Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041293.t1 | XP_003622292.1 | 99.2 | 265 | 2 | 0 | 1 | 265 | 8 | 272 | 3.00E-152 | 548.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041293.t1 | Q6DEY3 | 47.5 | 263 | 125 | 6 | 1 | 252 | 22 | 282 | 3.8e-63 | 243.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041293.t1 | Q2HUX9 | 99.2 | 265 | 2 | 0 | 1 | 265 | 8 | 272 | 2.2e-152 | 548.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene041293 | MS.gene61996 | PPI |
| MS.gene041293 | MS.gene76004 | PPI |
| MS.gene041293 | MS.gene052632 | PPI |
| MS.gene041293 | MS.gene022408 | PPI |
| MS.gene041293 | MS.gene29080 | PPI |
| MS.gene041293 | MS.gene78717 | PPI |
| MS.gene041293 | MS.gene44751 | PPI |
| MS.gene041293 | MS.gene022013 | PPI |
| MS.gene041293 | MS.gene70715 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041293.t1 | MTR_7g032640 | 99.174 | 363 | 3 | 0 | 1 | 363 | 8 | 370 | 0.0 | 748 |
| MS.gene041293.t1 | MTR_3g075410 | 75.806 | 372 | 80 | 2 | 1 | 362 | 8 | 379 | 0.0 | 590 |
| MS.gene041293.t1 | MTR_7g017430 | 65.027 | 366 | 104 | 2 | 1 | 357 | 8 | 358 | 4.56e-173 | 486 |
| MS.gene041293.t1 | MTR_6g018930 | 56.510 | 361 | 112 | 4 | 1 | 331 | 8 | 353 | 9.88e-144 | 411 |
| MS.gene041293.t1 | MTR_8g037335 | 62.030 | 266 | 96 | 2 | 1 | 261 | 8 | 273 | 4.02e-118 | 345 |
| MS.gene041293.t1 | MTR_5g029210 | 62.030 | 266 | 96 | 2 | 1 | 261 | 8 | 273 | 4.03e-116 | 343 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041293.t1 | AT5G14390 | 75.741 | 371 | 71 | 6 | 1 | 362 | 8 | 368 | 0.0 | 565 |
| MS.gene041293.t1 | AT3G01690 | 76.309 | 363 | 75 | 4 | 1 | 362 | 8 | 360 | 0.0 | 560 |
| MS.gene041293.t1 | AT4G24760 | 71.233 | 365 | 93 | 6 | 1 | 362 | 8 | 363 | 0.0 | 527 |
| MS.gene041293.t1 | AT3G30380 | 63.462 | 364 | 116 | 5 | 1 | 360 | 8 | 358 | 7.74e-167 | 471 |
| MS.gene041293.t1 | AT3G30380 | 64.167 | 360 | 112 | 5 | 1 | 356 | 8 | 354 | 2.54e-166 | 470 |
| MS.gene041293.t1 | AT5G38220 | 61.755 | 319 | 108 | 3 | 1 | 307 | 8 | 324 | 4.41e-147 | 419 |
| MS.gene041293.t1 | AT5G38220 | 61.755 | 319 | 108 | 3 | 1 | 307 | 8 | 324 | 4.41e-147 | 419 |
| MS.gene041293.t1 | AT1G66900 | 67.939 | 262 | 83 | 1 | 1 | 261 | 8 | 269 | 9.03e-136 | 388 |
| MS.gene041293.t1 | AT4G31020 | 67.188 | 256 | 84 | 0 | 1 | 256 | 8 | 263 | 8.56e-131 | 376 |
| MS.gene041293.t1 | AT4G31020 | 67.188 | 256 | 84 | 0 | 1 | 256 | 8 | 263 | 8.56e-131 | 376 |
| MS.gene041293.t1 | AT1G13610 | 53.514 | 370 | 118 | 8 | 1 | 362 | 8 | 331 | 2.18e-128 | 372 |
| MS.gene041293.t1 | AT2G24320 | 62.500 | 256 | 95 | 1 | 1 | 256 | 8 | 262 | 5.75e-125 | 361 |
| MS.gene041293.t1 | AT2G24320 | 62.500 | 256 | 95 | 1 | 1 | 256 | 1 | 255 | 1.00e-124 | 360 |
| MS.gene041293.t1 | AT1G32190 | 56.506 | 269 | 108 | 1 | 1 | 260 | 8 | 276 | 2.86e-109 | 326 |
| MS.gene041293.t1 | AT5G38220 | 68.657 | 201 | 61 | 1 | 1 | 201 | 8 | 206 | 4.67e-103 | 303 |
| MS.gene041293.t1 | AT1G13610 | 50.617 | 243 | 95 | 3 | 108 | 335 | 18 | 250 | 2.32e-77 | 239 |
| MS.gene041293.t1 | AT1G32190 | 60.390 | 154 | 61 | 0 | 107 | 260 | 38 | 191 | 5.94e-64 | 207 |
Find 71 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCACAGTCCAATACTTTC+TGG | 0.217252 | 7.2:+66941949 | MS.gene041293:CDS |
| TCATGGTAACGCTGCTGATC+TGG | 0.228996 | 7.2:+66940092 | MS.gene041293:CDS |
| TGTTGCAGGTATGATTATTC+TGG | 0.230487 | 7.2:+66941646 | MS.gene041293:intron |
| GTCCAATACTTTCTGGCTTA+AGG | 0.292115 | 7.2:+66941956 | MS.gene041293:CDS |
| AACCAGTATGAACGCTTTAC+TGG | 0.303616 | 7.2:-66941988 | None:intergenic |
| CAAGAAGATATAATCCTTTA+CGG | 0.308045 | 7.2:+66941859 | MS.gene041293:CDS |
| GTTGATCATCAATTAGAAAA+AGG | 0.324209 | 7.2:+66943139 | MS.gene041293:CDS |
| TTGACCGACTCGACAGAATA+AGG | 0.327499 | 7.2:+66943173 | MS.gene041293:CDS |
| TCCAATACTTTCTGGCTTAA+GGG | 0.333040 | 7.2:+66941957 | MS.gene041293:CDS |
| ATACTGGTTTGACATATATA+AGG | 0.371998 | 7.2:+66942002 | MS.gene041293:CDS |
| AGTTTGTATGATGGTGGGTT+TGG | 0.380408 | 7.2:-66939919 | None:intergenic |
| GTTCCCACGGTAAGCAACTC+TGG | 0.399048 | 7.2:+66942741 | MS.gene041293:CDS |
| CTAATCAAAGATGATTTAAC+AGG | 0.400554 | 7.2:+66939940 | MS.gene041293:CDS |
| GGTTTGTCTGTGCTCTTCCT+TGG | 0.400736 | 7.2:-66942992 | None:intergenic |
| AGCTCTTTCCCGAGTACATA+AGG | 0.413590 | 7.2:+66942825 | MS.gene041293:CDS |
| CTTCAGATGCCTTATGTACT+CGG | 0.422463 | 7.2:-66942834 | None:intergenic |
| TGTTGGAAGTGGCCCAACTT+TGG | 0.424922 | 7.2:+66941888 | MS.gene041293:CDS |
| AAGTGTCTCGAAGAAAGTTT+TGG | 0.425013 | 7.2:+66941829 | MS.gene041293:CDS |
| GTTGCAGGTATGATTATTCT+GGG | 0.427239 | 7.2:+66941647 | MS.gene041293:intron |
| TTGTATGATGGTGGGTTTGG+TGG | 0.435014 | 7.2:-66939916 | None:intergenic |
| CCACTTGCGTGTTAATCTCA+TGG | 0.442917 | 7.2:+66940149 | MS.gene041293:CDS |
| TCAACTCTTCTTTACTCTCA+TGG | 0.456071 | 7.2:+66940075 | MS.gene041293:CDS |
| TTGATTAGTTTGTATGATGG+TGG | 0.458180 | 7.2:-66939925 | None:intergenic |
| AAAACATCCGTACTCTTTCG+AGG | 0.460409 | 7.2:-66942932 | None:intergenic |
| CTTACATGAACTATGAGAAC+TGG | 0.461132 | 7.2:-66942138 | None:intergenic |
| ATCCAGTAAAGCGTTCATAC+TGG | 0.462552 | 7.2:+66941986 | MS.gene041293:CDS |
| CATGGTAACGCTGCTGATCT+GGG | 0.462664 | 7.2:+66940093 | MS.gene041293:CDS |
| TCTTTCGAGGCTGCTCAAAC+TGG | 0.480744 | 7.2:-66942919 | None:intergenic |
| CACTTGCGTGTTAATCTCAT+GGG | 0.483122 | 7.2:+66940150 | MS.gene041293:CDS |
| TGATTAGTTTGTATGATGGT+GGG | 0.484762 | 7.2:-66939924 | None:intergenic |
| TCTGGGTACGGACAGTCGTC+AGG | 0.495232 | 7.2:+66941664 | MS.gene041293:CDS |
| CAAACTGGTCTGTACTCCTT+CGG | 0.496493 | 7.2:-66942904 | None:intergenic |
| ATCCTTTACGGACAATCTGT+TGG | 0.497874 | 7.2:+66941871 | MS.gene041293:CDS |
| ACCCTTAAGCCAGAAAGTAT+TGG | 0.501968 | 7.2:-66941958 | None:intergenic |
| TACGGACAATCTGTTGGAAG+TGG | 0.524349 | 7.2:+66941877 | MS.gene041293:CDS |
| TAGCTGCAAGATCCAAAGTT+GGG | 0.525550 | 7.2:-66941900 | None:intergenic |
| TTCAGATGCCTTATGTACTC+GGG | 0.527427 | 7.2:-66942833 | None:intergenic |
| TCTTTGATTAGTTTGTATGA+TGG | 0.531059 | 7.2:-66939928 | None:intergenic |
| CAACTTTGGATCTTGCAGCT+AGG | 0.531402 | 7.2:+66941902 | MS.gene041293:CDS |
| GAATATGTATTCTGCTCACT+TGG | 0.534786 | 7.2:-66941787 | None:intergenic |
| AGGTATGATTATTCTGGGTA+CGG | 0.542672 | 7.2:+66941652 | MS.gene041293:intron |
| CTAGCTGCAAGATCCAAAGT+TGG | 0.543864 | 7.2:-66941901 | None:intergenic |
| AGAAGAGTTGAAGTAGCCAT+TGG | 0.544121 | 7.2:-66940063 | None:intergenic |
| TTGATCATAAAGAGAGATCT+CGG | 0.544423 | 7.2:+66943080 | MS.gene041293:CDS |
| AAAACAACAGCTCGTAATTG+AGG | 0.546917 | 7.2:-66941928 | None:intergenic |
| TTCCAACAGATTGTCCGTAA+AGG | 0.559246 | 7.2:-66941873 | None:intergenic |
| TGAGCAGCCTCGAAAGAGTA+CGG | 0.561129 | 7.2:+66942925 | MS.gene041293:CDS |
| TACGAACCACTGTGGCTCAA+AGG | 0.565306 | 7.2:+66942782 | MS.gene041293:CDS |
| TGTTTATGTTCGTCATCCAA+TGG | 0.571569 | 7.2:+66940047 | MS.gene041293:CDS |
| TTCCCAGAGTTGCTTACCGT+GGG | 0.572357 | 7.2:-66942744 | None:intergenic |
| GAGCACAGACAAACCAGAGA+AGG | 0.574334 | 7.2:+66943000 | MS.gene041293:CDS |
| AACTCGTCTTCTAGTAATGG+TGG | 0.577907 | 7.2:+66943028 | MS.gene041293:CDS |
| TTCCCACGGTAAGCAACTCT+GGG | 0.578420 | 7.2:+66942742 | MS.gene041293:CDS |
| TAGTAATGGTGGTGATATGT+TGG | 0.589614 | 7.2:+66943039 | MS.gene041293:CDS |
| ATGAAACTTTCGACGCGTCG+AGG | 0.590434 | 7.2:+66940009 | MS.gene041293:CDS |
| GAAGTTGTAGATTGTTCCCA+CGG | 0.597143 | 7.2:+66942728 | MS.gene041293:CDS |
| CCATGAGATTAACACGCAAG+TGG | 0.613463 | 7.2:-66940149 | None:intergenic |
| CGCAAAGATACAGTTTCCGA+AGG | 0.613831 | 7.2:+66942888 | MS.gene041293:CDS |
| CGGAAACTGTATCTTTGCGA+CGG | 0.615327 | 7.2:-66942884 | None:intergenic |
| GTTCCCAGAGTTGCTTACCG+TGG | 0.632356 | 7.2:-66942745 | None:intergenic |
| GTACGGACAGTCGTCAGGAA+AGG | 0.635204 | 7.2:+66941669 | MS.gene041293:CDS |
| CAGTCCTTATTCTGTCGAGT+CGG | 0.637149 | 7.2:-66943177 | None:intergenic |
| CTGATCGTAGAGAAAAGCCA+AGG | 0.642341 | 7.2:+66942975 | MS.gene041293:CDS |
| CGACTCGACAGAATAAGGAC+TGG | 0.649791 | 7.2:+66943178 | MS.gene041293:CDS |
| AGAACTGGACAATTAACTAG+TGG | 0.652581 | 7.2:-66942123 | None:intergenic |
| GAATACATATTCAGATATCG+AGG | 0.657030 | 7.2:+66941798 | MS.gene041293:CDS |
| TTACCTCCTTTGAGCCACAG+TGG | 0.679149 | 7.2:-66942788 | None:intergenic |
| GAACCACTGTGGCTCAAAGG+AGG | 0.681241 | 7.2:+66942785 | MS.gene041293:CDS |
| ACTTGCGTGTTAATCTCATG+GGG | 0.715195 | 7.2:+66940151 | MS.gene041293:CDS |
| GAAAGAGCTCTAAATCGCAG+TGG | 0.717582 | 7.2:-66942811 | None:intergenic |
| AAGAGAAATACGAACCACTG+TGG | 0.749682 | 7.2:+66942774 | MS.gene041293:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAATAACTTATACAT+AGG | - | chr7.2:66940754-66940773 | None:intergenic | 10.0% |
| !!! | AAAACTAAAACATTTTTTTT+TGG | + | chr7.2:66941171-66941190 | MS.gene041293:intron | 10.0% |
| !!! | AAACTAAAACATTTTTTTTT+GGG | + | chr7.2:66941172-66941191 | MS.gene041293:intron | 10.0% |
| !!! | TATATAATATTCTTCTTTTT+TGG | + | chr7.2:66940328-66940347 | MS.gene041293:intron | 10.0% |
| !!! | TATGTAAAATTTTCTTTTTT+TGG | + | chr7.2:66940274-66940293 | MS.gene041293:intron | 10.0% |
| !! | CATAAAATAAATAAGTTGTT+TGG | - | chr7.2:66940551-66940570 | None:intergenic | 15.0% |
| !!! | AATTTTCTTTTTTTGGTTTT+TGG | + | chr7.2:66940281-66940300 | MS.gene041293:intron | 15.0% |
| !!! | TCATTTCATTTTGAATATTT+GGG | + | chr7.2:66942374-66942393 | MS.gene041293:intron | 15.0% |
| !!! | TTCATTTCATTTTGAATATT+TGG | + | chr7.2:66942373-66942392 | MS.gene041293:intron | 15.0% |
| !! | AATGACATAAAAGATATAGT+TGG | - | chr7.2:66942691-66942710 | None:intergenic | 20.0% |
| !! | CAATACTTCATTACAAAAAT+CGG | - | chr7.2:66941226-66941245 | None:intergenic | 20.0% |
| !!! | AGTCAATATTTTTGTTGTAA+CGG | + | chr7.2:66942659-66942678 | MS.gene041293:intron | 20.0% |
| !!! | ATATCTTTTATGTCATTTGT+AGG | + | chr7.2:66942694-66942713 | MS.gene041293:intron | 20.0% |
| !!! | GTTTGGAATTTGAAATTTAT+AGG | + | chr7.2:66940239-66940258 | MS.gene041293:intron | 20.0% |
| !!! | TAATGAAGTATTGAATTTGA+AGG | + | chr7.2:66941233-66941252 | MS.gene041293:intron | 20.0% |
| !!! | TATCTTTTATGTCATTTGTA+GGG | + | chr7.2:66942695-66942714 | MS.gene041293:intron | 20.0% |
| !!! | TTGAAAATTTTGCTTCATTT+TGG | + | chr7.2:66940602-66940621 | MS.gene041293:intron | 20.0% |
| ! | AAAATCAATAGAAAGGAAAC+TGG | - | chr7.2:66942330-66942349 | None:intergenic | 25.0% |
| ! | AGTCAAAAAAATACGAATCT+TGG | - | chr7.2:66942429-66942448 | None:intergenic | 25.0% |
| ! | ATCATCAATTAGAAAAAGGA+AGG | + | chr7.2:66943143-66943162 | MS.gene041293:CDS | 25.0% |
| ! | CAAACATGTTTATTATGCTA+TGG | + | chr7.2:66942168-66942187 | MS.gene041293:intron | 25.0% |
| ! | CAAGAAGATATAATCCTTTA+CGG | + | chr7.2:66941859-66941878 | MS.gene041293:CDS | 25.0% |
| ! | CTAATCAAAGATGATTTAAC+AGG | + | chr7.2:66939940-66939959 | MS.gene041293:CDS | 25.0% |
| ! | GCTTATATATTGACATAAAC+AGG | - | chr7.2:66941131-66941150 | None:intergenic | 25.0% |
| ! | GTTGATCATCAATTAGAAAA+AGG | + | chr7.2:66943139-66943158 | MS.gene041293:CDS | 25.0% |
| !! | AGAAGAGTCTAAAATATTGT+AGG | - | chr7.2:66942533-66942552 | None:intergenic | 25.0% |
| !!! | AAGTATTGAATTTGAAGGTA+TGG | + | chr7.2:66941238-66941257 | MS.gene041293:intron | 25.0% |
| !!! | ATACTGGTTTGACATATATA+AGG | + | chr7.2:66942002-66942021 | MS.gene041293:CDS | 25.0% |
| !!! | TATCTCTTTCAAGTAGTTTT+TGG | + | chr7.2:66940190-66940209 | MS.gene041293:intron | 25.0% |
| !!! | TCATTTTGGTTTTTGGTTTT+TGG | + | chr7.2:66940616-66940635 | MS.gene041293:intron | 25.0% |
| !!! | TCCTTTCTATTGATTTTCTT+TGG | + | chr7.2:66942333-66942352 | MS.gene041293:intron | 25.0% |
| !!! | TCTTTGATTAGTTTGTATGA+TGG | - | chr7.2:66939931-66939950 | None:intergenic | 25.0% |
| !!! | TGATTTGGAATTTTGAGAAA+TGG | + | chr7.2:66940684-66940703 | MS.gene041293:intron | 25.0% |
| !!! | TTTTGCTTCATTTTGGTTTT+TGG | + | chr7.2:66940609-66940628 | MS.gene041293:intron | 25.0% |
| !!! | TTTTTTGTTGTTGTGCTTTT+GGG | + | chr7.2:66940217-66940236 | MS.gene041293:intron | 25.0% |
| !!! | TTTTTTTCCATAAGCTATCA+TGG | + | chr7.2:66940427-66940446 | MS.gene041293:intron | 25.0% |
| !!! | TTTTTTTGTTGTTGTGCTTT+TGG | + | chr7.2:66940216-66940235 | MS.gene041293:intron | 25.0% |
| AAAAACTCGTCTTCTAGTAA+TGG | + | chr7.2:66943025-66943044 | MS.gene041293:CDS | 30.0% | |
| ACCTGAACAAAACTAGAAAA+TGG | + | chr7.2:66940907-66940926 | MS.gene041293:intron | 30.0% | |
| ATTGTTCTCATAAGCTATTG+TGG | + | chr7.2:66941018-66941037 | MS.gene041293:intron | 30.0% | |
| CATTGTTTGAATTGTGTTGT+TGG | + | chr7.2:66941277-66941296 | MS.gene041293:intron | 30.0% | |
| CCTGAACAAAACTAGAAAAT+GGG | + | chr7.2:66940908-66940927 | MS.gene041293:intron | 30.0% | |
| CTGAACAAAACTAGAAAATG+GGG | + | chr7.2:66940909-66940928 | MS.gene041293:intron | 30.0% | |
| GAATACATATTCAGATATCG+AGG | + | chr7.2:66941798-66941817 | MS.gene041293:CDS | 30.0% | |
| GCCAAAGAAAATCAATAGAA+AGG | - | chr7.2:66942337-66942356 | None:intergenic | 30.0% | |
| TCTCATTAGGTTAAGGAATT+AGG | - | chr7.2:66942065-66942084 | None:intergenic | 30.0% | |
| TTGATCATAAAGAGAGATCT+CGG | + | chr7.2:66943080-66943099 | MS.gene041293:CDS | 30.0% | |
| ! | AATTGTGTTGTTGGATTTCA+TGG | + | chr7.2:66941286-66941305 | MS.gene041293:intron | 30.0% |
| ! | GCAAACAAAAAGTGTAACAA+AGG | - | chr7.2:66942564-66942583 | None:intergenic | 30.0% |
| ! | TACTGTGTTTTGTAAGTGAT+TGG | + | chr7.2:66940708-66940727 | MS.gene041293:intron | 30.0% |
| ! | TCATAATCTCAACGTTTTCA+CGG | - | chr7.2:66939993-66940012 | None:intergenic | 30.0% |
| ! | TTTTGCATAGACATAACTTC+TGG | + | chr7.2:66942214-66942233 | MS.gene041293:intron | 30.0% |
| !! | GCTAAGTTATAATTTGTTGC+AGG | + | chr7.2:66941632-66941651 | MS.gene041293:intron | 30.0% |
| !! | TGATTAGTTTGTATGATGGT+GGG | - | chr7.2:66939927-66939946 | None:intergenic | 30.0% |
| !! | TTGATTAGTTTGTATGATGG+TGG | - | chr7.2:66939928-66939947 | None:intergenic | 30.0% |
| !!! | CATTTCACTTGTATCGATTT+TGG | - | chr7.2:66942599-66942618 | None:intergenic | 30.0% |
| !!! | TGGTATTGATGCTATTTTCA+AGG | + | chr7.2:66941312-66941331 | MS.gene041293:intron | 30.0% |
| !!! | TGGTTTTTGGTTTTTGGTTT+CGG | + | chr7.2:66940622-66940641 | MS.gene041293:intron | 30.0% |
| !!! | TTTTTTTCTTTTGACACCCT+TGG | + | chr7.2:66942303-66942322 | MS.gene041293:intron | 30.0% |
| AAAACAACAGCTCGTAATTG+AGG | - | chr7.2:66941931-66941950 | None:intergenic | 35.0% | |
| AGAACTGGACAATTAACTAG+TGG | - | chr7.2:66942126-66942145 | None:intergenic | 35.0% | |
| AGGTATGATTATTCTGGGTA+CGG | + | chr7.2:66941652-66941671 | MS.gene041293:intron | 35.0% | |
| ATGTGTCGTGAACATAAACT+TGG | - | chr7.2:66941433-66941452 | None:intergenic | 35.0% | |
| ATTGTTCTTGTAAGCTATCG+TGG | + | chr7.2:66940818-66940837 | MS.gene041293:intron | 35.0% | |
| CACATTAATAACCAGACAAG+AGG | + | chr7.2:66941448-66941467 | MS.gene041293:intron | 35.0% | |
| CTTACATGAACTATGAGAAC+TGG | - | chr7.2:66942141-66942160 | None:intergenic | 35.0% | |
| GAATATGTATTCTGCTCACT+TGG | - | chr7.2:66941790-66941809 | None:intergenic | 35.0% | |
| GTGATAGCTTGAACTTCAAA+TGG | - | chr7.2:66942629-66942648 | None:intergenic | 35.0% | |
| GTTGCAGGTATGATTATTCT+GGG | + | chr7.2:66941647-66941666 | MS.gene041293:intron | 35.0% | |
| GTTGTTGGATTTCATGGAAT+TGG | + | chr7.2:66941292-66941311 | MS.gene041293:intron | 35.0% | |
| TATTCTGCATATACGAACAC+AGG | - | chr7.2:66942092-66942111 | None:intergenic | 35.0% | |
| TCAACTCTTCTTTACTCTCA+TGG | + | chr7.2:66940075-66940094 | MS.gene041293:CDS | 35.0% | |
| TCGCGCATACATAAATTTGA+TGG | + | chr7.2:66941737-66941756 | MS.gene041293:intron | 35.0% | |
| TGTTGCAGGTATGATTATTC+TGG | + | chr7.2:66941646-66941665 | MS.gene041293:intron | 35.0% | |
| TGTTTATGTTCGTCATCCAA+TGG | + | chr7.2:66940047-66940066 | MS.gene041293:CDS | 35.0% | |
| TTCATTACAAAAATCGGACG+TGG | - | chr7.2:66941220-66941239 | None:intergenic | 35.0% | |
| ! | AAACAGGTCTAAGACTGTTT+GGG | - | chr7.2:66941115-66941134 | None:intergenic | 35.0% |
| ! | AAGTGTCTCGAAGAAAGTTT+TGG | + | chr7.2:66941829-66941848 | MS.gene041293:CDS | 35.0% |
| ! | CAAAAAGTGTAACAAAGGAC+AGG | - | chr7.2:66942559-66942578 | None:intergenic | 35.0% |
| ! | CCAGAAATTTTCATCACGAA+GGG | - | chr7.2:66941520-66941539 | None:intergenic | 35.0% |
| ! | TAAACAGGTCTAAGACTGTT+TGG | - | chr7.2:66941116-66941135 | None:intergenic | 35.0% |
| ! | TAGTAATGGTGGTGATATGT+TGG | + | chr7.2:66943039-66943058 | MS.gene041293:CDS | 35.0% |
| ! | TCCAGAAATTTTCATCACGA+AGG | - | chr7.2:66941521-66941540 | None:intergenic | 35.0% |
| !! | TCCAATACTTTCTGGCTTAA+GGG | + | chr7.2:66941957-66941976 | MS.gene041293:CDS | 35.0% |
| !!! | CCCATTTTCTAGTTTTGTTC+AGG | - | chr7.2:66940911-66940930 | None:intergenic | 35.0% |
| !!! | GGTTTTTGGTTTTTGGTTTC+GGG | + | chr7.2:66940623-66940642 | MS.gene041293:intron | 35.0% |
| AAAACATCCGTACTCTTTCG+AGG | - | chr7.2:66942935-66942954 | None:intergenic | 40.0% | |
| AACCAGTATGAACGCTTTAC+TGG | - | chr7.2:66941991-66942010 | None:intergenic | 40.0% | |
| AACTCGTCTTCTAGTAATGG+TGG | + | chr7.2:66943028-66943047 | MS.gene041293:CDS | 40.0% | |
| AAGAGAAATACGAACCACTG+TGG | + | chr7.2:66942774-66942793 | MS.gene041293:CDS | 40.0% | |
| ACTTGCGTGTTAATCTCATG+GGG | + | chr7.2:66940151-66940170 | MS.gene041293:CDS | 40.0% | |
| AGAAGAGTTGAAGTAGCCAT+TGG | - | chr7.2:66940066-66940085 | None:intergenic | 40.0% | |
| AGTGCGAAATGAGGATTTGT+GGG | + | chr7.2:66940661-66940680 | MS.gene041293:intron | 40.0% | |
| ATAGAAAGGAAACTGGACCA+AGG | - | chr7.2:66942323-66942342 | None:intergenic | 40.0% | |
| ATCCTTTACGGACAATCTGT+TGG | + | chr7.2:66941871-66941890 | MS.gene041293:CDS | 40.0% | |
| ATGAGGATTTGTGGGTGATT+TGG | + | chr7.2:66940669-66940688 | MS.gene041293:intron | 40.0% | |
| CACTTGCGTGTTAATCTCAT+GGG | + | chr7.2:66940150-66940169 | MS.gene041293:CDS | 40.0% | |
| CATGGTGAGTACAGAGTTTA+TGG | + | chr7.2:66940445-66940464 | MS.gene041293:intron | 40.0% | |
| CCCTTCGTGATGAAAATTTC+TGG | + | chr7.2:66941517-66941536 | MS.gene041293:intron | 40.0% | |
| CTTCAGATGCCTTATGTACT+CGG | - | chr7.2:66942837-66942856 | None:intergenic | 40.0% | |
| GAAGTTGTAGATTGTTCCCA+CGG | + | chr7.2:66942728-66942747 | MS.gene041293:CDS | 40.0% | |
| GTACTCACCATGATAGCTTA+TGG | - | chr7.2:66940437-66940456 | None:intergenic | 40.0% | |
| TAGAAAGGAAACTGGACCAA+GGG | - | chr7.2:66942322-66942341 | None:intergenic | 40.0% | |
| TAGCTGCAAGATCCAAAGTT+GGG | - | chr7.2:66941903-66941922 | None:intergenic | 40.0% | |
| TGCATTGAGCTCAACTTCAA+AGG | + | chr7.2:66941584-66941603 | MS.gene041293:intron | 40.0% | |
| TTCAGATGCCTTATGTACTC+GGG | - | chr7.2:66942836-66942855 | None:intergenic | 40.0% | |
| TTCCAACAGATTGTCCGTAA+AGG | - | chr7.2:66941876-66941895 | None:intergenic | 40.0% | |
| TTGCACAGTCCAATACTTTC+TGG | + | chr7.2:66941949-66941968 | MS.gene041293:CDS | 40.0% | |
| TTGGACAGACGACAAAATTG+TGG | - | chr7.2:66941414-66941433 | None:intergenic | 40.0% | |
| TTTGCTTAGAGTGCGAAATG+AGG | + | chr7.2:66940652-66940671 | MS.gene041293:intron | 40.0% | |
| ! | ACCCTTAAGCCAGAAAGTAT+TGG | - | chr7.2:66941961-66941980 | None:intergenic | 40.0% |
| ! | ATCCAGTAAAGCGTTCATAC+TGG | + | chr7.2:66941986-66942005 | MS.gene041293:CDS | 40.0% |
| !! | AGGAGCATCTCATTAGGTTA+AGG | - | chr7.2:66942072-66942091 | None:intergenic | 40.0% |
| !! | AGTTTGTATGATGGTGGGTT+TGG | - | chr7.2:66939922-66939941 | None:intergenic | 40.0% |
| !! | GTCCAATACTTTCTGGCTTA+AGG | + | chr7.2:66941956-66941975 | MS.gene041293:CDS | 40.0% |
| !!! | GACGAGTTTTTTACCTTCTC+TGG | - | chr7.2:66943016-66943035 | None:intergenic | 40.0% |
| !!! | TGTTGTTGTGCTTTTGGGTT+TGG | + | chr7.2:66940222-66940241 | MS.gene041293:intron | 40.0% |
| AGCAAGTTACTCCTCTTGTC+TGG | - | chr7.2:66941462-66941481 | None:intergenic | 45.0% | |
| AGCTCTTTCCCGAGTACATA+AGG | + | chr7.2:66942825-66942844 | MS.gene041293:CDS | 45.0% | |
| CAAAACGAGTGAGACTGCTT+GGG | - | chr7.2:66940500-66940519 | None:intergenic | 45.0% | |
| CAACTTTGGATCTTGCAGCT+AGG | + | chr7.2:66941902-66941921 | MS.gene041293:CDS | 45.0% | |
| CAGTCCTTATTCTGTCGAGT+CGG | - | chr7.2:66943180-66943199 | None:intergenic | 45.0% | |
| CCACTTGCGTGTTAATCTCA+TGG | + | chr7.2:66940149-66940168 | MS.gene041293:CDS | 45.0% | |
| CCATGAGATTAACACGCAAG+TGG | - | chr7.2:66940152-66940171 | None:intergenic | 45.0% | |
| CGCAAAGATACAGTTTCCGA+AGG | + | chr7.2:66942888-66942907 | MS.gene041293:CDS | 45.0% | |
| CGGAAACTGTATCTTTGCGA+CGG | - | chr7.2:66942887-66942906 | None:intergenic | 45.0% | |
| CTAGCTGCAAGATCCAAAGT+TGG | - | chr7.2:66941904-66941923 | None:intergenic | 45.0% | |
| CTGATCGTAGAGAAAAGCCA+AGG | + | chr7.2:66942975-66942994 | MS.gene041293:CDS | 45.0% | |
| GAGTGCGAAATGAGGATTTG+TGG | + | chr7.2:66940660-66940679 | MS.gene041293:intron | 45.0% | |
| GTTCTTGTAAGCTATCGTGG+AGG | + | chr7.2:66940821-66940840 | MS.gene041293:intron | 45.0% | |
| TACGGACAATCTGTTGGAAG+TGG | + | chr7.2:66941877-66941896 | MS.gene041293:CDS | 45.0% | |
| TGTGGAGACTGAAGAGCTTA+TGG | + | chr7.2:66941036-66941055 | MS.gene041293:intron | 45.0% | |
| ! | ACGTTTTCACGGTGAGGAAA+TGG | - | chr7.2:66939982-66940001 | None:intergenic | 45.0% |
| ! | ATCTCAACGTTTTCACGGTG+AGG | - | chr7.2:66939988-66940007 | None:intergenic | 45.0% |
| ! | CAAACTGGTCTGTACTCCTT+CGG | - | chr7.2:66942907-66942926 | None:intergenic | 45.0% |
| !! | GAAAGAGCTCTAAATCGCAG+TGG | - | chr7.2:66942814-66942833 | None:intergenic | 45.0% |
| !! | GAACACAGGAGCATCTCATT+AGG | - | chr7.2:66942078-66942097 | None:intergenic | 45.0% |
| !! | TTGACCGACTCGACAGAATA+AGG | + | chr7.2:66943173-66943192 | MS.gene041293:CDS | 45.0% |
| !! | TTGTATGATGGTGGGTTTGG+TGG | - | chr7.2:66939919-66939938 | None:intergenic | 45.0% |
| ATGAAACTTTCGACGCGTCG+AGG | + | chr7.2:66940009-66940028 | MS.gene041293:CDS | 50.0% | |
| CCAAAACGAGTGAGACTGCT+TGG | - | chr7.2:66940501-66940520 | None:intergenic | 50.0% | |
| CGACTCGACAGAATAAGGAC+TGG | + | chr7.2:66943178-66943197 | MS.gene041293:CDS | 50.0% | |
| GAGCACAGACAAACCAGAGA+AGG | + | chr7.2:66943000-66943019 | MS.gene041293:CDS | 50.0% | |
| GGTTTGTCTGTGCTCTTCCT+TGG | - | chr7.2:66942995-66943014 | None:intergenic | 50.0% | |
| TACGAACCACTGTGGCTCAA+AGG | + | chr7.2:66942782-66942801 | MS.gene041293:CDS | 50.0% | |
| TCTTTCGAGGCTGCTCAAAC+TGG | - | chr7.2:66942922-66942941 | None:intergenic | 50.0% | |
| TGAGCAGCCTCGAAAGAGTA+CGG | + | chr7.2:66942925-66942944 | MS.gene041293:CDS | 50.0% | |
| TGTTGGAAGTGGCCCAACTT+TGG | + | chr7.2:66941888-66941907 | MS.gene041293:CDS | 50.0% | |
| TTACCTCCTTTGAGCCACAG+TGG | - | chr7.2:66942791-66942810 | None:intergenic | 50.0% | |
| TTCCCACGGTAAGCAACTCT+GGG | + | chr7.2:66942742-66942761 | MS.gene041293:CDS | 50.0% | |
| TTCCCAGAGTTGCTTACCGT+GGG | - | chr7.2:66942747-66942766 | None:intergenic | 50.0% | |
| ! | CATGGTAACGCTGCTGATCT+GGG | + | chr7.2:66940093-66940112 | MS.gene041293:CDS | 50.0% |
| ! | CCAAGCAGTCTCACTCGTTT+TGG | + | chr7.2:66940498-66940517 | MS.gene041293:intron | 50.0% |
| ! | TCATGGTAACGCTGCTGATC+TGG | + | chr7.2:66940092-66940111 | MS.gene041293:CDS | 50.0% |
| !! | GCAGTCTCACTCGTTTTGGT+CGG | + | chr7.2:66940502-66940521 | MS.gene041293:intron | 50.0% |
| GAACCACTGTGGCTCAAAGG+AGG | + | chr7.2:66942785-66942804 | MS.gene041293:CDS | 55.0% | |
| GTACGGACAGTCGTCAGGAA+AGG | + | chr7.2:66941669-66941688 | MS.gene041293:CDS | 55.0% | |
| GTTCCCACGGTAAGCAACTC+TGG | + | chr7.2:66942741-66942760 | MS.gene041293:CDS | 55.0% | |
| GTTCCCAGAGTTGCTTACCG+TGG | - | chr7.2:66942748-66942767 | None:intergenic | 55.0% | |
| TCTGGGTACGGACAGTCGTC+AGG | + | chr7.2:66941664-66941683 | MS.gene041293:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 66939892 | 66943204 | 66939892 | ID=MS.gene041293 |
| chr7.2 | mRNA | 66939892 | 66943204 | 66939892 | ID=MS.gene041293.t1;Parent=MS.gene041293 |
| chr7.2 | exon | 66939892 | 66940172 | 66939892 | ID=MS.gene041293.t1.exon1;Parent=MS.gene041293.t1 |
| chr7.2 | CDS | 66939892 | 66940172 | 66939892 | ID=cds.MS.gene041293.t1;Parent=MS.gene041293.t1 |
| chr7.2 | exon | 66941654 | 66941690 | 66941654 | ID=MS.gene041293.t1.exon2;Parent=MS.gene041293.t1 |
| chr7.2 | CDS | 66941654 | 66941690 | 66941654 | ID=cds.MS.gene041293.t1;Parent=MS.gene041293.t1 |
| chr7.2 | exon | 66941787 | 66942023 | 66941787 | ID=MS.gene041293.t1.exon3;Parent=MS.gene041293.t1 |
| chr7.2 | CDS | 66941787 | 66942023 | 66941787 | ID=cds.MS.gene041293.t1;Parent=MS.gene041293.t1 |
| chr7.2 | exon | 66942108 | 66942155 | 66942108 | ID=MS.gene041293.t1.exon4;Parent=MS.gene041293.t1 |
| chr7.2 | CDS | 66942108 | 66942155 | 66942108 | ID=cds.MS.gene041293.t1;Parent=MS.gene041293.t1 |
| chr7.2 | exon | 66942716 | 66943204 | 66942716 | ID=MS.gene041293.t1.exon5;Parent=MS.gene041293.t1 |
| chr7.2 | CDS | 66942716 | 66943204 | 66942716 | ID=cds.MS.gene041293.t1;Parent=MS.gene041293.t1 |
| Gene Sequence |
| Protein sequence |
