58416:intron 45.0%
! GTCCATTGATCTGAGATTGG+AGG + chr8.3:15738755-15738774 None:intergenic 45.0%
! TAGAGTTGGCTGGTTGTGAT+TGG - chr8.3:15739781-15739800 MS.gene58416:intron 45.0%
! TGGATTTTGTGTTTTCCCCC+CGG - chr8.3:15741343-15741362 MS.gene58416:intron 45.0%
!! TCTTATTATGGTGCTGGCAG+TGG - chr8.3:15741180-15741199 MS.gene58416:CDS 45.0%
AAAAGCCTGGGAGCTAAAGC+TGG - chr8.3:15740423-15740442 MS.gene58416:intron 50.0%
AGAAAGTGAGAGAACGGGGA+TGG + chr8.3:15738803-15738822 None:intergenic 50.0%
AGATTGTGCGTGGAGAAGGT+AGG - chr8.3:15741292-15741311 MS.gene58416:intron 50.0%
ATTTGGCAGGTGATTGAGGC+TGG - chr8.3:15741824-15741843 MS.gene58416:intron 50.0%
CCACCATCCACTTCAATCCA+AGG + chr8.3:15741422-15741441 None:intergenic 50.0%
CCCGTTCTCTCACTTTCTCA+AGG - chr8.3:15738805-15738824 MS.gene58416:intron 50.0%
CCTTGGATTGAAGTGGATGG+TGG - chr8.3:15741419-15741438 MS.gene58416:intron 50.0%
CGCAATGCATCAACCACAAG+AGG + chr8.3:15739858-15739877 None:intergenic 50.0%
GAGAAGATTGTGCGTGGAGA+AGG - chr8.3:15741288-15741307 MS.gene58416:intron 50.0%
GATTCAAACCGTGTCCCTTG+AGG - chr8.3:15739026-15739045 MS.gene58416:intron 50.0%
TGTAAGGAATAAGAGCCGGG+GGG + chr8.3:15741361-15741380 None:intergenic 50.0%
! ATTGCACTTAGCGGAGTACC+AGG + chr8.3:15740462-15740481 None:intergenic 50.0%
! GATCTGAGATTGGAGGGTAG+AGG + chr8.3:15738748-15738767 None:intergenic 50.0%
! TTAGCGGAGTACCAGGGTTT+AGG + chr8.3:15740455-15740474 None:intergenic 50.0%
! TTGCACTTAGCGGAGTACCA+GGG + chr8.3:15740461-15740480 None:intergenic 50.0%
!! CTCTCTAGGGTGTGAATCCT+TGG - chr8.3:15741402-15741421 MS.gene58416:intron 50.0%
!! GTTGCTGGTTCTGCTGTGTT+TGG - chr8.3:15741860-15741879 MS.gene58416:intron 50.0%
!! TCTGTAAACCCTGGCTTTGG+TGG - chr8.3:15741223-15741242 MS.gene58416:intron 50.0%
AAACTCTGGCCACCAAAGCC+AGG + chr8.3:15741235-15741254 None:intergenic 55.0%
AAATCTGGCACCCGCTGATC+TGG + chr8.3:15740008-15740027 None:intergenic 55.0%
AACTCTGGCCACCAAAGCCA+GGG + chr8.3:15741234-15741253 None:intergenic 55.0%
GCTGGAGTTGTCCTAAACCC+TGG - chr8.3:15740441-15740460 MS.gene58416:intron 55.0%
TGAGGCTGGAGCTAATGCAC+TGG - chr8.3:15741838-15741857 MS.gene58416:intron 55.0%
TGTGTGTGTGTGCGTGTGCA+AGG + chr8.3:15739427-15739446 None:intergenic 55.0%
! CAACTCCAGCTTTAGCTCCC+AGG + chr8.3:15740431-15740450 None:intergenic 55.0%
!! GGAGCTAATGCACTGGTTGC+TGG - chr8.3:15741845-15741864 MS.gene58416:intron 55.0%
!! GGTGCTGGCAGTGGTTGACT+TGG - chr8.3:15741189-15741208 MS.gene58416:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 15738714 15742055 15738714 ID=MS.gene58416
chr8.3 mRNA 15738714 15742055 15738714 ID=MS.gene58416.t1;Parent=MS.gene58416
chr8.3 exon 15741943 15742055 15741943 ID=MS.gene58416.t1.exon1;Parent=MS.gene58416.t1
chr8.3 CDS 15741943 15742055 15741943 ID=cds.MS.gene58416.t1;Parent=MS.gene58416.t1
chr8.3 exon 15741126 15741240 15741126 ID=MS.gene58416.t1.exon2;Parent=MS.gene58416.t1
chr8.3 CDS 15741126 15741240 15741126 ID=cds.MS.gene58416.t1;Parent=MS.gene58416.t1
chr8.3 exon 15740858 15740998 15740858 ID=MS.gene58416.t1.exon3;Parent=MS.gene58416.t1
chr8.3 CDS 15740858 15740998 15740858 ID=cds.MS.gene58416.t1;Parent=MS.gene58416.t1
chr8.3 exon 15740663 15740776 15740663 ID=MS.gene58416.t1.exon4;Parent=MS.gene58416.t1
chr8.3 CDS 15740663 15740776 15740663 ID=cds.MS.gene58416.t1;Parent=MS.gene58416.t1
chr8.3 exon 15740271 15740349 15740271 ID=MS.gene58416.t1.exon5;Parent=MS.gene58416.t1
chr8.3 CDS 15740271 15740349 15740271 ID=cds.MS.gene58416.t1;Parent=MS.gene58416.t1
chr8.3 exon 15739460 15739569 15739460 ID=MS.gene58416.t1.exon6;Parent=MS.gene58416.t1
chr8.3 CDS 15739460 15739569 15739460 ID=cds.MS.gene58416.t1;Parent=MS.gene58416.t1
chr8.3 exon 15739303 15739359 15739303 ID=MS.gene58416.t1.exon7;Parent=MS.gene58416.t1
chr8.3 CDS 15739303 15739359 15739303 ID=cds.MS.gene58416.t1;Parent=MS.gene58416.t1
chr8.3 exon 15738867 15738936 15738867 ID=MS.gene58416.t1.exon8;Parent=MS.gene58416.t1
chr8.3 CDS 15738867 15738936 15738867 ID=cds.MS.gene58416.t1;Parent=MS.gene58416.t1
chr8.3 exon 15738714 15738763 15738714 ID=MS.gene58416.t1.exon9;Parent=MS.gene58416.t1
chr8.3 CDS 15738714 15738763 15738714 ID=cds.MS.gene58416.t1;Parent=MS.gene58416.t1
Gene Sequence

>MS.gene58416

ATGGCTTCAACTACTACAACTTCTCTATGTTCCTCTACCCTCCAATCTCAGATCAATGGACTTTCCCTTCACAAGAATTCTCTCTTCCATCCCCGTTCTCTCACTTTCTCAAGGTATACCTCTTTCTTTTCAATTATTGTTAGAATTCAACTTCTGGGTTGTTTAGAATGTAATAAAATTTTTCATTAATTGTATTTTATCAATCTTGTTTTTTCAATTAAAATCATGTTAACTTGTTCTGCGTAAGGACATTACTGCTTACTCAAATTAAAAGCACACAAATTTTACCAAGAGTAATGCTCATATTACAATGATTCAAACCGTGTCCCTTGAGGTTACAAAGTTAAGCTCTTGAACAAGGGAAGGATCCAACTTCAAATTAGCTAATTCTAACTAAATTTACATTTACATGATTTATCAATATCAAGATGAATGCATTGTCAACTTTTTAACCTGGTTTTACTACTTGTTATCTCCTTACAACTTGGTTTTTTTGTGAGGTTGGAACTTGAAACTGTTCTATGTGCAAATTCTATGAAGGAATTGAATTCTATGTGCAAATTCTATGAAGGAATTAGTCAACTTTTTCATGTATTTGTTGCTTGTAGCTCTATGTTCATGTTGAATTTTGAAACCACTCCTCGTAGAATCATTTTATATTTACCTAGATTTACTGTGAATTGTGAAAGAACTATACACAATACATTTTTCCTTGCACACGCACACACACACACCCGAATTTGTTAGAGAAGGCTTGTGGTATTTGAAAGCATAATGCAGCCTGCTTTAATATCTTTTTGTTATTGTGAACTCAGGAGGAAAATTTCAACTGTGGTTAAGGCTTCATCTCGTGTTGACAAGTTTTCAAAAAGTGATATCATTGTTTCTCCATCTATTCTTTCCGCCAACTTTGCAAAATTGGGAGAACAGGTTCTATACTACACTTTATCAAGTTTGCGAATTGCTTGTAAACTTGTTTCTCTTTTCCAAGTCATTTTAGCATATTTCTGATTGTCACCAATCATAACTGTTGGAGTTCTTGTGTTATCTTGGCTAGGTAAAAGCAGTAGAGTTGGCTGGTTGTGATTGGATTCATGTTGATGTTATGGATGGTCGCTTTGTCCCAAATATTACTATTGGACCTCTTGTGGTTGATGCATTGCGCCCTGTGACAGATTTACCTTTGGATGTCCACCTGGTATTCATCTTTATACATATATTAAATTAAGCTTATATTGAATGATGATTTCTTTTTCTGACTCTTGTTAAAGCACTGTAGATGATTGTAGAACCAGATCAGCGGGTGCCAGATTTCATCAAAGCAGGAGCTGACATTGTCAGTATTCATTGTGAACAATCTTCCACTATCCATTTGCATCGTGCAATTAATCAAGTAAGGTTTTCTTCTGAACTATCTCAATGTTGAACAATTTCGCTGTAACTCAAAGTTGTTATCAAGAAAACTAACTTAAATATTAAAATAATACGCGAGCCAAACATATATTCAAGCCTTTGTATAATTGTCAAATACAACTCCAGAATCTTGTCAAGAATGCAGTAACCATCACATAAATGGATGTGTATGGTTTAAAAGTTAAATATGTCTTGGCTTCTAAGTACTAACATTAGTAAAGGTATTTGAAACATATTTTCCACTCCAGTTTCAGTTTCCTGTTGAATTTATCTGATTAAGTTTCTTGATTTAGGTAAAAAGCCTGGGAGCTAAAGCTGGAGTTGTCCTAAACCCTGGTACTCCGCTAAGTGCAATAGAATATGTTCTTGATGGTGAGCCTTTTCCTTTTTGAATTCATTTTTTCTGTCCCCGTTTATTTTCAGTATATAATAAGAATATTAATGATGCTATTTATGGCTTAGGTTTCCCATATGCTTATGTGGTTACCAATATCGGTAAACTAAGAGTTCTAGTATTTCCATGTGTTAAATTTTTATTGTTTTCTGAATTGAAAAGTAAAATTTGAGTTTATGTGTTTAATATGCTGTTCCATGTTCTAAAAATATTGGTAACTTTATAAAATTATAAACAGAATAGAAAAGGTTCGTTTGGAAATTTTGTTAGCAATGTTACTTTAAAATTTATTCACCAAATTCATTTTAGTTTCTGGTGAATTACACTTGGATTTTTGTGATTATGTAAAGCATGTCACTTTGTTTTCTCATTTTCATATATGATTCCACTGAATATTCTATGAATGTCCACAAAATTTGAAAAGTCAAACATCTGGTTTTTGATATATCTTTCAAGAAGTTTAAACTTTAACTAGTAATTACATATTTCTACAGTATTTACTAATTAGCTTAATTTCAAATTTGGTGCCCCTATGATGATGAAAGTCAAGGTGCTACTCTTTTGTTGTAAATTTTAATTTCATCATTCATTTGTGATTGAAGTTTGTTGAGTTACATTTTTAATATTTGTTTTAGTGATTTAAAAATAAAATCTTATAATCTTATTATGGTGCTGGCAGTGGTTGACTTGGTCTTAATTATGTCTGTAAACCCTGGCTTTGGTGGCCAGAGTTTTATCGAGAGCCAAGTAAAGAAAATTTCTGATTTGAGAAGATTGTGCGTGGAGAAGGTAGGCTGCAACCATTTTTTTTTTATGAGATAGTGGATTTTGTGTTTTCCCCCCGGCTCTTATTCCTTACATAATCTCTAATTGGTCTCTCTCTCTCTAGGGTGTGAATCCTTGGATTGAAGTGGATGGTGGGGTTACCCCAGCAAATGCTTACAAGGTGCTGTATACATTATCACATTGTCTTCCATCACTTATAATTTAGAATGATCTGTAACAAGTTTTCTACATGCTGAACATAATCAGATAATGCTCAATGATTGCCTTTTCAAGAGGATAATCCCAACATAAAACATTGGGAAACAACTGATATTGCATGTGTATCTGCTCATACTCTTAATATTTAAGAGTTCTATTGGCCAAGTGCTTCTTTTTTTGCTCATAACAGAGAAACAATAGTAAACAAATAATGAAGGAAAACCACAAACTTTGTTCATTGAATTAGAACGCTTTCTACGTGACATAGAAAACCATAGGATCTGTTTGAGTTGTAGGGTCTAATTTTCAGTATTATGTTATTTGGCAGGTGATTGAGGCTGGAGCTAATGCACTGGTTGCTGGTTCTGCTGTGTTTGGAGCTAAAGATTATGCTGAAGGTACATTAAAAAAAGATTAAATTATGTGAGTAGGAGGCATACATTGCAATAGTGGAAATTCAATGTGATTCTGATATTTGTCATGGTTTCCATTCCTTTGTAGCTATAAAAGGAATAAAAGCTAGCAAAAGACCTGAGCCAGTTTCTGTGTGA

Protein sequence

>MS.gene58416.t1

MASTTTTSLCSSTLQSQINGLSLHKNSLFHPRSLTFSRRKISTVVKASSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPDQRVPDFIKAGADIVSIHCEQSSTIHLHRAINQVKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCVEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPEPVSV