Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04131.t1 | XP_003600432.1 | 95.1 | 308 | 13 | 1 | 7 | 314 | 25 | 330 | 2.40E-161 | 578.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04131.t1 | Q680K8 | 68.7 | 291 | 88 | 3 | 25 | 314 | 41 | 329 | 1.2e-110 | 401.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04131.t1 | G7IY69 | 95.1 | 308 | 13 | 1 | 7 | 314 | 25 | 330 | 1.7e-161 | 578.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04131.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76479 | MS.gene04131 | PPI |
| MS.gene039084 | MS.gene04131 | PPI |
| MS.gene54146 | MS.gene04131 | PPI |
| MS.gene04131 | MS.gene039090 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04131.t1 | MTR_3g061090 | 95.130 | 308 | 13 | 1 | 7 | 314 | 25 | 330 | 0.0 | 596 |
| MS.gene04131.t1 | MTR_3g061090 | 99.612 | 258 | 1 | 0 | 57 | 314 | 1 | 258 | 0.0 | 529 |
| MS.gene04131.t1 | MTR_5g096700 | 63.668 | 289 | 102 | 3 | 25 | 312 | 43 | 329 | 2.75e-126 | 364 |
| MS.gene04131.t1 | MTR_5g096700 | 64.706 | 272 | 93 | 3 | 42 | 312 | 1 | 270 | 3.92e-121 | 348 |
| MS.gene04131.t1 | MTR_1g029850 | 46.926 | 309 | 158 | 3 | 7 | 312 | 23 | 328 | 2.31e-97 | 290 |
| MS.gene04131.t1 | MTR_3g088560 | 48.684 | 304 | 150 | 5 | 7 | 308 | 22 | 321 | 1.80e-95 | 285 |
| MS.gene04131.t1 | MTR_3g088560 | 51.046 | 239 | 115 | 2 | 72 | 308 | 13 | 251 | 9.85e-81 | 245 |
| MS.gene04131.t1 | MTR_3g088560 | 51.695 | 236 | 112 | 2 | 75 | 308 | 31 | 266 | 3.53e-80 | 244 |
| MS.gene04131.t1 | MTR_5g096790 | 48.929 | 280 | 123 | 6 | 34 | 308 | 58 | 322 | 1.30e-74 | 232 |
| MS.gene04131.t1 | MTR_3g088560 | 53.030 | 198 | 91 | 2 | 113 | 308 | 2 | 199 | 1.43e-65 | 205 |
| MS.gene04131.t1 | MTR_3g072160 | 30.108 | 186 | 122 | 4 | 118 | 295 | 66 | 251 | 1.28e-11 | 64.3 |
| MS.gene04131.t1 | MTR_7g094490 | 27.815 | 151 | 94 | 3 | 139 | 276 | 197 | 345 | 1.31e-11 | 65.1 |
| MS.gene04131.t1 | MTR_1g072650 | 28.289 | 152 | 94 | 3 | 139 | 277 | 201 | 350 | 1.56e-11 | 65.1 |
| MS.gene04131.t1 | MTR_3g072160 | 32.143 | 168 | 106 | 4 | 118 | 277 | 29 | 196 | 1.84e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04131.t1 | AT1G55760 | 67.101 | 307 | 95 | 5 | 9 | 314 | 28 | 329 | 1.12e-146 | 416 |
| MS.gene04131.t1 | AT1G21780 | 48.039 | 306 | 155 | 3 | 7 | 312 | 23 | 324 | 9.89e-101 | 299 |
| MS.gene04131.t1 | AT1G21780 | 48.039 | 306 | 155 | 3 | 7 | 312 | 23 | 324 | 9.89e-101 | 299 |
| MS.gene04131.t1 | AT1G01640 | 30.366 | 191 | 128 | 4 | 126 | 313 | 1 | 189 | 6.24e-16 | 75.5 |
| MS.gene04131.t1 | AT1G01640 | 30.588 | 170 | 113 | 4 | 147 | 313 | 1 | 168 | 2.27e-13 | 67.8 |
| MS.gene04131.t1 | AT3G03740 | 34.177 | 158 | 87 | 4 | 133 | 274 | 199 | 355 | 1.83e-12 | 68.2 |
| MS.gene04131.t1 | AT3G56230 | 30.247 | 162 | 109 | 3 | 136 | 293 | 98 | 259 | 2.32e-12 | 66.6 |
| MS.gene04131.t1 | AT2G40450 | 32.540 | 126 | 74 | 4 | 130 | 244 | 4 | 129 | 8.83e-12 | 63.9 |
| MS.gene04131.t1 | AT2G39760 | 27.703 | 148 | 96 | 1 | 139 | 275 | 184 | 331 | 7.69e-11 | 62.8 |
| MS.gene04131.t1 | AT2G39760 | 27.703 | 148 | 96 | 1 | 139 | 275 | 184 | 331 | 7.94e-11 | 62.8 |
| MS.gene04131.t1 | AT2G39760 | 27.703 | 148 | 96 | 1 | 139 | 275 | 184 | 331 | 7.94e-11 | 62.8 |
Find 62 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTGAGGTTCCACTTTC+TGG | 0.064092 | 3.2:+52161791 | MS.gene04131:CDS |
| CTTGTAACATTGGATATTTC+AGG | 0.153912 | 3.2:-52161261 | None:intergenic |
| ATCCAGTATCTTGTTAAATT+TGG | 0.170654 | 3.2:+52162989 | MS.gene04131:CDS |
| TGGTAAAATATTTGAAATTC+AGG | 0.193894 | 3.2:+52163009 | MS.gene04131:CDS |
| ATCTCATCGCTGAAGTCTTT+GGG | 0.249673 | 3.2:+52163068 | MS.gene04131:CDS |
| CGACATGTCTGTGATGTTTA+TGG | 0.299134 | 3.2:-52162741 | None:intergenic |
| GATCTCATCGCTGAAGTCTT+TGG | 0.302318 | 3.2:+52163067 | MS.gene04131:CDS |
| GAAGTCTTTGGGGAAGTTCT+TGG | 0.305595 | 3.2:+52163079 | MS.gene04131:CDS |
| TTCCTTGATTTGAAGATTGC+AGG | 0.320978 | 3.2:+52161836 | MS.gene04131:CDS |
| TGAGATCCCTGTCCGCGTTT+TGG | 0.322271 | 3.2:-52163051 | None:intergenic |
| TACCAAATTTAACAAGATAC+TGG | 0.332501 | 3.2:-52162991 | None:intergenic |
| TTGGGGAAGTTCTTGGTGCC+TGG | 0.360323 | 3.2:+52163086 | MS.gene04131:CDS |
| TTCAAAATGCATCACTATAT+CGG | 0.365062 | 3.2:+52162942 | MS.gene04131:CDS |
| CGATCTTCAATATCCTTTCC+AGG | 0.370344 | 3.2:-52163104 | None:intergenic |
| GATCATGTGAAAACATGCTT+TGG | 0.394824 | 3.2:-52162697 | None:intergenic |
| GTGGAGAACCTTGCTCCATA+TGG | 0.419745 | 3.2:+52162516 | MS.gene04131:CDS |
| AAATCCTTCACCTCCCCATA+TGG | 0.441714 | 3.2:-52162531 | None:intergenic |
| TATTCCTCCAAAACGCGGAC+AGG | 0.453494 | 3.2:+52163044 | MS.gene04131:CDS |
| AGTCAACAACCTGGGAAAGC+CGG | 0.460730 | 3.2:+52160596 | MS.gene04131:CDS |
| AGGATTATCTCTTGTAACAT+TGG | 0.466890 | 3.2:-52161271 | None:intergenic |
| GCAAAAGCCCTAGGGTCTCT+TGG | 0.476148 | 3.2:+52162572 | MS.gene04131:CDS |
| GTCAACAACCTGGGAAAGCC+GGG | 0.479947 | 3.2:+52160597 | MS.gene04131:CDS |
| TGGAGAACCTTGCTCCATAT+GGG | 0.482149 | 3.2:+52162517 | MS.gene04131:CDS |
| CATGTCGATTGAAGTATGTC+AGG | 0.482314 | 3.2:+52162757 | MS.gene04131:CDS |
| AATGCTTCTGATGGAAGTAT+AGG | 0.485034 | 3.2:+52162635 | MS.gene04131:CDS |
| AAAACTCTCCCGGCTTTCCC+AGG | 0.488012 | 3.2:-52160605 | None:intergenic |
| GCTTTGGAAGACAGGTGAAC+GGG | 0.489275 | 3.2:-52162681 | None:intergenic |
| CGAAAAGCTCTCACTCATCC+AGG | 0.490220 | 3.2:+52161342 | MS.gene04131:CDS |
| GGCCTGCAATCTTCAAATCA+AGG | 0.500364 | 3.2:-52161838 | None:intergenic |
| TGCTCCATATGGGGAGGTGA+AGG | 0.508973 | 3.2:+52162527 | MS.gene04131:CDS |
| GCATCCTACCAAGAGACCCT+AGG | 0.531172 | 3.2:-52162580 | None:intergenic |
| ATCACAATCAATGCTTCTGA+TGG | 0.531417 | 3.2:+52162626 | MS.gene04131:CDS |
| AGATCGAACGCAAAAGCCCT+AGG | 0.533227 | 3.2:+52162563 | MS.gene04131:CDS |
| GAAGTTCTTGGTGCCTGGAA+AGG | 0.537759 | 3.2:+52163091 | MS.gene04131:CDS |
| CGCATGATAAAAGAAGCAAT+TGG | 0.545571 | 3.2:-52161294 | None:intergenic |
| GAAAACATGCTTTGGAAGAC+AGG | 0.551570 | 3.2:-52162689 | None:intergenic |
| ATGAAGAATTTCTGACACAT+AGG | 0.551928 | 3.2:+52162813 | MS.gene04131:CDS |
| ATGATAAAAGAAGCAATTGG+AGG | 0.567311 | 3.2:-52161291 | None:intergenic |
| AAGCCCTAGGGTCTCTTGGT+AGG | 0.567778 | 3.2:+52162576 | MS.gene04131:CDS |
| ATGAAGAGAAACGAGGATTG+TGG | 0.569942 | 3.2:+52160566 | MS.gene04131:CDS |
| TATCTTCTAGAAGACTCTCA+TGG | 0.579860 | 3.2:-52162892 | None:intergenic |
| ATTCCTCCAAAACGCGGACA+GGG | 0.581021 | 3.2:+52163045 | MS.gene04131:CDS |
| CATCCTACCAAGAGACCCTA+GGG | 0.591086 | 3.2:-52162579 | None:intergenic |
| TTCTAGAAGACTCTCATGGA+TGG | 0.591651 | 3.2:-52162888 | None:intergenic |
| CGTGTGGTTAGTTCTGCTCA+TGG | 0.593078 | 3.2:+52161315 | MS.gene04131:CDS |
| TCTCATCGCTGAAGTCTTTG+GGG | 0.603546 | 3.2:+52163069 | MS.gene04131:CDS |
| GGGAGGTGAAGGATTTACTC+AGG | 0.606137 | 3.2:+52162538 | MS.gene04131:CDS |
| TGTGAAATGAAGGTATTTGT+CGG | 0.609961 | 3.2:+52161203 | MS.gene04131:intron |
| GGAAGAAAGAGTCAACAACC+TGG | 0.613447 | 3.2:+52160587 | MS.gene04131:CDS |
| TCACCTCCCCATATGGAGCA+AGG | 0.618213 | 3.2:-52162524 | None:intergenic |
| TGCTTTGGAAGACAGGTGAA+CGG | 0.624572 | 3.2:-52162682 | None:intergenic |
| GGAGAACCTTGCTCCATATG+GGG | 0.628222 | 3.2:+52162518 | MS.gene04131:CDS |
| CTTGGTAGGATGCTAAGAGA+AGG | 0.634500 | 3.2:+52162590 | MS.gene04131:CDS |
| CAATTTATTCCTCCAAAACG+CGG | 0.648608 | 3.2:+52163039 | MS.gene04131:CDS |
| GAAGAAAGAGTCAACAACCT+GGG | 0.649051 | 3.2:+52160588 | MS.gene04131:CDS |
| GATCGAACGCAAAAGCCCTA+GGG | 0.649072 | 3.2:+52162564 | MS.gene04131:CDS |
| GAACCTTGCTCCATATGGGG+AGG | 0.663188 | 3.2:+52162521 | MS.gene04131:CDS |
| CGACATATCTGACTTGAGAG+AGG | 0.668882 | 3.2:+52162865 | MS.gene04131:CDS |
| GAAATGAAGGTATTTGTCGG+TGG | 0.696589 | 3.2:+52161206 | MS.gene04131:intron |
| GCTAGCGCTTCTGCATGCAG+CGG | 0.709404 | 3.2:+52162835 | MS.gene04131:CDS |
| TTTGTCGGTGGAGAAACACA+AGG | 0.725214 | 3.2:+52161218 | MS.gene04131:CDS |
| GATTCATATGAAGAGAAACG+AGG | 0.748404 | 3.2:+52160559 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTCAATACATTATTAT+AGG | + | chr3.2:52162493-52162512 | MS.gene04131:intron | 10.0% |
| !!! | ATTTTCAATACATTATTATA+GGG | + | chr3.2:52162494-52162513 | MS.gene04131:intron | 10.0% |
| !!! | ATATATATCATTTTTAATGC+AGG | + | chr3.2:52160892-52160911 | MS.gene04131:intron | 15.0% |
| !!! | ATTGTTGATAAAGTTTATTT+GGG | + | chr3.2:52162121-52162140 | MS.gene04131:intron | 15.0% |
| !!! | GTTTTGTATATTATAAAGTT+TGG | + | chr3.2:52161101-52161120 | MS.gene04131:intron | 15.0% |
| !!! | TAATTATTATTGATTTTCTG+TGG | + | chr3.2:52161888-52161907 | MS.gene04131:intron | 15.0% |
| !! | ATATTATAGTACATCAAACA+GGG | + | chr3.2:52162080-52162099 | MS.gene04131:intron | 20.0% |
| !! | CAAAACAAGAAATTAATCAA+CGG | - | chr3.2:52161716-52161735 | None:intergenic | 20.0% |
| !! | GAAAATTAACATTTCAAACA+AGG | - | chr3.2:52162480-52162499 | None:intergenic | 20.0% |
| !! | TATATTATAGTACATCAAAC+AGG | + | chr3.2:52162079-52162098 | MS.gene04131:intron | 20.0% |
| !! | TGCAAATGTTAATCATTTAT+AGG | + | chr3.2:52161918-52161937 | MS.gene04131:intron | 20.0% |
| !!! | CATTGTTGATAAAGTTTATT+TGG | + | chr3.2:52162120-52162139 | MS.gene04131:intron | 20.0% |
| !!! | TGGTAAAATATTTGAAATTC+AGG | + | chr3.2:52163009-52163028 | MS.gene04131:CDS | 20.0% |
| !!! | TGTGTAAAACATTTTTAAAC+TGG | - | chr3.2:52161454-52161473 | None:intergenic | 20.0% |
| !!! | TGTTATTTCAATTTTTCTTG+TGG | + | chr3.2:52161394-52161413 | MS.gene04131:intron | 20.0% |
| ! | AAACATGTGCTAAAAAAAAG+TGG | + | chr3.2:52161006-52161025 | MS.gene04131:intron | 25.0% |
| ! | AAATTAATCAACGGAAGAAA+TGG | - | chr3.2:52161707-52161726 | None:intergenic | 25.0% |
| ! | AACATGTGCTAAAAAAAAGT+GGG | + | chr3.2:52161007-52161026 | MS.gene04131:intron | 25.0% |
| ! | ATAATGATTCCCTCAAATAT+TGG | - | chr3.2:52162391-52162410 | None:intergenic | 25.0% |
| ! | ATACAAAAAATGTACTTGAG+AGG | + | chr3.2:52162918-52162937 | MS.gene04131:CDS | 25.0% |
| ! | ATCACAACATCATATTGAAT+TGG | + | chr3.2:52162424-52162443 | MS.gene04131:intron | 25.0% |
| ! | ATCCAGTATCTTGTTAAATT+TGG | + | chr3.2:52162989-52163008 | MS.gene04131:CDS | 25.0% |
| ! | GTTAATCATTTATAGGCAAT+TGG | + | chr3.2:52161925-52161944 | MS.gene04131:intron | 25.0% |
| ! | TACCAAATTTAACAAGATAC+TGG | - | chr3.2:52162994-52163013 | None:intergenic | 25.0% |
| ! | TATGCTCATGATAATAAAAG+TGG | - | chr3.2:52162004-52162023 | None:intergenic | 25.0% |
| ! | TATTATAGTACATCAAACAG+GGG | + | chr3.2:52162081-52162100 | MS.gene04131:intron | 25.0% |
| ! | TTCAAAATGCATCACTATAT+CGG | + | chr3.2:52162942-52162961 | MS.gene04131:CDS | 25.0% |
| ! | TTCAATACATTATTATAGGG+TGG | + | chr3.2:52162497-52162516 | MS.gene04131:intron | 25.0% |
| ! | TTTAGCACATGTTTAGATTA+CGG | - | chr3.2:52161000-52161019 | None:intergenic | 25.0% |
| !! | AGTTTAGCAGAAATCAATTT+TGG | + | chr3.2:52161956-52161975 | MS.gene04131:intron | 25.0% |
| !! | CTTTTCTCAATTATCTTTAC+GGG | + | chr3.2:52162780-52162799 | MS.gene04131:CDS | 25.0% |
| !! | GCTTTTCTCAATTATCTTTA+CGG | + | chr3.2:52162779-52162798 | MS.gene04131:CDS | 25.0% |
| !! | GTTTAGCAGAAATCAATTTT+GGG | + | chr3.2:52161957-52161976 | MS.gene04131:intron | 25.0% |
| !! | TTTAGCAGAAATCAATTTTG+GGG | + | chr3.2:52161958-52161977 | MS.gene04131:intron | 25.0% |
| !!! | AATCAGAATTTTGATTTACC+TGG | - | chr3.2:52161363-52161382 | None:intergenic | 25.0% |
| !!! | ATCAATTTTGGGGTAATAAT+TGG | + | chr3.2:52161968-52161987 | MS.gene04131:intron | 25.0% |
| !!! | ATTATAGCACTGATAATTGT+TGG | - | chr3.2:52162308-52162327 | None:intergenic | 25.0% |
| !!! | CATGTAGTTTTTTATGTTGT+TGG | + | chr3.2:52161620-52161639 | MS.gene04131:intron | 25.0% |
| !!! | TTTTTTGCAAGACACTTATA+AGG | + | chr3.2:52161124-52161143 | MS.gene04131:intron | 25.0% |
| AAAGTGCAACTGATATTTCA+TGG | - | chr3.2:52160656-52160675 | None:intergenic | 30.0% | |
| AAATCTGATCCTTTCAAGAT+TGG | + | chr3.2:52160774-52160793 | MS.gene04131:intron | 30.0% | |
| AAGTCTTAAGCATATACATC+TGG | - | chr3.2:52161863-52161882 | None:intergenic | 30.0% | |
| ACAACATCATATTGAATTGG+TGG | + | chr3.2:52162427-52162446 | MS.gene04131:intron | 30.0% | |
| ACATGTGCTAAAAAAAAGTG+GGG | + | chr3.2:52161008-52161027 | MS.gene04131:intron | 30.0% | |
| AGAGAATCAGTCATTCTATT+TGG | - | chr3.2:52160684-52160703 | None:intergenic | 30.0% | |
| AGGATTATCTCTTGTAACAT+TGG | - | chr3.2:52161274-52161293 | None:intergenic | 30.0% | |
| AGTCTTAAGCATATACATCT+GGG | - | chr3.2:52161862-52161881 | None:intergenic | 30.0% | |
| ATCAGTCATTCTATTTGGAA+AGG | - | chr3.2:52160679-52160698 | None:intergenic | 30.0% | |
| ATGAAGAATTTCTGACACAT+AGG | + | chr3.2:52162813-52162832 | MS.gene04131:CDS | 30.0% | |
| ATGATAAAAGAAGCAATTGG+AGG | - | chr3.2:52161294-52161313 | None:intergenic | 30.0% | |
| CAAAATCCAGTTCATTTCTA+CGG | + | chr3.2:52162362-52162381 | MS.gene04131:intron | 30.0% | |
| CTTGTAACATTGGATATTTC+AGG | - | chr3.2:52161264-52161283 | None:intergenic | 30.0% | |
| GATCACAAAACATATGTACT+AGG | - | chr3.2:52160925-52160944 | None:intergenic | 30.0% | |
| TCAAATCTATTTAGCCATGT+GGG | - | chr3.2:52161067-52161086 | None:intergenic | 30.0% | |
| TTCAAATCTATTTAGCCATG+TGG | - | chr3.2:52161068-52161087 | None:intergenic | 30.0% | |
| ! | AGAGCAATGAAGATTTTGTT+TGG | + | chr3.2:52161768-52161787 | MS.gene04131:CDS | 30.0% |
| ! | ATGATGAATTTTCCAGAAAG+TGG | - | chr3.2:52161806-52161825 | None:intergenic | 30.0% |
| ! | GGACAATTCAGATTTTAAAC+TGG | + | chr3.2:52162222-52162241 | MS.gene04131:intron | 30.0% |
| ! | GTACATATGTTTTGTGATCA+CGG | + | chr3.2:52160926-52160945 | MS.gene04131:intron | 30.0% |
| ! | TCATTGGTGATTATGATGAA+AGG | - | chr3.2:52162036-52162055 | None:intergenic | 30.0% |
| !! | AGATTTTGTTTGGTCAATTG+AGG | + | chr3.2:52161778-52161797 | MS.gene04131:CDS | 30.0% |
| !! | GTTTTTGTTGGAAGGTATAT+TGG | + | chr3.2:52160623-52160642 | MS.gene04131:intron | 30.0% |
| !! | TGTGAAATGAAGGTATTTGT+CGG | + | chr3.2:52161203-52161222 | MS.gene04131:intron | 30.0% |
| AAAAAAAAGTGGGGTTGTGT+TGG | + | chr3.2:52161017-52161036 | MS.gene04131:intron | 35.0% | |
| ATCACAATCAATGCTTCTGA+TGG | + | chr3.2:52162626-52162645 | MS.gene04131:CDS | 35.0% | |
| ATCCTTTCAAGATTGGTATC+TGG | + | chr3.2:52160781-52160800 | MS.gene04131:intron | 35.0% | |
| CAATTTATTCCTCCAAAACG+CGG | + | chr3.2:52163039-52163058 | MS.gene04131:CDS | 35.0% | |
| CGCATGATAAAAGAAGCAAT+TGG | - | chr3.2:52161297-52161316 | None:intergenic | 35.0% | |
| CTGACTAATGCATGGAAAAT+TGG | + | chr3.2:52161560-52161579 | MS.gene04131:intron | 35.0% | |
| GATCATGTGAAAACATGCTT+TGG | - | chr3.2:52162700-52162719 | None:intergenic | 35.0% | |
| GCAAGACACTTATAAGGAAT+TGG | + | chr3.2:52161130-52161149 | MS.gene04131:intron | 35.0% | |
| TAATCACTCTGCTTCATCAT+TGG | - | chr3.2:52162052-52162071 | None:intergenic | 35.0% | |
| TCAATGGAGAATCGATAACT+TGG | + | chr3.2:52160734-52160753 | MS.gene04131:intron | 35.0% | |
| TCTAATGTCATACGCATGAT+TGG | + | chr3.2:52161527-52161546 | MS.gene04131:intron | 35.0% | |
| TCTTGTGGATAGAGAACTAT+CGG | + | chr3.2:52161409-52161428 | MS.gene04131:intron | 35.0% | |
| TGTTGTTGTGTGTGAAATGA+AGG | + | chr3.2:52161193-52161212 | MS.gene04131:intron | 35.0% | |
| TTCCAGATACCAATCTTGAA+AGG | - | chr3.2:52160786-52160805 | None:intergenic | 35.0% | |
| ! | AAATCAGCATGTTTTCTGCA+CGG | + | chr3.2:52162270-52162289 | MS.gene04131:intron | 35.0% |
| ! | AATGCTTCTGATGGAAGTAT+AGG | + | chr3.2:52162635-52162654 | MS.gene04131:CDS | 35.0% |
| ! | CGTAGAAATGAACTGGATTT+TGG | - | chr3.2:52162364-52162383 | None:intergenic | 35.0% |
| ! | TATCTTCTAGAAGACTCTCA+TGG | - | chr3.2:52162895-52162914 | None:intergenic | 35.0% |
| ! | TCAAGATTGGTATCTGGAAT+TGG | + | chr3.2:52160787-52160806 | MS.gene04131:intron | 35.0% |
| ! | TTCCTTGATTTGAAGATTGC+AGG | + | chr3.2:52161836-52161855 | MS.gene04131:CDS | 35.0% |
| !! | GTTGTTGGTTGCAAGTTTTA+CGG | + | chr3.2:52161635-52161654 | MS.gene04131:intron | 35.0% |
| AAAAATTGAGACAGCCCACA+TGG | + | chr3.2:52161050-52161069 | MS.gene04131:intron | 40.0% | |
| ATCTCATCGCTGAAGTCTTT+GGG | + | chr3.2:52163068-52163087 | MS.gene04131:CDS | 40.0% | |
| ATGAAGAGAAACGAGGATTG+TGG | + | chr3.2:52160566-52160585 | MS.gene04131:CDS | 40.0% | |
| CGACATGTCTGTGATGTTTA+TGG | - | chr3.2:52162744-52162763 | None:intergenic | 40.0% | |
| CGGTGAATTTGTCAGAATCA+CGG | - | chr3.2:52160980-52160999 | None:intergenic | 40.0% | |
| GAAGAAAGAGTCAACAACCT+GGG | + | chr3.2:52160588-52160607 | MS.gene04131:CDS | 40.0% | |
| TATAGTACATCAAACAGGGG+AGG | + | chr3.2:52162084-52162103 | MS.gene04131:intron | 40.0% | |
| TCAATTGAGGTTCCACTTTC+TGG | + | chr3.2:52161791-52161810 | MS.gene04131:CDS | 40.0% | |
| TTATTTGGGCAGCAGTTCAT+TGG | + | chr3.2:52162135-52162154 | MS.gene04131:intron | 40.0% | |
| ! | ATACGCATGATTGGTTGTGA+TGG | + | chr3.2:52161536-52161555 | MS.gene04131:intron | 40.0% |
| ! | CATGTCGATTGAAGTATGTC+AGG | + | chr3.2:52162757-52162776 | MS.gene04131:CDS | 40.0% |
| ! | TACGCATGATTGGTTGTGAT+GGG | + | chr3.2:52161537-52161556 | MS.gene04131:intron | 40.0% |
| ! | TGCTTCTTTTATCATGCGTG+TGG | + | chr3.2:52161299-52161318 | MS.gene04131:CDS | 40.0% |
| ! | TTCTAGAAGACTCTCATGGA+TGG | - | chr3.2:52162891-52162910 | None:intergenic | 40.0% |
| !! | GAAAACATGCTTTGGAAGAC+AGG | - | chr3.2:52162692-52162711 | None:intergenic | 40.0% |
| !! | GAAATGAAGGTATTTGTCGG+TGG | + | chr3.2:52161206-52161225 | MS.gene04131:intron | 40.0% |
| !!! | GGATTTTGATTGCCTGTAGT+CGG | + | chr3.2:52162156-52162175 | MS.gene04131:intron | 40.0% |
| AAATCCTTCACCTCCCCATA+TGG | - | chr3.2:52162534-52162553 | None:intergenic | 45.0% | |
| AGTCGGAATCCTGTGTATTC+AGG | + | chr3.2:52162173-52162192 | MS.gene04131:intron | 45.0% | |
| ATACACAGGATTCCGACTAC+AGG | - | chr3.2:52162171-52162190 | None:intergenic | 45.0% | |
| ATCCTGTGTATTCAGGACAG+CGG | + | chr3.2:52162180-52162199 | MS.gene04131:intron | 45.0% | |
| ATTCTCCATTGAGCAAGACG+TGG | - | chr3.2:52160726-52160745 | None:intergenic | 45.0% | |
| CCTTCCAACAAAAACTCTCC+CGG | - | chr3.2:52160618-52160637 | None:intergenic | 45.0% | |
| CTACGGCGACCAATATTTGA+GGG | + | chr3.2:52162379-52162398 | MS.gene04131:intron | 45.0% | |
| CTTGGTAGGATGCTAAGAGA+AGG | + | chr3.2:52162590-52162609 | MS.gene04131:CDS | 45.0% | |
| GATCTCATCGCTGAAGTCTT+TGG | + | chr3.2:52163067-52163086 | MS.gene04131:CDS | 45.0% | |
| GGAAGAAAGAGTCAACAACC+TGG | + | chr3.2:52160587-52160606 | MS.gene04131:CDS | 45.0% | |
| GGCCTGCAATCTTCAAATCA+AGG | - | chr3.2:52161841-52161860 | None:intergenic | 45.0% | |
| TCTACGGCGACCAATATTTG+AGG | + | chr3.2:52162378-52162397 | MS.gene04131:intron | 45.0% | |
| TCTCATCGCTGAAGTCTTTG+GGG | + | chr3.2:52163069-52163088 | MS.gene04131:CDS | 45.0% | |
| TGCAAGAATGCACGAGATGT+TGG | + | chr3.2:52162328-52162347 | MS.gene04131:intron | 45.0% | |
| TGGAGAACCTTGCTCCATAT+GGG | + | chr3.2:52162517-52162536 | MS.gene04131:CDS | 45.0% | |
| TTTGTCGGTGGAGAAACACA+AGG | + | chr3.2:52161218-52161237 | MS.gene04131:CDS | 45.0% | |
| ! | AAAGCCGGGAGAGTTTTTGT+TGG | + | chr3.2:52160611-52160630 | MS.gene04131:CDS | 45.0% |
| ! | CGACATATCTGACTTGAGAG+AGG | + | chr3.2:52162865-52162884 | MS.gene04131:CDS | 45.0% |
| ! | GAAGTCTTTGGGGAAGTTCT+TGG | + | chr3.2:52163079-52163098 | MS.gene04131:CDS | 45.0% |
| !! | GGTGGATGATGGATCAAGAT+CGG | + | chr3.2:52162201-52162220 | MS.gene04131:intron | 45.0% |
| !! | TGCTTTGGAAGACAGGTGAA+CGG | - | chr3.2:52162685-52162704 | None:intergenic | 45.0% |
| AGATCGAACGCAAAAGCCCT+AGG | + | chr3.2:52162563-52162582 | MS.gene04131:CDS | 50.0% | |
| AGTCAACAACCTGGGAAAGC+CGG | + | chr3.2:52160596-52160615 | MS.gene04131:CDS | 50.0% | |
| ATTCCTCCAAAACGCGGACA+GGG | + | chr3.2:52163045-52163064 | MS.gene04131:CDS | 50.0% | |
| CAACTCCACGTCTTGCTCAA+TGG | + | chr3.2:52160718-52160737 | MS.gene04131:intron | 50.0% | |
| CATCCTACCAAGAGACCCTA+GGG | - | chr3.2:52162582-52162601 | None:intergenic | 50.0% | |
| CGAAAAGCTCTCACTCATCC+AGG | + | chr3.2:52161342-52161361 | MS.gene04131:CDS | 50.0% | |
| GATCGAACGCAAAAGCCCTA+GGG | + | chr3.2:52162564-52162583 | MS.gene04131:CDS | 50.0% | |
| GGAGAACCTTGCTCCATATG+GGG | + | chr3.2:52162518-52162537 | MS.gene04131:CDS | 50.0% | |
| GGGAGGTGAAGGATTTACTC+AGG | + | chr3.2:52162538-52162557 | MS.gene04131:CDS | 50.0% | |
| GTGGAGAACCTTGCTCCATA+TGG | + | chr3.2:52162516-52162535 | MS.gene04131:CDS | 50.0% | |
| TATTCCTCCAAAACGCGGAC+AGG | + | chr3.2:52163044-52163063 | MS.gene04131:CDS | 50.0% | |
| TGGTCGCCGTAGAAATGAAC+TGG | - | chr3.2:52162371-52162390 | None:intergenic | 50.0% | |
| ! | CCGGGAGAGTTTTTGTTGGA+AGG | + | chr3.2:52160615-52160634 | MS.gene04131:CDS | 50.0% |
| !! | CGTGTGGTTAGTTCTGCTCA+TGG | + | chr3.2:52161315-52161334 | MS.gene04131:CDS | 50.0% |
| !! | GAAGTTCTTGGTGCCTGGAA+AGG | + | chr3.2:52163091-52163110 | MS.gene04131:CDS | 50.0% |
| !! | GCTTTGGAAGACAGGTGAAC+GGG | - | chr3.2:52162684-52162703 | None:intergenic | 50.0% |
| !! | GTGATGGGCTGACTAATGCA+TGG | + | chr3.2:52161552-52161571 | MS.gene04131:intron | 50.0% |
| AAAACTCTCCCGGCTTTCCC+AGG | - | chr3.2:52160608-52160627 | None:intergenic | 55.0% | |
| AAGCCCTAGGGTCTCTTGGT+AGG | + | chr3.2:52162576-52162595 | MS.gene04131:CDS | 55.0% | |
| CACCGCTGTCCTGAATACAC+AGG | - | chr3.2:52162185-52162204 | None:intergenic | 55.0% | |
| CTGTGTATTCAGGACAGCGG+TGG | + | chr3.2:52162183-52162202 | MS.gene04131:intron | 55.0% | |
| GAACCTTGCTCCATATGGGG+AGG | + | chr3.2:52162521-52162540 | MS.gene04131:CDS | 55.0% | |
| GCAAAAGCCCTAGGGTCTCT+TGG | + | chr3.2:52162572-52162591 | MS.gene04131:CDS | 55.0% | |
| GCATCCTACCAAGAGACCCT+AGG | - | chr3.2:52162583-52162602 | None:intergenic | 55.0% | |
| GTCAACAACCTGGGAAAGCC+GGG | + | chr3.2:52160597-52160616 | MS.gene04131:CDS | 55.0% | |
| TCACCTCCCCATATGGAGCA+AGG | - | chr3.2:52162527-52162546 | None:intergenic | 55.0% | |
| TGCTCCATATGGGGAGGTGA+AGG | + | chr3.2:52162527-52162546 | MS.gene04131:CDS | 55.0% | |
| TTCAGGACAGCGGTGGATGA+TGG | + | chr3.2:52162190-52162209 | MS.gene04131:intron | 55.0% | |
| ! | TGAGATCCCTGTCCGCGTTT+TGG | - | chr3.2:52163054-52163073 | None:intergenic | 55.0% |
| !! | TTGGGGAAGTTCTTGGTGCC+TGG | + | chr3.2:52163086-52163105 | MS.gene04131:CDS | 55.0% |
| GCTAGCGCTTCTGCATGCAG+CGG | + | chr3.2:52162835-52162854 | MS.gene04131:CDS | 60.0% | |
| ! | GATCCCTGTCCGCGTTTTGG+AGG | - | chr3.2:52163051-52163070 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 52160566 | 52163120 | 52160566 | ID=MS.gene04131 |
| chr3.2 | mRNA | 52160566 | 52163120 | 52160566 | ID=MS.gene04131.t1;Parent=MS.gene04131 |
| chr3.2 | exon | 52160566 | 52160636 | 52160566 | ID=MS.gene04131.t1.exon1;Parent=MS.gene04131.t1 |
| chr3.2 | CDS | 52160566 | 52160636 | 52160566 | ID=cds.MS.gene04131.t1;Parent=MS.gene04131.t1 |
| chr3.2 | exon | 52161215 | 52161363 | 52161215 | ID=MS.gene04131.t1.exon2;Parent=MS.gene04131.t1 |
| chr3.2 | CDS | 52161215 | 52161363 | 52161215 | ID=cds.MS.gene04131.t1;Parent=MS.gene04131.t1 |
| chr3.2 | exon | 52161747 | 52161865 | 52161747 | ID=MS.gene04131.t1.exon3;Parent=MS.gene04131.t1 |
| chr3.2 | CDS | 52161747 | 52161865 | 52161747 | ID=cds.MS.gene04131.t1;Parent=MS.gene04131.t1 |
| chr3.2 | exon | 52162515 | 52163120 | 52162515 | ID=MS.gene04131.t1.exon4;Parent=MS.gene04131.t1 |
| chr3.2 | CDS | 52162515 | 52163120 | 52162515 | ID=cds.MS.gene04131.t1;Parent=MS.gene04131.t1 |
| Gene Sequence |
| Protein sequence |
