AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062739

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062739.t1 MTR_1g021590 97.872 470 9 1 1 469 1 470 0.0 951
MS.gene062739.t1 MTR_5g018520 60.599 401 147 6 36 434 31 422 1.99e-175 500
MS.gene062739.t1 MTR_4g068457 58.108 444 155 8 20 433 16 458 1.75e-170 489
MS.gene062739.t1 MTR_3g078380 41.056 341 177 8 114 431 70 409 1.23e-76 246
MS.gene062739.t1 MTR_8g089650 41.026 351 186 9 112 447 100 444 1.43e-76 246
MS.gene062739.t1 MTR_2g060070 39.886 351 190 9 91 431 42 381 1.70e-76 245
MS.gene062739.t1 MTR_3g110185 41.176 340 179 9 102 431 81 409 2.18e-76 255
MS.gene062739.t1 MTR_5g035980 36.203 395 202 8 87 431 49 443 1.26e-75 244
MS.gene062739.t1 MTR_4g106480 40.833 360 180 12 98 431 44 396 5.34e-75 241
MS.gene062739.t1 MTR_4g104410 38.843 363 204 9 80 431 8 363 1.07e-74 239
MS.gene062739.t1 MTR_2g101410 36.243 378 197 14 81 432 49 408 2.04e-64 214
MS.gene062739.t1 MTR_8g028700 26.190 294 192 9 104 377 223 511 2.08e-19 91.3
MS.gene062739.t1 MTR_8g032850 26.182 275 177 10 120 377 631 896 1.76e-17 85.9
MS.gene062739.t1 MTR_4g119620 25.893 224 135 8 218 430 119 322 2.26e-14 74.3
MS.gene062739.t1 MTR_8g106790 25.828 302 169 12 120 376 29 320 3.06e-13 70.9
MS.gene062739.t1 MTR_7g086360 27.624 181 117 5 218 392 97 269 3.96e-13 70.9
MS.gene062739.t1 MTR_3g088545 27.477 222 102 9 233 451 99 264 7.97e-13 70.1
MS.gene062739.t1 MTR_6g465150 28.070 228 136 8 218 442 149 351 1.10e-12 70.1
MS.gene062739.t1 MTR_6g465150 24.746 295 189 12 105 377 143 426 3.48e-12 68.6
MS.gene062739.t1 MTR_7g016970 29.858 211 115 7 215 401 117 318 1.24e-12 70.1
MS.gene062739.t1 MTR_1g072140 28.994 169 100 6 218 376 110 268 1.36e-12 68.9
MS.gene062739.t1 MTR_4g123597 25.792 221 131 6 162 378 504 695 1.91e-12 70.1
MS.gene062739.t1 MTR_4g105700 26.866 268 154 11 120 352 418 678 2.45e-12 69.7
MS.gene062739.t1 MTR_1g034785 31.132 212 112 10 215 401 114 316 1.11e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062739.t1 AT2G26490 70.784 421 114 4 19 435 7 422 0.0 615
MS.gene062739.t1 AT4G34380 58.810 437 157 6 21 441 37 466 7.87e-174 497
MS.gene062739.t1 AT3G50390 60.354 396 133 7 58 434 37 427 9.24e-166 476
MS.gene062739.t1 AT3G18950 57.077 431 168 10 13 434 45 467 4.92e-165 474
MS.gene062739.t1 AT1G49450 58.750 400 144 7 53 433 71 468 7.65e-164 471
MS.gene062739.t1 AT1G47610 68.047 338 100 5 99 431 14 348 1.80e-158 453
MS.gene062739.t1 AT1G47610 23.770 244 142 6 226 439 29 258 8.84e-11 63.9
MS.gene062739.t1 AT1G24130 42.350 366 180 9 91 431 51 410 7.45e-84 265
MS.gene062739.t1 AT5G50120 40.682 381 185 11 86 431 10 384 2.80e-83 262
MS.gene062739.t1 AT3G51930 40.169 356 186 9 110 446 62 409 1.60e-77 248
MS.gene062739.t1 AT1G24530 43.522 301 156 7 136 432 114 404 5.73e-75 241
MS.gene062739.t1 AT3G49660 28.000 225 131 9 216 430 110 313 5.14e-17 82.4
MS.gene062739.t1 AT5G49200 26.201 229 139 6 148 376 213 411 1.52e-14 75.9
MS.gene062739.t1 AT5G49200 27.477 222 133 7 218 434 130 328 1.86e-11 66.2
MS.gene062739.t1 AT3G49180 27.273 209 123 6 215 401 116 317 4.89e-14 74.3
MS.gene062739.t1 AT2G43770 25.967 181 120 5 218 392 95 267 2.55e-13 71.6
MS.gene062739.t1 AT4G25440 23.843 281 186 10 114 377 151 420 3.19e-13 71.6
MS.gene062739.t1 AT4G25440 26.316 228 140 8 218 442 143 345 3.16e-12 68.6
MS.gene062739.t1 AT4G25440 23.843 281 186 10 114 377 151 420 3.19e-13 71.6
MS.gene062739.t1 AT4G25440 26.316 228 140 8 218 442 143 345 3.16e-12 68.6
MS.gene062739.t1 AT4G25440 23.843 281 186 10 114 377 151 420 3.19e-13 71.6
MS.gene062739.t1 AT4G25440 26.316 228 140 8 218 442 143 345 3.16e-12 68.6
MS.gene062739.t1 AT5G51980 23.297 279 190 10 114 377 158 427 5.74e-13 70.9
MS.gene062739.t1 AT5G51980 28.571 224 132 8 218 438 150 348 8.13e-13 70.5
MS.gene062739.t1 AT5G51980 23.297 279 190 10 114 377 158 427 5.74e-13 70.9
MS.gene062739.t1 AT5G51980 28.571 224 132 8 218 438 150 348 8.13e-13 70.5
MS.gene062739.t1 AT3G18130 24.252 301 176 9 120 376 29 321 8.85e-13 69.7
MS.gene062739.t1 AT4G02730 25.000 224 135 10 218 429 127 329 9.02e-13 69.7
MS.gene062739.t1 AT1G48630 24.585 301 175 9 120 376 29 321 2.23e-12 68.6
MS.gene062739.t1 AT5G08390 24.454 229 149 8 208 431 5 214 2.23e-12 70.1
MS.gene062739.t1 AT1G61210 24.348 230 148 8 208 431 4 213 3.87e-12 69.3
MS.gene062739.t1 AT1G61210 24.348 230 148 8 208 431 4 213 4.81e-12 68.9
MS.gene062739.t1 AT5G52820 23.380 355 196 11 114 431 116 431 4.88e-12 68.2
MS.gene062739.t1 AT1G61210 24.348 230 148 8 208 431 4 213 5.62e-12 68.9
MS.gene062739.t1 AT3G18140 29.130 230 137 10 218 438 77 289 6.67e-12 66.6
MS.gene062739.t1 AT5G40880 25.862 232 135 7 148 376 238 435 1.45e-11 66.6
MS.gene062739.t1 AT2G22040 24.351 308 192 14 162 444 15 306 1.48e-11 65.9
MS.gene062739.t1 AT5G40880 25.862 232 135 7 148 376 267 464 1.73e-11 66.6
MS.gene062739.t1 AT5G23430 24.017 229 150 8 208 431 5 214 1.76e-11 67.0
MS.gene062739.t1 AT5G23430 24.017 229 150 8 208 431 5 214 1.77e-11 67.0
MS.gene062739.t1 AT5G23430 24.017 229 150 8 208 431 5 214 1.77e-11 67.0
MS.gene062739.t1 AT1G11160 23.478 230 150 8 208 431 4 213 3.24e-11 66.2
MS.gene062739.t1 AT1G11160 23.478 230 150 8 208 431 4 213 3.50e-11 66.2
MS.gene062739.t1 AT1G11160 23.478 230 150 8 208 431 4 213 3.54e-11 66.2
MS.gene062739.t1 AT1G15440 27.803 223 138 7 218 435 348 552 4.59e-11 65.9
MS.gene062739.t1 AT1G21650 23.488 281 169 10 110 380 522 766 6.43e-11 65.5
MS.gene062739.t1 AT3G21540 28.313 166 109 5 216 378 537 695 6.94e-11 65.1
MS.gene062739.t1 AT5G50230 24.199 281 168 14 141 398 228 486 7.12e-11 64.7
MS.gene062739.t1 AT1G15440 27.803 223 138 7 218 435 388 592 7.75e-11 65.1
MS.gene062739.t1 AT1G18080 23.529 306 177 11 118 376 27 322 7.79e-11 63.9

Find 117 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGCTTCTGCTGGGAATT+TGG 0.194944 1.4:+2839351 MS.gene062739:CDS
CTGATGGATTGGTTAACTTT+TGG 0.209928 1.4:+2839266 MS.gene062739:CDS
TAATTAGTTTCTCTTATTAC+TGG 0.260421 1.4:-2839674 None:intergenic
GATATTGTATAGTGGGAGTT+TGG 0.285081 1.4:+2839528 MS.gene062739:CDS
GGTGACCAGTGAAGATCTTT+TGG 0.314403 1.4:-2838754 None:intergenic
CTCCACTGCTAAACATTTAA+CGG 0.343230 1.4:-2839467 None:intergenic
GAAAACACCGAACTGCATTA+TGG 0.359622 1.4:+2838906 MS.gene062739:CDS
CCTATCTCTACTCCGCTTCA+TGG 0.364291 1.4:+2838978 MS.gene062739:CDS
AGGCTTCTGTTGTGGAAAAT+CGG 0.365541 1.4:-2838087 None:intergenic
GGGACAGAACCGTCAAAGTT+TGG 0.366588 1.4:+2838999 MS.gene062739:CDS
GGCTTCTGTTGTGGAAAATC+GGG 0.370681 1.4:-2838086 None:intergenic
TAGTGGGAGTTTGGATAAAT+CGG 0.379605 1.4:+2839537 MS.gene062739:CDS
TGGATAAATCGGTTAAGGTT+TGG 0.407945 1.4:+2839548 MS.gene062739:CDS
GGCGGCGCTGCTGCTTCGCA+TGG 0.410803 1.4:-2838128 None:intergenic
GGTTAAGGTTTGGAGTGTTT+CGG 0.415090 1.4:+2839558 MS.gene062739:CDS
AATTGACAGCACAGGTTCAA+TGG 0.416389 1.4:+2839228 MS.gene062739:CDS
GAGTTTGGATAAATCGGTTA+AGG 0.419046 1.4:+2839543 MS.gene062739:CDS
TTGAAAATGTCTTTGAGAGT+TGG 0.425960 1.4:-2838848 None:intergenic
AGAAAAGAGGACATCATGTT+TGG 0.428247 1.4:+2837983 None:intergenic
ATTTATTCTTTAGCCGCTTC+CGG 0.433918 1.4:+2838617 MS.gene062739:CDS
GAATTTGTTGTTTGATTCCA+TGG 0.435201 1.4:-2838506 None:intergenic
TGCTTTCACCAATCCGCTGT+TGG 0.442701 1.4:-2838717 None:intergenic
CCAGCACGTTTGTGAACACT+AGG 0.447862 1.4:-2838818 None:intergenic
GGCATAGTCATCGTCGGTAT+AGG 0.452886 1.4:-2838107 None:intergenic
CTGCCGGGGTCGTAGTAGTA+AGG 0.461023 1.4:-2838163 None:intergenic
GGCGATTCTCCAAACTTTGA+CGG 0.461584 1.4:-2839008 None:intergenic
GTTTATTGTGGTGCTTCTGA+TGG 0.463697 1.4:+2839250 MS.gene062739:CDS
TCCACTGCTAAACATTTAAC+GGG 0.465640 1.4:-2839466 None:intergenic
GTCGTAGTAGTAAGGGCTCA+TGG 0.469102 1.4:-2838155 None:intergenic
TTGTGGTGCTTCTGATGGAT+TGG 0.469946 1.4:+2839255 MS.gene062739:CDS
AAGACGGTAAAATCCGTGTT+TGG 0.471026 1.4:+2838777 MS.gene062739:CDS
CCATGAAGCGGAGTAGAGAT+AGG 0.474781 1.4:-2838978 None:intergenic
CAACGGTGGATATTGTATAG+TGG 0.476176 1.4:+2839520 MS.gene062739:CDS
CAGCGTTAACTGCGTCCTCA+TGG 0.479785 1.4:-2839060 None:intergenic
GCAGTTAACGCTGTCGTTTG+TGG 0.482135 1.4:+2839070 MS.gene062739:CDS
TAGCAGTTATTCTTCAAGTC+GGG 0.487480 1.4:+2839651 MS.gene062739:CDS
CCTCCACAGAATTCACTAAT+CGG 0.488284 1.4:+2838569 MS.gene062739:CDS
TTCCATGGTGACATCATCAT+TGG 0.492726 1.4:-2838491 None:intergenic
GGATTCCAAGCACTTTGAAT+CGG 0.494485 1.4:-2839029 None:intergenic
TCGTAGTAGTAAGGGCTCAT+GGG 0.499362 1.4:-2838154 None:intergenic
TAAATGTTTAGCAGTGGAGC+AGG 0.501256 1.4:+2839471 MS.gene062739:CDS
ATTTCGGAATTCAGATTAAG+TGG 0.505622 1.4:+2838458 MS.gene062739:intron
ATGTTTGGCAGCAACAGAAA+TGG 0.507504 1.4:+2837998 MS.gene062739:CDS
GACCATTGTGGCTTTGAGAA+TGG 0.507721 1.4:-2838530 None:intergenic
AATCGCCGATTCAAAGTGCT+TGG 0.510834 1.4:+2839024 MS.gene062739:CDS
CACTTTAACTGTTCCGTCTG+CGG 0.512345 1.4:-2839119 None:intergenic
AATAAATGTGACCCTCTTCG+CGG 0.519114 1.4:-2838601 None:intergenic
CGAACCTCGACATAATTGCT+TGG 0.519441 1.4:-2838884 None:intergenic
GACGGTTCTGTCCCATGAAG+CGG 0.520394 1.4:-2838990 None:intergenic
TGCGTCCTCATGGGAAGTAA+TGG 0.522213 1.4:-2839050 None:intergenic
GAGTGTTTCGGAGAGTATGC+AGG 0.525774 1.4:+2839570 MS.gene062739:CDS
TCCGGCCAAAAGATCTTCAC+TGG 0.528849 1.4:+2838749 MS.gene062739:CDS
GAATTCACTAATCGGTTCAC+TGG 0.529725 1.4:+2838577 MS.gene062739:CDS
TGAAGCGGACTCGATACCTT+CGG 0.529765 1.4:+2839621 MS.gene062739:CDS
CTATCTCTACTCCGCTTCAT+GGG 0.530420 1.4:+2838979 MS.gene062739:CDS
GGTTCACTGGTCCGCGAAGA+GGG 0.531067 1.4:+2838590 MS.gene062739:CDS
AACGGTGGATATTGTATAGT+GGG 0.531227 1.4:+2839521 MS.gene062739:CDS
GTATAATAAGTCACCGGAAG+CGG 0.536150 1.4:-2838630 None:intergenic
GTTTGATCCATAATGCAGTT+CGG 0.536393 1.4:-2838913 None:intergenic
TGAACATGGTGGGGTCCTCA+AGG 0.536617 1.4:+2839306 MS.gene062739:CDS
ATAAGCAATTTGAACATGGT+GGG 0.539684 1.4:+2839296 MS.gene062739:CDS
AACAGAAATGGTAGCAGCAA+TGG 0.541943 1.4:+2838010 MS.gene062739:CDS
ACTTGAAGAATAACTGCTAT+CGG 0.549184 1.4:-2839647 None:intergenic
ATTCAAATCCAACAGCGGAT+TGG 0.555985 1.4:+2838709 MS.gene062739:CDS
CGTAGTAGTAAGGGCTCATG+GGG 0.557738 1.4:-2838153 None:intergenic
AGCGTTAACTGCGTCCTCAT+GGG 0.560203 1.4:-2839059 None:intergenic
TCCGGTGACTTATTATACAC+TGG 0.561865 1.4:+2838635 MS.gene062739:CDS
CCTAGTGTTCACAAACGTGC+TGG 0.563233 1.4:+2838818 MS.gene062739:CDS
GTGAAAGCAATCATAATCTC+CGG 0.564651 1.4:+2838731 MS.gene062739:CDS
GACTTCTATGACTTCTGAAG+CGG 0.565569 1.4:+2839606 MS.gene062739:CDS
CAGAAGTCATAGAAGTCATA+CGG 0.569108 1.4:-2839600 None:intergenic
GCTTTAGCAATTGACAGCAC+AGG 0.572390 1.4:+2839220 MS.gene062739:CDS
GAATTCAGATTAAGTGGTGA+GGG 0.574833 1.4:+2838464 MS.gene062739:intron
ACAGGTTCAATGGTTTATTG+TGG 0.574899 1.4:+2839238 MS.gene062739:CDS
TAAAACAACAAAACATGCAA+TGG 0.575977 1.4:+2839162 MS.gene062739:CDS
CGGTTCACTGGTCCGCGAAG+AGG 0.577185 1.4:+2838589 MS.gene062739:CDS
GATTGCATGAACTGTGGACG+AGG 0.578526 1.4:-2838058 None:intergenic
GTCGGTATAGGCTTCTGTTG+TGG 0.580739 1.4:-2838095 None:intergenic
TCCCGTTAAATGTTTAGCAG+TGG 0.585347 1.4:+2839465 MS.gene062739:CDS
GAACATGGTGGGGTCCTCAA+GGG 0.590913 1.4:+2839307 MS.gene062739:CDS
ATAGCAGTTATTCTTCAAGT+CGG 0.598933 1.4:+2839650 MS.gene062739:CDS
ATCTTCACTGGTCACCAAGA+CGG 0.606747 1.4:+2838761 MS.gene062739:CDS
GCCAGTGTATAATAAGTCAC+CGG 0.607754 1.4:-2838636 None:intergenic
AAGAATCTTCAAGAATATTG+CGG 0.611703 1.4:+2838686 MS.gene062739:CDS
CGTGATAAGCAATTTGAACA+TGG 0.614622 1.4:+2839292 MS.gene062739:CDS
TGAGAGAAACTTTCCAAACA+CGG 0.617451 1.4:-2838790 None:intergenic
GGAATTCAGATTAAGTGGTG+AGG 0.618381 1.4:+2838463 MS.gene062739:intron
CTTACTACTACGACCCCGGC+AGG 0.625720 1.4:+2838164 MS.gene062739:CDS
TCTTCATGTTGTGACCATTG+TGG 0.628476 1.4:-2838542 None:intergenic
TAAGCAATTTGAACATGGTG+GGG 0.630149 1.4:+2839297 MS.gene062739:CDS
TAAACCAAGCAATTATGTCG+AGG 0.630261 1.4:+2838880 MS.gene062739:CDS
ACGCTAGAGGCGATCAACGG+TGG 0.631359 1.4:+2839506 MS.gene062739:CDS
TGCCGGGGTCGTAGTAGTAA+GGG 0.633486 1.4:-2838162 None:intergenic
GATAAGCAATTTGAACATGG+TGG 0.635398 1.4:+2839295 MS.gene062739:CDS
ATATGTGTGTGGAAAAGAGA+CGG 0.638236 1.4:+2839400 MS.gene062739:CDS
GTGACGCTAGAGGCGATCAA+CGG 0.644346 1.4:+2839503 MS.gene062739:CDS
GAACTGTGGACGAGGTATGT+TGG 0.644937 1.4:-2838050 None:intergenic
CTGATAAAACTATATGTGTG+TGG 0.648294 1.4:+2839389 MS.gene062739:CDS
CACCATTCTCAAAGCCACAA+TGG 0.648605 1.4:+2838528 MS.gene062739:CDS
GCTTCTGTTGTGGAAAATCG+GGG 0.650013 1.4:-2838085 None:intergenic
CAGCACGTTTGTGAACACTA+GGG 0.651977 1.4:-2838817 None:intergenic
GCTGTCGTTTGTGGAAATGA+CGG 0.653068 1.4:+2839079 MS.gene062739:CDS
CACCAATGATGATGTCACCA+TGG 0.656028 1.4:+2838489 MS.gene062739:CDS
TCGCATGGCATAGTCATCGT+CGG 0.657109 1.4:-2838113 None:intergenic
GATCGCGAATGTGACGCTAG+AGG 0.658722 1.4:+2839493 MS.gene062739:CDS
GGTTCAGATTGCATGAACTG+TGG 0.659555 1.4:-2838064 None:intergenic
AGCCCTTACTACTACGACCC+CGG 0.660537 1.4:+2838160 MS.gene062739:CDS
GAACCGATTAGTGAATTCTG+TGG 0.660596 1.4:-2838572 None:intergenic
TGCGGATTCAAATCCAACAG+CGG 0.666577 1.4:+2838704 MS.gene062739:CDS
CAGACGGAACAGTTAAAGTG+TGG 0.670124 1.4:+2839122 MS.gene062739:CDS
ACAGCAAGAACATTCGTGTG+TGG 0.678557 1.4:+2838663 MS.gene062739:CDS
CTGCAAGCTTATGACCCTTG+AGG 0.683943 1.4:-2839321 None:intergenic
GGAATCCATTACTTCCCATG+AGG 0.695900 1.4:+2839045 MS.gene062739:CDS
CCGATTAGTGAATTCTGTGG+AGG 0.708658 1.4:-2838569 None:intergenic
TAACTGCTATCGGATTCCGA+AGG 0.748944 1.4:-2839637 None:intergenic
GTGTGGCGAAGAGAAGCACG+TGG 0.779519 1.4:+2839139 MS.gene062739:CDS
GTAGTAGTAAGGGCTCATGG+GGG 0.834324 1.4:-2838152 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAAGAAAATGAAAA+AGG - chr1.4:2838195-2838214 None:intergenic 10.0%
!!! AATAACATTTTATTTAGATT+TGG - chr1.4:2838394-2838413 None:intergenic 10.0%
!!! CTTATAGTTAATTTGAATTT+CGG + chr1.4:2838442-2838461 MS.gene062739:intron 15.0%
!! CAAATTCAATTTACATCAAA+CGG - chr1.4:2838327-2838346 None:intergenic 20.0%
! AAGAATCTTCAAGAATATTG+CGG + chr1.4:2838686-2838705 MS.gene062739:CDS 25.0%
! TAAAACAACAAAACATGCAA+TGG + chr1.4:2839162-2839181 MS.gene062739:CDS 25.0%
!! ATTGAATTTGAGTTCACAAT+CGG + chr1.4:2838337-2838356 MS.gene062739:intron 25.0%
ACTTGAAGAATAACTGCTAT+CGG - chr1.4:2839650-2839669 None:intergenic 30.0%
ATAAGCAATTTGAACATGGT+GGG + chr1.4:2839296-2839315 MS.gene062739:CDS 30.0%
ATAGCAGTTATTCTTCAAGT+CGG + chr1.4:2839650-2839669 MS.gene062739:CDS 30.0%
ATTTCGGAATTCAGATTAAG+TGG + chr1.4:2838458-2838477 MS.gene062739:intron 30.0%
CTGATAAAACTATATGTGTG+TGG + chr1.4:2839389-2839408 MS.gene062739:CDS 30.0%
! TTGAAAATGTCTTTGAGAGT+TGG - chr1.4:2838851-2838870 None:intergenic 30.0%
!! GAATTTGTTGTTTGATTCCA+TGG - chr1.4:2838509-2838528 None:intergenic 30.0%
!!! TGATGGATTGGTTAACTTTT+GGG + chr1.4:2839267-2839286 MS.gene062739:CDS 30.0%
AACGGTGGATATTGTATAGT+GGG + chr1.4:2839521-2839540 MS.gene062739:CDS 35.0%
ACAGGTTCAATGGTTTATTG+TGG + chr1.4:2839238-2839257 MS.gene062739:CDS 35.0%
ATATGTGTGTGGAAAAGAGA+CGG + chr1.4:2839400-2839419 MS.gene062739:CDS 35.0%
ATTTATTCTTTAGCCGCTTC+CGG + chr1.4:2838617-2838636 MS.gene062739:CDS 35.0%
CAGAAGTCATAGAAGTCATA+CGG - chr1.4:2839603-2839622 None:intergenic 35.0%
CGTGATAAGCAATTTGAACA+TGG + chr1.4:2839292-2839311 MS.gene062739:CDS 35.0%
CTCCACTGCTAAACATTTAA+CGG - chr1.4:2839470-2839489 None:intergenic 35.0%
GAATTCAGATTAAGTGGTGA+GGG + chr1.4:2838464-2838483 MS.gene062739:intron 35.0%
GAGTTTGGATAAATCGGTTA+AGG + chr1.4:2839543-2839562 MS.gene062739:CDS 35.0%
GATAAGCAATTTGAACATGG+TGG + chr1.4:2839295-2839314 MS.gene062739:CDS 35.0%
GTGAAAGCAATCATAATCTC+CGG + chr1.4:2838731-2838750 MS.gene062739:CDS 35.0%
GTTTGATCCATAATGCAGTT+CGG - chr1.4:2838916-2838935 None:intergenic 35.0%
TAAACCAAGCAATTATGTCG+AGG + chr1.4:2838880-2838899 MS.gene062739:CDS 35.0%
TAAGCAATTTGAACATGGTG+GGG + chr1.4:2839297-2839316 MS.gene062739:CDS 35.0%
TAGCAGTTATTCTTCAAGTC+GGG + chr1.4:2839651-2839670 MS.gene062739:CDS 35.0%
TAGTGGGAGTTTGGATAAAT+CGG + chr1.4:2839537-2839556 MS.gene062739:CDS 35.0%
TCCACTGCTAAACATTTAAC+GGG - chr1.4:2839469-2839488 None:intergenic 35.0%
TGAGAGAAACTTTCCAAACA+CGG - chr1.4:2838793-2838812 None:intergenic 35.0%
TGGATAAATCGGTTAAGGTT+TGG + chr1.4:2839548-2839567 MS.gene062739:CDS 35.0%
TTAGATTTGGATTCTCTGCA+TGG - chr1.4:2838381-2838400 None:intergenic 35.0%
TTGGATTCTTTGCATGAACA+TGG + chr1.4:2838284-2838303 MS.gene062739:intron 35.0%
! GATATTGTATAGTGGGAGTT+TGG + chr1.4:2839528-2839547 MS.gene062739:CDS 35.0%
!! AATGACGGAATTGTTTTCTC+TGG + chr1.4:2839094-2839113 MS.gene062739:CDS 35.0%
!! CACGTGTATGTCTGTTTTAA+CGG + chr1.4:2839432-2839451 MS.gene062739:CDS 35.0%
!! TTTTGTGTTTAGCTTCTGCT+GGG + chr1.4:2839344-2839363 MS.gene062739:CDS 35.0%
!!! ACGTGTATGTCTGTTTTAAC+GGG + chr1.4:2839433-2839452 MS.gene062739:CDS 35.0%
!!! CTGATGGATTGGTTAACTTT+TGG + chr1.4:2839266-2839285 MS.gene062739:CDS 35.0%
AACAGAAATGGTAGCAGCAA+TGG + chr1.4:2838010-2838029 MS.gene062739:CDS 40.0%
AAGACGGTAAAATCCGTGTT+TGG + chr1.4:2838777-2838796 MS.gene062739:CDS 40.0%
AATAAATGTGACCCTCTTCG+CGG - chr1.4:2838604-2838623 None:intergenic 40.0%
AATTGACAGCACAGGTTCAA+TGG + chr1.4:2839228-2839247 MS.gene062739:CDS 40.0%
AGGCTTCTGTTGTGGAAAAT+CGG - chr1.4:2838090-2838109 None:intergenic 40.0%
ATGTTTGGCAGCAACAGAAA+TGG + chr1.4:2837998-2838017 MS.gene062739:CDS 40.0%
ATTCAAATCCAACAGCGGAT+TGG + chr1.4:2838709-2838728 MS.gene062739:CDS 40.0%
CAACGGTGGATATTGTATAG+TGG + chr1.4:2839520-2839539 MS.gene062739:CDS 40.0%
CCTCCACAGAATTCACTAAT+CGG + chr1.4:2838569-2838588 MS.gene062739:CDS 40.0%
GAAAACACCGAACTGCATTA+TGG + chr1.4:2838906-2838925 MS.gene062739:CDS 40.0%
GAACCGATTAGTGAATTCTG+TGG - chr1.4:2838575-2838594 None:intergenic 40.0%
GCCAGTGTATAATAAGTCAC+CGG - chr1.4:2838639-2838658 None:intergenic 40.0%
GGAATTCAGATTAAGTGGTG+AGG + chr1.4:2838463-2838482 MS.gene062739:intron 40.0%
GGATTCCAAGCACTTTGAAT+CGG - chr1.4:2839032-2839051 None:intergenic 40.0%
GTATAATAAGTCACCGGAAG+CGG - chr1.4:2838633-2838652 None:intergenic 40.0%
GTTTATTGTGGTGCTTCTGA+TGG + chr1.4:2839250-2839269 MS.gene062739:CDS 40.0%
TAAATGTTTAGCAGTGGAGC+AGG + chr1.4:2839471-2839490 MS.gene062739:CDS 40.0%
TCCCGTTAAATGTTTAGCAG+TGG + chr1.4:2839465-2839484 MS.gene062739:CDS 40.0%
TCCGGTGACTTATTATACAC+TGG + chr1.4:2838635-2838654 MS.gene062739:CDS 40.0%
TCTTCATGTTGTGACCATTG+TGG - chr1.4:2838545-2838564 None:intergenic 40.0%
TTCCATGGTGACATCATCAT+TGG - chr1.4:2838494-2838513 None:intergenic 40.0%
! AAACACGGATTTTACCGTCT+TGG - chr1.4:2838778-2838797 None:intergenic 40.0%
! GAATTCACTAATCGGTTCAC+TGG + chr1.4:2838577-2838596 MS.gene062739:CDS 40.0%
! GACTTCTATGACTTCTGAAG+CGG + chr1.4:2839606-2839625 MS.gene062739:CDS 40.0%
! GGTTAAGGTTTGGAGTGTTT+CGG + chr1.4:2839558-2839577 MS.gene062739:CDS 40.0%
! TTTAGCTTCTGCTGGGAATT+TGG + chr1.4:2839351-2839370 MS.gene062739:CDS 40.0%
! TTTTGTCTGGAGAGAGACTT+AGG - chr1.4:2838958-2838977 None:intergenic 40.0%
!! GAGTAGAGATAGGTTTTGTC+TGG - chr1.4:2838971-2838990 None:intergenic 40.0%
!! GTTTTGTGTTTAGCTTCTGC+TGG + chr1.4:2839343-2839362 MS.gene062739:CDS 40.0%
!!! GCTGGGAATTTGGTTTTTAG+TGG + chr1.4:2839361-2839380 MS.gene062739:CDS 40.0%
ACAGCAAGAACATTCGTGTG+TGG + chr1.4:2838663-2838682 MS.gene062739:CDS 45.0%
ATCTTCACTGGTCACCAAGA+CGG + chr1.4:2838761-2838780 MS.gene062739:CDS 45.0%
ATGAAAAAGGAGAGACCTGC+CGG - chr1.4:2838182-2838201 None:intergenic 45.0%
CACCATTCTCAAAGCCACAA+TGG + chr1.4:2838528-2838547 MS.gene062739:CDS 45.0%
CACTTTAACTGTTCCGTCTG+CGG - chr1.4:2839122-2839141 None:intergenic 45.0%
CAGACGGAACAGTTAAAGTG+TGG + chr1.4:2839122-2839141 MS.gene062739:CDS 45.0%
CAGCACGTTTGTGAACACTA+GGG - chr1.4:2838820-2838839 None:intergenic 45.0%
CCAAATAGCTCGTCTAGCTA+AGG - chr1.4:2838268-2838287 None:intergenic 45.0%
CCGATTAGTGAATTCTGTGG+AGG - chr1.4:2838572-2838591 None:intergenic 45.0%
CCTTAGCTAGACGAGCTATT+TGG + chr1.4:2838265-2838284 MS.gene062739:intron 45.0%
CGAACCTCGACATAATTGCT+TGG - chr1.4:2838887-2838906 None:intergenic 45.0%
CTATCTCTACTCCGCTTCAT+GGG + chr1.4:2838979-2838998 MS.gene062739:CDS 45.0%
GCTTCTGTTGTGGAAAATCG+GGG - chr1.4:2838088-2838107 None:intergenic 45.0%
GCTTTAGCAATTGACAGCAC+AGG + chr1.4:2839220-2839239 MS.gene062739:CDS 45.0%
GGAATCCATTACTTCCCATG+AGG + chr1.4:2839045-2839064 MS.gene062739:CDS 45.0%
GGCGATTCTCCAAACTTTGA+CGG - chr1.4:2839011-2839030 None:intergenic 45.0%
GGCTTCTGTTGTGGAAAATC+GGG - chr1.4:2838089-2838108 None:intergenic 45.0%
GGTTCAGATTGCATGAACTG+TGG - chr1.4:2838067-2838086 None:intergenic 45.0%
TAACTGCTATCGGATTCCGA+AGG - chr1.4:2839640-2839659 None:intergenic 45.0%
TCGTAGTAGTAAGGGCTCAT+GGG - chr1.4:2838157-2838176 None:intergenic 45.0%
TGCGGATTCAAATCCAACAG+CGG + chr1.4:2838704-2838723 MS.gene062739:CDS 45.0%
! ACCAGTGAAGATCTTTTGGC+CGG - chr1.4:2838753-2838772 None:intergenic 45.0%
! CACCAATGATGATGTCACCA+TGG + chr1.4:2838489-2838508 MS.gene062739:CDS 45.0%
! GCTGTCGTTTGTGGAAATGA+CGG + chr1.4:2839079-2839098 MS.gene062739:CDS 45.0%
! GGTGACCAGTGAAGATCTTT+TGG - chr1.4:2838757-2838776 None:intergenic 45.0%
! TTGTGGTGCTTCTGATGGAT+TGG + chr1.4:2839255-2839274 MS.gene062739:CDS 45.0%
!! AATCGCCGATTCAAAGTGCT+TGG + chr1.4:2839024-2839043 MS.gene062739:CDS 45.0%
!! GACCATTGTGGCTTTGAGAA+TGG - chr1.4:2838533-2838552 None:intergenic 45.0%
!!! TCTGTTTTAACGGGACACGA+TGG + chr1.4:2839442-2839461 MS.gene062739:CDS 45.0%
AGCGTTAACTGCGTCCTCAT+GGG - chr1.4:2839062-2839081 None:intergenic 50.0%
CCAGCACGTTTGTGAACACT+AGG - chr1.4:2838821-2838840 None:intergenic 50.0%
CCATGAAGCGGAGTAGAGAT+AGG - chr1.4:2838981-2839000 None:intergenic 50.0%
CCTAGTGTTCACAAACGTGC+TGG + chr1.4:2838818-2838837 MS.gene062739:CDS 50.0%
CCTATCTCTACTCCGCTTCA+TGG + chr1.4:2838978-2838997 MS.gene062739:CDS 50.0%
CGTAGTAGTAAGGGCTCATG+GGG - chr1.4:2838156-2838175 None:intergenic 50.0%
CTGCAAGCTTATGACCCTTG+AGG - chr1.4:2839324-2839343 None:intergenic 50.0%
GAACTGTGGACGAGGTATGT+TGG - chr1.4:2838053-2838072 None:intergenic 50.0%
GATTGCATGAACTGTGGACG+AGG - chr1.4:2838061-2838080 None:intergenic 50.0%
GGCATAGTCATCGTCGGTAT+AGG - chr1.4:2838110-2838129 None:intergenic 50.0%
GGGACAGAACCGTCAAAGTT+TGG + chr1.4:2838999-2839018 MS.gene062739:CDS 50.0%
GTAGTAGTAAGGGCTCATGG+GGG - chr1.4:2838155-2838174 None:intergenic 50.0%
GTCGGTATAGGCTTCTGTTG+TGG - chr1.4:2838098-2838117 None:intergenic 50.0%
GTCGTAGTAGTAAGGGCTCA+TGG - chr1.4:2838158-2838177 None:intergenic 50.0%
TCCGGCCAAAAGATCTTCAC+TGG + chr1.4:2838749-2838768 MS.gene062739:CDS 50.0%
TCGCATGGCATAGTCATCGT+CGG - chr1.4:2838116-2838135 None:intergenic 50.0%
TGAAAAAGGAGAGACCTGCC+GGG - chr1.4:2838181-2838200 None:intergenic 50.0%
TGCGTCCTCATGGGAAGTAA+TGG - chr1.4:2839053-2839072 None:intergenic 50.0%
TGCTTTCACCAATCCGCTGT+TGG - chr1.4:2838720-2838739 None:intergenic 50.0%
! GAGTGTTTCGGAGAGTATGC+AGG + chr1.4:2839570-2839589 MS.gene062739:CDS 50.0%
! GCAGTTAACGCTGTCGTTTG+TGG + chr1.4:2839070-2839089 MS.gene062739:CDS 50.0%
! TGAAGCGGACTCGATACCTT+CGG + chr1.4:2839621-2839640 MS.gene062739:CDS 50.0%
!! GTTTTCTCTGGTTCCGCAGA+CGG + chr1.4:2839106-2839125 MS.gene062739:CDS 50.0%
AGCCCTTACTACTACGACCC+CGG + chr1.4:2838160-2838179 MS.gene062739:CDS 55.0%
CAGCGTTAACTGCGTCCTCA+TGG - chr1.4:2839063-2839082 None:intergenic 55.0%
GAAAAAGGAGAGACCTGCCG+GGG - chr1.4:2838180-2838199 None:intergenic 55.0%
GACGGTTCTGTCCCATGAAG+CGG - chr1.4:2838993-2839012 None:intergenic 55.0%
GATCGCGAATGTGACGCTAG+AGG + chr1.4:2839493-2839512 MS.gene062739:CDS 55.0%
GTGACGCTAGAGGCGATCAA+CGG + chr1.4:2839503-2839522 MS.gene062739:CDS 55.0%
TGCCGGGGTCGTAGTAGTAA+GGG - chr1.4:2838165-2838184 None:intergenic 55.0%
! GAACATGGTGGGGTCCTCAA+GGG + chr1.4:2839307-2839326 MS.gene062739:CDS 55.0%
! TGAACATGGTGGGGTCCTCA+AGG + chr1.4:2839306-2839325 MS.gene062739:CDS 55.0%
ACGCTAGAGGCGATCAACGG+TGG + chr1.4:2839506-2839525 MS.gene062739:CDS 60.0%
CTGCCGGGGTCGTAGTAGTA+AGG - chr1.4:2838166-2838185 None:intergenic 60.0%
CTTACTACTACGACCCCGGC+AGG + chr1.4:2838164-2838183 MS.gene062739:CDS 60.0%
GGTTCACTGGTCCGCGAAGA+GGG + chr1.4:2838590-2838609 MS.gene062739:CDS 60.0%
GTAGTAAGGGCTCATGGGGG+AGG - chr1.4:2838152-2838171 None:intergenic 60.0%
! GTGTGGCGAAGAGAAGCACG+TGG + chr1.4:2839139-2839158 MS.gene062739:CDS 60.0%
CGGTTCACTGGTCCGCGAAG+AGG + chr1.4:2838589-2838608 MS.gene062739:CDS 65.0%
GTAAGGGCTCATGGGGGAGG+CGG - chr1.4:2838149-2838168 None:intergenic 65.0%
! GGCGGCGCTGCTGCTTCGCA+TGG - chr1.4:2838131-2838150 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 2837998 2839693 2837998 ID=MS.gene062739
chr1.4 mRNA 2837998 2839693 2837998 ID=MS.gene062739.t1;Parent=MS.gene062739
chr1.4 exon 2837998 2838185 2837998 ID=MS.gene062739.t1.exon1;Parent=MS.gene062739.t1
chr1.4 CDS 2837998 2838185 2837998 ID=cds.MS.gene062739.t1;Parent=MS.gene062739.t1
chr1.4 exon 2838472 2839693 2838472 ID=MS.gene062739.t1.exon2;Parent=MS.gene062739.t1
chr1.4 CDS 2838472 2839693 2838472 ID=cds.MS.gene062739.t1;Parent=MS.gene062739.t1
Gene Sequence

>MS.gene062739

ATGTTTGGCAGCAACAGAAATGGTAGCAGCAATGGCAGTAGCAACAACAACACCAACATACCTCGTCCACAGTTCATGCAATCTGAACCCCGATTTTCCACAACAGAAGCCTATACCGACGATGACTATGCCATGCGAAGCAGCAGCGCCGCCTCCCCCATGAGCCCTTACTACTACGACCCCGGCAGGTCTCTCCTTTTTCATTTTCTTTATTTATTTTACATAAGTTAGTGAATACGTCAAAGTTCTTTATTTATGTTCGATGATCCTTAGCTAGACGAGCTATTTGGATTCTTTGCATGAACATGGTGCAGTTCACTGTAGAACCGTTTGATGTAAATTGAATTTGAGTTCACAATCGGCTCTGCAATGCTGCTGCACCATGCAGAGAATCCAAATCTAAATAAAATGTTATTATTGTAATCTAAATTTAATCGTTGCTAACTTATAGTTAATTTGAATTTCGGAATTCAGATTAAGTGGTGAGGGCTCACCAATGATGATGTCACCATGGAATCAAACAACAAATTCACCATTCTCAAAGCCACAATGGTCACAACATGAAGACACACCTCCACAGAATTCACTAATCGGTTCACTGGTCCGCGAAGAGGGTCACATTTATTCTTTAGCCGCTTCCGGTGACTTATTATACACTGGCTCAGACAGCAAGAACATTCGTGTGTGGAAGAATCTTCAAGAATATTGCGGATTCAAATCCAACAGCGGATTGGTGAAAGCAATCATAATCTCCGGCCAAAAGATCTTCACTGGTCACCAAGACGGTAAAATCCGTGTTTGGAAAGTTTCTCTCAAGAACCCTAGTGTTCACAAACGTGCTGGAACATTGCCAACTCTCAAAGACATTTTCAAAAGCTCGATTAAACCAAGCAATTATGTCGAGGTTCGAAAACACCGAACTGCATTATGGATCAAACATTCTGATGCAGTTTCATGCCTAAGTCTCTCTCCAGACAAAACCTATCTCTACTCCGCTTCATGGGACAGAACCGTCAAAGTTTGGAGAATCGCCGATTCAAAGTGCTTGGAATCCATTACTTCCCATGAGGACGCAGTTAACGCTGTCGTTTGTGGAAATGACGGAATTGTTTTCTCTGGTTCCGCAGACGGAACAGTTAAAGTGTGGCGAAGAGAAGCACGTGGTAAAACAACAAAACATGCAATGGTTAAACAACTTTTAAAACAAGAATGTGCAGTAACTGCTTTAGCAATTGACAGCACAGGTTCAATGGTTTATTGTGGTGCTTCTGATGGATTGGTTAACTTTTGGGAACGTGATAAGCAATTTGAACATGGTGGGGTCCTCAAGGGTCATAAGCTTGCAGTTTTGTGTTTAGCTTCTGCTGGGAATTTGGTTTTTAGTGGTTCAGCTGATAAAACTATATGTGTGTGGAAAAGAGACGGAGTTATTCACACGTGTATGTCTGTTTTAACGGGACACGATGGTCCCGTTAAATGTTTAGCAGTGGAGCAGGATCGCGAATGTGACGCTAGAGGCGATCAACGGTGGATATTGTATAGTGGGAGTTTGGATAAATCGGTTAAGGTTTGGAGTGTTTCGGAGAGTATGCAGGTACAACACCGTATGACTTCTATGACTTCTGAAGCGGACTCGATACCTTCGGAATCCGATAGCAGTTATTCTTCAAGTCGGGCCAGTAATAAGAGAAACTAA
Protein sequence

>MS.gene062739.t1

MFGSNRNGSSNGSSNNNTNIPRPQFMQSEPRFSTTEAYTDDDYAMRSSSAASPMSPYYYDPGRLSGEGSPMMMSPWNQTTNSPFSKPQWSQHEDTPPQNSLIGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLQEYCGFKSNSGLVKAIIISGQKIFTGHQDGKIRVWKVSLKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRKHRTALWIKHSDAVSCLSLSPDKTYLYSASWDRTVKVWRIADSKCLESITSHEDAVNAVVCGNDGIVFSGSADGTVKVWRREARGKTTKHAMVKQLLKQECAVTALAIDSTGSMVYCGASDGLVNFWERDKQFEHGGVLKGHKLAVLCLASAGNLVFSGSADKTICVWKRDGVIHTCMSVLTGHDGPVKCLAVEQDRECDARGDQRWILYSGSLDKSVKVWSVSESMQVQHRMTSMTSEADSIPSESDSSYSSSRASNKRN