AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041725

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041725.t1 MTR_1g096240 93.913 460 23 2 1 458 1 457 0.0 783
MS.gene041725.t1 MTR_1g111140 62.309 459 147 5 13 458 25 470 0.0 528
MS.gene041725.t1 MTR_8g018770 36.508 441 242 10 40 456 115 541 5.63e-70 231
MS.gene041725.t1 MTR_1g091037 30.995 442 257 9 44 458 213 633 3.59e-49 177
MS.gene041725.t1 MTR_1g091037 48.750 80 38 2 44 121 87 165 1.79e-13 73.2
MS.gene041725.t1 MTR_1g091037 30.995 442 257 9 44 458 205 625 4.51e-49 177
MS.gene041725.t1 MTR_1g091037 48.750 80 38 2 44 121 79 157 1.97e-13 72.8
MS.gene041725.t1 MTR_4g120220 25.959 443 279 9 51 458 89 517 2.22e-33 132
MS.gene041725.t1 MTR_2g006820 24.880 418 259 8 41 456 85 449 7.88e-32 127
MS.gene041725.t1 MTR_5g093300 24.524 420 257 9 41 456 88 451 2.64e-31 125
MS.gene041725.t1 MTR_1g096250 77.941 68 12 1 183 250 14 78 2.75e-24 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041725.t1 AT1G34430 75.699 465 106 2 1 458 1 465 0.0 650
MS.gene041725.t1 AT3G25860 63.956 455 142 5 20 458 32 480 0.0 520
MS.gene041725.t1 AT1G54220 36.806 432 252 13 40 456 112 537 6.78e-66 221
MS.gene041725.t1 AT1G54220 36.806 432 252 13 40 456 112 537 6.78e-66 221
MS.gene041725.t1 AT3G13930 36.952 433 250 11 40 456 112 537 1.25e-64 218
MS.gene041725.t1 AT3G52200 32.444 450 240 13 44 458 217 637 7.60e-49 177
MS.gene041725.t1 AT3G52200 46.250 80 40 2 44 121 90 168 2.90e-13 72.4
MS.gene041725.t1 AT3G52200 32.589 448 238 13 44 456 293 711 1.57e-48 177
MS.gene041725.t1 AT3G52200 39.450 109 60 4 18 121 137 244 1.50e-13 73.6
MS.gene041725.t1 AT3G06850 26.526 426 259 8 51 456 87 478 4.45e-34 134
MS.gene041725.t1 AT3G06850 26.526 426 259 8 51 456 87 478 4.45e-34 134
MS.gene041725.t1 AT4G26910 25.598 418 258 11 41 456 93 459 9.77e-28 115
MS.gene041725.t1 AT4G26910 25.598 418 258 11 41 456 94 460 9.87e-28 115
MS.gene041725.t1 AT4G26910 25.485 412 254 11 47 456 1 361 4.39e-27 112
MS.gene041725.t1 AT5G55070 31.892 185 119 4 274 456 281 460 1.71e-19 91.3
MS.gene041725.t1 AT5G55070 31.892 185 119 4 274 456 281 460 1.71e-19 91.3

Find 149 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGTGAAGACTGCGGTTTC+TGG 0.157662 1.1:+69312348 MS.gene041725:CDS
CAGGTGTTGGTGCGGGTGCG+GGG 0.215967 1.1:-69312101 None:intergenic
TAGGAATATGGTGGAGAGTT+TGG 0.228931 1.1:+69312422 MS.gene041725:CDS
GTGGAGTTGGGACAAATTAT+TGG 0.234111 1.1:+69312243 MS.gene041725:CDS
AGGAATATGGTGGAGAGTTT+GGG 0.248856 1.1:+69312423 MS.gene041725:CDS
GACATCCATGTCAGCTTTAT+CGG 0.262634 1.1:-69311905 None:intergenic
ACAGGTGTTGGTGCGGGTGC+GGG 0.287075 1.1:-69312102 None:intergenic
TCCCTCCGACGCCGGATGTT+TGG 0.299241 1.1:-69312166 None:intergenic
GACTAGAAAGTAAGATCTTT+AGG 0.307512 1.1:-69315499 None:intergenic
AGGTGTTGGTGCGGGTGCGG+GGG 0.313851 1.1:-69312100 None:intergenic
CTACAACTAGAGTTTATAAC+AGG 0.327423 1.1:-69313163 None:intergenic
GCGGTTTCTGGTGTTGAATT+GGG 0.333108 1.1:+69312360 MS.gene041725:CDS
ACTTATTACACCGGTGCTTC+AGG 0.337206 1.1:+69313252 MS.gene041725:CDS
CATGAAGATTTCGCGGATCT+TGG 0.343502 1.1:-69311782 None:intergenic
TGCGGTTTCTGGTGTTGAAT+TGG 0.350193 1.1:+69312359 MS.gene041725:CDS
ATCACCCTATGCGAAGAAAT+TGG 0.352194 1.1:+69312206 MS.gene041725:CDS
TACAGGTGTTGGTGCGGGTG+CGG 0.353694 1.1:-69312103 None:intergenic
AGGAAGAGAGGAACGGTGTT+TGG 0.355488 1.1:-69311687 None:intergenic
GGGAGGTGCGGTTGCGGCGG+AGG 0.360419 1.1:-69311717 None:intergenic
AGGGAGTGTTGCGGCGGCGG+TGG 0.372279 1.1:+69312320 MS.gene041725:CDS
GAGTGTTGCGGCGGCGGTGG+CGG 0.397174 1.1:+69312323 MS.gene041725:CDS
TGGAGTTGGGACAAATTATT+GGG 0.398298 1.1:+69312244 MS.gene041725:CDS
ACTAGAAAGTAAGATCTTTA+GGG 0.398498 1.1:-69315498 None:intergenic
CTGTTATAAACTCTAGTTGT+AGG 0.410006 1.1:+69313164 MS.gene041725:CDS
CTTTCCAACCTGGGAATGTT+CGG 0.410943 1.1:+69315074 MS.gene041725:CDS
ATTATTGGGACTGGACCTTC+CGG 0.412095 1.1:+69312258 MS.gene041725:CDS
GCCGCTGCAACAACCTTCTT+CGG 0.416181 1.1:-69312135 None:intergenic
TGCGGCGGCGGTGGCGGAGC+CGG 0.416867 1.1:+69312329 MS.gene041725:CDS
CTCTTCCCTCCCTCCGACGC+CGG 0.418170 1.1:-69312174 None:intergenic
CAGCGCGAGAGCAGTAGCCT+TGG 0.419733 1.1:-69313131 None:intergenic
AGGCTGCAGCTGCTTAGCTC+TGG 0.423811 1.1:-69313423 None:intergenic
GGCTGTTGTTTCCAAACATC+CGG 0.425730 1.1:+69312155 MS.gene041725:CDS
ATAAGATTACTCACGGTTCC+AGG 0.429298 1.1:-69315125 None:intergenic
GTTGAGGCATTTGCAGCTAC+AGG 0.429723 1.1:+69312300 MS.gene041725:CDS
GGTTGAAGTGGTGCGGTAAA+GGG 0.433200 1.1:-69311737 None:intergenic
GAAGGAATTGAAGGTGGAGT+TGG 0.435661 1.1:+69312230 MS.gene041725:CDS
GGTGTTGGTGCGGGTGCGGG+GGG 0.437355 1.1:-69312099 None:intergenic
TGGTTGAAGTGGTGCGGTAA+AGG 0.437638 1.1:-69311738 None:intergenic
ATCTTTCGCCACAACCCTTC+CGG 0.440346 1.1:-69312277 None:intergenic
TACAGGGAGTGTTGCGGCGG+CGG 0.444220 1.1:+69312317 MS.gene041725:CDS
GAATGCTGTGAGTAGGAATA+TGG 0.448089 1.1:+69312410 MS.gene041725:CDS
AACAACGACACTATCGCCTT+TGG 0.455584 1.1:-69311875 None:intergenic
GTGGAAGGAGTTGGTTGATA+AGG 0.457344 1.1:+69313400 MS.gene041725:CDS
GGTGCGGTTGCGGCGGAGGA+CGG 0.457710 1.1:-69311713 None:intergenic
TGGACCTTCCGGAAGGGTTG+TGG 0.463154 1.1:+69312269 MS.gene041725:CDS
GCCGCTATTGTTGTTGAAGA+AGG 0.464692 1.1:+69311952 MS.gene041725:CDS
GCATTCTGCATTGTCGTAAA+CGG 0.467916 1.1:-69312393 None:intergenic
TTCGCCAATTTCTTCGCATA+GGG 0.468048 1.1:-69312210 None:intergenic
CAAGGCTACTGCTCTCGCGC+TGG 0.468408 1.1:+69313132 MS.gene041725:CDS
GTTGCGGCGGAGGACGGTGG+AGG 0.472614 1.1:-69311707 None:intergenic
AAGGAATTGAAGGTGGAGTT+GGG 0.480219 1.1:+69312231 MS.gene041725:CDS
GCCAACTGTTGTGGCTACTA+AGG 0.480368 1.1:+69315241 MS.gene041725:CDS
CTGAGGGTAAAATTGTCTCT+TGG 0.482085 1.1:+69311827 MS.gene041725:CDS
GGTGCTTCAGGATGCTGATA+AGG 0.482446 1.1:+69313264 MS.gene041725:CDS
CGGTTTCTGGTGTTGAATTG+GGG 0.486100 1.1:+69312361 MS.gene041725:CDS
GTATACCCAACTCTAAAAGT+AGG 0.486215 1.1:-69312450 None:intergenic
GGTTGAGATTCTACAGGTGT+TGG 0.492034 1.1:-69312114 None:intergenic
GGTAAAGGGAGGTGCGGTTG+CGG 0.495558 1.1:-69311723 None:intergenic
GCAGTCGCTGTGGCTATAGA+TGG 0.499476 1.1:+69313226 MS.gene041725:CDS
TCTATTCATTGTCTAGAAAG+TGG 0.500185 1.1:+69313381 MS.gene041725:CDS
TTTGATGCTATTCTGCCTCC+TGG 0.504002 1.1:+69315107 MS.gene041725:CDS
TTGGGACAAATTATTGGGAC+TGG 0.506592 1.1:+69312249 MS.gene041725:CDS
CTTCGCCAATTTCTTCGCAT+AGG 0.507995 1.1:-69312211 None:intergenic
GATCAACGCCGAACATTCCC+AGG 0.510652 1.1:-69315082 None:intergenic
GGAATATGGTGGAGAGTTTG+GGG 0.518956 1.1:+69312424 MS.gene041725:CDS
TACTTTCACTCTTTCCAACC+TGG 0.519342 1.1:+69315064 MS.gene041725:CDS
TGTAGAATCTCAACCGAAGA+AGG 0.522905 1.1:+69312122 MS.gene041725:CDS
AAACATCCGGCGTCGGAGGG+AGG 0.528369 1.1:+69312168 MS.gene041725:CDS
GCGGTTGCGGCGGAGGACGG+TGG 0.528877 1.1:-69311710 None:intergenic
AAATATCAGATCAAGTCAAA+AGG 0.529005 1.1:+69313085 MS.gene041725:intron
TTCTTCGGTTGAGATTCTAC+AGG 0.532090 1.1:-69312120 None:intergenic
AACATCCGGCGTCGGAGGGA+GGG 0.533225 1.1:+69312169 MS.gene041725:CDS
TTCCAAACATCCGGCGTCGG+AGG 0.533552 1.1:+69312164 MS.gene041725:CDS
GAAGGTGATGTCGCCGCTGT+TGG 0.535492 1.1:+69311970 MS.gene041725:CDS
GCGGACGACGAAGTGGTTTG+TGG 0.535513 1.1:-69311758 None:intergenic
GAAATTGGCGAAGGAATTGA+AGG 0.536019 1.1:+69312221 MS.gene041725:CDS
GTCTAGAAAGTGGAAGGAGT+TGG 0.536472 1.1:+69313391 MS.gene041725:CDS
GTCTCTTGGATCAAATCAGA+AGG 0.538266 1.1:+69311841 MS.gene041725:CDS
GATTCTACAGGTGTTGGTGC+GGG 0.539762 1.1:-69312108 None:intergenic
AAAGGGAGGTGCGGTTGCGG+CGG 0.543956 1.1:-69311720 None:intergenic
TCCAAACATCCGGCGTCGGA+GGG 0.544296 1.1:+69312165 MS.gene041725:CDS
CCAGAAACCGCAGTCTTCAC+CGG 0.546950 1.1:-69312348 None:intergenic
TCCTTAGTAGCCACAACAGT+TGG 0.552942 1.1:-69315242 None:intergenic
GGAGGACGGTGGAGGAAGAG+AGG 0.554510 1.1:-69311699 None:intergenic
TGTTATAAACTCTAGTTGTA+GGG 0.556097 1.1:+69313165 MS.gene041725:CDS
TATACCCAACTCTAAAAGTA+GGG 0.558796 1.1:-69312449 None:intergenic
GTCATTGTAGAACTGAGTGC+TGG 0.559015 1.1:-69311805 None:intergenic
AACTCTGTCTCAGATTATTG+AGG 0.559596 1.1:+69315474 MS.gene041725:CDS
GTGCTGGCATGAAGATTTCG+CGG 0.563480 1.1:-69311789 None:intergenic
ACTTTCACTCTTTCCAACCT+GGG 0.563865 1.1:+69315065 MS.gene041725:CDS
GCTACTAAGGATGGTCGCAT+TGG 0.565084 1.1:+69315254 MS.gene041725:CDS
AGTTTCAGCGAGAAATGCGA+TGG 0.567042 1.1:-69311998 None:intergenic
ATTTCTCGCTGAAACTGAAG+AGG 0.570927 1.1:+69312005 MS.gene041725:CDS
TTATCAGCATCCTGAAGCAC+CGG 0.577664 1.1:-69313262 None:intergenic
ATAAACTCTAGTTGTAGGGA+TGG 0.580204 1.1:+69313169 MS.gene041725:CDS
TGTTTCCAAACATCCGGCGT+CGG 0.581572 1.1:+69312161 MS.gene041725:CDS
AACGCCGAACATTCCCAGGT+TGG 0.582154 1.1:-69315078 None:intergenic
TTCATTGTCTAGAAAGTGGA+AGG 0.582367 1.1:+69313385 MS.gene041725:CDS
GCAGATCACCGTGTAATCTA+CGG 0.582939 1.1:+69315427 MS.gene041725:CDS
GAAGTGGTTTGTGGTTGAAG+TGG 0.588895 1.1:-69311749 None:intergenic
ACTGTTGTGGCTACTAAGGA+TGG 0.592061 1.1:+69315245 MS.gene041725:CDS
TTGGGACTGGACCTTCCGGA+AGG 0.593798 1.1:+69312262 MS.gene041725:CDS
TGCAGCTACAGGGAGTGTTG+CGG 0.595016 1.1:+69312311 MS.gene041725:CDS
AGATTCTACAGGTGTTGGTG+CGG 0.596519 1.1:-69312109 None:intergenic
ACCGAAGAAGGTTGTTGCAG+CGG 0.599613 1.1:+69312134 MS.gene041725:CDS
TGGGACTGGACCTTCCGGAA+GGG 0.600384 1.1:+69312263 MS.gene041725:CDS
GAGAGCATCAAGTGCATCAG+TGG 0.600462 1.1:-69312478 None:intergenic
TTGAGGCATTTGCAGCTACA+GGG 0.601587 1.1:+69312301 MS.gene041725:CDS
TGGCATGAAGAATCAAATGC+AGG 0.601842 1.1:+69315274 MS.gene041725:CDS
AACATCACAGCCAACTGTTG+TGG 0.603272 1.1:+69315232 MS.gene041725:CDS
GTACCTGTGGTGTATTCATG+AGG 0.605362 1.1:-69313443 None:intergenic
TGGTGTTGAATTGGGGACTG+TGG 0.606170 1.1:+69312368 MS.gene041725:CDS
TGCTGTGAGTAGGAATATGG+TGG 0.607504 1.1:+69312413 MS.gene041725:CDS
ATTGGCGAAGGAATTGAAGG+TGG 0.607948 1.1:+69312224 MS.gene041725:CDS
GATCAGAACCGTAGATTACA+CGG 0.607965 1.1:-69315435 None:intergenic
AGCTACAGGGAGTGTTGCGG+CGG 0.608056 1.1:+69312314 MS.gene041725:CDS
TATGACAGCATTGCTTGCCA+AGG 0.608654 1.1:+69313114 MS.gene041725:CDS
CAATGCAGAATGCTGTGAGT+AGG 0.608840 1.1:+69312403 MS.gene041725:CDS
TCTCTTGGATCAAATCAGAA+GGG 0.609630 1.1:+69311842 MS.gene041725:CDS
TTCGCCACAACCCTTCCGGA+AGG 0.615833 1.1:-69312273 None:intergenic
GGAGGGAGGGAAGAGAGTGG+TGG 0.617615 1.1:+69312182 MS.gene041725:CDS
TGGTGCGGTAAAGGGAGGTG+CGG 0.619698 1.1:-69311729 None:intergenic
GTCGCTGTGGCTATAGATGG+TGG 0.623776 1.1:+69313229 MS.gene041725:CDS
TCTTGGCGCGGACGACGAAG+TGG 0.624233 1.1:-69311765 None:intergenic
ACTTGATGCTCTCTACAAGA+AGG 0.626411 1.1:+69312488 MS.gene041725:CDS
TGAATCCGATAAAGCTGACA+TGG 0.626546 1.1:+69311900 MS.gene041725:CDS
CTCTTGGATCAAATCAGAAG+GGG 0.630932 1.1:+69311843 MS.gene041725:CDS
CATCAACATTGCAGTCGCTG+TGG 0.633131 1.1:+69313216 MS.gene041725:CDS
CTCAGTTCTACAATGACTGA+GGG 0.633936 1.1:+69311811 MS.gene041725:CDS
GAAGGGGACAAACTCTCCAA+AGG 0.641779 1.1:+69311859 MS.gene041725:CDS
GGCGGAGCCGGTGAAGACTG+CGG 0.642471 1.1:+69312341 MS.gene041725:CDS
GGTTGTGGCGAAAGATGTTG+AGG 0.643297 1.1:+69312284 MS.gene041725:CDS
GTTTCAGCGAGAAATGCGAT+GGG 0.651735 1.1:-69311997 None:intergenic
CTATGCGAAGAAATTGGCGA+AGG 0.655491 1.1:+69312212 MS.gene041725:CDS
GGTTTGTGGTTGAAGTGGTG+CGG 0.655720 1.1:-69311744 None:intergenic
AGATTTCGCGGATCTTGGCG+CGG 0.656239 1.1:-69311777 None:intergenic
CAGCCTCATGAATACACCAC+AGG 0.661316 1.1:+69313440 MS.gene041725:CDS
ACCTTCTTCAACAACAATAG+CGG 0.666193 1.1:-69311953 None:intergenic
GTCGGAGGGAGGGAAGAGAG+TGG 0.667080 1.1:+69312179 MS.gene041725:CDS
AGATGGTGGACTTATTACAC+CGG 0.677164 1.1:+69313243 MS.gene041725:CDS
ACTCAGTTCTACAATGACTG+AGG 0.680370 1.1:+69311810 MS.gene041725:CDS
TGAAGTGGTGCGGTAAAGGG+AGG 0.698500 1.1:-69311734 None:intergenic
GAATATGGTGGAGAGTTTGG+GGG 0.700419 1.1:+69312425 MS.gene041725:CDS
AGATTACTCACGGTTCCAGG+AGG 0.719011 1.1:-69315122 None:intergenic
GATGTCGAAACTTTCTACGA+CGG 0.722494 1.1:+69311922 MS.gene041725:CDS
CTTCAACAACAATAGCGGCG+AGG 0.722816 1.1:-69311948 None:intergenic
ACGGTGGAGGAAGAGAGGAA+CGG 0.731025 1.1:-69311694 None:intergenic
TACAACTAGAGTTTATAACA+GGG 0.744003 1.1:-69313162 None:intergenic
TGCGATGGGAGATCCAACAG+CGG 0.746283 1.1:-69311983 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATAGTCTATAAAAAA+AGG - chr1.1:69314651-69314670 None:intergenic 10.0%
!! ATTTATAGTCTATAAAAAAA+GGG - chr1.1:69314650-69314669 None:intergenic 10.0%
!! AAAAAATTAAAAAAATGGCT+TGG + chr1.1:69313614-69313633 MS.gene041725:intron 15.0%
!! ACAGTAATTATCTATTTATT+AGG + chr1.1:69313464-69313483 MS.gene041725:intron 15.0%
!! CAATAAAATCATTTAACATA+AGG + chr1.1:69314326-69314345 MS.gene041725:intron 15.0%
!! TGTCCAAAAAATTAAAAAAA+TGG + chr1.1:69313609-69313628 MS.gene041725:intron 15.0%
!! TTATTGTTTATGAAATTGTA+AGG - chr1.1:69314227-69314246 None:intergenic 15.0%
!! TTTATAGTCTATAAAAAAAG+GGG - chr1.1:69314649-69314668 None:intergenic 15.0%
!!! AAATGATTTTATTGAAACTT+TGG - chr1.1:69314320-69314339 None:intergenic 15.0%
!!! AAGCCATTTTTTTAATTTTT+TGG - chr1.1:69313615-69313634 None:intergenic 15.0%
!!! ATATTAACAAATCTAGTTTA+AGG - chr1.1:69314059-69314078 None:intergenic 15.0%
!!! TTGGTCAAATATTTAATTTA+AGG + chr1.1:69314522-69314541 MS.gene041725:intron 15.0%
!! AAGTTATGTATTTAATGCAT+TGG - chr1.1:69314877-69314896 None:intergenic 20.0%
!! ATTCAACTGTAAAAACATTA+TGG - chr1.1:69314962-69314981 None:intergenic 20.0%
!! GCTTATAATCTAACATAAAA+TGG + chr1.1:69313310-69313329 MS.gene041725:intron 20.0%
!! GTTTATTTGACGTATATTAT+AGG + chr1.1:69313352-69313371 MS.gene041725:intron 20.0%
!! TAAAGAATAATTTCCTAATC+TGG - chr1.1:69314832-69314851 None:intergenic 20.0%
!! TTATAGTCTATAAAAAAAGG+GGG - chr1.1:69314648-69314667 None:intergenic 20.0%
!! TTCAACTGTAAAAACATTAT+GGG - chr1.1:69314961-69314980 None:intergenic 20.0%
!! TTTATTAAAAATCCCAACAA+TGG - chr1.1:69312626-69312645 None:intergenic 20.0%
!!! GAGTATGACTTATTTATTTT+TGG + chr1.1:69315326-69315345 MS.gene041725:intron 20.0%
!!! TCAAATAAACCTTTTTAACA+GGG - chr1.1:69313342-69313361 None:intergenic 20.0%
!!! TGTTGGGATTTTTAATAAAT+GGG + chr1.1:69312627-69312646 MS.gene041725:intron 20.0%
!!! TTGAATTTTGACATTCAATT+GGG + chr1.1:69314976-69314995 MS.gene041725:intron 20.0%
!!! TTGTTGGGATTTTTAATAAA+TGG + chr1.1:69312626-69312645 MS.gene041725:intron 20.0%
! AAAATCCTTGAAGAAAAGTT+TGG + chr1.1:69313781-69313800 MS.gene041725:intron 25.0%
! AAACTAAAAATGGTAACAGA+GGG - chr1.1:69314379-69314398 None:intergenic 25.0%
! AAATATCAGATCAAGTCAAA+AGG + chr1.1:69313085-69313104 MS.gene041725:intron 25.0%
! AGAACAAGCTATATAATGTT+TGG + chr1.1:69314765-69314784 MS.gene041725:intron 25.0%
! ATCACAAATAAGATTACTCA+CGG - chr1.1:69315135-69315154 None:intergenic 25.0%
! ATGAACTTTCCAATTTATCA+TGG + chr1.1:69313502-69313521 MS.gene041725:intron 25.0%
! ATTACATAATTCACCATTGT+TGG + chr1.1:69312610-69312629 MS.gene041725:intron 25.0%
! CAAAGCATGAAATTAATGAT+TGG + chr1.1:69314096-69314115 MS.gene041725:intron 25.0%
! GAACAAGCTATATAATGTTT+GGG + chr1.1:69314766-69314785 MS.gene041725:intron 25.0%
! TACAACTAGAGTTTATAACA+GGG - chr1.1:69313165-69313184 None:intergenic 25.0%
! TATAGTCTATAAAAAAAGGG+GGG - chr1.1:69314647-69314666 None:intergenic 25.0%
! TATGTGTAAGTGTTATATAC+AGG - chr1.1:69314461-69314480 None:intergenic 25.0%
! TCATGATATGTGTATAGAAT+TGG + chr1.1:69313668-69313687 MS.gene041725:intron 25.0%
! TGTTATAAACTCTAGTTGTA+GGG + chr1.1:69313165-69313184 MS.gene041725:CDS 25.0%
! TTAAGGATTCCATGATAAAT+TGG - chr1.1:69313514-69313533 None:intergenic 25.0%
! TTACATAATTCACCATTGTT+GGG + chr1.1:69312611-69312630 MS.gene041725:intron 25.0%
! TTATAGAACACGAATGATTA+GGG + chr1.1:69312664-69312683 MS.gene041725:intron 25.0%
! TTGTTTATTCTAGATTACCA+TGG - chr1.1:69314720-69314739 None:intergenic 25.0%
! TTTATAGAACACGAATGATT+AGG + chr1.1:69312663-69312682 MS.gene041725:intron 25.0%
! TTTGCATCTTAATATTTCCA+GGG + chr1.1:69314600-69314619 MS.gene041725:intron 25.0%
!! AGCATTTTCCAAACTAAAAA+TGG - chr1.1:69314389-69314408 None:intergenic 25.0%
!! GTCAAATAAACCTTTTTAAC+AGG - chr1.1:69313343-69313362 None:intergenic 25.0%
!! TTCTGTTCTTTTATAACTGA+AGG + chr1.1:69315377-69315396 MS.gene041725:intron 25.0%
!! TTTTGCATCTTAATATTTCC+AGG + chr1.1:69314599-69314618 MS.gene041725:intron 25.0%
!!! CATTATATAGCTTGTTCTTT+TGG - chr1.1:69314763-69314782 None:intergenic 25.0%
!!! GTTGAATTTTGACATTCAAT+TGG + chr1.1:69314975-69314994 MS.gene041725:intron 25.0%
!!! TACTTGGTTTTATTCTTCTT+GGG + chr1.1:69313712-69313731 MS.gene041725:intron 25.0%
!!! TTTGTGGGTTTATTTTTGTA+GGG + chr1.1:69315191-69315210 MS.gene041725:intron 25.0%
!!! TTTTGTGGGTTTATTTTTGT+AGG + chr1.1:69315190-69315209 MS.gene041725:intron 25.0%
AAATCCTTCACAACAAATAG+CGG + chr1.1:69314564-69314583 MS.gene041725:intron 30.0%
AACATGAGTCTACAAGTTTA+AGG - chr1.1:69313022-69313041 None:intergenic 30.0%
AACATGCAATCAATCATACA+TGG - chr1.1:69312917-69312936 None:intergenic 30.0%
AACCTCAAAATATACAGCTA+AGG - chr1.1:69313946-69313965 None:intergenic 30.0%
AACTAAAAATGGTAACAGAG+GGG - chr1.1:69314378-69314397 None:intergenic 30.0%
AAGGTTTGGAAGAATAAATC+TGG + chr1.1:69313991-69314010 MS.gene041725:intron 30.0%
AATATTTCCAGGGAAGTTTA+TGG + chr1.1:69314610-69314629 MS.gene041725:intron 30.0%
AATCCTTAAATTTGTGGGTA+GGG + chr1.1:69313525-69313544 MS.gene041725:intron 30.0%
ACAAATAAAGCGAATATACG+AGG - chr1.1:69314692-69314711 None:intergenic 30.0%
AGGTTTGGAAGAATAAATCT+GGG + chr1.1:69313992-69314011 MS.gene041725:intron 30.0%
ATAGATAATTACTGTACCTG+TGG - chr1.1:69313459-69313478 None:intergenic 30.0%
ATATTTGACCAATCAAGTTC+TGG - chr1.1:69314514-69314533 None:intergenic 30.0%
CAAACTAAAAATGGTAACAG+AGG - chr1.1:69314380-69314399 None:intergenic 30.0%
CAAGAAGAATAAAACCAAGT+AGG - chr1.1:69313713-69313732 None:intergenic 30.0%
CATGGAATCCTTAAATTTGT+GGG + chr1.1:69313520-69313539 MS.gene041725:intron 30.0%
CTACAACTAGAGTTTATAAC+AGG - chr1.1:69313166-69313185 None:intergenic 30.0%
CTGTTATAAACTCTAGTTGT+AGG + chr1.1:69313164-69313183 MS.gene041725:CDS 30.0%
GTTATAAAAGAACAGAAGTC+TGG - chr1.1:69315374-69315393 None:intergenic 30.0%
GTTCAGACATTTGTATATGT+TGG + chr1.1:69315304-69315323 MS.gene041725:intron 30.0%
TACATCAACTAACTTTCTAG+AGG + chr1.1:69313907-69313926 MS.gene041725:intron 30.0%
TATAGAACACGAATGATTAG+GGG + chr1.1:69312665-69312684 MS.gene041725:intron 30.0%
TCATGGAATCCTTAAATTTG+TGG + chr1.1:69313519-69313538 MS.gene041725:intron 30.0%
TCTATTCATTGTCTAGAAAG+TGG + chr1.1:69313381-69313400 MS.gene041725:CDS 30.0%
TGCTAAGCTATTTAATACGA+GGG + chr1.1:69313855-69313874 MS.gene041725:intron 30.0%
TTGTTAATATTGCGAGAACA+GGG + chr1.1:69314069-69314088 MS.gene041725:intron 30.0%
TTTGTTAATATTGCGAGAAC+AGG + chr1.1:69314068-69314087 MS.gene041725:intron 30.0%
! TATACCCAACTCTAAAAGTA+GGG - chr1.1:69312452-69312471 None:intergenic 30.0%
! TTCCTTAGCTGTATATTTTG+AGG + chr1.1:69313941-69313960 MS.gene041725:intron 30.0%
!! ACGTGAATTTGATTGTTTTG+TGG + chr1.1:69315175-69315194 MS.gene041725:intron 30.0%
!! CGTGAATTTGATTGTTTTGT+GGG + chr1.1:69315176-69315195 MS.gene041725:intron 30.0%
!! TTGAAGAGTGCTTTAAGTTA+AGG + chr1.1:69313972-69313991 MS.gene041725:intron 30.0%
!!! CTACTTGGTTTTATTCTTCT+TGG + chr1.1:69313711-69313730 MS.gene041725:intron 30.0%
!!! CTCTGTTACCATTTTTAGTT+TGG + chr1.1:69314378-69314397 MS.gene041725:intron 30.0%
!!! TTGTGGGTTTATTTTTGTAG+GGG + chr1.1:69315192-69315211 MS.gene041725:intron 30.0%
AACTCTGTCTCAGATTATTG+AGG + chr1.1:69315474-69315493 MS.gene041725:CDS 35.0%
AATAGTACCATAAACTTCCC+TGG - chr1.1:69314620-69314639 None:intergenic 35.0%
ACATTCAACAGTATTGTCTG+TGG + chr1.1:69314168-69314187 MS.gene041725:intron 35.0%
ACCTTCTTCAACAACAATAG+CGG - chr1.1:69311956-69311975 None:intergenic 35.0%
ACTAAAAATGGTAACAGAGG+GGG - chr1.1:69314377-69314396 None:intergenic 35.0%
AGAAACACAAGAATCCTACA+TGG + chr1.1:69314432-69314451 MS.gene041725:intron 35.0%
ATAAACTCTAGTTGTAGGGA+TGG + chr1.1:69313169-69313188 MS.gene041725:CDS 35.0%
ATACGAGGTAGAATTGTACT+AGG - chr1.1:69314677-69314696 None:intergenic 35.0%
CTCTTTAAGCATACCAGATT+AGG + chr1.1:69314816-69314835 MS.gene041725:intron 35.0%
CTGAAGAGATAACTTGAAGT+CGG + chr1.1:69314128-69314147 MS.gene041725:intron 35.0%
GAATCCTTAAATTTGTGGGT+AGG + chr1.1:69313524-69313543 MS.gene041725:intron 35.0%
GCTAAGCTATTTAATACGAG+GGG + chr1.1:69313856-69313875 MS.gene041725:intron 35.0%
GTGCTAAGCTATTTAATACG+AGG + chr1.1:69313854-69313873 MS.gene041725:intron 35.0%
TAGCTAGATGACTATCACAT+TGG + chr1.1:69312565-69312584 MS.gene041725:intron 35.0%
TATCTTACCCCACTTTAGTT+AGG + chr1.1:69314265-69314284 MS.gene041725:intron 35.0%
TCTCTTGGATCAAATCAGAA+GGG + chr1.1:69311842-69311861 MS.gene041725:CDS 35.0%
TGAAGAGATAACTTGAAGTC+GGG + chr1.1:69314129-69314148 MS.gene041725:intron 35.0%
TGGAGTTGGGACAAATTATT+GGG + chr1.1:69312244-69312263 MS.gene041725:CDS 35.0%
TGTGATCTAATCGAAAGTGA+TGG + chr1.1:69315149-69315168 MS.gene041725:intron 35.0%
TTCATTGTCTAGAAAGTGGA+AGG + chr1.1:69313385-69313404 MS.gene041725:CDS 35.0%
! ATGATTAGGGGAAAAAGTGT+TGG + chr1.1:69312677-69312696 MS.gene041725:intron 35.0%
! ATTGAAACTTTGGTCTTCCA+TGG - chr1.1:69314310-69314329 None:intergenic 35.0%
! ATTTTTGTAGGGGGCAATTA+TGG + chr1.1:69315202-69315221 MS.gene041725:intron 35.0%
! GAGTGCTTTAAGTTAAGGTT+TGG + chr1.1:69313977-69313996 MS.gene041725:intron 35.0%
! GTATACCCAACTCTAAAAGT+AGG - chr1.1:69312453-69312472 None:intergenic 35.0%
! GTTAGCCAAACTTTTCTTCA+AGG - chr1.1:69313789-69313808 None:intergenic 35.0%
!! CAGCAAATTTTAGCAAGTGT+TGG + chr1.1:69312712-69312731 MS.gene041725:intron 35.0%
!! CTGATTTCTGTTGTTTCTCT+AGG + chr1.1:69315041-69315060 MS.gene041725:intron 35.0%
!! GTCATTGATTTCACCATTGT+AGG - chr1.1:69313747-69313766 None:intergenic 35.0%
!! TGACTATCACATTGGTTCTT+TGG + chr1.1:69312573-69312592 MS.gene041725:intron 35.0%
!!! TGTGGGTTTATTTTTGTAGG+GGG + chr1.1:69315193-69315212 MS.gene041725:intron 35.0%
AAATTTGTGGGTAGGGACTA+GGG + chr1.1:69313532-69313551 MS.gene041725:intron 40.0%
AAGCTATTTAATACGAGGGG+TGG + chr1.1:69313859-69313878 MS.gene041725:intron 40.0%
AAGGAATTGAAGGTGGAGTT+GGG + chr1.1:69312231-69312250 MS.gene041725:CDS 40.0%
ACAACAGAAATCAGTGAAGC+AGG - chr1.1:69315035-69315054 None:intergenic 40.0%
ACTCAGTTCTACAATGACTG+AGG + chr1.1:69311810-69311829 MS.gene041725:CDS 40.0%
ACTTGATGCTCTCTACAAGA+AGG + chr1.1:69312488-69312507 MS.gene041725:CDS 40.0%
ACTTTCACTCTTTCCAACCT+GGG + chr1.1:69315065-69315084 MS.gene041725:CDS 40.0%
AGTCCCTACCCACAAATTTA+AGG - chr1.1:69313531-69313550 None:intergenic 40.0%
AGTGGGGTAAGATAAGACAT+TGG - chr1.1:69314259-69314278 None:intergenic 40.0%
ATAAGATTACTCACGGTTCC+AGG - chr1.1:69315128-69315147 None:intergenic 40.0%
ATCACCCTATGCGAAGAAAT+TGG + chr1.1:69312206-69312225 MS.gene041725:CDS 40.0%
ATTTCTCGCTGAAACTGAAG+AGG + chr1.1:69312005-69312024 MS.gene041725:CDS 40.0%
CAACAGAAATCAGTGAAGCA+GGG - chr1.1:69315034-69315053 None:intergenic 40.0%
CTAAAAATGGTAACAGAGGG+GGG - chr1.1:69314376-69314395 None:intergenic 40.0%
CTCAGTTCTACAATGACTGA+GGG + chr1.1:69311811-69311830 MS.gene041725:CDS 40.0%
CTCTTGGATCAAATCAGAAG+GGG + chr1.1:69311843-69311862 MS.gene041725:CDS 40.0%
CTGAAGGAATGCAAATTTGC+AGG + chr1.1:69315393-69315412 MS.gene041725:intron 40.0%
CTGAGGGTAAAATTGTCTCT+TGG + chr1.1:69311827-69311846 MS.gene041725:CDS 40.0%
CTGGGTTTGAAAGAATTAGC+AGG + chr1.1:69314010-69314029 MS.gene041725:intron 40.0%
GAAATTGGCGAAGGAATTGA+AGG + chr1.1:69312221-69312240 MS.gene041725:CDS 40.0%
GAATGCTGTGAGTAGGAATA+TGG + chr1.1:69312410-69312429 MS.gene041725:CDS 40.0%
GATCAGAACCGTAGATTACA+CGG - chr1.1:69315438-69315457 None:intergenic 40.0%
GATGTCGAAACTTTCTACGA+CGG + chr1.1:69311922-69311941 MS.gene041725:CDS 40.0%
GCATTCTGCATTGTCGTAAA+CGG - chr1.1:69312396-69312415 None:intergenic 40.0%
GTCTCTTGGATCAAATCAGA+AGG + chr1.1:69311841-69311860 MS.gene041725:CDS 40.0%
GTCTGTGGTCAGTTACAAAT+TGG + chr1.1:69314183-69314202 MS.gene041725:intron 40.0%
GTGGAGTTGGGACAAATTAT+TGG + chr1.1:69312243-69312262 MS.gene041725:CDS 40.0%
TAAATTTGTGGGTAGGGACT+AGG + chr1.1:69313531-69313550 MS.gene041725:intron 40.0%
TACAGCTAAGGAACATCATC+AGG - chr1.1:69313934-69313953 None:intergenic 40.0%
TACTTTCACTCTTTCCAACC+TGG + chr1.1:69315064-69315083 MS.gene041725:CDS 40.0%
TAGACACAACACTAACACGT+TGG + chr1.1:69312748-69312767 MS.gene041725:intron 40.0%
TCCAGTCTACAAAACCTACT+TGG + chr1.1:69313696-69313715 MS.gene041725:intron 40.0%
TGAATCCGATAAAGCTGACA+TGG + chr1.1:69311900-69311919 MS.gene041725:CDS 40.0%
TGGCATGAAGAATCAAATGC+AGG + chr1.1:69315274-69315293 MS.gene041725:CDS 40.0%
TGGTGTTCACCCTGTTAAAA+AGG + chr1.1:69313330-69313349 MS.gene041725:intron 40.0%
TGTAGAATCTCAACCGAAGA+AGG + chr1.1:69312122-69312141 MS.gene041725:CDS 40.0%
TTATATACAGGCAGCCATGT+AGG - chr1.1:69314449-69314468 None:intergenic 40.0%
TTCGCCAATTTCTTCGCATA+GGG - chr1.1:69312213-69312232 None:intergenic 40.0%
TTCTTCGGTTGAGATTCTAC+AGG - chr1.1:69312123-69312142 None:intergenic 40.0%
TTGGGACAAATTATTGGGAC+TGG + chr1.1:69312249-69312268 MS.gene041725:CDS 40.0%
! AGGAATATGGTGGAGAGTTT+GGG + chr1.1:69312423-69312442 MS.gene041725:CDS 40.0%
! GACATCCATGTCAGCTTTAT+CGG - chr1.1:69311908-69311927 None:intergenic 40.0%
! TAGGAATATGGTGGAGAGTT+TGG + chr1.1:69312422-69312441 MS.gene041725:CDS 40.0%
!! ACCAAGTAGGTTTTGTAGAC+TGG - chr1.1:69313700-69313719 None:intergenic 40.0%
!! AGATGGTGGACTTATTACAC+CGG + chr1.1:69313243-69313262 MS.gene041725:CDS 40.0%
!! AGTACCGCTATTTGTTGTGA+AGG - chr1.1:69314571-69314590 None:intergenic 40.0%
!! CGCTTTATTTGTTTCTGCCA+TGG + chr1.1:69314700-69314719 MS.gene041725:intron 40.0%
!! TTAGCAAGTGTTGGCAAACA+CGG + chr1.1:69312721-69312740 MS.gene041725:intron 40.0%
AACAACGACACTATCGCCTT+TGG - chr1.1:69311878-69311897 None:intergenic 45.0%
AACATCACAGCCAACTGTTG+TGG + chr1.1:69315232-69315251 MS.gene041725:CDS 45.0%
AATTAGCAGGAGAGCTCATG+TGG + chr1.1:69314023-69314042 MS.gene041725:intron 45.0%
ACTGTTGTGGCTACTAAGGA+TGG + chr1.1:69315245-69315264 MS.gene041725:CDS 45.0%
ACTTATTACACCGGTGCTTC+AGG + chr1.1:69313252-69313271 MS.gene041725:CDS 45.0%
AGATAACTTGAAGTCGGGTG+CGG + chr1.1:69314134-69314153 MS.gene041725:intron 45.0%
AGTTTCAGCGAGAAATGCGA+TGG - chr1.1:69312001-69312020 None:intergenic 45.0%
ATGGTCAGCCAGAACTTGAT+TGG + chr1.1:69314503-69314522 MS.gene041725:intron 45.0%
ATTATTGGGACTGGACCTTC+CGG + chr1.1:69312258-69312277 MS.gene041725:CDS 45.0%
ATTGGCGAAGGAATTGAAGG+TGG + chr1.1:69312224-69312243 MS.gene041725:CDS 45.0%
CAACACGACAATGACACATG+TGG - chr1.1:69312814-69312833 None:intergenic 45.0%
CAATGCAGAATGCTGTGAGT+AGG + chr1.1:69312403-69312422 MS.gene041725:CDS 45.0%
CATGAAGATTTCGCGGATCT+TGG - chr1.1:69311785-69311804 None:intergenic 45.0%
CTATGCGAAGAAATTGGCGA+AGG + chr1.1:69312212-69312231 MS.gene041725:CDS 45.0%
CTGACCATACACAGAAGAGT+GGG - chr1.1:69314491-69314510 None:intergenic 45.0%
CTTCGCCAATTTCTTCGCAT+AGG - chr1.1:69312214-69312233 None:intergenic 45.0%
CTTTCCAACCTGGGAATGTT+CGG + chr1.1:69315074-69315093 MS.gene041725:CDS 45.0%
GAAGGAATTGAAGGTGGAGT+TGG + chr1.1:69312230-69312249 MS.gene041725:CDS 45.0%
GCAGATCACCGTGTAATCTA+CGG + chr1.1:69315427-69315446 MS.gene041725:CDS 45.0%
GGTTGAGATTCTACAGGTGT+TGG - chr1.1:69312117-69312136 None:intergenic 45.0%
GTACCTGTGGTGTATTCATG+AGG - chr1.1:69313446-69313465 None:intergenic 45.0%
GTCATTGTAGAACTGAGTGC+TGG - chr1.1:69311808-69311827 None:intergenic 45.0%
GTCTAGAAAGTGGAAGGAGT+TGG + chr1.1:69313391-69313410 MS.gene041725:CDS 45.0%
GTTTCAGCGAGAAATGCGAT+GGG - chr1.1:69312000-69312019 None:intergenic 45.0%
TATGACAGCATTGCTTGCCA+AGG + chr1.1:69313114-69313133 MS.gene041725:CDS 45.0%
TCCTTAGTAGCCACAACAGT+TGG - chr1.1:69315245-69315264 None:intergenic 45.0%
TGCTGTGAGTAGGAATATGG+TGG + chr1.1:69312413-69312432 MS.gene041725:CDS 45.0%
TTATCAGCATCCTGAAGCAC+CGG - chr1.1:69313265-69313284 None:intergenic 45.0%
TTTGATGCTATTCTGCCTCC+TGG + chr1.1:69315107-69315126 MS.gene041725:CDS 45.0%
! CACATGTGTCATTGTCGTGT+TGG + chr1.1:69312812-69312831 MS.gene041725:intron 45.0%
! GAAGTGGTTTGTGGTTGAAG+TGG - chr1.1:69311752-69311771 None:intergenic 45.0%
! GAATATGGTGGAGAGTTTGG+GGG + chr1.1:69312425-69312444 MS.gene041725:CDS 45.0%
! GCCGCTATTGTTGTTGAAGA+AGG + chr1.1:69311952-69311971 MS.gene041725:CDS 45.0%
! GGAATATGGTGGAGAGTTTG+GGG + chr1.1:69312424-69312443 MS.gene041725:CDS 45.0%
! GTAGCTGGCCTAACTAAAGT+GGG - chr1.1:69314276-69314295 None:intergenic 45.0%
! GTGGAAGGAGTTGGTTGATA+AGG + chr1.1:69313400-69313419 MS.gene041725:CDS 45.0%
! TAGCTGGCCTAACTAAAGTG+GGG - chr1.1:69314275-69314294 None:intergenic 45.0%
! TGGGCTAGATTCTCCTACAA+TGG + chr1.1:69313731-69313750 MS.gene041725:intron 45.0%
! TGTAGCTGGCCTAACTAAAG+TGG - chr1.1:69314277-69314296 None:intergenic 45.0%
! TGTCATTGTCGTGTTGGTGT+CGG + chr1.1:69312818-69312837 MS.gene041725:intron 45.0%
! TTGAGGCATTTGCAGCTACA+GGG + chr1.1:69312301-69312320 MS.gene041725:CDS 45.0%
! TTGTTGTTGCAACATGCTGC+TGG + chr1.1:69312947-69312966 MS.gene041725:intron 45.0%
!! AGATTCTACAGGTGTTGGTG+CGG - chr1.1:69312112-69312131 None:intergenic 45.0%
!! CGGTTTCTGGTGTTGAATTG+GGG + chr1.1:69312361-69312380 MS.gene041725:CDS 45.0%
!! GCGGTTTCTGGTGTTGAATT+GGG + chr1.1:69312360-69312379 MS.gene041725:CDS 45.0%
!! GGCTGTTGTTTCCAAACATC+CGG + chr1.1:69312155-69312174 MS.gene041725:CDS 45.0%
!! TGCGGTTTCTGGTGTTGAAT+TGG + chr1.1:69312359-69312378 MS.gene041725:CDS 45.0%
!!! GGGTCCCTACTTTTAGAGTT+GGG + chr1.1:69312445-69312464 MS.gene041725:CDS 45.0%
AAATGTTAACGAGTGCCCCC+GGG - chr1.1:69314938-69314957 None:intergenic 50.0%
ACCACCCACTCTTCTGTGTA+TGG + chr1.1:69314484-69314503 MS.gene041725:intron 50.0%
ACCATACACAGAAGAGTGGG+TGG - chr1.1:69314488-69314507 None:intergenic 50.0%
ACCGAAGAAGGTTGTTGCAG+CGG + chr1.1:69312134-69312153 MS.gene041725:CDS 50.0%
AGATTACTCACGGTTCCAGG+AGG - chr1.1:69315125-69315144 None:intergenic 50.0%
AGGAAGAGAGGAACGGTGTT+TGG - chr1.1:69311690-69311709 None:intergenic 50.0%
ATCTTTCGCCACAACCCTTC+CGG - chr1.1:69312280-69312299 None:intergenic 50.0%
CAGCCTCATGAATACACCAC+AGG + chr1.1:69313440-69313459 MS.gene041725:CDS 50.0%
CATCAACATTGCAGTCGCTG+TGG + chr1.1:69313216-69313235 MS.gene041725:CDS 50.0%
CTTCAACAACAATAGCGGCG+AGG - chr1.1:69311951-69311970 None:intergenic 50.0%
GAAATGTTAACGAGTGCCCC+CGG - chr1.1:69314939-69314958 None:intergenic 50.0%
GAAGGGGACAAACTCTCCAA+AGG + chr1.1:69311859-69311878 MS.gene041725:CDS 50.0%
GCCAACTGTTGTGGCTACTA+AGG + chr1.1:69315241-69315260 MS.gene041725:CDS 50.0%
GCTACTAAGGATGGTCGCAT+TGG + chr1.1:69315254-69315273 MS.gene041725:CDS 50.0%
GCTGACCATACACAGAAGAG+TGG - chr1.1:69314492-69314511 None:intergenic 50.0%
GGTGCTTCAGGATGCTGATA+AGG + chr1.1:69313264-69313283 MS.gene041725:CDS 50.0%
GGTTGAAGTGGTGCGGTAAA+GGG - chr1.1:69311740-69311759 None:intergenic 50.0%
GGTTGTGGCGAAAGATGTTG+AGG + chr1.1:69312284-69312303 MS.gene041725:CDS 50.0%
GGTTTGTGGTTGAAGTGGTG+CGG - chr1.1:69311747-69311766 None:intergenic 50.0%
TAGGGGGCAATTATGGCAGT+TGG + chr1.1:69315209-69315228 MS.gene041725:intron 50.0%
TGGTAACAGAGGGGGGAAAT+AGG - chr1.1:69314369-69314388 None:intergenic 50.0%
TGGTTGAAGTGGTGCGGTAA+AGG - chr1.1:69311741-69311760 None:intergenic 50.0%
TGTCGGACACCAACTCATGT+CGG + chr1.1:69312835-69312854 MS.gene041725:intron 50.0%
TGTTTCCAAACATCCGGCGT+CGG + chr1.1:69312161-69312180 MS.gene041725:CDS 50.0%
! GTGCTGGCATGAAGATTTCG+CGG - chr1.1:69311792-69311811 None:intergenic 50.0%
! GTTGAGGCATTTGCAGCTAC+AGG + chr1.1:69312300-69312319 MS.gene041725:CDS 50.0%
! TGGTGTTGAATTGGGGACTG+TGG + chr1.1:69312368-69312387 MS.gene041725:CDS 50.0%
!! AAGACCCTTAAAGAGTGCCC+CGG + chr1.1:69314917-69314936 MS.gene041725:intron 50.0%
!! GAGAGCATCAAGTGCATCAG+TGG - chr1.1:69312481-69312500 None:intergenic 50.0%
!! GATTCTACAGGTGTTGGTGC+GGG - chr1.1:69312111-69312130 None:intergenic 50.0%
!! GGTATGCTTAAAGAGTGCCC+CGG - chr1.1:69314811-69314830 None:intergenic 50.0%
!! GTATGCTTAAAGAGTGCCCC+GGG - chr1.1:69314810-69314829 None:intergenic 50.0%
!! TATGCTTAAAGAGTGCCCCG+GGG - chr1.1:69314809-69314828 None:intergenic 50.0%
!!! GGGGTCCCTACTTTTAGAGT+TGG + chr1.1:69312444-69312463 MS.gene041725:CDS 50.0%
AACGCCGAACATTCCCAGGT+TGG - chr1.1:69315081-69315100 None:intergenic 55.0%
AATGTTAACGAGTGCCCCCG+GGG - chr1.1:69314937-69314956 None:intergenic 55.0%
ACGGTGGAGGAAGAGAGGAA+CGG - chr1.1:69311697-69311716 None:intergenic 55.0%
AGATTTCGCGGATCTTGGCG+CGG - chr1.1:69311780-69311799 None:intergenic 55.0%
ATGGAGTCGACACGTGTAGC+TGG - chr1.1:69314291-69314310 None:intergenic 55.0%
CCAGAAACCGCAGTCTTCAC+CGG - chr1.1:69312351-69312370 None:intergenic 55.0%
GATCAACGCCGAACATTCCC+AGG - chr1.1:69315085-69315104 None:intergenic 55.0%
GCAGTCGCTGTGGCTATAGA+TGG + chr1.1:69313226-69313245 MS.gene041725:CDS 55.0%
GCCGCTGCAACAACCTTCTT+CGG - chr1.1:69312138-69312157 None:intergenic 55.0%
GTCGCTGTGGCTATAGATGG+TGG + chr1.1:69313229-69313248 MS.gene041725:CDS 55.0%
GTCTCGTGTCCGACATGAGT+TGG - chr1.1:69312847-69312866 None:intergenic 55.0%
TCTTGTTAACGAGTGCCCCC+CGG + chr1.1:69314789-69314808 MS.gene041725:intron 55.0%
TGAAGTGGTGCGGTAAAGGG+AGG - chr1.1:69311737-69311756 None:intergenic 55.0%
TGCGATGGGAGATCCAACAG+CGG - chr1.1:69311986-69312005 None:intergenic 55.0%
!! AGACCCTTAAAGAGTGCCCC+GGG + chr1.1:69314918-69314937 MS.gene041725:intron 55.0%
!! AGCTACACGTGTCGACTCCA+TGG + chr1.1:69314290-69314309 MS.gene041725:intron 55.0%
!! ATGCTTAAAGAGTGCCCCGG+GGG - chr1.1:69314808-69314827 None:intergenic 55.0%
!! TGCAGCTACAGGGAGTGTTG+CGG + chr1.1:69312311-69312330 MS.gene041725:CDS 55.0%
AGGCTGCAGCTGCTTAGCTC+TGG - chr1.1:69313426-69313445 None:intergenic 60.0%
CCGGTGAAGACTGCGGTTTC+TGG + chr1.1:69312348-69312367 MS.gene041725:CDS 60.0%
CTTGTTAACGAGTGCCCCCC+GGG + chr1.1:69314790-69314809 MS.gene041725:intron 60.0%
GAAGGTGATGTCGCCGCTGT+TGG + chr1.1:69311970-69311989 MS.gene041725:CDS 60.0%
GCGGACGACGAAGTGGTTTG+TGG - chr1.1:69311761-69311780 None:intergenic 60.0%
TGGACCTTCCGGAAGGGTTG+TGG + chr1.1:69312269-69312288 MS.gene041725:CDS 60.0%
TGGGACTGGACCTTCCGGAA+GGG + chr1.1:69312263-69312282 MS.gene041725:CDS 60.0%
TGGTGCGGTAAAGGGAGGTG+CGG - chr1.1:69311732-69311751 None:intergenic 60.0%
TTCGCCACAACCCTTCCGGA+AGG - chr1.1:69312276-69312295 None:intergenic 60.0%
TTGGGACTGGACCTTCCGGA+AGG + chr1.1:69312262-69312281 MS.gene041725:CDS 60.0%
TTGTTAACGAGTGCCCCCCG+GGG + chr1.1:69314791-69314810 MS.gene041725:intron 60.0%
! GGTAAAGGGAGGTGCGGTTG+CGG - chr1.1:69311726-69311745 None:intergenic 60.0%
! TCCAAACATCCGGCGTCGGA+GGG + chr1.1:69312165-69312184 MS.gene041725:CDS 60.0%
! TTCCAAACATCCGGCGTCGG+AGG + chr1.1:69312164-69312183 MS.gene041725:CDS 60.0%
!! ACCCTTAAAGAGTGCCCCGG+GGG + chr1.1:69314920-69314939 MS.gene041725:intron 60.0%
!! AGCTACAGGGAGTGTTGCGG+CGG + chr1.1:69312314-69312333 MS.gene041725:CDS 60.0%
!! GACCCTTAAAGAGTGCCCCG+GGG + chr1.1:69314919-69314938 MS.gene041725:intron 60.0%
!! TACAGGTGTTGGTGCGGGTG+CGG - chr1.1:69312106-69312125 None:intergenic 60.0%
!! TGCTTAAAGAGTGCCCCGGG+GGG - chr1.1:69314807-69314826 None:intergenic 60.0%
CAAGGCTACTGCTCTCGCGC+TGG + chr1.1:69313132-69313151 MS.gene041725:CDS 65.0%
CAGCGCGAGAGCAGTAGCCT+TGG - chr1.1:69313134-69313153 None:intergenic 65.0%
CTTGAAGTCGGGTGCGGCTG+TGG + chr1.1:69314140-69314159 MS.gene041725:intron 65.0%
GGAGGACGGTGGAGGAAGAG+AGG - chr1.1:69311702-69311721 None:intergenic 65.0%
GGAGGGAGGGAAGAGAGTGG+TGG + chr1.1:69312182-69312201 MS.gene041725:CDS 65.0%
GTCGGAGGGAGGGAAGAGAG+TGG + chr1.1:69312179-69312198 MS.gene041725:CDS 65.0%
TCCCTCCGACGCCGGATGTT+TGG - chr1.1:69312169-69312188 None:intergenic 65.0%
TCTTGGCGCGGACGACGAAG+TGG - chr1.1:69311768-69311787 None:intergenic 65.0%
! AAACATCCGGCGTCGGAGGG+AGG + chr1.1:69312168-69312187 MS.gene041725:CDS 65.0%
! AAAGGGAGGTGCGGTTGCGG+CGG - chr1.1:69311723-69311742 None:intergenic 65.0%
! AACATCCGGCGTCGGAGGGA+GGG + chr1.1:69312169-69312188 MS.gene041725:CDS 65.0%
! GCCCCCGGGGCACTCTTTAA+GGG - chr1.1:69314924-69314943 None:intergenic 65.0%
! TGCCCCCGGGGCACTCTTTA+AGG - chr1.1:69314925-69314944 None:intergenic 65.0%
!! ACAGGTGTTGGTGCGGGTGC+GGG - chr1.1:69312105-69312124 None:intergenic 65.0%
!! TACAGGGAGTGTTGCGGCGG+CGG + chr1.1:69312317-69312336 MS.gene041725:CDS 65.0%
CTCTTCCCTCCCTCCGACGC+CGG - chr1.1:69312177-69312196 None:intergenic 70.0%
GGCGGAGCCGGTGAAGACTG+CGG + chr1.1:69312341-69312360 MS.gene041725:CDS 70.0%
!! AGGTGTTGGTGCGGGTGCGG+GGG - chr1.1:69312103-69312122 None:intergenic 70.0%
!! CAGGTGTTGGTGCGGGTGCG+GGG - chr1.1:69312104-69312123 None:intergenic 70.0%
GGTGCGGTTGCGGCGGAGGA+CGG - chr1.1:69311716-69311735 None:intergenic 75.0%
GTTGCGGCGGAGGACGGTGG+AGG - chr1.1:69311710-69311729 None:intergenic 75.0%
! GAGTGTTGCGGCGGCGGTGG+CGG + chr1.1:69312323-69312342 MS.gene041725:CDS 75.0%
!! AGGGAGTGTTGCGGCGGCGG+TGG + chr1.1:69312320-69312339 MS.gene041725:CDS 75.0%
!! GGTGTTGGTGCGGGTGCGGG+GGG - chr1.1:69312102-69312121 None:intergenic 75.0%
! GCGGTTGCGGCGGAGGACGG+TGG - chr1.1:69311713-69311732 None:intergenic 80.0%
! TGGTGCGGGTGCGGGGGGTG+CGG - chr1.1:69312097-69312116 None:intergenic 80.0%
!! GGGAGGTGCGGTTGCGGCGG+AGG - chr1.1:69311720-69311739 None:intergenic 80.0%
!! GGGGGGTGCGGGTGCAGGTG+AGG - chr1.1:69312085-69312104 None:intergenic 80.0%
!! GGTGCGGGGGGTGCGGGTGC+AGG - chr1.1:69312090-69312109 None:intergenic 85.0%
!! GGTGCGGGTGCGGGGGGTGC+GGG - chr1.1:69312096-69312115 None:intergenic 85.0%
!!! TGCGGCGGCGGTGGCGGAGC+CGG + chr1.1:69312329-69312348 MS.gene041725:CDS 85.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 69311673 69315519 69311673 ID=MS.gene041725
chr1.1 mRNA 69311673 69315519 69311673 ID=MS.gene041725.t1;Parent=MS.gene041725
chr1.1 exon 69311673 69312509 69311673 ID=MS.gene041725.t1.exon1;Parent=MS.gene041725.t1
chr1.1 CDS 69311673 69312509 69311673 ID=cds.MS.gene041725.t1;Parent=MS.gene041725.t1
chr1.1 exon 69313094 69313285 69313094 ID=MS.gene041725.t1.exon2;Parent=MS.gene041725.t1
chr1.1 CDS 69313094 69313285 69313094 ID=cds.MS.gene041725.t1;Parent=MS.gene041725.t1
chr1.1 exon 69313374 69313461 69313374 ID=MS.gene041725.t1.exon3;Parent=MS.gene041725.t1
chr1.1 CDS 69313374 69313461 69313374 ID=cds.MS.gene041725.t1;Parent=MS.gene041725.t1
chr1.1 exon 69315063 69315133 69315063 ID=MS.gene041725.t1.exon4;Parent=MS.gene041725.t1
chr1.1 CDS 69315063 69315133 69315063 ID=cds.MS.gene041725.t1;Parent=MS.gene041725.t1
chr1.1 exon 69315212 69315295 69315212 ID=MS.gene041725.t1.exon5;Parent=MS.gene041725.t1
chr1.1 CDS 69315212 69315295 69315212 ID=cds.MS.gene041725.t1;Parent=MS.gene041725.t1
chr1.1 exon 69315415 69315519 69315415 ID=MS.gene041725.t1.exon6;Parent=MS.gene041725.t1
chr1.1 CDS 69315415 69315519 69315415 ID=cds.MS.gene041725.t1;Parent=MS.gene041725.t1
Gene Sequence

>MS.gene041725

ATGTCTCAGCTTCTCCAAACACCGTTCCTCTCTTCCTCCACCGTCCTCCGCCGCAACCGCACCTCCCTTTACCGCACCACTTCAACCACAAACCACTTCGTCGTCCGCGCCAAGATCCGCGAAATCTTCATGCCAGCACTCAGTTCTACAATGACTGAGGGTAAAATTGTCTCTTGGATCAAATCAGAAGGGGACAAACTCTCCAAAGGCGATAGTGTCGTTGTTGTTGAATCCGATAAAGCTGACATGGATGTCGAAACTTTCTACGACGGTATCCTCGCCGCTATTGTTGTTGAAGAAGGTGATGTCGCCGCTGTTGGATCTCCCATCGCATTTCTCGCTGAAACTGAAGAGGAAATTGAATTAGCTAAGTGCAAAGCTCTTTCATCTTCATCTTCTTCATCATCATCCTCACCTGCACCCGCACCCCCCGCACCCGCACCAACACCTGTAGAATCTCAACCGAAGAAGGTTGTTGCAGCGGCTGTTGTTTCCAAACATCCGGCGTCGGAGGGAGGGAAGAGAGTGGTGGCATCACCCTATGCGAAGAAATTGGCGAAGGAATTGAAGGTGGAGTTGGGACAAATTATTGGGACTGGACCTTCCGGAAGGGTTGTGGCGAAAGATGTTGAGGCATTTGCAGCTACAGGGAGTGTTGCGGCGGCGGTGGCGGAGCCGGTGAAGACTGCGGTTTCTGGTGTTGAATTGGGGACTGTGGTGCCGTTTACGACAATGCAGAATGCTGTGAGTAGGAATATGGTGGAGAGTTTGGGGGTCCCTACTTTTAGAGTTGGGTATACTATTACCACTGATGCACTTGATGCTCTCTACAAGAAGGTGAATTTTTTGTTATTAATTTCATTATAATTCTCATACTGATTACATTTGATGCTAGCTAGATGACTATCACATTGGTTCTTTGGACATTATATATGCAATTACATAATTCACCATTGTTGGGATTTTTAATAAATGGGTAGTTTACTGATCTTTATAGAACACGAATGATTAGGGGAAAAAGTGTTGGCAAAGAAACTATCAGCAAATTTTAGCAAGTGTTGGCAAACACGGACACTAGACACAACACTAACACGTTGGCATTTGTAATAATTTGAGAAAATGAAATAATTTAATGTAACCACATGTGTCATTGTCGTGTTGGTGTCGGACACCAACTCATGTCGGACACGAGACACACATTTAATATGAACTGTAAATGCTACATAGATATTAGATGCTAGCCATGTATGATTGATTGCATGTTCTTCATGAAGTTGTTGTTGCAACATGCTGCTGGCAGTTTATAATAGTTTGATGTCTAAGTTTTTCAATTTATTCTGTGAACACCTTAAACTTGTAGACTCATGTTCAAACTGTTTTATACATGTTTATTGATTTTGTTTTATTTTATAAAATATCAGATCAAGTCAAAAGGAGTTACTATGACAGCATTGCTTGCCAAGGCTACTGCTCTCGCGCTGGCTAAACACCCTGTTATAAACTCTAGTTGTAGGGATGGTAATAGCTTTACATACAATAGCAGCATCAACATTGCAGTCGCTGTGGCTATAGATGGTGGACTTATTACACCGGTGCTTCAGGATGCTGATAAGGTGCTTGATACTCTATTTTGAGCTGCTTATAATCTAACATAAAATGGTGTTCACCCTGTTAAAAAGGTTTATTTGACGTATATTATAGGTTGATGTCTATTCATTGTCTAGAAAGTGGAAGGAGTTGGTTGATAAGGCCAGAGCTAAGCAGCTGCAGCCTCATGAATACACCACAGGTACAGTAATTATCTATTTATTAGGATTTATTTGATGTCTATGAACTTTCCAATTTATCATGGAATCCTTAAATTTGTGGGTAGGGACTAGGGCGATTAATAATTAACGTAGTTTGAGTCTTATACTGTATGCATATAATGTATCTTTGTCCAAAAAATTAAAAAAATGGCTTGGAGCTTTCAAACATAAATGACAGCAGCTGAGTTCATGATATGTGTATAGAATTGGTTAAATCCAGTCTACAAAACCTACTTGGTTTTATTCTTCTTGGGCTAGATTCTCCTACAATGGTGAAATCAATGACTGACAAAAATTGATAAAATCCTTGAAGAAAAGTTTGGCTAACTTTGCATTTGAAGATTGCATTTGAGTCGTTGTCAAATTTTATTGAGTGCTAAGCTATTTAATACGAGGGGTGGTGATTATGATGACAAAAAATTTGTATACATCAACTAACTTTCTAGAGGTCCTGATGATGTTCCTTAGCTGTATATTTTGAGGTTTACAATTTGAAGAGTGCTTTAAGTTAAGGTTTGGAAGAATAAATCTGGGTTTGAAAGAATTAGCAGGAGAGCTCATGTGGTTAGATCATGCCTTAAACTAGATTTGTTAATATTGCGAGAACAGGGTTTACAAAGCATGAAATTAATGATTGGAAAAGTTCACTGAAGAGATAACTTGAAGTCGGGTGCGGCTGTGGTCATAACATTCAACAGTATTGTCTGTGGTCAGTTACAAATTGGAGAGAATTACAAAAAACACCTTACAATTTCATAAACAATAAAAATCACGACCAATGTCTTATCTTACCCCACTTTAGTTAGGCCAGCTACACGTGTCGACTCCATGGAAGACCAAAGTTTCAATAAAATCATTTAACATAAGGTCTTTTTAAAAGCTTTTCCTATTTCCCCCCTCTGTTACCATTTTTAGTTTGGAAAATGCTTATCGTTACGAGAGAGTTACACAAGAAACACAAGAATCCTACATGGCTGCCTGTATATAACACTTACACATAATAACCACCCACTCTTCTGTGTATGGTCAGCCAGAACTTGATTGGTCAAATATTTAATTTAAGGATTCTTCTCTTTCTTGTATAAATCCTTCACAACAAATAGCGGTACTCTTTTAGTTTTTGCATCTTAATATTTCCAGGGAAGTTTATGGTACTATTGTTTCCCCCCTTTTTTTATAGACTATAAATTATTCCTAGTACAATTCTACCTCGTATATTCGCTTTATTTGTTTCTGCCATGGTAATCTAGAATAAACAAGTTAAACATTATACTTTCTACCAAAAGAACAAGCTATATAATGTTTGGGTCTTGTTAACGAGTGCCCCCCGGGGCACTCTTTAAGCATACCAGATTAGGAAATTATTCTTTAAAATATTCAAATAGTTCAATTTCCAATGCATTAAATACATAACTTTTCATAAAAAGTTACTATTTAAGACCCTTAAAGAGTGCCCCGGGGGCACTCGTTAACATTTCCCATAATGTTTTTACAGTTGAATTTTGACATTCAATTGGGCTAATTCAAAGACTTTTTTCTTCTGATATTTTCCCTGCTTCACTGATTTCTGTTGTTTCTCTAGGTACTTTCACTCTTTCCAACCTGGGAATGTTCGGCGTTGATCGCTTTGATGCTATTCTGCCTCCTGGAACCGTGAGTAATCTTATTTGTGATCTAATCGAAAGTGATGGCGTACGTGAATTTGATTGTTTTGTGGGTTTATTTTTGTAGGGGGCAATTATGGCAGTTGGAACATCACAGCCAACTGTTGTGGCTACTAAGGATGGTCGCATTGGCATGAAGAATCAAATGCAGGTATGAGTGTTCAGACATTTGTATATGTTGGAGTATGACTTATTTATTTTTGGTTAAAGAATCGTAAATCGATATCCAGACTTCTGTTCTTTTATAACTGAAGGAATGCAAATTTGCAGGTCAATGTTACAGCAGATCACCGTGTAATCTACGGTTCTGATCTAGCTCTGTTCTTGCAAACTCTGTCTCAGATTATTGAGGACCCTAAAGATCTTACTTTCTAG
Protein sequence

>MS.gene041725.t1

MSQLLQTPFLSSSTVLRRNRTSLYRTTSTTNHFVVRAKIREIFMPALSSTMTEGKIVSWIKSEGDKLSKGDSVVVVESDKADMDVETFYDGILAAIVVEEGDVAAVGSPIAFLAETEEEIELAKCKALSSSSSSSSSSPAPAPPAPAPTPVESQPKKVVAAAVVSKHPASEGGKRVVASPYAKKLAKELKVELGQIIGTGPSGRVVAKDVEAFAATGSVAAAVAEPVKTAVSGVELGTVVPFTTMQNAVSRNMVESLGVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALAKHPVINSSCRDGNSFTYNSSINIAVAVAIDGGLITPVLQDADKVDVYSLSRKWKELVDKARAKQLQPHEYTTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGTSQPTVVATKDGRIGMKNQMQVNVTADHRVIYGSDLALFLQTLSQIIEDPKDLTF