AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24338

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24338.t1 MTR_1g021590 97.872 470 9 1 1 469 1 470 0.0 951
MS.gene24338.t1 MTR_5g018520 60.599 401 147 6 36 434 31 422 1.99e-175 500
MS.gene24338.t1 MTR_4g068457 58.108 444 155 8 20 433 16 458 1.75e-170 489
MS.gene24338.t1 MTR_3g078380 41.056 341 177 8 114 431 70 409 1.23e-76 246
MS.gene24338.t1 MTR_8g089650 41.026 351 186 9 112 447 100 444 1.43e-76 246
MS.gene24338.t1 MTR_2g060070 39.886 351 190 9 91 431 42 381 1.70e-76 245
MS.gene24338.t1 MTR_3g110185 41.176 340 179 9 102 431 81 409 2.18e-76 255
MS.gene24338.t1 MTR_5g035980 36.203 395 202 8 87 431 49 443 1.26e-75 244
MS.gene24338.t1 MTR_4g106480 40.833 360 180 12 98 431 44 396 5.34e-75 241
MS.gene24338.t1 MTR_4g104410 38.843 363 204 9 80 431 8 363 1.07e-74 239
MS.gene24338.t1 MTR_2g101410 36.243 378 197 14 81 432 49 408 2.04e-64 214
MS.gene24338.t1 MTR_8g028700 26.190 294 192 9 104 377 223 511 2.08e-19 91.3
MS.gene24338.t1 MTR_8g032850 26.182 275 177 10 120 377 631 896 1.76e-17 85.9
MS.gene24338.t1 MTR_4g119620 25.893 224 135 8 218 430 119 322 2.26e-14 74.3
MS.gene24338.t1 MTR_8g106790 25.828 302 169 12 120 376 29 320 3.06e-13 70.9
MS.gene24338.t1 MTR_7g086360 27.624 181 117 5 218 392 97 269 3.96e-13 70.9
MS.gene24338.t1 MTR_3g088545 27.477 222 102 9 233 451 99 264 7.97e-13 70.1
MS.gene24338.t1 MTR_6g465150 28.070 228 136 8 218 442 149 351 1.10e-12 70.1
MS.gene24338.t1 MTR_6g465150 24.746 295 189 12 105 377 143 426 3.48e-12 68.6
MS.gene24338.t1 MTR_7g016970 29.858 211 115 7 215 401 117 318 1.24e-12 70.1
MS.gene24338.t1 MTR_1g072140 28.994 169 100 6 218 376 110 268 1.36e-12 68.9
MS.gene24338.t1 MTR_4g123597 25.792 221 131 6 162 378 504 695 1.91e-12 70.1
MS.gene24338.t1 MTR_4g105700 26.866 268 154 11 120 352 418 678 2.45e-12 69.7
MS.gene24338.t1 MTR_1g034785 31.132 212 112 10 215 401 114 316 1.11e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24338.t1 AT2G26490 70.784 421 114 4 19 435 7 422 0.0 615
MS.gene24338.t1 AT4G34380 58.810 437 157 6 21 441 37 466 7.87e-174 497
MS.gene24338.t1 AT3G50390 60.354 396 133 7 58 434 37 427 9.24e-166 476
MS.gene24338.t1 AT3G18950 57.077 431 168 10 13 434 45 467 4.92e-165 474
MS.gene24338.t1 AT1G49450 58.750 400 144 7 53 433 71 468 7.65e-164 471
MS.gene24338.t1 AT1G47610 68.047 338 100 5 99 431 14 348 1.80e-158 453
MS.gene24338.t1 AT1G47610 23.770 244 142 6 226 439 29 258 8.84e-11 63.9
MS.gene24338.t1 AT1G24130 42.350 366 180 9 91 431 51 410 7.45e-84 265
MS.gene24338.t1 AT5G50120 40.682 381 185 11 86 431 10 384 2.80e-83 262
MS.gene24338.t1 AT3G51930 40.169 356 186 9 110 446 62 409 1.60e-77 248
MS.gene24338.t1 AT1G24530 43.522 301 156 7 136 432 114 404 5.73e-75 241
MS.gene24338.t1 AT3G49660 28.000 225 131 9 216 430 110 313 5.14e-17 82.4
MS.gene24338.t1 AT5G49200 26.201 229 139 6 148 376 213 411 1.52e-14 75.9
MS.gene24338.t1 AT5G49200 27.477 222 133 7 218 434 130 328 1.86e-11 66.2
MS.gene24338.t1 AT3G49180 27.273 209 123 6 215 401 116 317 4.89e-14 74.3
MS.gene24338.t1 AT2G43770 25.967 181 120 5 218 392 95 267 2.55e-13 71.6
MS.gene24338.t1 AT4G25440 23.843 281 186 10 114 377 151 420 3.19e-13 71.6
MS.gene24338.t1 AT4G25440 26.316 228 140 8 218 442 143 345 3.16e-12 68.6
MS.gene24338.t1 AT4G25440 23.843 281 186 10 114 377 151 420 3.19e-13 71.6
MS.gene24338.t1 AT4G25440 26.316 228 140 8 218 442 143 345 3.16e-12 68.6
MS.gene24338.t1 AT4G25440 23.843 281 186 10 114 377 151 420 3.19e-13 71.6
MS.gene24338.t1 AT4G25440 26.316 228 140 8 218 442 143 345 3.16e-12 68.6
MS.gene24338.t1 AT5G51980 23.297 279 190 10 114 377 158 427 5.74e-13 70.9
MS.gene24338.t1 AT5G51980 28.571 224 132 8 218 438 150 348 8.13e-13 70.5
MS.gene24338.t1 AT5G51980 23.297 279 190 10 114 377 158 427 5.74e-13 70.9
MS.gene24338.t1 AT5G51980 28.571 224 132 8 218 438 150 348 8.13e-13 70.5
MS.gene24338.t1 AT3G18130 24.252 301 176 9 120 376 29 321 8.85e-13 69.7
MS.gene24338.t1 AT4G02730 25.000 224 135 10 218 429 127 329 9.02e-13 69.7
MS.gene24338.t1 AT1G48630 24.585 301 175 9 120 376 29 321 2.23e-12 68.6
MS.gene24338.t1 AT5G08390 24.454 229 149 8 208 431 5 214 2.23e-12 70.1
MS.gene24338.t1 AT1G61210 24.348 230 148 8 208 431 4 213 3.87e-12 69.3
MS.gene24338.t1 AT1G61210 24.348 230 148 8 208 431 4 213 4.81e-12 68.9
MS.gene24338.t1 AT5G52820 23.380 355 196 11 114 431 116 431 4.88e-12 68.2
MS.gene24338.t1 AT1G61210 24.348 230 148 8 208 431 4 213 5.62e-12 68.9
MS.gene24338.t1 AT3G18140 29.130 230 137 10 218 438 77 289 6.67e-12 66.6
MS.gene24338.t1 AT5G40880 25.862 232 135 7 148 376 238 435 1.45e-11 66.6
MS.gene24338.t1 AT2G22040 24.351 308 192 14 162 444 15 306 1.48e-11 65.9
MS.gene24338.t1 AT5G40880 25.862 232 135 7 148 376 267 464 1.73e-11 66.6
MS.gene24338.t1 AT5G23430 24.017 229 150 8 208 431 5 214 1.76e-11 67.0
MS.gene24338.t1 AT5G23430 24.017 229 150 8 208 431 5 214 1.77e-11 67.0
MS.gene24338.t1 AT5G23430 24.017 229 150 8 208 431 5 214 1.77e-11 67.0
MS.gene24338.t1 AT1G11160 23.478 230 150 8 208 431 4 213 3.24e-11 66.2
MS.gene24338.t1 AT1G11160 23.478 230 150 8 208 431 4 213 3.50e-11 66.2
MS.gene24338.t1 AT1G11160 23.478 230 150 8 208 431 4 213 3.54e-11 66.2
MS.gene24338.t1 AT1G15440 27.803 223 138 7 218 435 348 552 4.59e-11 65.9
MS.gene24338.t1 AT1G21650 23.488 281 169 10 110 380 522 766 6.43e-11 65.5
MS.gene24338.t1 AT3G21540 28.313 166 109 5 216 378 537 695 6.94e-11 65.1
MS.gene24338.t1 AT5G50230 24.199 281 168 14 141 398 228 486 7.12e-11 64.7
MS.gene24338.t1 AT1G15440 27.803 223 138 7 218 435 388 592 7.75e-11 65.1
MS.gene24338.t1 AT1G18080 23.529 306 177 11 118 376 27 322 7.79e-11 63.9

Find 119 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGCTTCTGCTGGGAATT+TGG 0.194944 1.1:+2827012 MS.gene24338:CDS
CTGATGGATTGGTTAACTTT+TGG 0.209928 1.1:+2826927 MS.gene24338:CDS
TAATTAGTTTCTCTTATTAC+TGG 0.260421 1.1:-2827335 None:intergenic
GATATTGTATAGTGGGAGTT+TGG 0.285081 1.1:+2827189 MS.gene24338:CDS
GGTGACCAGTGAAGATCTTT+TGG 0.314403 1.1:-2826415 None:intergenic
CTCCACTGCTAAACATTTAA+CGG 0.343230 1.1:-2827128 None:intergenic
GAAAACACCGAACTGCATTA+TGG 0.359622 1.1:+2826567 MS.gene24338:CDS
CCTATCTCTACTCCGCTTCA+TGG 0.364291 1.1:+2826639 MS.gene24338:CDS
AGGCTTCTGTTGTGGAAAAT+CGG 0.365541 1.1:-2825749 None:intergenic
GGGACAGAACCGTCAAAGTT+TGG 0.366588 1.1:+2826660 MS.gene24338:CDS
GGCTTCTGTTGTGGAAAATC+GGG 0.370681 1.1:-2825748 None:intergenic
TAGTGGGAGTTTGGATAAAT+CGG 0.379605 1.1:+2827198 MS.gene24338:CDS
TGGATAAATCGGTTAAGGTT+TGG 0.407945 1.1:+2827209 MS.gene24338:CDS
GGTTAAGGTTTGGAGTGTTT+CGG 0.415090 1.1:+2827219 MS.gene24338:CDS
AATTGACAGCACAGGTTCAA+TGG 0.416389 1.1:+2826889 MS.gene24338:CDS
GAGTTTGGATAAATCGGTTA+AGG 0.419046 1.1:+2827204 MS.gene24338:CDS
TTGAAAATGTCTTTGAGAGT+TGG 0.425960 1.1:-2826509 None:intergenic
GGCAGCGCTGCTGCTTCGCA+TGG 0.427565 1.1:-2825790 None:intergenic
AGAAAAGAGGACATCATGTT+TGG 0.428247 1.1:+2825645 None:intergenic
ATTTATTCTTTAGCCGCTTC+CGG 0.433918 1.1:+2826278 MS.gene24338:CDS
GAATTTGTTGTTTGATTCCA+TGG 0.435201 1.1:-2826167 None:intergenic
TGCTTTCACCAATCCACTGT+TGG 0.441842 1.1:-2826378 None:intergenic
CCAGCACGTTTGTGAACACT+AGG 0.447862 1.1:-2826479 None:intergenic
GGCATAGTCATCGTCGGTAT+AGG 0.452886 1.1:-2825769 None:intergenic
CTGCCGGGGTCGTAGTAGTA+AGG 0.461023 1.1:-2825825 None:intergenic
GGCGATTCTCCAAACTTTGA+CGG 0.461584 1.1:-2826669 None:intergenic
GTTTATTGTGGTGCTTCTGA+TGG 0.463697 1.1:+2826911 MS.gene24338:CDS
TCCACTGCTAAACATTTAAC+GGG 0.465640 1.1:-2827127 None:intergenic
GTCGTAGTAGTAAGGGCTCA+TGG 0.469102 1.1:-2825817 None:intergenic
TTGTGGTGCTTCTGATGGAT+TGG 0.469946 1.1:+2826916 MS.gene24338:CDS
AAGACGGTAAAATCCGTGTT+TGG 0.471026 1.1:+2826438 MS.gene24338:CDS
CCATGAAGCGGAGTAGAGAT+AGG 0.474781 1.1:-2826639 None:intergenic
CAGCGGTGGATATTGTATAG+TGG 0.476176 1.1:+2827181 MS.gene24338:CDS
CAGCGTTAACTGCGTCCTCA+TGG 0.479785 1.1:-2826721 None:intergenic
GCAGTTAACGCTGTCGTTTG+TGG 0.482135 1.1:+2826731 MS.gene24338:CDS
TAGCAGTTATTCTTCAAGTC+GGG 0.487480 1.1:+2827312 MS.gene24338:CDS
CCTCCACAGAATTCACTAAT+CGG 0.488284 1.1:+2826230 MS.gene24338:CDS
TTCCATGGTGACATCATCAT+TGG 0.492726 1.1:-2826152 None:intergenic
GGATTCCAAGCACTTTGAAT+CGG 0.494485 1.1:-2826690 None:intergenic
TCGTAGTAGTAAGGGCTCAT+GGG 0.499362 1.1:-2825816 None:intergenic
TAAATGTTTAGCAGTGGAGC+AGG 0.501256 1.1:+2827132 MS.gene24338:CDS
ATTTCGGAATTCAGATTAAG+TGG 0.505622 1.1:+2826119 MS.gene24338:intron
ATGTTTGGCAGCAACAGAAA+TGG 0.507504 1.1:+2825660 MS.gene24338:CDS
GACCATTGTGGCTTTGAGAA+TGG 0.507721 1.1:-2826191 None:intergenic
AATCGCCGATTCAAAGTGCT+TGG 0.510834 1.1:+2826685 MS.gene24338:CDS
CACTTTAACTGTTCCGTCTG+CGG 0.512345 1.1:-2826780 None:intergenic
AATAAATGTGACCCTCTTCG+CGG 0.519114 1.1:-2826262 None:intergenic
CGAACCTCGACATAATTGCT+TGG 0.519441 1.1:-2826545 None:intergenic
GACGGTTCTGTCCCATGAAG+CGG 0.520394 1.1:-2826651 None:intergenic
TGCGTCCTCATGGGAAGTAA+TGG 0.522213 1.1:-2826711 None:intergenic
GAGTGTTTCGGAGAGTATGC+AGG 0.525774 1.1:+2827231 MS.gene24338:CDS
TCCGGCCAAAAGATCTTCAC+TGG 0.528849 1.1:+2826410 MS.gene24338:CDS
GAATTCACTAATCGGTTCAC+TGG 0.529725 1.1:+2826238 MS.gene24338:CDS
TGAAGCGGACTCGATACCTT+CGG 0.529765 1.1:+2827282 MS.gene24338:CDS
CTATCTCTACTCCGCTTCAT+GGG 0.530420 1.1:+2826640 MS.gene24338:CDS
GGTTCACTGGTCCGCGAAGA+GGG 0.531067 1.1:+2826251 MS.gene24338:CDS
ATTCAAATCCAACAGTGGAT+TGG 0.533748 1.1:+2826370 MS.gene24338:CDS
GTATAATAAGTCACCGGAAG+CGG 0.536150 1.1:-2826291 None:intergenic
GTTTGATCCATAATGCAGTT+CGG 0.536393 1.1:-2826574 None:intergenic
TGAACATGGTGGGGTCCTCA+AGG 0.536617 1.1:+2826967 MS.gene24338:CDS
ATAAGCAATTTGAACATGGT+GGG 0.539684 1.1:+2826957 MS.gene24338:CDS
AACAGAAATGGTAGCAGCAA+TGG 0.541943 1.1:+2825672 MS.gene24338:CDS
ACTTGAAGAATAACTGCTAT+CGG 0.549184 1.1:-2827308 None:intergenic
CGTAGTAGTAAGGGCTCATG+GGG 0.557738 1.1:-2825815 None:intergenic
AGCGTTAACTGCGTCCTCAT+GGG 0.560203 1.1:-2826720 None:intergenic
TCCGGTGACTTATTATACAC+TGG 0.561865 1.1:+2826296 MS.gene24338:CDS
CCTAGTGTTCACAAACGTGC+TGG 0.563233 1.1:+2826479 MS.gene24338:CDS
GTGAAAGCAATCATAATCTC+CGG 0.564651 1.1:+2826392 MS.gene24338:CDS
ACGCTAGAGGCGATCAGCGG+TGG 0.565124 1.1:+2827167 MS.gene24338:CDS
AGCGGTGGATATTGTATAGT+GGG 0.565549 1.1:+2827182 MS.gene24338:CDS
GACTTCTATGACTTCTGAAG+CGG 0.565569 1.1:+2827267 MS.gene24338:CDS
CAGAAGTCATAGAAGTCATA+CGG 0.569108 1.1:-2827261 None:intergenic
GCTTTAGCAATTGACAGCAC+AGG 0.572390 1.1:+2826881 MS.gene24338:CDS
GAATTCAGATTAAGTGGTGA+GGG 0.574833 1.1:+2826125 MS.gene24338:intron
ACAGGTTCAATGGTTTATTG+TGG 0.574899 1.1:+2826899 MS.gene24338:CDS
ATGAAAAGGAGAGACCTGCC+GGG 0.575884 1.1:-2825840 None:intergenic
TAAAACAACAAAACATGCAA+TGG 0.575977 1.1:+2826823 MS.gene24338:CDS
CGGTTCACTGGTCCGCGAAG+AGG 0.577185 1.1:+2826250 MS.gene24338:CDS
GATTGCATGAACTGTGGACG+AGG 0.578526 1.1:-2825720 None:intergenic
GTCGGTATAGGCTTCTGTTG+TGG 0.580739 1.1:-2825757 None:intergenic
TCCCGTTAAATGTTTAGCAG+TGG 0.585347 1.1:+2827126 MS.gene24338:CDS
GAACATGGTGGGGTCCTCAA+GGG 0.590913 1.1:+2826968 MS.gene24338:CDS
ATAGCAGTTATTCTTCAAGT+CGG 0.598933 1.1:+2827311 MS.gene24338:CDS
ATCTTCACTGGTCACCAAGA+CGG 0.606747 1.1:+2826422 MS.gene24338:CDS
GCCAGTGTATAATAAGTCAC+CGG 0.607754 1.1:-2826297 None:intergenic
AAGAATCTTCAAGAATATTG+CGG 0.611703 1.1:+2826347 MS.gene24338:CDS
CGTGATAAGCAATTTGAACA+TGG 0.614622 1.1:+2826953 MS.gene24338:CDS
TGAGAGAAACTTTCCAAACA+CGG 0.617451 1.1:-2826451 None:intergenic
GGAATTCAGATTAAGTGGTG+AGG 0.618381 1.1:+2826124 MS.gene24338:intron
CTTACTACTACGACCCCGGC+AGG 0.625720 1.1:+2825826 MS.gene24338:CDS
TCTTCATGTTGTGACCATTG+TGG 0.628476 1.1:-2826203 None:intergenic
TAAGCAATTTGAACATGGTG+GGG 0.630149 1.1:+2826958 MS.gene24338:CDS
TAAACCAAGCAATTATGTCG+AGG 0.630261 1.1:+2826541 MS.gene24338:CDS
TGCCGGGGTCGTAGTAGTAA+GGG 0.633486 1.1:-2825824 None:intergenic
GATAAGCAATTTGAACATGG+TGG 0.635398 1.1:+2826956 MS.gene24338:CDS
ATATGTGTGTGGAAAAGAGA+CGG 0.638236 1.1:+2827061 MS.gene24338:CDS
GAACTGTGGACGAGGTATGT+TGG 0.644937 1.1:-2825712 None:intergenic
CTGATAAAACTATATGTGTG+TGG 0.648294 1.1:+2827050 MS.gene24338:CDS
CACCATTCTCAAAGCCACAA+TGG 0.648605 1.1:+2826189 MS.gene24338:CDS
GCTTCTGTTGTGGAAAATCG+GGG 0.650013 1.1:-2825747 None:intergenic
CAGCACGTTTGTGAACACTA+GGG 0.651977 1.1:-2826478 None:intergenic
GCTGTCGTTTGTGGAAATGA+CGG 0.653068 1.1:+2826740 MS.gene24338:CDS
TGCGGATTCAAATCCAACAG+TGG 0.653646 1.1:+2826365 MS.gene24338:CDS
CACCAATGATGATGTCACCA+TGG 0.656028 1.1:+2826150 MS.gene24338:CDS
TCGCATGGCATAGTCATCGT+CGG 0.657109 1.1:-2825775 None:intergenic
GATCGCGAATGTGACGCTAG+AGG 0.658722 1.1:+2827154 MS.gene24338:CDS
GGTTCAGATTGCATGAACTG+TGG 0.659555 1.1:-2825726 None:intergenic
AGCCCTTACTACTACGACCC+CGG 0.660537 1.1:+2825822 MS.gene24338:CDS
GAACCGATTAGTGAATTCTG+TGG 0.660596 1.1:-2826233 None:intergenic
CAGACGGAACAGTTAAAGTG+TGG 0.670124 1.1:+2826783 MS.gene24338:CDS
ACAGCAAGAACATTCGTGTG+TGG 0.678557 1.1:+2826324 MS.gene24338:CDS
CTGCAAGCTTATGACCCTTG+AGG 0.683943 1.1:-2826982 None:intergenic
GGAATCCATTACTTCCCATG+AGG 0.695900 1.1:+2826706 MS.gene24338:CDS
GTGACGCTAGAGGCGATCAG+CGG 0.698343 1.1:+2827164 MS.gene24338:CDS
CCGATTAGTGAATTCTGTGG+AGG 0.708658 1.1:-2826230 None:intergenic
TGAAAAGGAGAGACCTGCCG+GGG 0.710448 1.1:-2825839 None:intergenic
TAACTGCTATCGGATTCCGA+AGG 0.748944 1.1:-2827298 None:intergenic
GTGTGGCGAAGAGAAGCACG+TGG 0.779519 1.1:+2826800 MS.gene24338:CDS
GTAGTAGTAAGGGCTCATGG+GGG 0.834324 1.1:-2825814 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAAGAAAATGAAA+AGG - chr1.1:2825857-2825876 None:intergenic 10.0%
!!! AATAACATTTTATTTAGATT+TGG - chr1.1:2826055-2826074 None:intergenic 10.0%
!!! CTTATAGTTAATTTGAATTT+CGG + chr1.1:2826103-2826122 MS.gene24338:intron 15.0%
!! CAAATTCAATTTACATCAAA+CGG - chr1.1:2825988-2826007 None:intergenic 20.0%
! AAGAATCTTCAAGAATATTG+CGG + chr1.1:2826347-2826366 MS.gene24338:CDS 25.0%
! TAAAACAACAAAACATGCAA+TGG + chr1.1:2826823-2826842 MS.gene24338:CDS 25.0%
!! ATTGAATTTGAGTTCACAAA+CGG + chr1.1:2825998-2826017 MS.gene24338:intron 25.0%
ACTTGAAGAATAACTGCTAT+CGG - chr1.1:2827311-2827330 None:intergenic 30.0%
ATAAGCAATTTGAACATGGT+GGG + chr1.1:2826957-2826976 MS.gene24338:CDS 30.0%
ATAGCAGTTATTCTTCAAGT+CGG + chr1.1:2827311-2827330 MS.gene24338:CDS 30.0%
ATTTCGGAATTCAGATTAAG+TGG + chr1.1:2826119-2826138 MS.gene24338:intron 30.0%
CTGATAAAACTATATGTGTG+TGG + chr1.1:2827050-2827069 MS.gene24338:CDS 30.0%
! TTGAAAATGTCTTTGAGAGT+TGG - chr1.1:2826512-2826531 None:intergenic 30.0%
!! GAATTTGTTGTTTGATTCCA+TGG - chr1.1:2826170-2826189 None:intergenic 30.0%
!!! TGATGGATTGGTTAACTTTT+GGG + chr1.1:2826928-2826947 MS.gene24338:CDS 30.0%
ACAGGTTCAATGGTTTATTG+TGG + chr1.1:2826899-2826918 MS.gene24338:CDS 35.0%
ATATGTGTGTGGAAAAGAGA+CGG + chr1.1:2827061-2827080 MS.gene24338:CDS 35.0%
ATTCAAATCCAACAGTGGAT+TGG + chr1.1:2826370-2826389 MS.gene24338:CDS 35.0%
ATTTATTCTTTAGCCGCTTC+CGG + chr1.1:2826278-2826297 MS.gene24338:CDS 35.0%
CAGAAGTCATAGAAGTCATA+CGG - chr1.1:2827264-2827283 None:intergenic 35.0%
CGTGATAAGCAATTTGAACA+TGG + chr1.1:2826953-2826972 MS.gene24338:CDS 35.0%
CTCCACTGCTAAACATTTAA+CGG - chr1.1:2827131-2827150 None:intergenic 35.0%
GAATTCAGATTAAGTGGTGA+GGG + chr1.1:2826125-2826144 MS.gene24338:intron 35.0%
GAGTTTGGATAAATCGGTTA+AGG + chr1.1:2827204-2827223 MS.gene24338:CDS 35.0%
GATAAGCAATTTGAACATGG+TGG + chr1.1:2826956-2826975 MS.gene24338:CDS 35.0%
GTGAAAGCAATCATAATCTC+CGG + chr1.1:2826392-2826411 MS.gene24338:CDS 35.0%
GTTTGATCCATAATGCAGTT+CGG - chr1.1:2826577-2826596 None:intergenic 35.0%
TAAACCAAGCAATTATGTCG+AGG + chr1.1:2826541-2826560 MS.gene24338:CDS 35.0%
TAAGCAATTTGAACATGGTG+GGG + chr1.1:2826958-2826977 MS.gene24338:CDS 35.0%
TAGCAGTTATTCTTCAAGTC+GGG + chr1.1:2827312-2827331 MS.gene24338:CDS 35.0%
TAGTGGGAGTTTGGATAAAT+CGG + chr1.1:2827198-2827217 MS.gene24338:CDS 35.0%
TCCACTGCTAAACATTTAAC+GGG - chr1.1:2827130-2827149 None:intergenic 35.0%
TGAGAGAAACTTTCCAAACA+CGG - chr1.1:2826454-2826473 None:intergenic 35.0%
TGGATAAATCGGTTAAGGTT+TGG + chr1.1:2827209-2827228 MS.gene24338:CDS 35.0%
TTAGATTTGGATTCTCTGCA+TGG - chr1.1:2826042-2826061 None:intergenic 35.0%
TTGGATTCTTTGCATGAACA+TGG + chr1.1:2825945-2825964 MS.gene24338:intron 35.0%
! GATATTGTATAGTGGGAGTT+TGG + chr1.1:2827189-2827208 MS.gene24338:CDS 35.0%
!! AATGACGGAATTGTTTTCTC+TGG + chr1.1:2826755-2826774 MS.gene24338:CDS 35.0%
!! CACGTGTATGTCTGTTTTAA+CGG + chr1.1:2827093-2827112 MS.gene24338:CDS 35.0%
!! TTTTGTGTTTAGCTTCTGCT+GGG + chr1.1:2827005-2827024 MS.gene24338:CDS 35.0%
!!! ACGTGTATGTCTGTTTTAAC+GGG + chr1.1:2827094-2827113 MS.gene24338:CDS 35.0%
!!! CTGATGGATTGGTTAACTTT+TGG + chr1.1:2826927-2826946 MS.gene24338:CDS 35.0%
AACAGAAATGGTAGCAGCAA+TGG + chr1.1:2825672-2825691 MS.gene24338:CDS 40.0%
AAGACGGTAAAATCCGTGTT+TGG + chr1.1:2826438-2826457 MS.gene24338:CDS 40.0%
AATAAATGTGACCCTCTTCG+CGG - chr1.1:2826265-2826284 None:intergenic 40.0%
AATTGACAGCACAGGTTCAA+TGG + chr1.1:2826889-2826908 MS.gene24338:CDS 40.0%
AGCGGTGGATATTGTATAGT+GGG + chr1.1:2827182-2827201 MS.gene24338:CDS 40.0%
AGGCTTCTGTTGTGGAAAAT+CGG - chr1.1:2825752-2825771 None:intergenic 40.0%
ATGTTTGGCAGCAACAGAAA+TGG + chr1.1:2825660-2825679 MS.gene24338:CDS 40.0%
CCTCCACAGAATTCACTAAT+CGG + chr1.1:2826230-2826249 MS.gene24338:CDS 40.0%
GAAAACACCGAACTGCATTA+TGG + chr1.1:2826567-2826586 MS.gene24338:CDS 40.0%
GAACCGATTAGTGAATTCTG+TGG - chr1.1:2826236-2826255 None:intergenic 40.0%
GCCAGTGTATAATAAGTCAC+CGG - chr1.1:2826300-2826319 None:intergenic 40.0%
GGAATTCAGATTAAGTGGTG+AGG + chr1.1:2826124-2826143 MS.gene24338:intron 40.0%
GGATTCCAAGCACTTTGAAT+CGG - chr1.1:2826693-2826712 None:intergenic 40.0%
GTATAATAAGTCACCGGAAG+CGG - chr1.1:2826294-2826313 None:intergenic 40.0%
GTTTATTGTGGTGCTTCTGA+TGG + chr1.1:2826911-2826930 MS.gene24338:CDS 40.0%
TAAATGTTTAGCAGTGGAGC+AGG + chr1.1:2827132-2827151 MS.gene24338:CDS 40.0%
TCCCGTTAAATGTTTAGCAG+TGG + chr1.1:2827126-2827145 MS.gene24338:CDS 40.0%
TCCGGTGACTTATTATACAC+TGG + chr1.1:2826296-2826315 MS.gene24338:CDS 40.0%
TCTTCATGTTGTGACCATTG+TGG - chr1.1:2826206-2826225 None:intergenic 40.0%
TTCCATGGTGACATCATCAT+TGG - chr1.1:2826155-2826174 None:intergenic 40.0%
! AAACACGGATTTTACCGTCT+TGG - chr1.1:2826439-2826458 None:intergenic 40.0%
! GAATTCACTAATCGGTTCAC+TGG + chr1.1:2826238-2826257 MS.gene24338:CDS 40.0%
! GACTTCTATGACTTCTGAAG+CGG + chr1.1:2827267-2827286 MS.gene24338:CDS 40.0%
! GGTTAAGGTTTGGAGTGTTT+CGG + chr1.1:2827219-2827238 MS.gene24338:CDS 40.0%
! TTTAGCTTCTGCTGGGAATT+TGG + chr1.1:2827012-2827031 MS.gene24338:CDS 40.0%
! TTTTGTCTGGAGAGAGACTT+AGG - chr1.1:2826619-2826638 None:intergenic 40.0%
!! GAGTAGAGATAGGTTTTGTC+TGG - chr1.1:2826632-2826651 None:intergenic 40.0%
!! GTTTTGTGTTTAGCTTCTGC+TGG + chr1.1:2827004-2827023 MS.gene24338:CDS 40.0%
!!! GCTGGGAATTTGGTTTTTAG+TGG + chr1.1:2827022-2827041 MS.gene24338:CDS 40.0%
AATGAAAAGGAGAGACCTGC+CGG - chr1.1:2825844-2825863 None:intergenic 45.0%
ACAGCAAGAACATTCGTGTG+TGG + chr1.1:2826324-2826343 MS.gene24338:CDS 45.0%
ATCTTCACTGGTCACCAAGA+CGG + chr1.1:2826422-2826441 MS.gene24338:CDS 45.0%
CACCATTCTCAAAGCCACAA+TGG + chr1.1:2826189-2826208 MS.gene24338:CDS 45.0%
CACTTTAACTGTTCCGTCTG+CGG - chr1.1:2826783-2826802 None:intergenic 45.0%
CAGACGGAACAGTTAAAGTG+TGG + chr1.1:2826783-2826802 MS.gene24338:CDS 45.0%
CAGCACGTTTGTGAACACTA+GGG - chr1.1:2826481-2826500 None:intergenic 45.0%
CAGCGGTGGATATTGTATAG+TGG + chr1.1:2827181-2827200 MS.gene24338:CDS 45.0%
CCAAATAGCTCGTCTAGCTA+AGG - chr1.1:2825929-2825948 None:intergenic 45.0%
CCGATTAGTGAATTCTGTGG+AGG - chr1.1:2826233-2826252 None:intergenic 45.0%
CCTTAGCTAGACGAGCTATT+TGG + chr1.1:2825926-2825945 MS.gene24338:intron 45.0%
CGAACCTCGACATAATTGCT+TGG - chr1.1:2826548-2826567 None:intergenic 45.0%
CTATCTCTACTCCGCTTCAT+GGG + chr1.1:2826640-2826659 MS.gene24338:CDS 45.0%
GCTTCTGTTGTGGAAAATCG+GGG - chr1.1:2825750-2825769 None:intergenic 45.0%
GCTTTAGCAATTGACAGCAC+AGG + chr1.1:2826881-2826900 MS.gene24338:CDS 45.0%
GGAATCCATTACTTCCCATG+AGG + chr1.1:2826706-2826725 MS.gene24338:CDS 45.0%
GGCGATTCTCCAAACTTTGA+CGG - chr1.1:2826672-2826691 None:intergenic 45.0%
GGCTTCTGTTGTGGAAAATC+GGG - chr1.1:2825751-2825770 None:intergenic 45.0%
GGTTCAGATTGCATGAACTG+TGG - chr1.1:2825729-2825748 None:intergenic 45.0%
TAACTGCTATCGGATTCCGA+AGG - chr1.1:2827301-2827320 None:intergenic 45.0%
TCGTAGTAGTAAGGGCTCAT+GGG - chr1.1:2825819-2825838 None:intergenic 45.0%
TGCGGATTCAAATCCAACAG+TGG + chr1.1:2826365-2826384 MS.gene24338:CDS 45.0%
TGCTTTCACCAATCCACTGT+TGG - chr1.1:2826381-2826400 None:intergenic 45.0%
! ACCAGTGAAGATCTTTTGGC+CGG - chr1.1:2826414-2826433 None:intergenic 45.0%
! CACCAATGATGATGTCACCA+TGG + chr1.1:2826150-2826169 MS.gene24338:CDS 45.0%
! GCTGTCGTTTGTGGAAATGA+CGG + chr1.1:2826740-2826759 MS.gene24338:CDS 45.0%
! GGTGACCAGTGAAGATCTTT+TGG - chr1.1:2826418-2826437 None:intergenic 45.0%
! TTGTGGTGCTTCTGATGGAT+TGG + chr1.1:2826916-2826935 MS.gene24338:CDS 45.0%
!! AATCGCCGATTCAAAGTGCT+TGG + chr1.1:2826685-2826704 MS.gene24338:CDS 45.0%
!! GACCATTGTGGCTTTGAGAA+TGG - chr1.1:2826194-2826213 None:intergenic 45.0%
!!! TCTGTTTTAACGGGACACGA+TGG + chr1.1:2827103-2827122 MS.gene24338:CDS 45.0%
AGCGTTAACTGCGTCCTCAT+GGG - chr1.1:2826723-2826742 None:intergenic 50.0%
ATGAAAAGGAGAGACCTGCC+GGG - chr1.1:2825843-2825862 None:intergenic 50.0%
CCAGCACGTTTGTGAACACT+AGG - chr1.1:2826482-2826501 None:intergenic 50.0%
CCATGAAGCGGAGTAGAGAT+AGG - chr1.1:2826642-2826661 None:intergenic 50.0%
CCTAGTGTTCACAAACGTGC+TGG + chr1.1:2826479-2826498 MS.gene24338:CDS 50.0%
CCTATCTCTACTCCGCTTCA+TGG + chr1.1:2826639-2826658 MS.gene24338:CDS 50.0%
CGTAGTAGTAAGGGCTCATG+GGG - chr1.1:2825818-2825837 None:intergenic 50.0%
CTGCAAGCTTATGACCCTTG+AGG - chr1.1:2826985-2827004 None:intergenic 50.0%
GAACTGTGGACGAGGTATGT+TGG - chr1.1:2825715-2825734 None:intergenic 50.0%
GATTGCATGAACTGTGGACG+AGG - chr1.1:2825723-2825742 None:intergenic 50.0%
GGCATAGTCATCGTCGGTAT+AGG - chr1.1:2825772-2825791 None:intergenic 50.0%
GGGACAGAACCGTCAAAGTT+TGG + chr1.1:2826660-2826679 MS.gene24338:CDS 50.0%
GTAGTAGTAAGGGCTCATGG+GGG - chr1.1:2825817-2825836 None:intergenic 50.0%
GTCGGTATAGGCTTCTGTTG+TGG - chr1.1:2825760-2825779 None:intergenic 50.0%
GTCGTAGTAGTAAGGGCTCA+TGG - chr1.1:2825820-2825839 None:intergenic 50.0%
TCCGGCCAAAAGATCTTCAC+TGG + chr1.1:2826410-2826429 MS.gene24338:CDS 50.0%
TCGCATGGCATAGTCATCGT+CGG - chr1.1:2825778-2825797 None:intergenic 50.0%
TGCGTCCTCATGGGAAGTAA+TGG - chr1.1:2826714-2826733 None:intergenic 50.0%
! GAGTGTTTCGGAGAGTATGC+AGG + chr1.1:2827231-2827250 MS.gene24338:CDS 50.0%
! GCAGTTAACGCTGTCGTTTG+TGG + chr1.1:2826731-2826750 MS.gene24338:CDS 50.0%
! TGAAGCGGACTCGATACCTT+CGG + chr1.1:2827282-2827301 MS.gene24338:CDS 50.0%
!! GTTTTCTCTGGTTCCGCAGA+CGG + chr1.1:2826767-2826786 MS.gene24338:CDS 50.0%
AGCCCTTACTACTACGACCC+CGG + chr1.1:2825822-2825841 MS.gene24338:CDS 55.0%
CAGCGTTAACTGCGTCCTCA+TGG - chr1.1:2826724-2826743 None:intergenic 55.0%
GACGGTTCTGTCCCATGAAG+CGG - chr1.1:2826654-2826673 None:intergenic 55.0%
GATCGCGAATGTGACGCTAG+AGG + chr1.1:2827154-2827173 MS.gene24338:CDS 55.0%
TGAAAAGGAGAGACCTGCCG+GGG - chr1.1:2825842-2825861 None:intergenic 55.0%
TGCCGGGGTCGTAGTAGTAA+GGG - chr1.1:2825827-2825846 None:intergenic 55.0%
! GAACATGGTGGGGTCCTCAA+GGG + chr1.1:2826968-2826987 MS.gene24338:CDS 55.0%
! TGAACATGGTGGGGTCCTCA+AGG + chr1.1:2826967-2826986 MS.gene24338:CDS 55.0%
CTGCCGGGGTCGTAGTAGTA+AGG - chr1.1:2825828-2825847 None:intergenic 60.0%
CTTACTACTACGACCCCGGC+AGG + chr1.1:2825826-2825845 MS.gene24338:CDS 60.0%
GGTTCACTGGTCCGCGAAGA+GGG + chr1.1:2826251-2826270 MS.gene24338:CDS 60.0%
GTAGTAAGGGCTCATGGGGG+AGG - chr1.1:2825814-2825833 None:intergenic 60.0%
GTGACGCTAGAGGCGATCAG+CGG + chr1.1:2827164-2827183 MS.gene24338:CDS 60.0%
! GTGTGGCGAAGAGAAGCACG+TGG + chr1.1:2826800-2826819 MS.gene24338:CDS 60.0%
ACGCTAGAGGCGATCAGCGG+TGG + chr1.1:2827167-2827186 MS.gene24338:CDS 65.0%
CGGTTCACTGGTCCGCGAAG+AGG + chr1.1:2826250-2826269 MS.gene24338:CDS 65.0%
! GGCAGCGCTGCTGCTTCGCA+TGG - chr1.1:2825793-2825812 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 2825660 2827354 2825660 ID=MS.gene24338
chr1.1 mRNA 2825660 2827354 2825660 ID=MS.gene24338.t1;Parent=MS.gene24338
chr1.1 exon 2825660 2825847 2825660 ID=MS.gene24338.t1.exon1;Parent=MS.gene24338.t1
chr1.1 CDS 2825660 2825847 2825660 ID=cds.MS.gene24338.t1;Parent=MS.gene24338.t1
chr1.1 exon 2826133 2827354 2826133 ID=MS.gene24338.t1.exon2;Parent=MS.gene24338.t1
chr1.1 CDS 2826133 2827354 2826133 ID=cds.MS.gene24338.t1;Parent=MS.gene24338.t1
Gene Sequence

>MS.gene24338

ATGTTTGGCAGCAACAGAAATGGTAGCAGCAATGGCAGTAGCAACAACAACACCAACATACCTCGTCCACAGTTCATGCAATCTGAACCCCGATTTTCCACAACAGAAGCCTATACCGACGATGACTATGCCATGCGAAGCAGCAGCGCTGCCTCCCCCATGAGCCCTTACTACTACGACCCCGGCAGGTCTCTCCTTTTCATTTTCTTTATTTATTTTACATAAGTTAGTGAATACGTCAAAGTTCTTTATTTATGTTCGATGATCCTTAGCTAGACGAGCTATTTGGATTCTTTGCATGAACATGGTGCAGTTCACTGTAGAACCGTTTGATGTAAATTGAATTTGAGTTCACAAACGGCTCTGCAATGCTGCTGCACCATGCAGAGAATCCAAATCTAAATAAAATGTTATTATTGTAATCTAAATTTAATCGTTGCTAACTTATAGTTAATTTGAATTTCGGAATTCAGATTAAGTGGTGAGGGCTCACCAATGATGATGTCACCATGGAATCAAACAACAAATTCACCATTCTCAAAGCCACAATGGTCACAACATGAAGACACACCTCCACAGAATTCACTAATCGGTTCACTGGTCCGCGAAGAGGGTCACATTTATTCTTTAGCCGCTTCCGGTGACTTATTATACACTGGCTCAGACAGCAAGAACATTCGTGTGTGGAAGAATCTTCAAGAATATTGCGGATTCAAATCCAACAGTGGATTGGTGAAAGCAATCATAATCTCCGGCCAAAAGATCTTCACTGGTCACCAAGACGGTAAAATCCGTGTTTGGAAAGTTTCTCTCAAGAACCCTAGTGTTCACAAACGTGCTGGAACATTGCCAACTCTCAAAGACATTTTCAAAAGCTCGATTAAACCAAGCAATTATGTCGAGGTTCGAAAACACCGAACTGCATTATGGATCAAACATTCTGATGCAGTTTCATGCCTAAGTCTCTCTCCAGACAAAACCTATCTCTACTCCGCTTCATGGGACAGAACCGTCAAAGTTTGGAGAATCGCCGATTCAAAGTGCTTGGAATCCATTACTTCCCATGAGGACGCAGTTAACGCTGTCGTTTGTGGAAATGACGGAATTGTTTTCTCTGGTTCCGCAGACGGAACAGTTAAAGTGTGGCGAAGAGAAGCACGTGGTAAAACAACAAAACATGCAATGGTTAAACAACTTCTAAAACAAGAATGTGCAGTAACTGCTTTAGCAATTGACAGCACAGGTTCAATGGTTTATTGTGGTGCTTCTGATGGATTGGTTAACTTTTGGGAACGTGATAAGCAATTTGAACATGGTGGGGTCCTCAAGGGTCATAAGCTTGCAGTTTTGTGTTTAGCTTCTGCTGGGAATTTGGTTTTTAGTGGTTCAGCTGATAAAACTATATGTGTGTGGAAAAGAGACGGAGTTATTCACACGTGTATGTCTGTTTTAACGGGACACGATGGTCCCGTTAAATGTTTAGCAGTGGAGCAGGATCGCGAATGTGACGCTAGAGGCGATCAGCGGTGGATATTGTATAGTGGGAGTTTGGATAAATCGGTTAAGGTTTGGAGTGTTTCGGAGAGTATGCAGGTACAACACCGTATGACTTCTATGACTTCTGAAGCGGACTCGATACCTTCGGAATCCGATAGCAGTTATTCTTCAAGTCGGGCCAGTAATAAGAGAAACTAA
Protein sequence

>MS.gene24338.t1

MFGSNRNGSSNGSSNNNTNIPRPQFMQSEPRFSTTEAYTDDDYAMRSSSAASPMSPYYYDPGRLSGEGSPMMMSPWNQTTNSPFSKPQWSQHEDTPPQNSLIGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLQEYCGFKSNSGLVKAIIISGQKIFTGHQDGKIRVWKVSLKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRKHRTALWIKHSDAVSCLSLSPDKTYLYSASWDRTVKVWRIADSKCLESITSHEDAVNAVVCGNDGIVFSGSADGTVKVWRREARGKTTKHAMVKQLLKQECAVTALAIDSTGSMVYCGASDGLVNFWERDKQFEHGGVLKGHKLAVLCLASAGNLVFSGSADKTICVWKRDGVIHTCMSVLTGHDGPVKCLAVEQDRECDARGDQRWILYSGSLDKSVKVWSVSESMQVQHRMTSMTSEADSIPSESDSSYSSSRASNKRN