AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27364

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27364.t1 MTR_1g021590 97.872 470 9 1 1 469 1 470 0.0 951
MS.gene27364.t1 MTR_5g018520 60.599 401 147 6 36 434 31 422 1.99e-175 500
MS.gene27364.t1 MTR_4g068457 58.108 444 155 8 20 433 16 458 1.75e-170 489
MS.gene27364.t1 MTR_3g078380 41.056 341 177 8 114 431 70 409 1.23e-76 246
MS.gene27364.t1 MTR_8g089650 41.026 351 186 9 112 447 100 444 1.43e-76 246
MS.gene27364.t1 MTR_2g060070 39.886 351 190 9 91 431 42 381 1.70e-76 245
MS.gene27364.t1 MTR_3g110185 41.176 340 179 9 102 431 81 409 2.18e-76 255
MS.gene27364.t1 MTR_5g035980 36.203 395 202 8 87 431 49 443 1.26e-75 244
MS.gene27364.t1 MTR_4g106480 40.833 360 180 12 98 431 44 396 5.34e-75 241
MS.gene27364.t1 MTR_4g104410 38.843 363 204 9 80 431 8 363 1.07e-74 239
MS.gene27364.t1 MTR_2g101410 36.243 378 197 14 81 432 49 408 2.04e-64 214
MS.gene27364.t1 MTR_8g028700 26.190 294 192 9 104 377 223 511 2.08e-19 91.3
MS.gene27364.t1 MTR_8g032850 26.182 275 177 10 120 377 631 896 1.76e-17 85.9
MS.gene27364.t1 MTR_4g119620 25.893 224 135 8 218 430 119 322 2.26e-14 74.3
MS.gene27364.t1 MTR_8g106790 25.828 302 169 12 120 376 29 320 3.06e-13 70.9
MS.gene27364.t1 MTR_7g086360 27.624 181 117 5 218 392 97 269 3.96e-13 70.9
MS.gene27364.t1 MTR_3g088545 27.477 222 102 9 233 451 99 264 7.97e-13 70.1
MS.gene27364.t1 MTR_6g465150 28.070 228 136 8 218 442 149 351 1.10e-12 70.1
MS.gene27364.t1 MTR_6g465150 24.746 295 189 12 105 377 143 426 3.48e-12 68.6
MS.gene27364.t1 MTR_7g016970 29.858 211 115 7 215 401 117 318 1.24e-12 70.1
MS.gene27364.t1 MTR_1g072140 28.994 169 100 6 218 376 110 268 1.36e-12 68.9
MS.gene27364.t1 MTR_4g123597 25.792 221 131 6 162 378 504 695 1.91e-12 70.1
MS.gene27364.t1 MTR_4g105700 26.866 268 154 11 120 352 418 678 2.45e-12 69.7
MS.gene27364.t1 MTR_1g034785 31.132 212 112 10 215 401 114 316 1.11e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27364.t1 AT2G26490 70.784 421 114 4 19 435 7 422 0.0 615
MS.gene27364.t1 AT4G34380 58.810 437 157 6 21 441 37 466 7.87e-174 497
MS.gene27364.t1 AT3G50390 60.354 396 133 7 58 434 37 427 9.24e-166 476
MS.gene27364.t1 AT3G18950 57.077 431 168 10 13 434 45 467 4.92e-165 474
MS.gene27364.t1 AT1G49450 58.750 400 144 7 53 433 71 468 7.65e-164 471
MS.gene27364.t1 AT1G47610 68.047 338 100 5 99 431 14 348 1.80e-158 453
MS.gene27364.t1 AT1G47610 23.770 244 142 6 226 439 29 258 8.84e-11 63.9
MS.gene27364.t1 AT1G24130 42.350 366 180 9 91 431 51 410 7.45e-84 265
MS.gene27364.t1 AT5G50120 40.682 381 185 11 86 431 10 384 2.80e-83 262
MS.gene27364.t1 AT3G51930 40.169 356 186 9 110 446 62 409 1.60e-77 248
MS.gene27364.t1 AT1G24530 43.522 301 156 7 136 432 114 404 5.73e-75 241
MS.gene27364.t1 AT3G49660 28.000 225 131 9 216 430 110 313 5.14e-17 82.4
MS.gene27364.t1 AT5G49200 26.201 229 139 6 148 376 213 411 1.52e-14 75.9
MS.gene27364.t1 AT5G49200 27.477 222 133 7 218 434 130 328 1.86e-11 66.2
MS.gene27364.t1 AT3G49180 27.273 209 123 6 215 401 116 317 4.89e-14 74.3
MS.gene27364.t1 AT2G43770 25.967 181 120 5 218 392 95 267 2.55e-13 71.6
MS.gene27364.t1 AT4G25440 23.843 281 186 10 114 377 151 420 3.19e-13 71.6
MS.gene27364.t1 AT4G25440 26.316 228 140 8 218 442 143 345 3.16e-12 68.6
MS.gene27364.t1 AT4G25440 23.843 281 186 10 114 377 151 420 3.19e-13 71.6
MS.gene27364.t1 AT4G25440 26.316 228 140 8 218 442 143 345 3.16e-12 68.6
MS.gene27364.t1 AT4G25440 23.843 281 186 10 114 377 151 420 3.19e-13 71.6
MS.gene27364.t1 AT4G25440 26.316 228 140 8 218 442 143 345 3.16e-12 68.6
MS.gene27364.t1 AT5G51980 23.297 279 190 10 114 377 158 427 5.74e-13 70.9
MS.gene27364.t1 AT5G51980 28.571 224 132 8 218 438 150 348 8.13e-13 70.5
MS.gene27364.t1 AT5G51980 23.297 279 190 10 114 377 158 427 5.74e-13 70.9
MS.gene27364.t1 AT5G51980 28.571 224 132 8 218 438 150 348 8.13e-13 70.5
MS.gene27364.t1 AT3G18130 24.252 301 176 9 120 376 29 321 8.85e-13 69.7
MS.gene27364.t1 AT4G02730 25.000 224 135 10 218 429 127 329 9.02e-13 69.7
MS.gene27364.t1 AT1G48630 24.585 301 175 9 120 376 29 321 2.23e-12 68.6
MS.gene27364.t1 AT5G08390 24.454 229 149 8 208 431 5 214 2.23e-12 70.1
MS.gene27364.t1 AT1G61210 24.348 230 148 8 208 431 4 213 3.87e-12 69.3
MS.gene27364.t1 AT1G61210 24.348 230 148 8 208 431 4 213 4.81e-12 68.9
MS.gene27364.t1 AT5G52820 23.380 355 196 11 114 431 116 431 4.88e-12 68.2
MS.gene27364.t1 AT1G61210 24.348 230 148 8 208 431 4 213 5.62e-12 68.9
MS.gene27364.t1 AT3G18140 29.130 230 137 10 218 438 77 289 6.67e-12 66.6
MS.gene27364.t1 AT5G40880 25.862 232 135 7 148 376 238 435 1.45e-11 66.6
MS.gene27364.t1 AT2G22040 24.351 308 192 14 162 444 15 306 1.48e-11 65.9
MS.gene27364.t1 AT5G40880 25.862 232 135 7 148 376 267 464 1.73e-11 66.6
MS.gene27364.t1 AT5G23430 24.017 229 150 8 208 431 5 214 1.76e-11 67.0
MS.gene27364.t1 AT5G23430 24.017 229 150 8 208 431 5 214 1.77e-11 67.0
MS.gene27364.t1 AT5G23430 24.017 229 150 8 208 431 5 214 1.77e-11 67.0
MS.gene27364.t1 AT1G11160 23.478 230 150 8 208 431 4 213 3.24e-11 66.2
MS.gene27364.t1 AT1G11160 23.478 230 150 8 208 431 4 213 3.50e-11 66.2
MS.gene27364.t1 AT1G11160 23.478 230 150 8 208 431 4 213 3.54e-11 66.2
MS.gene27364.t1 AT1G15440 27.803 223 138 7 218 435 348 552 4.59e-11 65.9
MS.gene27364.t1 AT1G21650 23.488 281 169 10 110 380 522 766 6.43e-11 65.5
MS.gene27364.t1 AT3G21540 28.313 166 109 5 216 378 537 695 6.94e-11 65.1
MS.gene27364.t1 AT5G50230 24.199 281 168 14 141 398 228 486 7.12e-11 64.7
MS.gene27364.t1 AT1G15440 27.803 223 138 7 218 435 388 592 7.75e-11 65.1
MS.gene27364.t1 AT1G18080 23.529 306 177 11 118 376 27 322 7.79e-11 63.9

Find 118 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGCTTCTGCTGGGAATT+TGG 0.194944 1.2:+3007873 MS.gene27364:CDS
CTGATGGATTGGTTAACTTT+TGG 0.209928 1.2:+3007788 MS.gene27364:CDS
TAATTAGTTTCTCTTATTAC+TGG 0.260421 1.2:-3008196 None:intergenic
GATATTGTATAGTGGGAGTT+TGG 0.285081 1.2:+3008050 MS.gene27364:CDS
GGTGACCAGTGAAGATCTTT+TGG 0.314403 1.2:-3007276 None:intergenic
CTCCACTGCTAAACATTTAA+CGG 0.343230 1.2:-3007989 None:intergenic
GAAAACACCGAACTGCATTA+TGG 0.359622 1.2:+3007428 MS.gene27364:CDS
CCTATCTCTACTCCGCTTCA+TGG 0.364291 1.2:+3007500 MS.gene27364:CDS
AGGCTTCTGTTGTGGAAAAT+CGG 0.365541 1.2:-3006609 None:intergenic
GGGACAGAACCGTCAAAGTT+TGG 0.366588 1.2:+3007521 MS.gene27364:CDS
GGCTTCTGTTGTGGAAAATC+GGG 0.370681 1.2:-3006608 None:intergenic
TAGTGGGAGTTTGGATAAAT+CGG 0.379605 1.2:+3008059 MS.gene27364:CDS
TGGATAAATCGGTTAAGGTT+TGG 0.407945 1.2:+3008070 MS.gene27364:CDS
GGTTAAGGTTTGGAGTGTTT+CGG 0.415090 1.2:+3008080 MS.gene27364:CDS
AATTGACAGCACAGGTTCAA+TGG 0.416389 1.2:+3007750 MS.gene27364:CDS
CATGGGAAGTAATGGATTCC+AGG 0.418756 1.2:-3007564 None:intergenic
GAGTTTGGATAAATCGGTTA+AGG 0.419046 1.2:+3008065 MS.gene27364:CDS
TTGAAAATGTCTTTGAGAGT+TGG 0.425960 1.2:-3007370 None:intergenic
GGCAGCGCTGCTGCTTCGCA+TGG 0.427565 1.2:-3006650 None:intergenic
AGAAAAGAGGACATCATGTT+TGG 0.428247 1.2:+3006505 None:intergenic
ATTTATTCTTTAGCCGCTTC+CGG 0.433918 1.2:+3007139 MS.gene27364:CDS
GAATTTGTTGTTTGATTCCA+TGG 0.435201 1.2:-3007028 None:intergenic
TGCTTTCACCAATCCACTGT+TGG 0.441842 1.2:-3007239 None:intergenic
CCAGCACGTTTGTGAACACT+AGG 0.447862 1.2:-3007340 None:intergenic
GGCATAGTCATCGTCGGTAT+AGG 0.452886 1.2:-3006629 None:intergenic
CTGCCGGGGTCGTAGTAGTA+AGG 0.461023 1.2:-3006685 None:intergenic
GGCGATTCTCCAAACTTTGA+CGG 0.461584 1.2:-3007530 None:intergenic
GTTTATTGTGGTGCTTCTGA+TGG 0.463697 1.2:+3007772 MS.gene27364:CDS
TCCACTGCTAAACATTTAAC+GGG 0.465640 1.2:-3007988 None:intergenic
GTCGTAGTAGTAAGGGCTCA+TGG 0.469102 1.2:-3006677 None:intergenic
TTGTGGTGCTTCTGATGGAT+TGG 0.469946 1.2:+3007777 MS.gene27364:CDS
AAGACGGTAAAATCCGTGTT+TGG 0.471026 1.2:+3007299 MS.gene27364:CDS
CCATGAAGCGGAGTAGAGAT+AGG 0.474781 1.2:-3007500 None:intergenic
CAACGGTGGATATTGTATAG+TGG 0.476176 1.2:+3008042 MS.gene27364:CDS
CAGCGTTAACTGCGTCCTCA+TGG 0.479785 1.2:-3007582 None:intergenic
GCAGTTAACGCTGTCGTTTG+TGG 0.482135 1.2:+3007592 MS.gene27364:CDS
GGATTCCAGGCACTTTGAAT+CGG 0.485859 1.2:-3007551 None:intergenic
TAGCAGTTATTCTTCAAGTC+GGG 0.487480 1.2:+3008173 MS.gene27364:CDS
CCTCCACAGAATTCACTAAT+CGG 0.488284 1.2:+3007091 MS.gene27364:CDS
TTCCATGGTGACATCATCAT+TGG 0.492726 1.2:-3007013 None:intergenic
TCGTAGTAGTAAGGGCTCAT+GGG 0.499362 1.2:-3006676 None:intergenic
AATCGCCGATTCAAAGTGCC+TGG 0.500236 1.2:+3007546 MS.gene27364:CDS
TAAATGTTTAGCAGTGGAGC+AGG 0.501256 1.2:+3007993 MS.gene27364:CDS
ATTTCGGAATTCAGATTAAG+TGG 0.505622 1.2:+3006980 MS.gene27364:intron
ATGTTTGGCAGCAACAGAAA+TGG 0.507504 1.2:+3006520 MS.gene27364:CDS
GACCATTGTGGCTTTGAGAA+TGG 0.507721 1.2:-3007052 None:intergenic
CACTTTAACTGTTCCGTCTG+CGG 0.512345 1.2:-3007641 None:intergenic
AATAAATGTGACCCTCTTCG+CGG 0.519114 1.2:-3007123 None:intergenic
CGAACCTCGACATAATTGCT+TGG 0.519441 1.2:-3007406 None:intergenic
GACGGTTCTGTCCCATGAAG+CGG 0.520394 1.2:-3007512 None:intergenic
TGCGTCCTCATGGGAAGTAA+TGG 0.522213 1.2:-3007572 None:intergenic
GAGTGTTTCGGAGAGTATGC+AGG 0.525774 1.2:+3008092 MS.gene27364:CDS
TCCGGCCAAAAGATCTTCAC+TGG 0.528849 1.2:+3007271 MS.gene27364:CDS
GAATTCACTAATCGGTTCAC+TGG 0.529725 1.2:+3007099 MS.gene27364:CDS
TGAAGCGGACTCGATACCTT+CGG 0.529765 1.2:+3008143 MS.gene27364:CDS
CTATCTCTACTCCGCTTCAT+GGG 0.530420 1.2:+3007501 MS.gene27364:CDS
GGTTCACTGGTCCGCGAAGA+GGG 0.531067 1.2:+3007112 MS.gene27364:CDS
AACGGTGGATATTGTATAGT+GGG 0.531227 1.2:+3008043 MS.gene27364:CDS
ATTCAAATCCAACAGTGGAT+TGG 0.533748 1.2:+3007231 MS.gene27364:CDS
GTATAATAAGTCACCGGAAG+CGG 0.536150 1.2:-3007152 None:intergenic
GTTTGATCCATAATGCAGTT+CGG 0.536393 1.2:-3007435 None:intergenic
TGAACATGGTGGGGTCCTCA+AGG 0.536617 1.2:+3007828 MS.gene27364:CDS
ATAAGCAATTTGAACATGGT+GGG 0.539684 1.2:+3007818 MS.gene27364:CDS
AACAGAAATGGTAGCAGCAA+TGG 0.541943 1.2:+3006532 MS.gene27364:CDS
ACTTGAAGAATAACTGCTAT+CGG 0.549184 1.2:-3008169 None:intergenic
CGTAGTAGTAAGGGCTCATG+GGG 0.557738 1.2:-3006675 None:intergenic
AGCGTTAACTGCGTCCTCAT+GGG 0.560203 1.2:-3007581 None:intergenic
TCCGGTGACTTATTATACAC+TGG 0.561865 1.2:+3007157 MS.gene27364:CDS
CCTAGTGTTCACAAACGTGC+TGG 0.563233 1.2:+3007340 MS.gene27364:CDS
GTGAAAGCAATCATAATCTC+CGG 0.564651 1.2:+3007253 MS.gene27364:CDS
GACTTCTATGACTTCTGAAG+CGG 0.565569 1.2:+3008128 MS.gene27364:CDS
CAGAAGTCATAGAAGTCATA+CGG 0.569108 1.2:-3008122 None:intergenic
GCTTTAGCAATTGACAGCAC+AGG 0.572390 1.2:+3007742 MS.gene27364:CDS
GAATTCAGATTAAGTGGTGA+GGG 0.574833 1.2:+3006986 MS.gene27364:intron
ACAGGTTCAATGGTTTATTG+TGG 0.574899 1.2:+3007760 MS.gene27364:CDS
TAAAACAACAAAACATGCAA+TGG 0.575977 1.2:+3007684 MS.gene27364:CDS
CGGTTCACTGGTCCGCGAAG+AGG 0.577185 1.2:+3007111 MS.gene27364:CDS
GATTGCATGAACTGTGGACG+AGG 0.578526 1.2:-3006580 None:intergenic
GTCGGTATAGGCTTCTGTTG+TGG 0.580739 1.2:-3006617 None:intergenic
TCCCGTTAAATGTTTAGCAG+TGG 0.585347 1.2:+3007987 MS.gene27364:CDS
GAACATGGTGGGGTCCTCAA+GGG 0.590913 1.2:+3007829 MS.gene27364:CDS
ATAGCAGTTATTCTTCAAGT+CGG 0.598933 1.2:+3008172 MS.gene27364:CDS
ATCTTCACTGGTCACCAAGA+CGG 0.606747 1.2:+3007283 MS.gene27364:CDS
GCCAGTGTATAATAAGTCAC+CGG 0.607754 1.2:-3007158 None:intergenic
AAGAATCTTCAAGAATATTG+CGG 0.611703 1.2:+3007208 MS.gene27364:CDS
CGTGATAAGCAATTTGAACA+TGG 0.614622 1.2:+3007814 MS.gene27364:CDS
TGAGAGAAACTTTCCAAACA+CGG 0.617451 1.2:-3007312 None:intergenic
GGAATTCAGATTAAGTGGTG+AGG 0.618381 1.2:+3006985 MS.gene27364:intron
CTTACTACTACGACCCCGGC+AGG 0.625720 1.2:+3006686 MS.gene27364:CDS
TCTTCATGTTGTGACCATTG+TGG 0.628476 1.2:-3007064 None:intergenic
TAAGCAATTTGAACATGGTG+GGG 0.630149 1.2:+3007819 MS.gene27364:CDS
TAAACCAAGCAATTATGTCG+AGG 0.630261 1.2:+3007402 MS.gene27364:CDS
ACGCTAGAGGCGATCAACGG+TGG 0.631359 1.2:+3008028 MS.gene27364:CDS
TGCCGGGGTCGTAGTAGTAA+GGG 0.633486 1.2:-3006684 None:intergenic
GATAAGCAATTTGAACATGG+TGG 0.635398 1.2:+3007817 MS.gene27364:CDS
ATATGTGTGTGGAAAAGAGA+CGG 0.638236 1.2:+3007922 MS.gene27364:CDS
GTGACGCTAGAGGCGATCAA+CGG 0.644346 1.2:+3008025 MS.gene27364:CDS
GAACTGTGGACGAGGTATGT+TGG 0.644937 1.2:-3006572 None:intergenic
CTGATAAAACTATATGTGTG+TGG 0.648294 1.2:+3007911 MS.gene27364:CDS
CACCATTCTCAAAGCCACAA+TGG 0.648605 1.2:+3007050 MS.gene27364:CDS
GCTTCTGTTGTGGAAAATCG+GGG 0.650013 1.2:-3006607 None:intergenic
CAGCACGTTTGTGAACACTA+GGG 0.651977 1.2:-3007339 None:intergenic
GCTGTCGTTTGTGGAAATGA+CGG 0.653068 1.2:+3007601 MS.gene27364:CDS
TGCGGATTCAAATCCAACAG+TGG 0.653646 1.2:+3007226 MS.gene27364:CDS
CACCAATGATGATGTCACCA+TGG 0.656028 1.2:+3007011 MS.gene27364:CDS
TCGCATGGCATAGTCATCGT+CGG 0.657109 1.2:-3006635 None:intergenic
GATCGCGAATGTGACGCTAG+AGG 0.658722 1.2:+3008015 MS.gene27364:CDS
GGTTCAGATTGCATGAACTG+TGG 0.659555 1.2:-3006586 None:intergenic
AGCCCTTACTACTACGACCC+CGG 0.660537 1.2:+3006682 MS.gene27364:CDS
GAACCGATTAGTGAATTCTG+TGG 0.660596 1.2:-3007094 None:intergenic
CAGACGGAACAGTTAAAGTG+TGG 0.670124 1.2:+3007644 MS.gene27364:CDS
ACAGCAAGAACATTCGTGTG+TGG 0.678557 1.2:+3007185 MS.gene27364:CDS
CTGCAAGCTTATGACCCTTG+AGG 0.683943 1.2:-3007843 None:intergenic
CCGATTAGTGAATTCTGTGG+AGG 0.708658 1.2:-3007091 None:intergenic
GGAATCCATTACTTCCCATG+AGG 0.720737 1.2:+3007567 MS.gene27364:CDS
TAACTGCTATCGGATTCCGA+AGG 0.748944 1.2:-3008159 None:intergenic
GTGTGGCGAAGAGAAGCACG+TGG 0.779519 1.2:+3007661 MS.gene27364:CDS
GTAGTAGTAAGGGCTCATGG+GGG 0.834324 1.2:-3006674 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAAGAAAATGAAAA+AGG - chr1.2:3006717-3006736 None:intergenic 10.0%
!!! AATAACATTTTATTTAGATT+TGG - chr1.2:3006916-3006935 None:intergenic 10.0%
!!! CTTATAGTTAATTTGAATTT+CGG + chr1.2:3006964-3006983 MS.gene27364:intron 15.0%
!! CAAATTCAATTTACATCAAA+CGG - chr1.2:3006849-3006868 None:intergenic 20.0%
! AAGAATCTTCAAGAATATTG+CGG + chr1.2:3007208-3007227 MS.gene27364:CDS 25.0%
! TAAAACAACAAAACATGCAA+TGG + chr1.2:3007684-3007703 MS.gene27364:CDS 25.0%
!! ATTGAATTTGAGTTCACAAA+CGG + chr1.2:3006859-3006878 MS.gene27364:intron 25.0%
ACTTGAAGAATAACTGCTAT+CGG - chr1.2:3008172-3008191 None:intergenic 30.0%
ATAAGCAATTTGAACATGGT+GGG + chr1.2:3007818-3007837 MS.gene27364:CDS 30.0%
ATAGCAGTTATTCTTCAAGT+CGG + chr1.2:3008172-3008191 MS.gene27364:CDS 30.0%
ATTTCGGAATTCAGATTAAG+TGG + chr1.2:3006980-3006999 MS.gene27364:intron 30.0%
CTGATAAAACTATATGTGTG+TGG + chr1.2:3007911-3007930 MS.gene27364:CDS 30.0%
! TTGAAAATGTCTTTGAGAGT+TGG - chr1.2:3007373-3007392 None:intergenic 30.0%
!! GAATTTGTTGTTTGATTCCA+TGG - chr1.2:3007031-3007050 None:intergenic 30.0%
!!! TGATGGATTGGTTAACTTTT+GGG + chr1.2:3007789-3007808 MS.gene27364:CDS 30.0%
AACGGTGGATATTGTATAGT+GGG + chr1.2:3008043-3008062 MS.gene27364:CDS 35.0%
ACAGGTTCAATGGTTTATTG+TGG + chr1.2:3007760-3007779 MS.gene27364:CDS 35.0%
ATATGTGTGTGGAAAAGAGA+CGG + chr1.2:3007922-3007941 MS.gene27364:CDS 35.0%
ATTCAAATCCAACAGTGGAT+TGG + chr1.2:3007231-3007250 MS.gene27364:CDS 35.0%
ATTTATTCTTTAGCCGCTTC+CGG + chr1.2:3007139-3007158 MS.gene27364:CDS 35.0%
CAGAAGTCATAGAAGTCATA+CGG - chr1.2:3008125-3008144 None:intergenic 35.0%
CGTGATAAGCAATTTGAACA+TGG + chr1.2:3007814-3007833 MS.gene27364:CDS 35.0%
CTCCACTGCTAAACATTTAA+CGG - chr1.2:3007992-3008011 None:intergenic 35.0%
GAATTCAGATTAAGTGGTGA+GGG + chr1.2:3006986-3007005 MS.gene27364:intron 35.0%
GAGTTTGGATAAATCGGTTA+AGG + chr1.2:3008065-3008084 MS.gene27364:CDS 35.0%
GATAAGCAATTTGAACATGG+TGG + chr1.2:3007817-3007836 MS.gene27364:CDS 35.0%
GTGAAAGCAATCATAATCTC+CGG + chr1.2:3007253-3007272 MS.gene27364:CDS 35.0%
GTTTGATCCATAATGCAGTT+CGG - chr1.2:3007438-3007457 None:intergenic 35.0%
TAAACCAAGCAATTATGTCG+AGG + chr1.2:3007402-3007421 MS.gene27364:CDS 35.0%
TAAGCAATTTGAACATGGTG+GGG + chr1.2:3007819-3007838 MS.gene27364:CDS 35.0%
TAGCAGTTATTCTTCAAGTC+GGG + chr1.2:3008173-3008192 MS.gene27364:CDS 35.0%
TAGTGGGAGTTTGGATAAAT+CGG + chr1.2:3008059-3008078 MS.gene27364:CDS 35.0%
TCCACTGCTAAACATTTAAC+GGG - chr1.2:3007991-3008010 None:intergenic 35.0%
TGAGAGAAACTTTCCAAACA+CGG - chr1.2:3007315-3007334 None:intergenic 35.0%
TGGATAAATCGGTTAAGGTT+TGG + chr1.2:3008070-3008089 MS.gene27364:CDS 35.0%
TTAGATTTGGATTCTCTGCA+TGG - chr1.2:3006903-3006922 None:intergenic 35.0%
! GATATTGTATAGTGGGAGTT+TGG + chr1.2:3008050-3008069 MS.gene27364:CDS 35.0%
!! AATGACGGAATTGTTTTCTC+TGG + chr1.2:3007616-3007635 MS.gene27364:CDS 35.0%
!! CACGTGTATGTCTGTTTTAA+CGG + chr1.2:3007954-3007973 MS.gene27364:CDS 35.0%
!! TTTTGTGTTTAGCTTCTGCT+GGG + chr1.2:3007866-3007885 MS.gene27364:CDS 35.0%
!!! ACGTGTATGTCTGTTTTAAC+GGG + chr1.2:3007955-3007974 MS.gene27364:CDS 35.0%
!!! CTGATGGATTGGTTAACTTT+TGG + chr1.2:3007788-3007807 MS.gene27364:CDS 35.0%
AACAGAAATGGTAGCAGCAA+TGG + chr1.2:3006532-3006551 MS.gene27364:CDS 40.0%
AAGACGGTAAAATCCGTGTT+TGG + chr1.2:3007299-3007318 MS.gene27364:CDS 40.0%
AATAAATGTGACCCTCTTCG+CGG - chr1.2:3007126-3007145 None:intergenic 40.0%
AATTGACAGCACAGGTTCAA+TGG + chr1.2:3007750-3007769 MS.gene27364:CDS 40.0%
AGGCTTCTGTTGTGGAAAAT+CGG - chr1.2:3006612-3006631 None:intergenic 40.0%
ATGTTTGGCAGCAACAGAAA+TGG + chr1.2:3006520-3006539 MS.gene27364:CDS 40.0%
CAACGGTGGATATTGTATAG+TGG + chr1.2:3008042-3008061 MS.gene27364:CDS 40.0%
CCTCCACAGAATTCACTAAT+CGG + chr1.2:3007091-3007110 MS.gene27364:CDS 40.0%
GAAAACACCGAACTGCATTA+TGG + chr1.2:3007428-3007447 MS.gene27364:CDS 40.0%
GAACCGATTAGTGAATTCTG+TGG - chr1.2:3007097-3007116 None:intergenic 40.0%
GCCAGTGTATAATAAGTCAC+CGG - chr1.2:3007161-3007180 None:intergenic 40.0%
GGAATTCAGATTAAGTGGTG+AGG + chr1.2:3006985-3007004 MS.gene27364:intron 40.0%
GTATAATAAGTCACCGGAAG+CGG - chr1.2:3007155-3007174 None:intergenic 40.0%
GTTTATTGTGGTGCTTCTGA+TGG + chr1.2:3007772-3007791 MS.gene27364:CDS 40.0%
TAAATGTTTAGCAGTGGAGC+AGG + chr1.2:3007993-3008012 MS.gene27364:CDS 40.0%
TCCCGTTAAATGTTTAGCAG+TGG + chr1.2:3007987-3008006 MS.gene27364:CDS 40.0%
TCCGGTGACTTATTATACAC+TGG + chr1.2:3007157-3007176 MS.gene27364:CDS 40.0%
TCTTCATGTTGTGACCATTG+TGG - chr1.2:3007067-3007086 None:intergenic 40.0%
TTCCATGGTGACATCATCAT+TGG - chr1.2:3007016-3007035 None:intergenic 40.0%
TTGGATTCTCTGCATGAACA+TGG + chr1.2:3006806-3006825 MS.gene27364:intron 40.0%
! AAACACGGATTTTACCGTCT+TGG - chr1.2:3007300-3007319 None:intergenic 40.0%
! GAATTCACTAATCGGTTCAC+TGG + chr1.2:3007099-3007118 MS.gene27364:CDS 40.0%
! GACTTCTATGACTTCTGAAG+CGG + chr1.2:3008128-3008147 MS.gene27364:CDS 40.0%
! GGTTAAGGTTTGGAGTGTTT+CGG + chr1.2:3008080-3008099 MS.gene27364:CDS 40.0%
! TTTAGCTTCTGCTGGGAATT+TGG + chr1.2:3007873-3007892 MS.gene27364:CDS 40.0%
! TTTTGTCTGGAGAGAGACTT+AGG - chr1.2:3007480-3007499 None:intergenic 40.0%
!! GAGTAGAGATAGGTTTTGTC+TGG - chr1.2:3007493-3007512 None:intergenic 40.0%
!! GTTTTGTGTTTAGCTTCTGC+TGG + chr1.2:3007865-3007884 MS.gene27364:CDS 40.0%
!!! GCTGGGAATTTGGTTTTTAG+TGG + chr1.2:3007883-3007902 MS.gene27364:CDS 40.0%
ACAGCAAGAACATTCGTGTG+TGG + chr1.2:3007185-3007204 MS.gene27364:CDS 45.0%
ATCTTCACTGGTCACCAAGA+CGG + chr1.2:3007283-3007302 MS.gene27364:CDS 45.0%
ATGAAAAAGGAGAGACCTGC+CGG - chr1.2:3006704-3006723 None:intergenic 45.0%
CACCATTCTCAAAGCCACAA+TGG + chr1.2:3007050-3007069 MS.gene27364:CDS 45.0%
CACTTTAACTGTTCCGTCTG+CGG - chr1.2:3007644-3007663 None:intergenic 45.0%
CAGACGGAACAGTTAAAGTG+TGG + chr1.2:3007644-3007663 MS.gene27364:CDS 45.0%
CAGCACGTTTGTGAACACTA+GGG - chr1.2:3007342-3007361 None:intergenic 45.0%
CCAAATAGCTCGTCTAGCTA+AGG - chr1.2:3006790-3006809 None:intergenic 45.0%
CCGATTAGTGAATTCTGTGG+AGG - chr1.2:3007094-3007113 None:intergenic 45.0%
CCTTAGCTAGACGAGCTATT+TGG + chr1.2:3006787-3006806 MS.gene27364:intron 45.0%
CGAACCTCGACATAATTGCT+TGG - chr1.2:3007409-3007428 None:intergenic 45.0%
CTATCTCTACTCCGCTTCAT+GGG + chr1.2:3007501-3007520 MS.gene27364:CDS 45.0%
GCTTCTGTTGTGGAAAATCG+GGG - chr1.2:3006610-3006629 None:intergenic 45.0%
GCTTTAGCAATTGACAGCAC+AGG + chr1.2:3007742-3007761 MS.gene27364:CDS 45.0%
GGAATCCATTACTTCCCATG+AGG + chr1.2:3007567-3007586 MS.gene27364:CDS 45.0%
GGATTCCAGGCACTTTGAAT+CGG - chr1.2:3007554-3007573 None:intergenic 45.0%
GGCGATTCTCCAAACTTTGA+CGG - chr1.2:3007533-3007552 None:intergenic 45.0%
GGCTTCTGTTGTGGAAAATC+GGG - chr1.2:3006611-3006630 None:intergenic 45.0%
GGTTCAGATTGCATGAACTG+TGG - chr1.2:3006589-3006608 None:intergenic 45.0%
TAACTGCTATCGGATTCCGA+AGG - chr1.2:3008162-3008181 None:intergenic 45.0%
TCGTAGTAGTAAGGGCTCAT+GGG - chr1.2:3006679-3006698 None:intergenic 45.0%
TGCGGATTCAAATCCAACAG+TGG + chr1.2:3007226-3007245 MS.gene27364:CDS 45.0%
TGCTTTCACCAATCCACTGT+TGG - chr1.2:3007242-3007261 None:intergenic 45.0%
! ACCAGTGAAGATCTTTTGGC+CGG - chr1.2:3007275-3007294 None:intergenic 45.0%
! CACCAATGATGATGTCACCA+TGG + chr1.2:3007011-3007030 MS.gene27364:CDS 45.0%
! GCTGTCGTTTGTGGAAATGA+CGG + chr1.2:3007601-3007620 MS.gene27364:CDS 45.0%
! GGTGACCAGTGAAGATCTTT+TGG - chr1.2:3007279-3007298 None:intergenic 45.0%
! TTGTGGTGCTTCTGATGGAT+TGG + chr1.2:3007777-3007796 MS.gene27364:CDS 45.0%
!! CATGGGAAGTAATGGATTCC+AGG - chr1.2:3007567-3007586 None:intergenic 45.0%
!! GACCATTGTGGCTTTGAGAA+TGG - chr1.2:3007055-3007074 None:intergenic 45.0%
!!! TCTGTTTTAACGGGACACGA+TGG + chr1.2:3007964-3007983 MS.gene27364:CDS 45.0%
AGCGTTAACTGCGTCCTCAT+GGG - chr1.2:3007584-3007603 None:intergenic 50.0%
CCAGCACGTTTGTGAACACT+AGG - chr1.2:3007343-3007362 None:intergenic 50.0%
CCATGAAGCGGAGTAGAGAT+AGG - chr1.2:3007503-3007522 None:intergenic 50.0%
CCTAGTGTTCACAAACGTGC+TGG + chr1.2:3007340-3007359 MS.gene27364:CDS 50.0%
CCTATCTCTACTCCGCTTCA+TGG + chr1.2:3007500-3007519 MS.gene27364:CDS 50.0%
CGTAGTAGTAAGGGCTCATG+GGG - chr1.2:3006678-3006697 None:intergenic 50.0%
CTGCAAGCTTATGACCCTTG+AGG - chr1.2:3007846-3007865 None:intergenic 50.0%
GAACTGTGGACGAGGTATGT+TGG - chr1.2:3006575-3006594 None:intergenic 50.0%
GATTGCATGAACTGTGGACG+AGG - chr1.2:3006583-3006602 None:intergenic 50.0%
GGCATAGTCATCGTCGGTAT+AGG - chr1.2:3006632-3006651 None:intergenic 50.0%
GGGACAGAACCGTCAAAGTT+TGG + chr1.2:3007521-3007540 MS.gene27364:CDS 50.0%
GTAGTAGTAAGGGCTCATGG+GGG - chr1.2:3006677-3006696 None:intergenic 50.0%
GTCGGTATAGGCTTCTGTTG+TGG - chr1.2:3006620-3006639 None:intergenic 50.0%
GTCGTAGTAGTAAGGGCTCA+TGG - chr1.2:3006680-3006699 None:intergenic 50.0%
TCCGGCCAAAAGATCTTCAC+TGG + chr1.2:3007271-3007290 MS.gene27364:CDS 50.0%
TCGCATGGCATAGTCATCGT+CGG - chr1.2:3006638-3006657 None:intergenic 50.0%
TGAAAAAGGAGAGACCTGCC+GGG - chr1.2:3006703-3006722 None:intergenic 50.0%
TGCGTCCTCATGGGAAGTAA+TGG - chr1.2:3007575-3007594 None:intergenic 50.0%
! GAGTGTTTCGGAGAGTATGC+AGG + chr1.2:3008092-3008111 MS.gene27364:CDS 50.0%
! GCAGTTAACGCTGTCGTTTG+TGG + chr1.2:3007592-3007611 MS.gene27364:CDS 50.0%
! TGAAGCGGACTCGATACCTT+CGG + chr1.2:3008143-3008162 MS.gene27364:CDS 50.0%
!! AATCGCCGATTCAAAGTGCC+TGG + chr1.2:3007546-3007565 MS.gene27364:CDS 50.0%
!! GTTTTCTCTGGTTCCGCAGA+CGG + chr1.2:3007628-3007647 MS.gene27364:CDS 50.0%
AGCCCTTACTACTACGACCC+CGG + chr1.2:3006682-3006701 MS.gene27364:CDS 55.0%
CAGCGTTAACTGCGTCCTCA+TGG - chr1.2:3007585-3007604 None:intergenic 55.0%
GAAAAAGGAGAGACCTGCCG+GGG - chr1.2:3006702-3006721 None:intergenic 55.0%
GACGGTTCTGTCCCATGAAG+CGG - chr1.2:3007515-3007534 None:intergenic 55.0%
GATCGCGAATGTGACGCTAG+AGG + chr1.2:3008015-3008034 MS.gene27364:CDS 55.0%
GTGACGCTAGAGGCGATCAA+CGG + chr1.2:3008025-3008044 MS.gene27364:CDS 55.0%
TGCCGGGGTCGTAGTAGTAA+GGG - chr1.2:3006687-3006706 None:intergenic 55.0%
! GAACATGGTGGGGTCCTCAA+GGG + chr1.2:3007829-3007848 MS.gene27364:CDS 55.0%
! TGAACATGGTGGGGTCCTCA+AGG + chr1.2:3007828-3007847 MS.gene27364:CDS 55.0%
ACGCTAGAGGCGATCAACGG+TGG + chr1.2:3008028-3008047 MS.gene27364:CDS 60.0%
CTGCCGGGGTCGTAGTAGTA+AGG - chr1.2:3006688-3006707 None:intergenic 60.0%
CTTACTACTACGACCCCGGC+AGG + chr1.2:3006686-3006705 MS.gene27364:CDS 60.0%
GGTTCACTGGTCCGCGAAGA+GGG + chr1.2:3007112-3007131 MS.gene27364:CDS 60.0%
GTAGTAAGGGCTCATGGGGG+AGG - chr1.2:3006674-3006693 None:intergenic 60.0%
! GTGTGGCGAAGAGAAGCACG+TGG + chr1.2:3007661-3007680 MS.gene27364:CDS 60.0%
CGGTTCACTGGTCCGCGAAG+AGG + chr1.2:3007111-3007130 MS.gene27364:CDS 65.0%
! GGCAGCGCTGCTGCTTCGCA+TGG - chr1.2:3006653-3006672 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 3006520 3008215 3006520 ID=MS.gene27364
chr1.2 mRNA 3006520 3008215 3006520 ID=MS.gene27364.t1;Parent=MS.gene27364
chr1.2 exon 3006520 3006707 3006520 ID=MS.gene27364.t1.exon1;Parent=MS.gene27364.t1
chr1.2 CDS 3006520 3006707 3006520 ID=cds.MS.gene27364.t1;Parent=MS.gene27364.t1
chr1.2 exon 3006994 3008215 3006994 ID=MS.gene27364.t1.exon2;Parent=MS.gene27364.t1
chr1.2 CDS 3006994 3008215 3006994 ID=cds.MS.gene27364.t1;Parent=MS.gene27364.t1
Gene Sequence

>MS.gene27364

ATGTTTGGCAGCAACAGAAATGGTAGCAGCAATGGCAGTAGCAACAACAACACCAACATACCTCGTCCACAGTTCATGCAATCTGAACCCCGATTTTCCACAACAGAAGCCTATACCGACGATGACTATGCCATGCGAAGCAGCAGCGCTGCCTCCCCCATGAGCCCTTACTACTACGACCCCGGCAGGTCTCTCCTTTTTCATTTTCTTTATTTATTTTACATAAGTTAGTGAATACGTCAAAGTTCTTTATTTATGTTCGATGATCCTTAGCTAGACGAGCTATTTGGATTCTCTGCATGAACATGGTGCAGTTCACTGTAGAACCGTTTGATGTAAATTGAATTTGAGTTCACAAACGGCTCTGCAATGCTGCTGCACCATGCAGAGAATCCAAATCTAAATAAAATGTTATTATTGTAATCTAAATTTAATCGTTGCTAACTTATAGTTAATTTGAATTTCGGAATTCAGATTAAGTGGTGAGGGCTCACCAATGATGATGTCACCATGGAATCAAACAACAAATTCACCATTCTCAAAGCCACAATGGTCACAACATGAAGACACACCTCCACAGAATTCACTAATCGGTTCACTGGTCCGCGAAGAGGGTCACATTTATTCTTTAGCCGCTTCCGGTGACTTATTATACACTGGCTCAGACAGCAAGAACATTCGTGTGTGGAAGAATCTTCAAGAATATTGCGGATTCAAATCCAACAGTGGATTGGTGAAAGCAATCATAATCTCCGGCCAAAAGATCTTCACTGGTCACCAAGACGGTAAAATCCGTGTTTGGAAAGTTTCTCTCAAGAACCCTAGTGTTCACAAACGTGCTGGAACATTGCCAACTCTCAAAGACATTTTCAAAAGCTCGATTAAACCAAGCAATTATGTCGAGGTTCGAAAACACCGAACTGCATTATGGATCAAACATTCTGATGCAGTTTCATGCCTAAGTCTCTCTCCAGACAAAACCTATCTCTACTCCGCTTCATGGGACAGAACCGTCAAAGTTTGGAGAATCGCCGATTCAAAGTGCCTGGAATCCATTACTTCCCATGAGGACGCAGTTAACGCTGTCGTTTGTGGAAATGACGGAATTGTTTTCTCTGGTTCCGCAGACGGAACAGTTAAAGTGTGGCGAAGAGAAGCACGTGGTAAAACAACAAAACATGCAATGGTTAAACAACTTTTAAAACAAGAATGTGCAGTAACTGCTTTAGCAATTGACAGCACAGGTTCAATGGTTTATTGTGGTGCTTCTGATGGATTGGTTAACTTTTGGGAACGTGATAAGCAATTTGAACATGGTGGGGTCCTCAAGGGTCATAAGCTTGCAGTTTTGTGTTTAGCTTCTGCTGGGAATTTGGTTTTTAGTGGTTCAGCTGATAAAACTATATGTGTGTGGAAAAGAGACGGAGTTATTCACACGTGTATGTCTGTTTTAACGGGACACGATGGTCCCGTTAAATGTTTAGCAGTGGAGCAGGATCGCGAATGTGACGCTAGAGGCGATCAACGGTGGATATTGTATAGTGGGAGTTTGGATAAATCGGTTAAGGTTTGGAGTGTTTCGGAGAGTATGCAGGTACAACACCGTATGACTTCTATGACTTCTGAAGCGGACTCGATACCTTCGGAATCCGATAGCAGTTATTCTTCAAGTCGGGCCAGTAATAAGAGAAACTAA
Protein sequence

>MS.gene27364.t1

MFGSNRNGSSNGSSNNNTNIPRPQFMQSEPRFSTTEAYTDDDYAMRSSSAASPMSPYYYDPGRLSGEGSPMMMSPWNQTTNSPFSKPQWSQHEDTPPQNSLIGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLQEYCGFKSNSGLVKAIIISGQKIFTGHQDGKIRVWKVSLKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRKHRTALWIKHSDAVSCLSLSPDKTYLYSASWDRTVKVWRIADSKCLESITSHEDAVNAVVCGNDGIVFSGSADGTVKVWRREARGKTTKHAMVKQLLKQECAVTALAIDSTGSMVYCGASDGLVNFWERDKQFEHGGVLKGHKLAVLCLASAGNLVFSGSADKTICVWKRDGVIHTCMSVLTGHDGPVKCLAVEQDRECDARGDQRWILYSGSLDKSVKVWSVSESMQVQHRMTSMTSEADSIPSESDSSYSSSRASNKRN