Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042072.t1 | XP_013458681.1 | 96.4 | 447 | 15 | 1 | 12 | 458 | 15 | 460 | 1.70E-256 | 894.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042072.t1 | Q9FIK0 | 76.6 | 431 | 87 | 4 | 34 | 455 | 13 | 438 | 1.6e-191 | 670.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042072.t1 | G7ZZU2 | 96.4 | 447 | 15 | 1 | 12 | 458 | 15 | 460 | 1.2e-256 | 894.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40737 | MS.gene042072 | PPI |
| MS.gene75027 | MS.gene042072 | PPI |
| MS.gene40242 | MS.gene042072 | PPI |
| MS.gene66384 | MS.gene042072 | PPI |
| MS.gene69076 | MS.gene042072 | PPI |
| MS.gene014594 | MS.gene042072 | PPI |
| MS.gene030334 | MS.gene042072 | PPI |
| MS.gene042072 | MS.gene014596 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042072.t1 | MTR_4g134290 | 96.247 | 453 | 15 | 2 | 6 | 458 | 10 | 460 | 0.0 | 903 |
| MS.gene042072.t1 | MTR_3g110395 | 55.556 | 441 | 183 | 5 | 24 | 457 | 21 | 455 | 4.11e-178 | 509 |
| MS.gene042072.t1 | MTR_8g102190 | 55.329 | 441 | 183 | 6 | 24 | 456 | 20 | 454 | 6.47e-176 | 501 |
| MS.gene042072.t1 | MTR_6g090130 | 55.556 | 441 | 183 | 5 | 24 | 457 | 17 | 451 | 7.97e-175 | 500 |
| MS.gene042072.t1 | MTR_1g090300 | 54.072 | 442 | 190 | 5 | 24 | 458 | 87 | 522 | 2.02e-173 | 498 |
| MS.gene042072.t1 | MTR_2g100710 | 53.017 | 464 | 199 | 7 | 1 | 456 | 1 | 453 | 2.82e-170 | 487 |
| MS.gene042072.t1 | MTR_8g102190 | 54.722 | 360 | 149 | 6 | 24 | 375 | 20 | 373 | 4.57e-138 | 401 |
| MS.gene042072.t1 | MTR_8g102190 | 56.268 | 343 | 137 | 5 | 24 | 358 | 20 | 357 | 2.23e-136 | 397 |
| MS.gene042072.t1 | MTR_2g100710 | 54.372 | 366 | 150 | 6 | 1 | 358 | 1 | 357 | 1.35e-132 | 388 |
| MS.gene042072.t1 | MTR_8g069040 | 48.549 | 379 | 187 | 4 | 78 | 456 | 159 | 529 | 2.98e-120 | 361 |
| MS.gene042072.t1 | MTR_5g032570 | 45.646 | 379 | 198 | 4 | 78 | 456 | 163 | 533 | 1.33e-114 | 347 |
| MS.gene042072.t1 | MTR_2g100670 | 47.253 | 91 | 33 | 2 | 270 | 359 | 32 | 108 | 7.60e-17 | 82.8 |
| MS.gene042072.t1 | MTR_2g066850 | 51.351 | 74 | 35 | 1 | 168 | 241 | 389 | 461 | 3.88e-13 | 72.4 |
| MS.gene042072.t1 | MTR_2g025020 | 26.699 | 206 | 123 | 6 | 91 | 280 | 94 | 287 | 1.11e-12 | 70.5 |
| MS.gene042072.t1 | MTR_4g132700 | 24.365 | 197 | 139 | 4 | 91 | 280 | 98 | 291 | 1.98e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042072.t1 | AT5G47810 | 75.510 | 441 | 90 | 5 | 24 | 455 | 7 | 438 | 0.0 | 676 |
| MS.gene042072.t1 | AT4G32840 | 55.682 | 440 | 179 | 6 | 24 | 456 | 21 | 451 | 2.89e-174 | 497 |
| MS.gene042072.t1 | AT4G26270 | 55.227 | 440 | 183 | 5 | 24 | 456 | 20 | 452 | 6.62e-174 | 497 |
| MS.gene042072.t1 | AT5G61580 | 54.091 | 440 | 189 | 5 | 24 | 456 | 71 | 504 | 2.23e-172 | 494 |
| MS.gene042072.t1 | AT5G56630 | 55.227 | 440 | 182 | 6 | 24 | 456 | 20 | 451 | 2.18e-171 | 490 |
| MS.gene042072.t1 | AT5G61580 | 54.091 | 440 | 188 | 6 | 24 | 456 | 71 | 503 | 1.47e-170 | 490 |
| MS.gene042072.t1 | AT4G29220 | 55.180 | 444 | 179 | 7 | 24 | 457 | 21 | 454 | 9.08e-169 | 483 |
| MS.gene042072.t1 | AT2G22480 | 47.906 | 382 | 185 | 5 | 78 | 456 | 167 | 537 | 7.52e-121 | 363 |
| MS.gene042072.t1 | AT1G12000 | 26.633 | 199 | 132 | 4 | 91 | 280 | 96 | 289 | 6.27e-13 | 71.2 |
| MS.gene042072.t1 | AT4G04040 | 27.365 | 296 | 169 | 14 | 91 | 359 | 98 | 374 | 7.32e-13 | 70.9 |
Find 115 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGATTGAAGCCTTGATTT+TGG | 0.165329 | 8.3:-452823 | None:intergenic |
| GACCAACGACTGAAGGAAAA+TGG | 0.215756 | 8.3:+453820 | MS.gene042072:CDS |
| GAGAGCTTGTTGTTGGTCTT+TGG | 0.225491 | 8.3:+452618 | MS.gene042072:CDS |
| GGAATAATCGACAGATCTTT+TGG | 0.247415 | 8.3:+453580 | MS.gene042072:CDS |
| AGAGAAAACGAGGTCGTTTA+AGG | 0.268173 | 8.3:-452471 | None:intergenic |
| AGAGCTTGTTGTTGGTCTTT+GGG | 0.275052 | 8.3:+452619 | MS.gene042072:CDS |
| GGGTTTAGATCAAGTGGATT+TGG | 0.287362 | 8.3:-452410 | None:intergenic |
| CGTCAACAGGTGTACATTAT+AGG | 0.310047 | 8.3:+453451 | MS.gene042072:intron |
| TATGCATAATTGCCATTAAT+AGG | 0.315023 | 8.3:-454150 | None:intergenic |
| ACTCCAACATCTAAGAAAAC+TGG | 0.333926 | 8.3:-453934 | None:intergenic |
| GGATATACTGGATTTGTTGC+TGG | 0.335094 | 8.3:+454126 | MS.gene042072:CDS |
| TTTGTTGCTGGTCCTATTAA+TGG | 0.347699 | 8.3:+454138 | MS.gene042072:CDS |
| GATGTAGAAGTGTTGGAGTT+GGG | 0.350430 | 8.3:-452447 | None:intergenic |
| TTAATACAAAAGATCATAAT+TGG | 0.352372 | 8.3:+454211 | MS.gene042072:CDS |
| TGTCTAGCTCTTCAGAAAAT+CGG | 0.360046 | 8.3:-454262 | None:intergenic |
| GGTTTAGATCAAGTGGATTT+GGG | 0.366705 | 8.3:-452409 | None:intergenic |
| CTCTGCAATTCATGGTGTTA+TGG | 0.369770 | 8.3:+454101 | MS.gene042072:CDS |
| TTGGTCTTTGGGATCTCTAC+GGG | 0.382473 | 8.3:+452630 | MS.gene042072:CDS |
| CTTCAGAAAATCGGGTTGAT+TGG | 0.401398 | 8.3:-454253 | None:intergenic |
| ATGTAGAAGTGTTGGAGTTG+GGG | 0.402048 | 8.3:-452446 | None:intergenic |
| AGCTGAAGAAATGGTGGGAC+AGG | 0.403942 | 8.3:+453971 | MS.gene042072:CDS |
| AAACTGAATGTTGCAGTTGT+TGG | 0.405610 | 8.3:+453529 | MS.gene042072:CDS |
| GTTATTAGAGAGCTTGTTGT+TGG | 0.416848 | 8.3:+452611 | MS.gene042072:CDS |
| TGCCAGTGGTGAACAATACT+AGG | 0.423482 | 8.3:-452731 | None:intergenic |
| CTGTTCTTGGTATTATATCC+TGG | 0.424765 | 8.3:-453876 | None:intergenic |
| TTGGCACACTCTGCAATTCA+TGG | 0.425156 | 8.3:+454093 | MS.gene042072:CDS |
| TAATTTGTATTGTACACTCT+TGG | 0.431844 | 8.3:+454074 | MS.gene042072:CDS |
| ATAATTGTGTTACATCTTCA+AGG | 0.436653 | 8.3:-452322 | None:intergenic |
| GGTGTTATGGCTGGATATAC+TGG | 0.436710 | 8.3:+454114 | MS.gene042072:CDS |
| ATTTCAAACAGCAGTTGAAA+TGG | 0.436991 | 8.3:+453603 | MS.gene042072:CDS |
| CTCTTCTTCTACTCAACCGT+TGG | 0.438008 | 8.3:+452697 | MS.gene042072:CDS |
| ATTTGGGAAGGTCTTGAGGT+TGG | 0.441059 | 8.3:-452393 | None:intergenic |
| CTTGTAGTTGCCGAGGGTGC+TGG | 0.445579 | 8.3:+453853 | MS.gene042072:CDS |
| CCAAAATCAAGGCTTCAATC+AGG | 0.445999 | 8.3:+452823 | MS.gene042072:CDS |
| GTTGGTCTTTGGGATCTCTA+CGG | 0.457538 | 8.3:+452629 | MS.gene042072:CDS |
| TATAGGCCTTGTGAAGTTGA+TGG | 0.459156 | 8.3:+453678 | MS.gene042072:CDS |
| AAGGAAGAGCGAGATGAATC+TGG | 0.459729 | 8.3:+453907 | MS.gene042072:CDS |
| GTCTAGCTCTTCAGAAAATC+GGG | 0.461245 | 8.3:-454261 | None:intergenic |
| GAGAGTGCAGTTAACGGTAT+AGG | 0.469199 | 8.3:+453661 | MS.gene042072:CDS |
| CTGAAGAACAGTACCACCTT+TGG | 0.476929 | 8.3:-452756 | None:intergenic |
| CAAAAGATCATAATTGGTCA+TGG | 0.484945 | 8.3:+454217 | MS.gene042072:CDS |
| GCAATTCATGGTGTTATGGC+TGG | 0.485776 | 8.3:+454105 | MS.gene042072:CDS |
| GAAGACGCTGTTGCGAGGAC+CGG | 0.491221 | 8.3:-452522 | None:intergenic |
| AGTTGCCGAGGGTGCTGGCC+AGG | 0.491874 | 8.3:+453858 | MS.gene042072:CDS |
| ACCAACGACTGAAGGAAAAT+GGG | 0.493978 | 8.3:+453821 | MS.gene042072:CDS |
| AAGTTGATGGGTCGAAGCAC+AGG | 0.498644 | 8.3:+453691 | MS.gene042072:CDS |
| TGTAGAAGTGTTGGAGTTGG+GGG | 0.499814 | 8.3:-452445 | None:intergenic |
| TAAAGTCAGAGCTGAAGAAA+TGG | 0.504227 | 8.3:+453962 | MS.gene042072:CDS |
| ACATGCGGTGGTCTCTGTCC+TGG | 0.504962 | 8.3:+452578 | MS.gene042072:CDS |
| CTCCAACATCTAAGAAAACT+GGG | 0.507207 | 8.3:-453933 | None:intergenic |
| CTAATAACGGTGTTGAGTCC+AGG | 0.509861 | 8.3:-452596 | None:intergenic |
| TTAAGGTGATGTAGAAGTGT+TGG | 0.514426 | 8.3:-452454 | None:intergenic |
| GTGTACATTATAGGTGGAGA+TGG | 0.515210 | 8.3:+453460 | MS.gene042072:CDS |
| ATAGCAGCTCTTACATCAGA+AGG | 0.525537 | 8.3:-452551 | None:intergenic |
| AATTATCCGTAGCATTTGCA+TGG | 0.527760 | 8.3:-454056 | None:intergenic |
| ACCAAGAACAGAGTCACAAA+AGG | 0.530216 | 8.3:+453888 | MS.gene042072:CDS |
| TAAAACAGTGGATAATGATG+TGG | 0.531127 | 8.3:+453558 | MS.gene042072:CDS |
| GTGGATTTGGGAAGGTCTTG+AGG | 0.531662 | 8.3:-452397 | None:intergenic |
| TATATCCTGGCCAGCACCCT+CGG | 0.533467 | 8.3:-453863 | None:intergenic |
| AACAACAAGCTCTCTAATAA+CGG | 0.535759 | 8.3:-452609 | None:intergenic |
| CGCTTCGCTTATCGCAGCGC+CGG | 0.540203 | 8.3:+452503 | MS.gene042072:CDS |
| AAGTAAGGGTTTAGATCAAG+TGG | 0.541976 | 8.3:-452416 | None:intergenic |
| ACTGTTCTTCAGACTTCTAG+AGG | 0.542115 | 8.3:+452767 | MS.gene042072:CDS |
| GAAATGGCTCAGCAAGCAAT+CGG | 0.545264 | 8.3:+453619 | MS.gene042072:CDS |
| GAGGCCGAGAGTGCAGTTAA+CGG | 0.545631 | 8.3:+453655 | MS.gene042072:CDS |
| AGCAATCGGTGCTGCTCATG+TGG | 0.547519 | 8.3:+453633 | MS.gene042072:CDS |
| TGATGTAGAAGTGTTGGAGT+TGG | 0.549753 | 8.3:-452448 | None:intergenic |
| CAATTATGCATACATTCCAC+TGG | 0.555213 | 8.3:+454161 | MS.gene042072:CDS |
| GTTGATGCCATCCAAAATCA+AGG | 0.555592 | 8.3:+452812 | MS.gene042072:CDS |
| TGCAGTCCATGCAAATGCTA+CGG | 0.557769 | 8.3:+454050 | MS.gene042072:CDS |
| TGTTGGAATTCCTAAAACAG+TGG | 0.558287 | 8.3:+453546 | MS.gene042072:CDS |
| TAGATCAAGTGGATTTGGGA+AGG | 0.564879 | 8.3:-452405 | None:intergenic |
| TGCAGTGCTTGTAGTTGCCG+AGG | 0.566674 | 8.3:+453846 | MS.gene042072:CDS |
| ATAGGCCTTGTGAAGTTGAT+GGG | 0.567702 | 8.3:+453679 | MS.gene042072:CDS |
| AAAAGATCATAATTGGTCAT+GGG | 0.567773 | 8.3:+454218 | MS.gene042072:CDS |
| ACTGCACGAATCATGTATGT+AGG | 0.577072 | 8.3:-454033 | None:intergenic |
| ACCCTAGTATTGTTCACCAC+TGG | 0.578946 | 8.3:+452729 | MS.gene042072:CDS |
| TGGTGGGACAGGGACCATCC+TGG | 0.579487 | 8.3:+453982 | MS.gene042072:CDS |
| GTAGAAGTGTTGGAGTTGGG+GGG | 0.580821 | 8.3:-452444 | None:intergenic |
| GTTTCTTGACCAACGACTGA+AGG | 0.583428 | 8.3:+453813 | MS.gene042072:CDS |
| AGTCAGAGCTGAAGAAATGG+TGG | 0.587927 | 8.3:+453965 | MS.gene042072:CDS |
| GGTATCACCGCTGGTTACAG+AGG | 0.588696 | 8.3:+452668 | MS.gene042072:CDS |
| GCAGTGCTTGTAGTTGCCGA+GGG | 0.592925 | 8.3:+453847 | MS.gene042072:CDS |
| GGTGGAGATGGGACTATGCG+AGG | 0.594506 | 8.3:+453472 | MS.gene042072:CDS |
| TCTTGAGGTTGGAGATGTAG+TGG | 0.595437 | 8.3:-452382 | None:intergenic |
| GTGGAGATGGGACTATGCGA+GGG | 0.599425 | 8.3:+453473 | MS.gene042072:CDS |
| GTTCTTCAGACTTCTAGAGG+TGG | 0.602049 | 8.3:+452770 | MS.gene042072:CDS |
| TTTACTTGGAAGGAAAAGGA+GGG | 0.603614 | 8.3:+453782 | MS.gene042072:CDS |
| AATCGGTGCTGCTCATGTGG+AGG | 0.603746 | 8.3:+453636 | MS.gene042072:CDS |
| GCTGAAGAAATGGTGGGACA+GGG | 0.604170 | 8.3:+453972 | MS.gene042072:CDS |
| AAAACAGTGGATAATGATGT+GGG | 0.607749 | 8.3:+453559 | MS.gene042072:CDS |
| TGTACATTATAGGTGGAGAT+GGG | 0.608105 | 8.3:+453461 | MS.gene042072:CDS |
| CACCACTGGCATACCAAAGG+TGG | 0.610272 | 8.3:+452743 | MS.gene042072:CDS |
| TTGACTGTAAATAGCTCACC+AGG | 0.616449 | 8.3:-454000 | None:intergenic |
| CAACAGGTGTACATTATAGG+TGG | 0.618654 | 8.3:+453454 | MS.gene042072:intron |
| GCCAGTGGTGAACAATACTA+GGG | 0.620862 | 8.3:-452730 | None:intergenic |
| TTGAAGAAGACGCTGTTGCG+AGG | 0.623813 | 8.3:-452527 | None:intergenic |
| TATACCGTTAACTGCACTCT+CGG | 0.626708 | 8.3:-453659 | None:intergenic |
| TTCGACCCATCAACTTCACA+AGG | 0.629286 | 8.3:-453684 | None:intergenic |
| CTAGGGTTGAGCTGAACCAA+CGG | 0.632100 | 8.3:-452713 | None:intergenic |
| GAGATGTAGTGGTTGAGATG+AGG | 0.632753 | 8.3:-452371 | None:intergenic |
| CTGTAAATAGCTCACCAGGA+TGG | 0.636294 | 8.3:-453996 | None:intergenic |
| GCACATGCTACATCTTCCAG+TGG | 0.639068 | 8.3:-454177 | None:intergenic |
| GCTGCTATTGTAACATGCGG+TGG | 0.641272 | 8.3:+452566 | MS.gene042072:CDS |
| GTTCACCACTGGCATACCAA+AGG | 0.645345 | 8.3:+452740 | MS.gene042072:CDS |
| GTCAGAGCTGAAGAAATGGT+GGG | 0.650633 | 8.3:+453966 | MS.gene042072:CDS |
| TAGCAGCTCTTACATCAGAA+GGG | 0.652881 | 8.3:-452550 | None:intergenic |
| TGGTCTTTGGGATCTCTACG+GGG | 0.653652 | 8.3:+452631 | MS.gene042072:CDS |
| TTAGGCAGCAATCAACGTCA+CGG | 0.665680 | 8.3:-453744 | None:intergenic |
| TACCACCTTTGGTATGCCAG+TGG | 0.676671 | 8.3:-452745 | None:intergenic |
| TGGAGATGGGACTATGCGAG+GGG | 0.690556 | 8.3:+453474 | MS.gene042072:CDS |
| GTAAAAGCCTCTGTAACCAG+CGG | 0.697919 | 8.3:-452675 | None:intergenic |
| GCTGCGATAAGCGAAGCGTG+TGG | 0.702419 | 8.3:-452498 | None:intergenic |
| GTGTGGAGTGAGAGAAAACG+AGG | 0.714528 | 8.3:-452481 | None:intergenic |
| AGAGCTGCTATTGTAACATG+CGG | 0.761108 | 8.3:+452563 | MS.gene042072:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACCAAAATATAAAATGAA+AGG | + | chr8.3:452913-452932 | MS.gene042072:intron | 15.0% |
| !! | TTAATACAAAAGATCATAAT+TGG | + | chr8.3:454211-454230 | MS.gene042072:CDS | 15.0% |
| !! | AAGATTCAAGTAAATTGTAA+TGG | - | chr8.3:453185-453204 | None:intergenic | 20.0% |
| !!! | AAGCCTTTCATTTTATATTT+TGG | - | chr8.3:452919-452938 | None:intergenic | 20.0% |
| !!! | TATGATCTTTTGTATTAACT+GGG | - | chr8.3:454209-454228 | None:intergenic | 20.0% |
| !!! | TTATGATCTTTTGTATTAAC+TGG | - | chr8.3:454210-454229 | None:intergenic | 20.0% |
| ! | AAAAGATCATAATTGGTCAT+GGG | + | chr8.3:454218-454237 | MS.gene042072:CDS | 25.0% |
| ! | ATAATTGTGTTACATCTTCA+AGG | - | chr8.3:452325-452344 | None:intergenic | 25.0% |
| ! | ATAGTTAAGGTGAAAATACA+AGG | - | chr8.3:453236-453255 | None:intergenic | 25.0% |
| ! | TAATTTGGAAGAAACACATA+AGG | - | chr8.3:453325-453344 | None:intergenic | 25.0% |
| ! | TATGCATAATTGCCATTAAT+AGG | - | chr8.3:454153-454172 | None:intergenic | 25.0% |
| !! | GAATTTGAGATGAATAGTTA+AGG | - | chr8.3:453249-453268 | None:intergenic | 25.0% |
| !! | TAATTTGTATTGTACACTCT+TGG | + | chr8.3:454074-454093 | MS.gene042072:CDS | 25.0% |
| !! | TTTAACTTTATTGCTGCAAA+GGG | - | chr8.3:453055-453074 | None:intergenic | 25.0% |
| AAAACAGTGGATAATGATGT+GGG | + | chr8.3:453559-453578 | MS.gene042072:CDS | 30.0% | |
| AACAACAAGCTCTCTAATAA+CGG | - | chr8.3:452612-452631 | None:intergenic | 30.0% | |
| AATAAATAAGAGCTACTCGA+TGG | + | chr8.3:453117-453136 | MS.gene042072:intron | 30.0% | |
| ATTTCAAACAGCAGTTGAAA+TGG | + | chr8.3:453603-453622 | MS.gene042072:CDS | 30.0% | |
| CAAAAGATCATAATTGGTCA+TGG | + | chr8.3:454217-454236 | MS.gene042072:CDS | 30.0% | |
| GTTATAAGATGAGCAATGAA+AGG | - | chr8.3:452992-453011 | None:intergenic | 30.0% | |
| TAAAACAGTGGATAATGATG+TGG | + | chr8.3:453558-453577 | MS.gene042072:CDS | 30.0% | |
| TTAACTTTATTGCTGCAAAG+GGG | - | chr8.3:453054-453073 | None:intergenic | 30.0% | |
| ! | AAAAATCTAGTTCAGGGATT+AGG | - | chr8.3:453765-453784 | None:intergenic | 30.0% |
| ! | ACATCATTATCCACTGTTTT+AGG | - | chr8.3:453559-453578 | None:intergenic | 30.0% |
| ! | CCAAGTAAAAATCTAGTTCA+GGG | - | chr8.3:453771-453790 | None:intergenic | 30.0% |
| ! | GAACTAGATTTTTACTTGGA+AGG | + | chr8.3:453772-453791 | MS.gene042072:CDS | 30.0% |
| ! | GATTTTTACTTGGAAGGAAA+AGG | + | chr8.3:453778-453797 | MS.gene042072:CDS | 30.0% |
| ! | GTTTAACTTTATTGCTGCAA+AGG | - | chr8.3:453056-453075 | None:intergenic | 30.0% |
| ! | TCCAAGTAAAAATCTAGTTC+AGG | - | chr8.3:453772-453791 | None:intergenic | 30.0% |
| !!! | AGGAAGATCTTTTAGCTTAA+TGG | - | chr8.3:452354-452373 | None:intergenic | 30.0% |
| !!! | GGAAGATCTTTTAGCTTAAT+GGG | - | chr8.3:452353-452372 | None:intergenic | 30.0% |
| AAACTGAATGTTGCAGTTGT+TGG | + | chr8.3:453529-453548 | MS.gene042072:CDS | 35.0% | |
| AACTCAACAATACTTCTGCT+TGG | + | chr8.3:453073-453092 | MS.gene042072:intron | 35.0% | |
| AAGTAAGGGTTTAGATCAAG+TGG | - | chr8.3:452419-452438 | None:intergenic | 35.0% | |
| AATTATCCGTAGCATTTGCA+TGG | - | chr8.3:454059-454078 | None:intergenic | 35.0% | |
| ACTCCAACATCTAAGAAAAC+TGG | - | chr8.3:453937-453956 | None:intergenic | 35.0% | |
| CAATTATGCATACATTCCAC+TGG | + | chr8.3:454161-454180 | MS.gene042072:CDS | 35.0% | |
| CTCCAACATCTAAGAAAACT+GGG | - | chr8.3:453936-453955 | None:intergenic | 35.0% | |
| CTGTTCTTGGTATTATATCC+TGG | - | chr8.3:453879-453898 | None:intergenic | 35.0% | |
| GTGTTTCTTCCAAATTAAGC+TGG | + | chr8.3:453328-453347 | MS.gene042072:intron | 35.0% | |
| TAAAGTCAGAGCTGAAGAAA+TGG | + | chr8.3:453962-453981 | MS.gene042072:CDS | 35.0% | |
| TGTACATTATAGGTGGAGAT+GGG | + | chr8.3:453461-453480 | MS.gene042072:CDS | 35.0% | |
| TGTTGGAATTCCTAAAACAG+TGG | + | chr8.3:453546-453565 | MS.gene042072:CDS | 35.0% | |
| TTGGAAGAAACACATAAGGA+AGG | - | chr8.3:453321-453340 | None:intergenic | 35.0% | |
| TTTACTTGGAAGGAAAAGGA+GGG | + | chr8.3:453782-453801 | MS.gene042072:CDS | 35.0% | |
| TTTGTTGCTGGTCCTATTAA+TGG | + | chr8.3:454138-454157 | MS.gene042072:CDS | 35.0% | |
| ! | AACCCAGTTTTCTTAGATGT+TGG | + | chr8.3:453931-453950 | MS.gene042072:CDS | 35.0% |
| ! | ATTGAAGCCTTGATTTTGGA+TGG | - | chr8.3:452822-452841 | None:intergenic | 35.0% |
| ! | ATTTTCCAGCCAGCTTAATT+TGG | - | chr8.3:453340-453359 | None:intergenic | 35.0% |
| ! | CCCTGAACTAGATTTTTACT+TGG | + | chr8.3:453768-453787 | MS.gene042072:CDS | 35.0% |
| ! | GGAATAATCGACAGATCTTT+TGG | + | chr8.3:453580-453599 | MS.gene042072:CDS | 35.0% |
| ! | GGTTTAGATCAAGTGGATTT+GGG | - | chr8.3:452412-452431 | None:intergenic | 35.0% |
| ! | TTAAGGTGATGTAGAAGTGT+TGG | - | chr8.3:452457-452476 | None:intergenic | 35.0% |
| ! | TTTTACTTGGAAGGAAAAGG+AGG | + | chr8.3:453781-453800 | MS.gene042072:CDS | 35.0% |
| ! | TTTTCTTAGATGTTGGAGTG+TGG | + | chr8.3:453938-453957 | MS.gene042072:CDS | 35.0% |
| !! | GTTATTAGAGAGCTTGTTGT+TGG | + | chr8.3:452611-452630 | MS.gene042072:CDS | 35.0% |
| AAGAGCTACTCGATGGAATA+TGG | + | chr8.3:453124-453143 | MS.gene042072:intron | 40.0% | |
| ACCAACGACTGAAGGAAAAT+GGG | + | chr8.3:453821-453840 | MS.gene042072:CDS | 40.0% | |
| ACCAAGAACAGAGTCACAAA+AGG | + | chr8.3:453888-453907 | MS.gene042072:CDS | 40.0% | |
| ACTGCACGAATCATGTATGT+AGG | - | chr8.3:454036-454055 | None:intergenic | 40.0% | |
| ACTGTTCTTCAGACTTCTAG+AGG | + | chr8.3:452767-452786 | MS.gene042072:CDS | 40.0% | |
| AGAGAAAACGAGGTCGTTTA+AGG | - | chr8.3:452474-452493 | None:intergenic | 40.0% | |
| AGAGCTGCTATTGTAACATG+CGG | + | chr8.3:452563-452582 | MS.gene042072:CDS | 40.0% | |
| ATAGCAGCTCTTACATCAGA+AGG | - | chr8.3:452554-452573 | None:intergenic | 40.0% | |
| CAACAGGTGTACATTATAGG+TGG | + | chr8.3:453454-453473 | MS.gene042072:intron | 40.0% | |
| CCAAAATCAAGGCTTCAATC+AGG | + | chr8.3:452823-452842 | MS.gene042072:CDS | 40.0% | |
| CGTCAACAGGTGTACATTAT+AGG | + | chr8.3:453451-453470 | MS.gene042072:intron | 40.0% | |
| CTTGTCCTGTAAAGTTTAGC+AGG | + | chr8.3:453272-453291 | MS.gene042072:intron | 40.0% | |
| GGAGTGATATCTGAATTGCA+CGG | - | chr8.3:453300-453319 | None:intergenic | 40.0% | |
| GTGTACATTATAGGTGGAGA+TGG | + | chr8.3:453460-453479 | MS.gene042072:CDS | 40.0% | |
| GTTGATGCCATCCAAAATCA+AGG | + | chr8.3:452812-452831 | MS.gene042072:CDS | 40.0% | |
| TAGCAGCTCTTACATCAGAA+GGG | - | chr8.3:452553-452572 | None:intergenic | 40.0% | |
| TATACCGTTAACTGCACTCT+CGG | - | chr8.3:453662-453681 | None:intergenic | 40.0% | |
| TTCTTCCAAATTAAGCTGGC+TGG | + | chr8.3:453332-453351 | MS.gene042072:intron | 40.0% | |
| TTGACTGTAAATAGCTCACC+AGG | - | chr8.3:454003-454022 | None:intergenic | 40.0% | |
| ! | ATAGGCCTTGTGAAGTTGAT+GGG | + | chr8.3:453679-453698 | MS.gene042072:CDS | 40.0% |
| ! | CCTGATTGAAGCCTTGATTT+TGG | - | chr8.3:452826-452845 | None:intergenic | 40.0% |
| ! | CTCTGCAATTCATGGTGTTA+TGG | + | chr8.3:454101-454120 | MS.gene042072:CDS | 40.0% |
| ! | GGGTTTAGATCAAGTGGATT+TGG | - | chr8.3:452413-452432 | None:intergenic | 40.0% |
| ! | TACGGGGTTAGACAGATTTT+TGG | + | chr8.3:452647-452666 | MS.gene042072:CDS | 40.0% |
| ! | TAGATCAAGTGGATTTGGGA+AGG | - | chr8.3:452408-452427 | None:intergenic | 40.0% |
| ! | TATAGGCCTTGTGAAGTTGA+TGG | + | chr8.3:453678-453697 | MS.gene042072:CDS | 40.0% |
| ! | TCCTTTTGTGACTCTGTTCT+TGG | - | chr8.3:453892-453911 | None:intergenic | 40.0% |
| !! | AGAGCTTGTTGTTGGTCTTT+GGG | + | chr8.3:452619-452638 | MS.gene042072:CDS | 40.0% |
| !! | ATGTAGAAGTGTTGGAGTTG+GGG | - | chr8.3:452449-452468 | None:intergenic | 40.0% |
| !! | CACTCGGTTGATAGATAGAT+AGG | - | chr8.3:452955-452974 | None:intergenic | 40.0% |
| !! | CGGTTGATAGATAGATAGGA+AGG | - | chr8.3:452951-452970 | None:intergenic | 40.0% |
| !! | CTTCAGAAAATCGGGTTGAT+TGG | - | chr8.3:454256-454275 | None:intergenic | 40.0% |
| !! | GATGTAGAAGTGTTGGAGTT+GGG | - | chr8.3:452450-452469 | None:intergenic | 40.0% |
| !! | GGATATACTGGATTTGTTGC+TGG | + | chr8.3:454126-454145 | MS.gene042072:CDS | 40.0% |
| !! | TGATGTAGAAGTGTTGGAGT+TGG | - | chr8.3:452451-452470 | None:intergenic | 40.0% |
| AAGGAAGAGCGAGATGAATC+TGG | + | chr8.3:453907-453926 | MS.gene042072:CDS | 45.0% | |
| ACCCTAGTATTGTTCACCAC+TGG | + | chr8.3:452729-452748 | MS.gene042072:CDS | 45.0% | |
| AGTCAGAGCTGAAGAAATGG+TGG | + | chr8.3:453965-453984 | MS.gene042072:CDS | 45.0% | |
| ATCATCCTGTTCTCGTCAAC+AGG | + | chr8.3:453438-453457 | MS.gene042072:intron | 45.0% | |
| ATTTGGGAAGGTCTTGAGGT+TGG | - | chr8.3:452396-452415 | None:intergenic | 45.0% | |
| CGGTTCCTGCTAAACTTTAC+AGG | - | chr8.3:453280-453299 | None:intergenic | 45.0% | |
| CTCTTCTTCTACTCAACCGT+TGG | + | chr8.3:452697-452716 | MS.gene042072:CDS | 45.0% | |
| CTGAAGAACAGTACCACCTT+TGG | - | chr8.3:452759-452778 | None:intergenic | 45.0% | |
| CTGTAAATAGCTCACCAGGA+TGG | - | chr8.3:453999-454018 | None:intergenic | 45.0% | |
| GAAATGGCTCAGCAAGCAAT+CGG | + | chr8.3:453619-453638 | MS.gene042072:CDS | 45.0% | |
| GACCAACGACTGAAGGAAAA+TGG | + | chr8.3:453820-453839 | MS.gene042072:CDS | 45.0% | |
| GAGATGTAGTGGTTGAGATG+AGG | - | chr8.3:452374-452393 | None:intergenic | 45.0% | |
| GCCAGTGGTGAACAATACTA+GGG | - | chr8.3:452733-452752 | None:intergenic | 45.0% | |
| GCGAAACTCACAACACAAAC+TGG | + | chr8.3:452861-452880 | MS.gene042072:intron | 45.0% | |
| GGCATCAGCAAAGAATCACT+CGG | - | chr8.3:452971-452990 | None:intergenic | 45.0% | |
| GTAAAAGCCTCTGTAACCAG+CGG | - | chr8.3:452678-452697 | None:intergenic | 45.0% | |
| GTCAGAGCTGAAGAAATGGT+GGG | + | chr8.3:453966-453985 | MS.gene042072:CDS | 45.0% | |
| GTTTCTTGACCAACGACTGA+AGG | + | chr8.3:453813-453832 | MS.gene042072:CDS | 45.0% | |
| TCTTGAGGTTGGAGATGTAG+TGG | - | chr8.3:452385-452404 | None:intergenic | 45.0% | |
| TGCAGTCCATGCAAATGCTA+CGG | + | chr8.3:454050-454069 | MS.gene042072:CDS | 45.0% | |
| TGCCAGTGGTGAACAATACT+AGG | - | chr8.3:452734-452753 | None:intergenic | 45.0% | |
| TTAGGCAGCAATCAACGTCA+CGG | - | chr8.3:453747-453766 | None:intergenic | 45.0% | |
| TTCGACCCATCAACTTCACA+AGG | - | chr8.3:453687-453706 | None:intergenic | 45.0% | |
| TTGGCACACTCTGCAATTCA+TGG | + | chr8.3:454093-454112 | MS.gene042072:CDS | 45.0% | |
| ! | AGAGGCATACAGTGTTACAG+AGG | - | chr8.3:453028-453047 | None:intergenic | 45.0% |
| ! | CTAATAACGGTGTTGAGTCC+AGG | - | chr8.3:452599-452618 | None:intergenic | 45.0% |
| ! | GAGAGTGCAGTTAACGGTAT+AGG | + | chr8.3:453661-453680 | MS.gene042072:CDS | 45.0% |
| ! | GGTGTTATGGCTGGATATAC+TGG | + | chr8.3:454114-454133 | MS.gene042072:CDS | 45.0% |
| ! | GTTCTTCAGACTTCTAGAGG+TGG | + | chr8.3:452770-452789 | MS.gene042072:CDS | 45.0% |
| !! | GAGAGCTTGTTGTTGGTCTT+TGG | + | chr8.3:452618-452637 | MS.gene042072:CDS | 45.0% |
| !! | GCAATTCATGGTGTTATGGC+TGG | + | chr8.3:454105-454124 | MS.gene042072:CDS | 45.0% |
| !! | GTTGGTCTTTGGGATCTCTA+CGG | + | chr8.3:452629-452648 | MS.gene042072:CDS | 45.0% |
| !! | TGTAGAAGTGTTGGAGTTGG+GGG | - | chr8.3:452448-452467 | None:intergenic | 45.0% |
| !! | TTGGTCTTTGGGATCTCTAC+GGG | + | chr8.3:452630-452649 | MS.gene042072:CDS | 45.0% |
| !!! | CAGATTTTTGGTATCACCGC+TGG | + | chr8.3:452659-452678 | MS.gene042072:CDS | 45.0% |
| ATTGCTGCAAAGGGGAAGAG+AGG | - | chr8.3:453046-453065 | None:intergenic | 50.0% | |
| CTAGGGTTGAGCTGAACCAA+CGG | - | chr8.3:452716-452735 | None:intergenic | 50.0% | |
| GCACATGCTACATCTTCCAG+TGG | - | chr8.3:454180-454199 | None:intergenic | 50.0% | |
| GCTGCTATTGTAACATGCGG+TGG | + | chr8.3:452566-452585 | MS.gene042072:CDS | 50.0% | |
| GGCATACAGTGTTACAGAGG+TGG | - | chr8.3:453025-453044 | None:intergenic | 50.0% | |
| GTACACCTGTTGACGAGAAC+AGG | - | chr8.3:453446-453465 | None:intergenic | 50.0% | |
| GTGGATTTGGGAAGGTCTTG+AGG | - | chr8.3:452400-452419 | None:intergenic | 50.0% | |
| GTGTGGAGTGAGAGAAAACG+AGG | - | chr8.3:452484-452503 | None:intergenic | 50.0% | |
| GTTCACCACTGGCATACCAA+AGG | + | chr8.3:452740-452759 | MS.gene042072:CDS | 50.0% | |
| TACCACCTTTGGTATGCCAG+TGG | - | chr8.3:452748-452767 | None:intergenic | 50.0% | |
| TTGAAGAAGACGCTGTTGCG+AGG | - | chr8.3:452530-452549 | None:intergenic | 50.0% | |
| ! | AGCTGAAGAAATGGTGGGAC+AGG | + | chr8.3:453971-453990 | MS.gene042072:CDS | 50.0% |
| ! | GCCCATTTTCCTTCAGTCGT+TGG | - | chr8.3:453825-453844 | None:intergenic | 50.0% |
| ! | GCTGAAGAAATGGTGGGACA+GGG | + | chr8.3:453972-453991 | MS.gene042072:CDS | 50.0% |
| !! | AAGTTGATGGGTCGAAGCAC+AGG | + | chr8.3:453691-453710 | MS.gene042072:CDS | 50.0% |
| !! | GTAGAAGTGTTGGAGTTGGG+GGG | - | chr8.3:452447-452466 | None:intergenic | 50.0% |
| !! | TGGTCTTTGGGATCTCTACG+GGG | + | chr8.3:452631-452650 | MS.gene042072:CDS | 50.0% |
| CACCACTGGCATACCAAAGG+TGG | + | chr8.3:452743-452762 | MS.gene042072:CDS | 55.0% | |
| GCAGTGCTTGTAGTTGCCGA+GGG | + | chr8.3:453847-453866 | MS.gene042072:CDS | 55.0% | |
| GTGGAGATGGGACTATGCGA+GGG | + | chr8.3:453473-453492 | MS.gene042072:CDS | 55.0% | |
| TATATCCTGGCCAGCACCCT+CGG | - | chr8.3:453866-453885 | None:intergenic | 55.0% | |
| TGCAGTGCTTGTAGTTGCCG+AGG | + | chr8.3:453846-453865 | MS.gene042072:CDS | 55.0% | |
| TGGAGATGGGACTATGCGAG+GGG | + | chr8.3:453474-453493 | MS.gene042072:CDS | 55.0% | |
| ! | AGTTGGGGGGTGTGGAAGTA+AGG | - | chr8.3:452434-452453 | None:intergenic | 55.0% |
| ! | GAGGCCGAGAGTGCAGTTAA+CGG | + | chr8.3:453655-453674 | MS.gene042072:CDS | 55.0% |
| ! | GGTATCACCGCTGGTTACAG+AGG | + | chr8.3:452668-452687 | MS.gene042072:CDS | 55.0% |
| ! | GTTGGGGGGTGTGGAAGTAA+GGG | - | chr8.3:452433-452452 | None:intergenic | 55.0% |
| !! | AATCGGTGCTGCTCATGTGG+AGG | + | chr8.3:453636-453655 | MS.gene042072:CDS | 55.0% |
| !! | AGCAATCGGTGCTGCTCATG+TGG | + | chr8.3:453633-453652 | MS.gene042072:CDS | 55.0% |
| ACATGCGGTGGTCTCTGTCC+TGG | + | chr8.3:452578-452597 | MS.gene042072:CDS | 60.0% | |
| GAAGACGCTGTTGCGAGGAC+CGG | - | chr8.3:452525-452544 | None:intergenic | 60.0% | |
| GCTGCGATAAGCGAAGCGTG+TGG | - | chr8.3:452501-452520 | None:intergenic | 60.0% | |
| GGTGGAGATGGGACTATGCG+AGG | + | chr8.3:453472-453491 | MS.gene042072:CDS | 60.0% | |
| ! | AGTGTTGGAGTTGGGGGGTG+TGG | - | chr8.3:452442-452461 | None:intergenic | 60.0% |
| ! | CTTGTAGTTGCCGAGGGTGC+TGG | + | chr8.3:453853-453872 | MS.gene042072:CDS | 60.0% |
| CGCTTCGCTTATCGCAGCGC+CGG | + | chr8.3:452503-452522 | MS.gene042072:CDS | 65.0% | |
| TGGTGGGACAGGGACCATCC+TGG | + | chr8.3:453982-454001 | MS.gene042072:CDS | 65.0% | |
| !! | AGTTGCCGAGGGTGCTGGCC+AGG | + | chr8.3:453858-453877 | MS.gene042072:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 452290 | 454281 | 452290 | ID=MS.gene042072 |
| chr8.3 | mRNA | 452290 | 454281 | 452290 | ID=MS.gene042072.t1;Parent=MS.gene042072 |
| chr8.3 | exon | 452290 | 452844 | 452290 | ID=MS.gene042072.t1.exon1;Parent=MS.gene042072.t1 |
| chr8.3 | CDS | 452290 | 452844 | 452290 | ID=cds.MS.gene042072.t1;Parent=MS.gene042072.t1 |
| chr8.3 | exon | 453460 | 454281 | 453460 | ID=MS.gene042072.t1.exon2;Parent=MS.gene042072.t1 |
| chr8.3 | CDS | 453460 | 454281 | 453460 | ID=cds.MS.gene042072.t1;Parent=MS.gene042072.t1 |
| Gene Sequence |
| Protein sequence |
