Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042083.t1 | RHN65114.1 | 77.9 | 561 | 124 | 0 | 1 | 561 | 1 | 561 | 7.20E-177 | 630.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042083.t1 | Q9FWW5 | 37.2 | 333 | 191 | 5 | 5 | 323 | 11 | 339 | 1.9e-37 | 158.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042083.t1 | A0A396ILB0 | 77.9 | 561 | 124 | 0 | 1 | 561 | 1 | 561 | 5.2e-177 | 630.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene042083 | MS.gene72664 | PPI |
| MS.gene042083 | MS.gene045052 | PPI |
| MS.gene042083 | MS.gene36348 | PPI |
| MS.gene042083 | MS.gene86539 | PPI |
| MS.gene042083 | MS.gene76530 | PPI |
| MS.gene042083 | MS.gene070627 | PPI |
| MS.gene042083 | MS.gene069865 | PPI |
| MS.gene64896 | MS.gene042083 | PPI |
| MS.gene85145 | MS.gene042083 | PPI |
| MS.gene042083 | MS.gene021743 | PPI |
| MS.gene042083 | MS.gene65337 | PPI |
| MS.gene042083 | MS.gene85146 | PPI |
| MS.gene042083 | MS.gene79559 | PPI |
| MS.gene36347 | MS.gene042083 | PPI |
| MS.gene042083 | MS.gene86533 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042083.t1 | MTR_4g134110 | 95.544 | 561 | 25 | 0 | 1 | 561 | 1 | 561 | 0.0 | 997 |
| MS.gene042083.t1 | MTR_2g027130 | 58.947 | 570 | 217 | 6 | 2 | 557 | 11 | 577 | 0.0 | 552 |
| MS.gene042083.t1 | MTR_4g133450 | 94.704 | 321 | 17 | 0 | 241 | 561 | 5 | 325 | 0.0 | 537 |
| MS.gene042083.t1 | MTR_3g060660 | 44.723 | 559 | 280 | 10 | 6 | 541 | 14 | 566 | 3.09e-95 | 304 |
| MS.gene042083.t1 | MTR_3g060660 | 42.642 | 530 | 280 | 8 | 30 | 541 | 32 | 555 | 1.20e-79 | 263 |
| MS.gene042083.t1 | MTR_5g096080 | 38.624 | 567 | 311 | 10 | 6 | 543 | 15 | 573 | 5.01e-76 | 254 |
| MS.gene042083.t1 | MTR_3g007920 | 39.115 | 565 | 301 | 9 | 11 | 543 | 20 | 573 | 1.33e-74 | 250 |
| MS.gene042083.t1 | MTR_1g019490 | 26.678 | 596 | 354 | 18 | 5 | 540 | 259 | 831 | 2.04e-14 | 77.0 |
| MS.gene042083.t1 | MTR_3g101660 | 27.090 | 598 | 349 | 21 | 1 | 540 | 281 | 849 | 6.39e-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042083.t1 | AT1G12150 | 46.679 | 557 | 259 | 9 | 5 | 545 | 11 | 545 | 3.68e-124 | 376 |
| MS.gene042083.t1 | AT1G12150 | 46.679 | 557 | 259 | 9 | 5 | 545 | 11 | 545 | 3.68e-124 | 376 |
| MS.gene042083.t1 | AT5G55860 | 40.925 | 562 | 299 | 9 | 6 | 543 | 14 | 566 | 8.04e-79 | 261 |
| MS.gene042083.t1 | AT4G17210 | 32.496 | 557 | 309 | 9 | 7 | 543 | 17 | 526 | 1.50e-59 | 206 |
| MS.gene042083.t1 | AT2G26570 | 27.986 | 586 | 356 | 20 | 2 | 540 | 156 | 722 | 7.13e-21 | 97.4 |
| MS.gene042083.t1 | AT2G26570 | 27.986 | 586 | 356 | 20 | 2 | 540 | 156 | 722 | 7.13e-21 | 97.4 |
| MS.gene042083.t1 | AT4G33390 | 27.288 | 590 | 337 | 17 | 14 | 541 | 156 | 715 | 1.99e-13 | 73.9 |
Find 95 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATCATATTCATTCTTTA+AGG | 0.132312 | 8.3:+529197 | None:intergenic |
| TTGTTTCCTCAACAGCTTTC+AGG | 0.144522 | 8.3:+528407 | None:intergenic |
| CAAGTTTCGCGTCTAGATTT+TGG | 0.198421 | 8.3:+529163 | None:intergenic |
| AAAGCTGCTGTTAGTTTATT+TGG | 0.205244 | 8.3:-530227 | MS.gene042083:CDS |
| GATAATCTTCATCTCTTTAA+TGG | 0.206604 | 8.3:+528624 | None:intergenic |
| AGCCTTTCTGCTCATCTCTT+TGG | 0.236137 | 8.3:+528759 | None:intergenic |
| GGCAAAGCTAGCAGCATTGC+AGG | 0.267141 | 8.3:-529397 | MS.gene042083:CDS |
| CTCAATCTCTGCACTTGTTT+CGG | 0.295156 | 8.3:+529140 | None:intergenic |
| GGCTGAAGCTGTGAGGAATA+AGG | 0.309488 | 8.3:-529583 | MS.gene042083:CDS |
| ACCCTATCCCTAAAAGTTAT+AGG | 0.313601 | 8.3:-529543 | MS.gene042083:CDS |
| CGGCAATTGAACGTGAATTA+AGG | 0.320877 | 8.3:-528330 | MS.gene042083:CDS |
| CTGTCTCCGATTGTAGCTTC+TGG | 0.322489 | 8.3:+528800 | None:intergenic |
| CGCTTTGATTGCTGATTCCT+TGG | 0.325341 | 8.3:+529605 | None:intergenic |
| GAGAAAATACTAGCTTCTTA+AGG | 0.329746 | 8.3:+528998 | None:intergenic |
| CTGCTTCTTCAGCCGCTGCT+CGG | 0.339770 | 8.3:+528707 | None:intergenic |
| AACATCCTGCAGTGTCTTTG+TGG | 0.340359 | 8.3:+529038 | None:intergenic |
| CTCTCGATTTCAAAATTTAG+TGG | 0.349735 | 8.3:-528583 | MS.gene042083:CDS |
| GTGCTCTATCGATGCTTTCA+TGG | 0.374865 | 8.3:+529302 | None:intergenic |
| TAACAGCAGCTTTGACAGAT+TGG | 0.377262 | 8.3:+530237 | None:intergenic |
| TTCTCTCACATTGTTCAGCT+TGG | 0.378811 | 8.3:+529629 | None:intergenic |
| GGCAAAAGCAGCAGAACAAA+AGG | 0.397186 | 8.3:-528647 | MS.gene042083:CDS |
| AGCAAGAACTCACGAAAATC+AGG | 0.398382 | 8.3:-529443 | MS.gene042083:CDS |
| AGAAAATACTAGCTTCTTAA+GGG | 0.410056 | 8.3:+528999 | None:intergenic |
| TGCTTCTTCAGCCGCTGCTC+GGG | 0.410829 | 8.3:+528708 | None:intergenic |
| CAAACTCTCAAGGGTCTCCT+TGG | 0.423083 | 8.3:+529656 | None:intergenic |
| CTAGCAGCATTGCAGGCAAC+AGG | 0.427240 | 8.3:-529390 | MS.gene042083:CDS |
| ATCGGTGAAGATGTACTATC+AGG | 0.427441 | 8.3:+528295 | None:intergenic |
| AGTGAAGGAATACCAAGAAT+TGG | 0.430131 | 8.3:-528515 | MS.gene042083:CDS |
| GCTGAAGCTGTGAGGAATAA+GGG | 0.430229 | 8.3:-529582 | MS.gene042083:CDS |
| CAAAATTTAGTGGTAAGATC+AGG | 0.437222 | 8.3:-528573 | MS.gene042083:CDS |
| TTATCTGAACAATCTGATAT+CGG | 0.442943 | 8.3:+528277 | None:intergenic |
| CTGCAAAATTTAACTCAGAA+AGG | 0.449552 | 8.3:-529353 | MS.gene042083:CDS |
| AGAAAGTGCTTTAACTTTCG+TGG | 0.460333 | 8.3:+529692 | None:intergenic |
| AAAGAAAGAGGCAGCTATCA+TGG | 0.460393 | 8.3:-528488 | MS.gene042083:CDS |
| CGAAACAAGTGCAGAGATTG+AGG | 0.462554 | 8.3:-529139 | MS.gene042083:CDS |
| TTGCTTGGAAGAATCTAGTT+CGG | 0.465635 | 8.3:+529461 | None:intergenic |
| CTGCAATGGAGACGGCTTTG+TGG | 0.473961 | 8.3:-528381 | MS.gene042083:CDS |
| GAAGAGGCGGGGCCTCAGCC+AGG | 0.487515 | 8.3:-528865 | MS.gene042083:CDS |
| ATCTCTCCAACCTCTCCCCT+TGG | 0.489793 | 8.3:+530278 | None:intergenic |
| AAAGCTTCATGCTTCCAAGA+TGG | 0.490345 | 8.3:-529097 | MS.gene042083:CDS |
| AGAGATGAGCAGAAAGGCTC+AGG | 0.494120 | 8.3:-528755 | MS.gene042083:CDS |
| GCATCCACGGTACCTGGCTG+AGG | 0.500220 | 8.3:+528853 | None:intergenic |
| GGCTTTGTGGTATGCAGAGA+AGG | 0.504032 | 8.3:-528368 | MS.gene042083:CDS |
| GATTCTCCAAGGGGAGAGGT+TGG | 0.507507 | 8.3:-530284 | MS.gene042083:CDS |
| GAAGAGTTTGAGTCACTGAA+TGG | 0.508477 | 8.3:-528541 | MS.gene042083:CDS |
| GCTTGGTTGTCAAACTCTCA+AGG | 0.509583 | 8.3:+529646 | None:intergenic |
| TCTGCAGAATGTATTTGAAA+AGG | 0.511045 | 8.3:-529781 | MS.gene042083:intron |
| AAGTTTCACAGAATCCATCT+TGG | 0.515653 | 8.3:+529083 | None:intergenic |
| TTGACAGCGAATCTGTCCTT+AGG | 0.517593 | 8.3:+530191 | None:intergenic |
| ACATTGGCATCCACGGTACC+TGG | 0.522638 | 8.3:+528847 | None:intergenic |
| AAAGGAGACACAGCTTATCC+TGG | 0.526439 | 8.3:-529763 | MS.gene042083:CDS |
| GGGTCTCCTTGGCCTTCTCA+AGG | 0.530193 | 8.3:+529667 | None:intergenic |
| TGAGGAAACAAAGGCTGCAA+TGG | 0.535827 | 8.3:-528395 | MS.gene042083:CDS |
| TAAAATCCAGAAGCTACAAT+CGG | 0.536535 | 8.3:-528806 | MS.gene042083:CDS |
| TGGTGAAGTAGCAGTTCCTA+AGG | 0.542024 | 8.3:-530207 | MS.gene042083:CDS |
| AGCTAACCTGAAAGCTGTTG+AGG | 0.545144 | 8.3:-528413 | MS.gene042083:CDS |
| AAGTTATAGGATATGAAGCT+TGG | 0.546034 | 8.3:-529530 | MS.gene042083:CDS |
| GAGCAAAGATATGAGAAAGG+TGG | 0.550127 | 8.3:-530306 | None:intergenic |
| TTAGAGCAAAGATATGAGAA+AGG | 0.552619 | 8.3:-530309 | None:intergenic |
| GAAAGAGCAAGATGAGCTGA+AGG | 0.554843 | 8.3:-528950 | MS.gene042083:CDS |
| AGCTGAAGCATCCCGAGCAG+CGG | 0.556164 | 8.3:-528719 | MS.gene042083:CDS |
| TTCTGACCTTGAGAAGGCCA+AGG | 0.559843 | 8.3:-529673 | MS.gene042083:CDS |
| AACAAAGGCTGCAATGGAGA+CGG | 0.559947 | 8.3:-528389 | MS.gene042083:CDS |
| AGCACTTTCTGACCTTGAGA+AGG | 0.565647 | 8.3:-529679 | MS.gene042083:CDS |
| GGTGGATTCTCCAAGGGGAG+AGG | 0.568728 | 8.3:-530288 | MS.gene042083:CDS |
| AAAAGAGCGCGGAAGAGGCG+GGG | 0.571475 | 8.3:-528876 | MS.gene042083:CDS |
| AAGAAACGAGTACACGACTA+AGG | 0.572909 | 8.3:-529487 | MS.gene042083:CDS |
| AGCCAAAGAGATGAGCAGAA+AGG | 0.575074 | 8.3:-528761 | MS.gene042083:CDS |
| GAACAATGTGAGAGAATCCA+AGG | 0.577444 | 8.3:-529622 | MS.gene042083:CDS |
| GTCACTGAATGGAAAAGTGA+AGG | 0.582811 | 8.3:-528530 | MS.gene042083:CDS |
| GATCTTGCTTCTAACCTCAC+TGG | 0.583636 | 8.3:-528907 | MS.gene042083:CDS |
| CTTGGTTGTCAAACTCTCAA+GGG | 0.592536 | 8.3:+529647 | None:intergenic |
| AGAATTGGCAGAAAAGAAAG+AGG | 0.594912 | 8.3:-528500 | MS.gene042083:CDS |
| GTAGAAGACATTGGCATCCA+CGG | 0.595783 | 8.3:+528840 | None:intergenic |
| TGAGAAAGGTGGATTCTCCA+AGG | 0.601503 | 8.3:-530295 | MS.gene042083:CDS |
| GAAAGCTGTTGAGGAAACAA+AGG | 0.603568 | 8.3:-528404 | MS.gene042083:CDS |
| GAGAAAGGTGGATTCTCCAA+GGG | 0.604164 | 8.3:-530294 | MS.gene042083:CDS |
| GCTATCATGGCTGAGTTGCA+AGG | 0.607203 | 8.3:-528475 | MS.gene042083:CDS |
| GAAGGCAAATTCTGCAAAAG+CGG | 0.610126 | 8.3:-528350 | MS.gene042083:CDS |
| AAATGAATTAGACATAAAGG+TGG | 0.613977 | 8.3:-528437 | MS.gene042083:CDS |
| AGAACTCACGAAAATCAGGC+AGG | 0.613981 | 8.3:-529439 | MS.gene042083:CDS |
| AGAAGCCACAAAGACACTGC+AGG | 0.623758 | 8.3:-529043 | MS.gene042083:CDS |
| GGGGCCTCAGCCAGGTACCG+TGG | 0.637542 | 8.3:-528857 | MS.gene042083:CDS |
| GGTTGGAGAGATTGACACAA+GGG | 0.639933 | 8.3:-530267 | MS.gene042083:CDS |
| AAATTTAACTCAGAAAGGAT+CGG | 0.640420 | 8.3:-529348 | MS.gene042083:CDS |
| ACTTTGCATGTAGAAGACAT+TGG | 0.657532 | 8.3:+528831 | None:intergenic |
| GCAGCTTTGACAGATTGGAA+TGG | 0.664413 | 8.3:+530242 | None:intergenic |
| AGTTGCAAGGAATGTACACA+AGG | 0.668978 | 8.3:-528462 | MS.gene042083:CDS |
| AGGTTGGAGAGATTGACACA+AGG | 0.675431 | 8.3:-530268 | MS.gene042083:CDS |
| TGTCAAGAGAAGATCGTCAG+AGG | 0.688771 | 8.3:-530174 | MS.gene042083:intron |
| TCAAAGCGGCTGAAGCTGTG+AGG | 0.688806 | 8.3:-529590 | MS.gene042083:CDS |
| AGAAAGGTGGATTCTCCAAG+GGG | 0.690833 | 8.3:-530293 | MS.gene042083:CDS |
| AAGGATCGGTGAGCTCTCAG+AGG | 0.706323 | 8.3:-529334 | MS.gene042083:CDS |
| CGAGAGTCTACTTTGCACGT+CGG | 0.708077 | 8.3:+528600 | None:intergenic |
| CAAGGAATCAGCAATCAAAG+CGG | 0.736218 | 8.3:-529604 | MS.gene042083:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAATTTATACCATAT+TGG | - | chr8.3:528413-528432 | MS.gene042083:CDS | 10.0% |
| !!! | TAACTTACATAATTCTTTTT+GGG | + | chr8.3:528814-528833 | None:intergenic | 15.0% |
| !!! | TTAACTTACATAATTCTTTT+TGG | + | chr8.3:528815-528834 | None:intergenic | 15.0% |
| !! | ATCATCATATTCATTCTTTA+AGG | + | chr8.3:529357-529376 | None:intergenic | 20.0% |
| !! | GAAAAATGAATTAGACATAA+AGG | - | chr8.3:530111-530130 | MS.gene042083:intron | 20.0% |
| !! | GTACAAAAAAAAATCCAATA+TGG | + | chr8.3:528430-528449 | None:intergenic | 20.0% |
| !!! | TTCATATCCTATAACTTTTA+GGG | + | chr8.3:529018-529037 | None:intergenic | 20.0% |
| !!! | TTTTGTACATATTGTTTCAT+AGG | - | chr8.3:528442-528461 | MS.gene042083:CDS | 20.0% |
| ! | AAATGAATTAGACATAAAGG+TGG | - | chr8.3:530114-530133 | MS.gene042083:intron | 25.0% |
| ! | AAATTTAACTCAGAAAGGAT+CGG | - | chr8.3:529203-529222 | MS.gene042083:CDS | 25.0% |
| ! | GATAATCTTCATCTCTTTAA+TGG | + | chr8.3:529930-529949 | None:intergenic | 25.0% |
| ! | TTATCTGAACAATCTGATAT+CGG | + | chr8.3:530277-530296 | None:intergenic | 25.0% |
| !! | AGAAAATACTAGCTTCTTAA+GGG | + | chr8.3:529555-529574 | None:intergenic | 25.0% |
| !! | ATCCTAGACATTTTAAATGT+TGG | - | chr8.3:528529-528548 | MS.gene042083:CDS | 25.0% |
| !! | CTTCATATCCTATAACTTTT+AGG | + | chr8.3:529019-529038 | None:intergenic | 25.0% |
| !! | TTCCAACATTTAAAATGTCT+AGG | + | chr8.3:528534-528553 | None:intergenic | 25.0% |
| !!! | AGTTTTGTAAAAGTCGAATT+GGG | + | chr8.3:529303-529322 | None:intergenic | 25.0% |
| AAACAAGTTTCACACTTCTT+TGG | - | chr8.3:528744-528763 | MS.gene042083:CDS | 30.0% | |
| AAGTTATAGGATATGAAGCT+TGG | - | chr8.3:529021-529040 | MS.gene042083:CDS | 30.0% | |
| CAAAATTTAGTGGTAAGATC+AGG | - | chr8.3:529978-529997 | MS.gene042083:intron | 30.0% | |
| CTCTCGATTTCAAAATTTAG+TGG | - | chr8.3:529968-529987 | MS.gene042083:intron | 30.0% | |
| CTGCAAAATTTAACTCAGAA+AGG | - | chr8.3:529198-529217 | MS.gene042083:CDS | 30.0% | |
| TAAAATCCAGAAGCTACAAT+CGG | - | chr8.3:529745-529764 | MS.gene042083:CDS | 30.0% | |
| TCTGCAGAATGTATTTGAAA+AGG | - | chr8.3:528770-528789 | MS.gene042083:CDS | 30.0% | |
| TGACACACAAACAATACAAA+AGG | - | chr8.3:528621-528640 | MS.gene042083:CDS | 30.0% | |
| ! | AAAGCTGCTGTTAGTTTATT+TGG | - | chr8.3:528324-528343 | MS.gene042083:CDS | 30.0% |
| ! | AAGAAGTGTGAAACTTGTTT+AGG | + | chr8.3:528744-528763 | None:intergenic | 30.0% |
| ! | AGAAGCTAGTATTTTCTCTT+AGG | - | chr8.3:529558-529577 | MS.gene042083:CDS | 30.0% |
| ! | GAGAAAATACTAGCTTCTTA+AGG | + | chr8.3:529556-529575 | None:intergenic | 30.0% |
| !! | ATCCTATAACTTTTAGGGAT+AGG | + | chr8.3:529013-529032 | None:intergenic | 30.0% |
| !! | CAGTTTTGTAAAAGTCGAAT+TGG | + | chr8.3:529304-529323 | None:intergenic | 30.0% |
| !! | GAAAAAGCTAGAACTTGTTT+TGG | - | chr8.3:529868-529887 | MS.gene042083:intron | 30.0% |
| !! | TCCTATAACTTTTAGGGATA+GGG | + | chr8.3:529012-529031 | None:intergenic | 30.0% |
| !!! | TCTAGATTTTGGATTAGTTC+TGG | + | chr8.3:529380-529399 | None:intergenic | 30.0% |
| AAGTTTCACAGAATCCATCT+TGG | + | chr8.3:529471-529490 | None:intergenic | 35.0% | |
| ACCCTATCCCTAAAAGTTAT+AGG | - | chr8.3:529008-529027 | MS.gene042083:CDS | 35.0% | |
| ACTTTGCATGTAGAAGACAT+TGG | + | chr8.3:529723-529742 | None:intergenic | 35.0% | |
| AGAATTGGCAGAAAAGAAAG+AGG | - | chr8.3:530051-530070 | MS.gene042083:intron | 35.0% | |
| AGTGAAGGAATACCAAGAAT+TGG | - | chr8.3:530036-530055 | MS.gene042083:intron | 35.0% | |
| TTCACACAATACCTGATGTT+AGG | - | chr8.3:528593-528612 | MS.gene042083:CDS | 35.0% | |
| TTGCTTGGAAGAATCTAGTT+CGG | + | chr8.3:529093-529112 | None:intergenic | 35.0% | |
| ! | AGAAGAAGCACAGAAAAAAC+TGG | - | chr8.3:529328-529347 | MS.gene042083:CDS | 35.0% |
| ! | CTTTCTTTTCTGCCAATTCT+TGG | + | chr8.3:530051-530070 | None:intergenic | 35.0% |
| ! | TCAGGTATTGTGTGAAACTT+TGG | + | chr8.3:528589-528608 | None:intergenic | 35.0% |
| !! | AGAAAGTGCTTTAACTTTCG+TGG | + | chr8.3:528862-528881 | None:intergenic | 35.0% |
| !! | TACATAATTCTTTTTGGGCC+AGG | + | chr8.3:528809-528828 | None:intergenic | 35.0% |
| !!! | TCTTTTTCAATTCACCAGTG+AGG | + | chr8.3:529661-529680 | None:intergenic | 35.0% |
| AAAGAAAGAGGCAGCTATCA+TGG | - | chr8.3:530063-530082 | MS.gene042083:intron | 40.0% | |
| AAAGCTTCATGCTTCCAAGA+TGG | - | chr8.3:529454-529473 | MS.gene042083:CDS | 40.0% | |
| AAGAAACGAGTACACGACTA+AGG | - | chr8.3:529064-529083 | MS.gene042083:CDS | 40.0% | |
| AGCAAGAACTCACGAAAATC+AGG | - | chr8.3:529108-529127 | MS.gene042083:CDS | 40.0% | |
| AGTTGCAAGGAATGTACACA+AGG | - | chr8.3:530089-530108 | MS.gene042083:intron | 40.0% | |
| ATCGGTGAAGATGTACTATC+AGG | + | chr8.3:530259-530278 | None:intergenic | 40.0% | |
| CAAGGAATCAGCAATCAAAG+CGG | - | chr8.3:528947-528966 | MS.gene042083:CDS | 40.0% | |
| CGGCAATTGAACGTGAATTA+AGG | - | chr8.3:530221-530240 | MS.gene042083:CDS | 40.0% | |
| CTCAATCTCTGCACTTGTTT+CGG | + | chr8.3:529414-529433 | None:intergenic | 40.0% | |
| CTTGGTTGTCAAACTCTCAA+GGG | + | chr8.3:528907-528926 | None:intergenic | 40.0% | |
| GAAAGCTGTTGAGGAAACAA+AGG | - | chr8.3:530147-530166 | MS.gene042083:intron | 40.0% | |
| GAACAATGTGAGAGAATCCA+AGG | - | chr8.3:528929-528948 | MS.gene042083:CDS | 40.0% | |
| GAAGAGTTTGAGTCACTGAA+TGG | - | chr8.3:530010-530029 | MS.gene042083:intron | 40.0% | |
| GAAGGCAAATTCTGCAAAAG+CGG | - | chr8.3:530201-530220 | MS.gene042083:CDS | 40.0% | |
| GTCACTGAATGGAAAAGTGA+AGG | - | chr8.3:530021-530040 | MS.gene042083:intron | 40.0% | |
| GTGTCAAATTGCCTAACATC+AGG | + | chr8.3:528607-528626 | None:intergenic | 40.0% | |
| TGGTGAATTGAAAAAGAGCG+CGG | - | chr8.3:529664-529683 | MS.gene042083:CDS | 40.0% | |
| TTCTCTCACATTGTTCAGCT+TGG | + | chr8.3:528925-528944 | None:intergenic | 40.0% | |
| TTGTTTCCTCAACAGCTTTC+AGG | + | chr8.3:530147-530166 | None:intergenic | 40.0% | |
| ! | AAAGTTTTTCCCATGACGAG+AGG | + | chr8.3:528648-528667 | None:intergenic | 40.0% |
| ! | AAGTTTTTCCCATGACGAGA+GGG | + | chr8.3:528647-528666 | None:intergenic | 40.0% |
| ! | AGAAGCACAGAAAAAACTGG+AGG | - | chr8.3:529331-529350 | MS.gene042083:CDS | 40.0% |
| ! | AGGGATAGGGTCTTTTCAAA+TGG | + | chr8.3:528999-529018 | None:intergenic | 40.0% |
| ! | CAAGTTTCGCGTCTAGATTT+TGG | + | chr8.3:529391-529410 | None:intergenic | 40.0% |
| ! | GATTTTCGTGAGTTCTTGCT+TGG | + | chr8.3:529108-529127 | None:intergenic | 40.0% |
| ! | TAACAGCAGCTTTGACAGAT+TGG | + | chr8.3:528317-528336 | None:intergenic | 40.0% |
| ! | TTGGGTTTCATTTTGTGCAG+AGG | + | chr8.3:529285-529304 | None:intergenic | 40.0% |
| !! | GCAGGATTTTGATGCAGTTT+TGG | - | chr8.3:529130-529149 | MS.gene042083:CDS | 40.0% |
| !! | GGATTTTGATGCAGTTTTGG+AGG | - | chr8.3:529133-529152 | MS.gene042083:CDS | 40.0% |
| !!! | GCTAGAACTTGTTTTGGAAG+AGG | - | chr8.3:529874-529893 | MS.gene042083:intron | 40.0% |
| !!! | TGTTTTGGAAGAGGCTAAAG+AGG | - | chr8.3:529883-529902 | MS.gene042083:intron | 40.0% |
| AAAGGAGACACAGCTTATCC+TGG | - | chr8.3:528788-528807 | MS.gene042083:CDS | 45.0% | |
| AACAAAGGCTGCAATGGAGA+CGG | - | chr8.3:530162-530181 | MS.gene042083:intron | 45.0% | |
| AACATCCTGCAGTGTCTTTG+TGG | + | chr8.3:529516-529535 | None:intergenic | 45.0% | |
| AGAACTCACGAAAATCAGGC+AGG | - | chr8.3:529112-529131 | MS.gene042083:CDS | 45.0% | |
| AGCACTTTCTGACCTTGAGA+AGG | - | chr8.3:528872-528891 | MS.gene042083:CDS | 45.0% | |
| AGCCAAAGAGATGAGCAGAA+AGG | - | chr8.3:529790-529809 | MS.gene042083:intron | 45.0% | |
| AGCCTTTCTGCTCATCTCTT+TGG | + | chr8.3:529795-529814 | None:intergenic | 45.0% | |
| AGCTAACCTGAAAGCTGTTG+AGG | - | chr8.3:530138-530157 | MS.gene042083:intron | 45.0% | |
| AGGTTGGAGAGATTGACACA+AGG | - | chr8.3:528283-528302 | MS.gene042083:CDS | 45.0% | |
| CGAAACAAGTGCAGAGATTG+AGG | - | chr8.3:529412-529431 | MS.gene042083:CDS | 45.0% | |
| GAAAGAGCAAGATGAGCTGA+AGG | - | chr8.3:529601-529620 | MS.gene042083:CDS | 45.0% | |
| GATCTTGCTTCTAACCTCAC+TGG | - | chr8.3:529644-529663 | MS.gene042083:CDS | 45.0% | |
| GCTGAAGCTGTGAGGAATAA+GGG | - | chr8.3:528969-528988 | MS.gene042083:CDS | 45.0% | |
| GCTTGGTTGTCAAACTCTCA+AGG | + | chr8.3:528908-528927 | None:intergenic | 45.0% | |
| GGCAAAAGCAGCAGAACAAA+AGG | - | chr8.3:529904-529923 | MS.gene042083:intron | 45.0% | |
| GGTTGGAGAGATTGACACAA+GGG | - | chr8.3:528284-528303 | MS.gene042083:CDS | 45.0% | |
| GTAGAAGACATTGGCATCCA+CGG | + | chr8.3:529714-529733 | None:intergenic | 45.0% | |
| GTGCTCTATCGATGCTTTCA+TGG | + | chr8.3:529252-529271 | None:intergenic | 45.0% | |
| TGAGGAAACAAAGGCTGCAA+TGG | - | chr8.3:530156-530175 | MS.gene042083:intron | 45.0% | |
| TGGTGAAGTAGCAGTTCCTA+AGG | - | chr8.3:528344-528363 | MS.gene042083:CDS | 45.0% | |
| TGTCAAGAGAAGATCGTCAG+AGG | - | chr8.3:528377-528396 | MS.gene042083:CDS | 45.0% | |
| TTGACAGCGAATCTGTCCTT+AGG | + | chr8.3:528363-528382 | None:intergenic | 45.0% | |
| ! | AGAAAGGTGGATTCTCCAAG+GGG | - | chr8.3:528258-528277 | MS.gene042083:CDS | 45.0% |
| ! | ATTGAAAAAGAGCGCGGAAG+AGG | - | chr8.3:529670-529689 | MS.gene042083:CDS | 45.0% |
| ! | GAGAAAGGTGGATTCTCCAA+GGG | - | chr8.3:528257-528276 | MS.gene042083:CDS | 45.0% |
| ! | GCAGCTTTGACAGATTGGAA+TGG | + | chr8.3:528312-528331 | None:intergenic | 45.0% |
| ! | TGAGAAAGGTGGATTCTCCA+AGG | - | chr8.3:528256-528275 | MS.gene042083:CDS | 45.0% |
| !! | CGCTTTGATTGCTGATTCCT+TGG | + | chr8.3:528949-528968 | None:intergenic | 45.0% |
| ACAAAAGGCCCTCTCGTCAT+GGG | - | chr8.3:528636-528655 | MS.gene042083:CDS | 50.0% | |
| AGAAGCCACAAAGACACTGC+AGG | - | chr8.3:529508-529527 | MS.gene042083:CDS | 50.0% | |
| AGAGATGAGCAGAAAGGCTC+AGG | - | chr8.3:529796-529815 | MS.gene042083:intron | 50.0% | |
| CAAACTCTCAAGGGTCTCCT+TGG | + | chr8.3:528898-528917 | None:intergenic | 50.0% | |
| CGAGAGTCTACTTTGCACGT+CGG | + | chr8.3:529954-529973 | None:intergenic | 50.0% | |
| CTGTCTCCGATTGTAGCTTC+TGG | + | chr8.3:529754-529773 | None:intergenic | 50.0% | |
| GCTATCATGGCTGAGTTGCA+AGG | - | chr8.3:530076-530095 | MS.gene042083:intron | 50.0% | |
| GGCTGAAGCTGTGAGGAATA+AGG | - | chr8.3:528968-528987 | MS.gene042083:CDS | 50.0% | |
| TACAAAAGGCCCTCTCGTCA+TGG | - | chr8.3:528635-528654 | MS.gene042083:CDS | 50.0% | |
| TTCTGACCTTGAGAAGGCCA+AGG | - | chr8.3:528878-528897 | MS.gene042083:CDS | 50.0% | |
| ! | GGCTTTGTGGTATGCAGAGA+AGG | - | chr8.3:530183-530202 | MS.gene042083:CDS | 50.0% |
| AAGGATCGGTGAGCTCTCAG+AGG | - | chr8.3:529217-529236 | MS.gene042083:CDS | 55.0% | |
| ACATTGGCATCCACGGTACC+TGG | + | chr8.3:529707-529726 | None:intergenic | 55.0% | |
| ATCTCTCCAACCTCTCCCCT+TGG | + | chr8.3:528276-528295 | None:intergenic | 55.0% | |
| CTAGCAGCATTGCAGGCAAC+AGG | - | chr8.3:529161-529180 | MS.gene042083:CDS | 55.0% | |
| CTGCAATGGAGACGGCTTTG+TGG | - | chr8.3:530170-530189 | MS.gene042083:intron | 55.0% | |
| GATTCTCCAAGGGGAGAGGT+TGG | - | chr8.3:528267-528286 | MS.gene042083:CDS | 55.0% | |
| GGCAAAGCTAGCAGCATTGC+AGG | - | chr8.3:529154-529173 | MS.gene042083:CDS | 55.0% | |
| TCAAAGCGGCTGAAGCTGTG+AGG | - | chr8.3:528961-528980 | MS.gene042083:CDS | 55.0% | |
| ! | AAAAAGAGCGCGGAAGAGGC+GGG | - | chr8.3:529674-529693 | MS.gene042083:CDS | 55.0% |
| ! | GAAAAAGAGCGCGGAAGAGG+CGG | - | chr8.3:529673-529692 | MS.gene042083:CDS | 55.0% |
| CTGCTTCTTCAGCCGCTGCT+CGG | + | chr8.3:529847-529866 | None:intergenic | 60.0% | |
| TGCTTCTTCAGCCGCTGCTC+GGG | + | chr8.3:529846-529865 | None:intergenic | 60.0% | |
| ! | AAAAGAGCGCGGAAGAGGCG+GGG | - | chr8.3:529675-529694 | MS.gene042083:CDS | 60.0% |
| ! | AGCTGAAGCATCCCGAGCAG+CGG | - | chr8.3:529832-529851 | MS.gene042083:intron | 60.0% |
| ! | GGGTCTCCTTGGCCTTCTCA+AGG | + | chr8.3:528887-528906 | None:intergenic | 60.0% |
| ! | GGTGGATTCTCCAAGGGGAG+AGG | - | chr8.3:528263-528282 | MS.gene042083:CDS | 60.0% |
| GCATCCACGGTACCTGGCTG+AGG | + | chr8.3:529701-529720 | None:intergenic | 65.0% | |
| GAAGAGGCGGGGCCTCAGCC+AGG | - | chr8.3:529686-529705 | MS.gene042083:CDS | 75.0% | |
| ! | GGGGCCTCAGCCAGGTACCG+TGG | - | chr8.3:529694-529713 | MS.gene042083:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 528255 | 530318 | 528255 | ID=MS.gene042083 |
| chr8.3 | mRNA | 528255 | 530318 | 528255 | ID=MS.gene042083.t1;Parent=MS.gene042083 |
| chr8.3 | exon | 530175 | 530318 | 530175 | ID=MS.gene042083.t1.exon1;Parent=MS.gene042083.t1 |
| chr8.3 | CDS | 530175 | 530318 | 530175 | ID=cds.MS.gene042083.t1;Parent=MS.gene042083.t1 |
| chr8.3 | exon | 528255 | 529796 | 528255 | ID=MS.gene042083.t1.exon2;Parent=MS.gene042083.t1 |
| chr8.3 | CDS | 528255 | 529796 | 528255 | ID=cds.MS.gene042083.t1;Parent=MS.gene042083.t1 |
| Gene Sequence |
| Protein sequence |
