AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042284

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042284.t1 MTR_4g131270 96.798 531 16 1 1 531 1 530 0.0 1059
MS.gene042284.t1 MTR_4g131220 96.610 531 17 1 1 531 1 530 0.0 1057
MS.gene042284.t1 MTR_4g131200 96.512 344 12 0 188 531 18 361 0.0 683
MS.gene042284.t1 MTR_4g131205 98.485 132 2 0 32 163 1 132 3.99e-90 272
MS.gene042284.t1 MTR_5g074640 24.401 459 253 11 52 477 54 451 3.03e-26 112
MS.gene042284.t1 MTR_5g074620 30.968 155 94 3 33 175 36 189 7.10e-16 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042284.t1 AT1G20370 57.426 505 172 8 16 502 12 491 0.0 563
MS.gene042284.t1 AT1G76120 59.322 472 155 8 32 501 1 437 0.0 548
MS.gene042284.t1 AT1G76120 56.777 391 132 8 32 420 1 356 2.57e-143 417
MS.gene042284.t1 AT2G30320 37.143 140 76 3 52 179 60 199 5.09e-19 90.5

Find 119 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGCTTTGTATGTTTC+TGG 0.086550 8.2:-3835240 MS.gene042284:CDS
CTTACCCTCGTTGTCATTAA+TGG 0.129147 8.2:+3834696 None:intergenic
CATGGGTATCTTTCCACTTC+TGG 0.173591 8.2:+3834052 None:intergenic
TGCTGTTGGTCAGGTTGTTT+CGG 0.216572 8.2:-3835139 MS.gene042284:CDS
GCTGTTGGTCAGGTTGTTTC+GGG 0.226417 8.2:-3835138 MS.gene042284:CDS
TTACTGCGGTGTTGGTTATC+AGG 0.256135 8.2:-3835307 MS.gene042284:CDS
GTGAGGGAAGGTTTGAATTA+AGG 0.305638 8.2:+3835079 None:intergenic
GGTAGACATCTTAACCTTCT+TGG 0.314194 8.2:+3835413 None:intergenic
CCCTCACAGATACGAATCTT+TGG 0.317752 8.2:-3835063 MS.gene042284:CDS
TATTGCTTCCACAGAATATA+AGG 0.337574 8.2:-3833962 MS.gene042284:CDS
CTTTCATTGACACCTCTTCA+TGG 0.363909 8.2:+3834034 None:intergenic
GAGACTGTATTGGCTAGTTT+AGG 0.366065 8.2:-3834931 MS.gene042284:CDS
GAAAGTCCACGATCCTGTTC+AGG 0.366757 8.2:+3835210 None:intergenic
GCAGATCTGGATAGTTTCTA+TGG 0.367344 8.2:+3833905 None:intergenic
TAAAACTGTGGTTTCTGATC+AGG 0.376101 8.2:-3834650 MS.gene042284:CDS
GGTGGATCTGAGAATAATTT+AGG 0.393164 8.2:-3834607 MS.gene042284:CDS
CCGTCAAGGATGCGCAGATC+TGG 0.394239 8.2:+3833892 None:intergenic
TTAGAATTTACTTCTTCAAC+TGG 0.399023 8.2:+3834670 None:intergenic
TTCTTTGCTTACTGCGGTGT+TGG 0.404138 8.2:-3835315 MS.gene042284:CDS
AGGAAGGAACTGTTGGTCTA+TGG 0.410886 8.2:-3833942 MS.gene042284:CDS
AGGAGTTAGTGCTGTTGGTC+AGG 0.420318 8.2:-3835148 MS.gene042284:CDS
CGGTCAGCTAGAACTGATAA+AGG 0.424782 8.2:-3835168 MS.gene042284:CDS
CCAGATCTGCGCATCCTTGA+CGG 0.424998 8.2:-3833892 MS.gene042284:CDS
TTCTGGAGCTGTACCTGAAC+AGG 0.432347 8.2:-3835223 MS.gene042284:CDS
GACTTTCTAAACGCTATGAC+TGG 0.432785 8.2:-3835194 MS.gene042284:CDS
TTATTCTGGTCGTGAAGTTA+TGG 0.445236 8.2:+3834458 None:intergenic
CAGATCTGCGCATCCTTGAC+GGG 0.449223 8.2:-3833891 MS.gene042284:CDS
CCTTCAATAGTCTTTGCACC+AGG 0.460741 8.2:+3835270 None:intergenic
TTACTTCATATAACCAGAAG+TGG 0.464262 8.2:-3834065 MS.gene042284:CDS
CCTGGTGCAAAGACTATTGA+AGG 0.472541 8.2:-3835270 MS.gene042284:CDS
TTCAGTAGCCGCGGAAGAGC+CGG 0.474647 8.2:-3835439 MS.gene042284:CDS
CACAACTGCTGAAGGAAGTA+AGG 0.474747 8.2:-3835367 MS.gene042284:CDS
GATACGGCTGCCAATGGAAG+TGG 0.482571 8.2:-3834553 MS.gene042284:CDS
GTGCCTACTGCACCCGAGGT+TGG 0.486292 8.2:-3834111 MS.gene042284:CDS
AATGAAAGCATATGAGAAAG+AGG 0.488811 8.2:-3834019 MS.gene042284:CDS
TACTGCGGTGTTGGTTATCA+GGG 0.489262 8.2:-3835306 MS.gene042284:CDS
TCATCAGATACGGAAGATGA+TGG 0.493754 8.2:-3834320 MS.gene042284:CDS
GGCCCGAAGAAAATTTCATT+CGG 0.495388 8.2:+3833798 None:intergenic
CATTAATGACAACGAGGGTA+AGG 0.495640 8.2:-3834695 MS.gene042284:CDS
CAAAGAAAATCGCTACCTTA+CGG 0.496906 8.2:+3835331 None:intergenic
ATTTGTGAAGTGTGAGATTG+TGG 0.497348 8.2:-3834359 MS.gene042284:CDS
ATCTTAACCTTCTTGGCCAC+CGG 0.498713 8.2:+3835420 None:intergenic
GAGAGGAAGAAAAGTGGAAG+GGG 0.504504 8.2:-3834869 MS.gene042284:CDS
CATCAGATACGGAAGATGAT+GGG 0.507228 8.2:-3834319 MS.gene042284:CDS
AGAAAAGTGGAAGGGGTGGT+TGG 0.512312 8.2:-3834862 MS.gene042284:CDS
CACTGTTGTAGTTGAGGGCA+TGG 0.514451 8.2:-3834383 MS.gene042284:CDS
AAAAGTGAACGGAGAGGATA+CGG 0.517227 8.2:-3834569 MS.gene042284:CDS
CTAAACGCTATGACTGGGCT+CGG 0.517397 8.2:-3835188 MS.gene042284:CDS
AGCACCACTGTTGTAGTTGA+GGG 0.518752 8.2:-3834388 MS.gene042284:CDS
ATCTAAATATAATCCAACCT+CGG 0.518807 8.2:+3834098 None:intergenic
CGATTCTATATTGATCCACC+TGG 0.519143 8.2:-3835114 MS.gene042284:CDS
AGGAAGAAAAGTGGAAGGGG+TGG 0.523374 8.2:-3834866 MS.gene042284:CDS
TCTAAATATAATCCAACCTC+GGG 0.523459 8.2:+3834099 None:intergenic
GGAAGAGCCGGTGGCCAAGA+AGG 0.524023 8.2:-3835427 MS.gene042284:CDS
GAGAGAGGAAGAAAAGTGGA+AGG 0.524603 8.2:-3834871 MS.gene042284:CDS
TTCTGAGAGAGGAAGAAAAG+TGG 0.528778 8.2:-3834875 MS.gene042284:CDS
GTTGAGGTTTCTTTAAGCAA+AGG 0.530209 8.2:-3834745 MS.gene042284:CDS
TATTCTGTGGAAGCAATATG+AGG 0.533607 8.2:+3833967 None:intergenic
AGCATATGAGAAAGAGGCTG+AGG 0.533806 8.2:-3834013 MS.gene042284:CDS
AGAGAGGAAGAAAAGTGGAA+GGG 0.535330 8.2:-3834870 MS.gene042284:CDS
CACTGTGCCTACTGCACCCG+AGG 0.538197 8.2:-3834115 MS.gene042284:CDS
TTTCATTGACACCTCTTCAT+GGG 0.538326 8.2:+3834035 None:intergenic
AGAAGTAAATTCTAAAACTG+TGG 0.542353 8.2:-3834662 MS.gene042284:CDS
CAGGTGGATCAATATAGAAT+CGG 0.544533 8.2:+3835115 None:intergenic
GATAAAGGAGTTAGTGCTGT+TGG 0.545304 8.2:-3835153 MS.gene042284:CDS
AGTTCCTTCCTTATATTCTG+TGG 0.546489 8.2:+3833954 None:intergenic
GCTTCATGCTTCATCAGATA+CGG 0.547048 8.2:-3834330 MS.gene042284:CDS
CCAAAGATTCGTATCTGTGA+GGG 0.547978 8.2:+3835063 None:intergenic
TTAAGGCGATCAACGAAGCC+AGG 0.552578 8.2:+3835096 None:intergenic
ATAACAAAACCCACTTCCAT+TGG 0.552929 8.2:+3834543 None:intergenic
GAATATAAGGAAGGAACTGT+TGG 0.554434 8.2:-3833949 MS.gene042284:CDS
TTGTTATGGTGAGAAGGAGA+GGG 0.555405 8.2:-3834527 MS.gene042284:CDS
AAGCACCACTGTTGTAGTTG+AGG 0.555686 8.2:-3834389 MS.gene042284:CDS
TGGAGTTACAAAGGATGTTG+AGG 0.558784 8.2:-3834761 MS.gene042284:CDS
GCTACTGAAAGTAACGGCGC+TGG 0.559828 8.2:+3835453 None:intergenic
TTTCTTCCTCTCTCAGAACA+TGG 0.560829 8.2:+3834880 None:intergenic
AATCCAACCTCGGGTGCAGT+AGG 0.564016 8.2:+3834108 None:intergenic
CTGCGCATCCTTGACGGGGA+AGG 0.565379 8.2:-3833886 MS.gene042284:CDS
ACCACTACTTCTGATGATGA+AGG 0.569745 8.2:-3835393 MS.gene042284:CDS
GATGAGGTTGCTGCTACAAA+TGG 0.573318 8.2:-3834628 MS.gene042284:CDS
TCCTTCATCATCAGAAGTAG+TGG 0.575739 8.2:+3835392 None:intergenic
GGAGAGGATACGGCTGCCAA+TGG 0.576386 8.2:-3834559 MS.gene042284:CDS
TCGCGATAGAGAGACTGTAT+TGG 0.594900 8.2:-3834941 MS.gene042284:CDS
TTTGTTATGGTGAGAAGGAG+AGG 0.595584 8.2:-3834528 MS.gene042284:CDS
GCTGGAGATGATGAAGTTGA+CGG 0.600440 8.2:+3835471 None:intergenic
GCTTTCTCGATAAGTGACTC+AGG 0.601494 8.2:+3834265 None:intergenic
GAAGCTGATGATGTTGAGAA+TGG 0.601511 8.2:-3834814 MS.gene042284:CDS
ATCAGATACGGAAGATGATG+GGG 0.604058 8.2:-3834318 MS.gene042284:CDS
TCGTGACACCTTCCCCGTCA+AGG 0.607550 8.2:+3833878 None:intergenic
CTTCAATAGTCTTTGCACCA+GGG 0.608022 8.2:+3835271 None:intergenic
GGTAAGATACAAGCGCCGTA+AGG 0.609527 8.2:-3835346 MS.gene042284:CDS
TCTCTATCGCGATGACAACA+TGG 0.610304 8.2:+3834952 None:intergenic
CTTGGCCACCGGCTCTTCCG+CGG 0.611177 8.2:+3835431 None:intergenic
GAAGATGATGGGGCTTGCCG+TGG 0.611519 8.2:-3834308 MS.gene042284:CDS
GCCGTTACTTTCAGTAGCCG+CGG 0.614182 8.2:-3835448 MS.gene042284:CDS
TTTGTGAAGTGTGAGATTGT+GGG 0.614643 8.2:-3834358 MS.gene042284:CDS
GAGGTTGCTGCTACAAATGG+TGG 0.614830 8.2:-3834625 MS.gene042284:CDS
ACTTTCTAAACGCTATGACT+GGG 0.615231 8.2:-3835193 MS.gene042284:CDS
GAAGGATGCACAACTGCTGA+AGG 0.618950 8.2:-3835375 MS.gene042284:CDS
AGTAGCCGCGGAAGAGCCGG+TGG 0.619790 8.2:-3835436 MS.gene042284:CDS
ACAATTTCTCATAATTGCCA+CGG 0.619993 8.2:+3834291 None:intergenic
GTGGAAAGATACCCATGAAG+AGG 0.624853 8.2:-3834046 MS.gene042284:CDS
TGTTTGCCATGTTCTGAGAG+AGG 0.628824 8.2:-3834886 MS.gene042284:CDS
TGTGGTTTCTGATCAGGATG+AGG 0.630641 8.2:-3834644 MS.gene042284:CDS
GCTTCCACAGAATATAAGGA+AGG 0.637022 8.2:-3833958 MS.gene042284:CDS
CATGCCCTCAACTACAACAG+TGG 0.639893 8.2:+3834384 None:intergenic
GCTGTACCTGAACAGGATCG+TGG 0.643569 8.2:-3835216 MS.gene042284:CDS
ACCAAAGATTCGTATCTGTG+AGG 0.646180 8.2:+3835062 None:intergenic
AGATCTGCGCATCCTTGACG+GGG 0.657312 8.2:-3833890 MS.gene042284:CDS
ATACGGCTGCCAATGGAAGT+GGG 0.658422 8.2:-3834552 MS.gene042284:CDS
AGATTCGTATCTGTGAGGGA+AGG 0.664361 8.2:+3835067 None:intergenic
GAATCCATTAATGACAACGA+GGG 0.669982 8.2:-3834700 MS.gene042284:CDS
GAATAATTTAGGCATTCTCG+AGG 0.670398 8.2:-3834596 MS.gene042284:CDS
AGGCGATCAACGAAGCCAGG+TGG 0.685026 8.2:+3835099 None:intergenic
TCCGCGGCTACTGAAAGTAA+CGG 0.694317 8.2:+3835447 None:intergenic
GGTTGACTCTGGAGTTACAA+AGG 0.706513 8.2:-3834770 MS.gene042284:CDS
CACGACCAGAATAAAACCCG+AGG 0.709736 8.2:-3834449 MS.gene042284:CDS
CATGGATCAAGAGCAAACAC+AGG 0.714774 8.2:+3834970 None:intergenic
AGAATCCATTAATGACAACG+AGG 0.722782 8.2:-3834701 MS.gene042284:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTATTTCAAATATAAAGT+TGG + chr8.2:3835106-3835125 None:intergenic 15.0%
!!! AATATTTTGAAGTGTTATGT+TGG - chr8.2:3834812-3834831 MS.gene042284:CDS 20.0%
!!! ATATTTTGAAGTGTTATGTT+GGG - chr8.2:3834813-3834832 MS.gene042284:CDS 20.0%
! ATCTAAATATAATCCAACCT+CGG + chr8.2:3835210-3835229 None:intergenic 25.0%
! TTAGAATTTACTTCTTCAAC+TGG + chr8.2:3834638-3834657 None:intergenic 25.0%
! TTCATCAAACAAAAATGATG+TGG - chr8.2:3834514-3834533 MS.gene042284:CDS 25.0%
!!! AGAAGTAAATTCTAAAACTG+TGG - chr8.2:3834643-3834662 MS.gene042284:CDS 25.0%
ACAATTTCTCATAATTGCCA+CGG + chr8.2:3835017-3835036 None:intergenic 30.0%
TATTGCTTCCACAGAATATA+AGG - chr8.2:3835343-3835362 MS.gene042284:CDS 30.0%
TCTAAATATAATCCAACCTC+GGG + chr8.2:3835209-3835228 None:intergenic 30.0%
TTACTTCATATAACCAGAAG+TGG - chr8.2:3835240-3835259 MS.gene042284:CDS 30.0%
! AATGAAAGCATATGAGAAAG+AGG - chr8.2:3835286-3835305 MS.gene042284:CDS 30.0%
! ATAATGAAACGTTTTGCAGA+AGG + chr8.2:3834884-3834903 None:intergenic 30.0%
ACTTTCTAAACGCTATGACT+GGG - chr8.2:3834112-3834131 MS.gene042284:CDS 35.0%
AGAATCCATTAATGACAACG+AGG - chr8.2:3834604-3834623 MS.gene042284:CDS 35.0%
AGTTCCTTCCTTATATTCTG+TGG + chr8.2:3835354-3835373 None:intergenic 35.0%
ATAACAAAACCCACTTCCAT+TGG + chr8.2:3834765-3834784 None:intergenic 35.0%
ATTGTTTCGTCCAAAATGCA+GGG - chr8.2:3835157-3835176 MS.gene042284:CDS 35.0%
ATTTGTGAAGTGTGAGATTG+TGG - chr8.2:3834946-3834965 MS.gene042284:CDS 35.0%
CAAAGAAAATCGCTACCTTA+CGG + chr8.2:3833977-3833996 None:intergenic 35.0%
CAGGTGGATCAATATAGAAT+CGG + chr8.2:3834193-3834212 None:intergenic 35.0%
GAATAATTTAGGCATTCTCG+AGG - chr8.2:3834709-3834728 MS.gene042284:CDS 35.0%
GAATATAAGGAAGGAACTGT+TGG - chr8.2:3835356-3835375 MS.gene042284:CDS 35.0%
GAATCCATTAATGACAACGA+GGG - chr8.2:3834605-3834624 MS.gene042284:CDS 35.0%
GGTGGATCTGAGAATAATTT+AGG - chr8.2:3834698-3834717 MS.gene042284:CDS 35.0%
GTTGAGGTTTCTTTAAGCAA+AGG - chr8.2:3834560-3834579 MS.gene042284:CDS 35.0%
TAAAACTGTGGTTTCTGATC+AGG - chr8.2:3834655-3834674 MS.gene042284:CDS 35.0%
TATTCTGTGGAAGCAATATG+AGG + chr8.2:3835341-3835360 None:intergenic 35.0%
TTATTCTGGTCGTGAAGTTA+TGG + chr8.2:3834850-3834869 None:intergenic 35.0%
TTTCATTGACACCTCTTCAT+GGG + chr8.2:3835273-3835292 None:intergenic 35.0%
TTTGTGAAGTGTGAGATTGT+GGG - chr8.2:3834947-3834966 MS.gene042284:CDS 35.0%
! AAAAATGATGTGGTTGACTC+TGG - chr8.2:3834524-3834543 MS.gene042284:CDS 35.0%
! GAAGAAGCTTTGTATGTTTC+TGG - chr8.2:3834065-3834084 MS.gene042284:CDS 35.0%
!! CTAAGAAGTTTTGTGATCGT+AGG - chr8.2:3834294-3834313 MS.gene042284:CDS 35.0%
!!! AATGGAAGTGGGTTTTGTTA+TGG - chr8.2:3834764-3834783 MS.gene042284:CDS 35.0%
AAAAGTGAACGGAGAGGATA+CGG - chr8.2:3834736-3834755 MS.gene042284:CDS 40.0%
ACCAAAGATTCGTATCTGTG+AGG + chr8.2:3834246-3834265 None:intergenic 40.0%
AGAGAGGAAGAAAAGTGGAA+GGG - chr8.2:3834435-3834454 MS.gene042284:CDS 40.0%
ATCAGATACGGAAGATGATG+GGG - chr8.2:3834987-3835006 MS.gene042284:CDS 40.0%
CATCAGATACGGAAGATGAT+GGG - chr8.2:3834986-3835005 MS.gene042284:CDS 40.0%
CATTAATGACAACGAGGGTA+AGG - chr8.2:3834610-3834629 MS.gene042284:CDS 40.0%
CCAAAGATTCGTATCTGTGA+GGG + chr8.2:3834245-3834264 None:intergenic 40.0%
CGATTCTATATTGATCCACC+TGG - chr8.2:3834191-3834210 MS.gene042284:intron 40.0%
CTCGAGGAAGAAAAAGTGAA+CGG - chr8.2:3834725-3834744 MS.gene042284:CDS 40.0%
CTTACCCTCGTTGTCATTAA+TGG + chr8.2:3834612-3834631 None:intergenic 40.0%
CTTCAATAGTCTTTGCACCA+GGG + chr8.2:3834037-3834056 None:intergenic 40.0%
CTTTCATTGACACCTCTTCA+TGG + chr8.2:3835274-3835293 None:intergenic 40.0%
GACTTTCTAAACGCTATGAC+TGG - chr8.2:3834111-3834130 MS.gene042284:CDS 40.0%
GATAAAGGAGTTAGTGCTGT+TGG - chr8.2:3834152-3834171 MS.gene042284:intron 40.0%
GATTGTTTCGTCCAAAATGC+AGG - chr8.2:3835156-3835175 MS.gene042284:CDS 40.0%
GCAGATCTGGATAGTTTCTA+TGG + chr8.2:3835403-3835422 None:intergenic 40.0%
GCTTCATGCTTCATCAGATA+CGG - chr8.2:3834975-3834994 MS.gene042284:CDS 40.0%
GCTTCCACAGAATATAAGGA+AGG - chr8.2:3835347-3835366 MS.gene042284:CDS 40.0%
GGTAGACATCTTAACCTTCT+TGG + chr8.2:3833895-3833914 None:intergenic 40.0%
GTGAGGGAAGGTTTGAATTA+AGG + chr8.2:3834229-3834248 None:intergenic 40.0%
TCATCAGATACGGAAGATGA+TGG - chr8.2:3834985-3835004 MS.gene042284:CDS 40.0%
TCCTTCATCATCAGAAGTAG+TGG + chr8.2:3833916-3833935 None:intergenic 40.0%
TGGAGTTACAAAGGATGTTG+AGG - chr8.2:3834544-3834563 MS.gene042284:CDS 40.0%
TTGTTATGGTGAGAAGGAGA+GGG - chr8.2:3834778-3834797 MS.gene042284:CDS 40.0%
TTTCTTCCTCTCTCAGAACA+TGG + chr8.2:3834428-3834447 None:intergenic 40.0%
! ACCACTACTTCTGATGATGA+AGG - chr8.2:3833912-3833931 MS.gene042284:CDS 40.0%
! ATGCTAACATCCCTGCATTT+TGG + chr8.2:3835170-3835189 None:intergenic 40.0%
! GAAGCTGATGATGTTGAGAA+TGG - chr8.2:3834491-3834510 MS.gene042284:CDS 40.0%
! GCGATTTTCTTTGCTTACTG+CGG - chr8.2:3833984-3834003 MS.gene042284:CDS 40.0%
! TTCTGAGAGAGGAAGAAAAG+TGG - chr8.2:3834430-3834449 MS.gene042284:CDS 40.0%
! TTTGTTATGGTGAGAAGGAG+AGG - chr8.2:3834777-3834796 MS.gene042284:CDS 40.0%
!! AGAAGTTTTGTGATCGTAGG+AGG - chr8.2:3834297-3834316 MS.gene042284:CDS 40.0%
!! GAGACTGTATTGGCTAGTTT+AGG - chr8.2:3834374-3834393 MS.gene042284:CDS 40.0%
!!! TGGGTTTTGTTATGGTGAGA+AGG - chr8.2:3834772-3834791 MS.gene042284:CDS 40.0%
AAGCACCACTGTTGTAGTTG+AGG - chr8.2:3834916-3834935 MS.gene042284:CDS 45.0%
AGATTCGTATCTGTGAGGGA+AGG + chr8.2:3834241-3834260 None:intergenic 45.0%
AGCACCACTGTTGTAGTTGA+GGG - chr8.2:3834917-3834936 MS.gene042284:CDS 45.0%
AGCATATGAGAAAGAGGCTG+AGG - chr8.2:3835292-3835311 MS.gene042284:CDS 45.0%
ATCTTAACCTTCTTGGCCAC+CGG + chr8.2:3833888-3833907 None:intergenic 45.0%
CACAACTGCTGAAGGAAGTA+AGG - chr8.2:3833938-3833957 MS.gene042284:CDS 45.0%
CATGGATCAAGAGCAAACAC+AGG + chr8.2:3834338-3834357 None:intergenic 45.0%
CATGGGTATCTTTCCACTTC+TGG + chr8.2:3835256-3835275 None:intergenic 45.0%
CCCTCACAGATACGAATCTT+TGG - chr8.2:3834242-3834261 MS.gene042284:intron 45.0%
CCTGGTGCAAAGACTATTGA+AGG - chr8.2:3834035-3834054 MS.gene042284:CDS 45.0%
CCTTCAATAGTCTTTGCACC+AGG + chr8.2:3834038-3834057 None:intergenic 45.0%
CGGTCAGCTAGAACTGATAA+AGG - chr8.2:3834137-3834156 MS.gene042284:intron 45.0%
GAGAGAGGAAGAAAAGTGGA+AGG - chr8.2:3834434-3834453 MS.gene042284:CDS 45.0%
GAGAGGAAGAAAAGTGGAAG+GGG - chr8.2:3834436-3834455 MS.gene042284:CDS 45.0%
GATGAGGTTGCTGCTACAAA+TGG - chr8.2:3834677-3834696 MS.gene042284:CDS 45.0%
GCTGGAGATGATGAAGTTGA+CGG + chr8.2:3833837-3833856 None:intergenic 45.0%
GCTTTCTCGATAAGTGACTC+AGG + chr8.2:3835043-3835062 None:intergenic 45.0%
GGAAGAAAAAGTGAACGGAG+AGG - chr8.2:3834730-3834749 MS.gene042284:CDS 45.0%
GTGGAAAGATACCCATGAAG+AGG - chr8.2:3835259-3835278 MS.gene042284:CDS 45.0%
TCGCGATAGAGAGACTGTAT+TGG - chr8.2:3834364-3834383 MS.gene042284:CDS 45.0%
TCTCTATCGCGATGACAACA+TGG + chr8.2:3834356-3834375 None:intergenic 45.0%
TGTGGTTTCTGATCAGGATG+AGG - chr8.2:3834661-3834680 MS.gene042284:CDS 45.0%
TTCTTTGCTTACTGCGGTGT+TGG - chr8.2:3833990-3834009 MS.gene042284:CDS 45.0%
! ACGTTTTGCAGAAGGATCCT+CGG + chr8.2:3834876-3834895 None:intergenic 45.0%
! AGGAAGGAACTGTTGGTCTA+TGG - chr8.2:3835363-3835382 MS.gene042284:CDS 45.0%
! TGCTGTTGGTCAGGTTGTTT+CGG - chr8.2:3834166-3834185 MS.gene042284:intron 45.0%
!! GGTTGACTCTGGAGTTACAA+AGG - chr8.2:3834535-3834554 MS.gene042284:CDS 45.0%
!! TACTGCGGTGTTGGTTATCA+GGG - chr8.2:3833999-3834018 MS.gene042284:CDS 45.0%
!! TGTTTGCCATGTTCTGAGAG+AGG - chr8.2:3834419-3834438 MS.gene042284:CDS 45.0%
!! TTACTGCGGTGTTGGTTATC+AGG - chr8.2:3833998-3834017 MS.gene042284:CDS 45.0%
!!! AGGATCCTCGGGTTTTATTC+TGG + chr8.2:3834864-3834883 None:intergenic 45.0%
AGAAAAGTGGAAGGGGTGGT+TGG - chr8.2:3834443-3834462 MS.gene042284:CDS 50.0%
AGGAAGAAAAGTGGAAGGGG+TGG - chr8.2:3834439-3834458 MS.gene042284:CDS 50.0%
ATACGGCTGCCAATGGAAGT+GGG - chr8.2:3834753-3834772 MS.gene042284:CDS 50.0%
CACGACCAGAATAAAACCCG+AGG - chr8.2:3834856-3834875 MS.gene042284:CDS 50.0%
CACTGTTGTAGTTGAGGGCA+TGG - chr8.2:3834922-3834941 MS.gene042284:CDS 50.0%
CAGGGTATGCAGAAAAACCC+TGG - chr8.2:3834017-3834036 MS.gene042284:CDS 50.0%
CATGCCCTCAACTACAACAG+TGG + chr8.2:3834924-3834943 None:intergenic 50.0%
CTAAACGCTATGACTGGGCT+CGG - chr8.2:3834117-3834136 MS.gene042284:CDS 50.0%
GAAAGTCCACGATCCTGTTC+AGG + chr8.2:3834098-3834117 None:intergenic 50.0%
GAAGGATGCACAACTGCTGA+AGG - chr8.2:3833930-3833949 MS.gene042284:CDS 50.0%
GAGGTTGCTGCTACAAATGG+TGG - chr8.2:3834680-3834699 MS.gene042284:CDS 50.0%
TCCGCGGCTACTGAAAGTAA+CGG + chr8.2:3833861-3833880 None:intergenic 50.0%
TTAAGGCGATCAACGAAGCC+AGG + chr8.2:3834212-3834231 None:intergenic 50.0%
! AGGAGTTAGTGCTGTTGGTC+AGG - chr8.2:3834157-3834176 MS.gene042284:intron 50.0%
! CGTTTTGCAGAAGGATCCTC+GGG + chr8.2:3834875-3834894 None:intergenic 50.0%
! GCTGTTGGTCAGGTTGTTTC+GGG - chr8.2:3834167-3834186 MS.gene042284:intron 50.0%
! GGTAAGATACAAGCGCCGTA+AGG - chr8.2:3833959-3833978 MS.gene042284:CDS 50.0%
!! TTCTGGAGCTGTACCTGAAC+AGG - chr8.2:3834082-3834101 MS.gene042284:CDS 50.0%
AATCCAACCTCGGGTGCAGT+AGG + chr8.2:3835200-3835219 None:intergenic 55.0%
AGATCTGCGCATCCTTGACG+GGG - chr8.2:3835415-3835434 MS.gene042284:CDS 55.0%
CAGATCTGCGCATCCTTGAC+GGG - chr8.2:3835414-3835433 MS.gene042284:CDS 55.0%
CCAGATCTGCGCATCCTTGA+CGG - chr8.2:3835413-3835432 MS.gene042284:CDS 55.0%
GATACGGCTGCCAATGGAAG+TGG - chr8.2:3834752-3834771 MS.gene042284:CDS 55.0%
GCTACTGAAAGTAACGGCGC+TGG + chr8.2:3833855-3833874 None:intergenic 55.0%
GCTGTACCTGAACAGGATCG+TGG - chr8.2:3834089-3834108 MS.gene042284:CDS 55.0%
! GCCGTTACTTTCAGTAGCCG+CGG - chr8.2:3833857-3833876 MS.gene042284:CDS 55.0%
AGGCGATCAACGAAGCCAGG+TGG + chr8.2:3834209-3834228 None:intergenic 60.0%
CCGTCAAGGATGCGCAGATC+TGG + chr8.2:3835416-3835435 None:intergenic 60.0%
GGAGAGGATACGGCTGCCAA+TGG - chr8.2:3834746-3834765 MS.gene042284:CDS 60.0%
TCGTGACACCTTCCCCGTCA+AGG + chr8.2:3835430-3835449 None:intergenic 60.0%
TTCAGTAGCCGCGGAAGAGC+CGG - chr8.2:3833866-3833885 MS.gene042284:CDS 60.0%
!! GAAGATGATGGGGCTTGCCG+TGG - chr8.2:3834997-3835016 MS.gene042284:CDS 60.0%
CACTGTGCCTACTGCACCCG+AGG - chr8.2:3835190-3835209 MS.gene042284:CDS 65.0%
CTGCGCATCCTTGACGGGGA+AGG - chr8.2:3835419-3835438 MS.gene042284:CDS 65.0%
GGAAGAGCCGGTGGCCAAGA+AGG - chr8.2:3833878-3833897 MS.gene042284:CDS 65.0%
GTGCCTACTGCACCCGAGGT+TGG - chr8.2:3835194-3835213 MS.gene042284:CDS 65.0%
AGTAGCCGCGGAAGAGCCGG+TGG - chr8.2:3833869-3833888 MS.gene042284:CDS 70.0%
!! CTTGGCCACCGGCTCTTCCG+CGG + chr8.2:3833877-3833896 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 3833813 3835514 3833813 ID=MS.gene042284
chr8.2 mRNA 3833813 3835514 3833813 ID=MS.gene042284.t1;Parent=MS.gene042284
chr8.2 exon 3834256 3835514 3834256 ID=MS.gene042284.t1.exon1;Parent=MS.gene042284.t1
chr8.2 CDS 3834256 3835514 3834256 ID=cds.MS.gene042284.t1;Parent=MS.gene042284.t1
chr8.2 exon 3833813 3834149 3833813 ID=MS.gene042284.t1.exon2;Parent=MS.gene042284.t1
chr8.2 CDS 3833813 3834149 3833813 ID=cds.MS.gene042284.t1;Parent=MS.gene042284.t1
Gene Sequence

>MS.gene042284

ATGGAAAACTCAGATAAAACTCCGTCAACTTCATCATCTCCAGCGCCGTTACTTTCAGTAGCCGCGGAAGAGCCGGTGGCCAAGAAGGTTAAGATGTCTACCACTACTTCTGATGATGAAGGATGCACAACTGCTGAAGGAAGTAAGGTAAGATACAAGCGCCGTAAGGTAGCGATTTTCTTTGCTTACTGCGGTGTTGGTTATCAGGGTATGCAGAAAAACCCTGGTGCAAAGACTATTGAAGGTGAACTAGAAGAAGCTTTGTATGTTTCTGGAGCTGTACCTGAACAGGATCGTGGACTTTCTAAACGCTATGACTGGGCTCGGTCAGCTAGAACTGATAAAGGAGTTAGTGCTGTTGGTCAGGTTGTTTCGGGCCGATTCTATATTGATCCACCTGGCTTCGTTGATCGCCTTAATTCAAACCTTCCCTCACAGATACGAATCTTTGGTTTTAAGCGAGTGACTGCTTCTTTTAGTGCTAAGAAGTTTTGTGATCGTAGGAGGTATGTTTATCTCATTCCTGTGTTTGCTCTTGATCCATGTTGTCATCGCGATAGAGAGACTGTATTGGCTAGTTTAGGTTCTGAAAATGAGCTTGTTAAGTGTTTGCCATGTTCTGAGAGAGGAAGAAAAGTGGAAGGGGTGGTTGGTAATAGTAAGCGCAATCTTGAGCTAGAAGCTGATGATGTTGAGAATGGTTCATCAAACAAAAATGATGTGGTTGACTCTGGAGTTACAAAGGATGTTGAGGTTTCTTTAAGCAAAGGTGATGCTAATCATTTAAATAAAGAATCCATTAATGACAACGAGGGTAAGGTTCCAGTTGAAGAAGTAAATTCTAAAACTGTGGTTTCTGATCAGGATGAGGTTGCTGCTACAAATGGTGGATCTGAGAATAATTTAGGCATTCTCGAGGAAGAAAAAGTGAACGGAGAGGATACGGCTGCCAATGGAAGTGGGTTTTGTTATGGTGAGAAGGAGAGGGACAGATTTAACAATATTTTGAAGTGTTATGTTGGGACTCATAACTTCCATAACTTCACGACCAGAATAAAACCCGAGGATCCTTCTGCAAAACGTTTCATTATTTCATTTGACGCAAGCACCACTGTTGTAGTTGAGGGCATGGAATTTGTGAAGTGTGAGATTGTGGGACAGAGCTTCATGCTTCATCAGATACGGAAGATGATGGGGCTTGCCGTGGCAATTATGAGAAATTGTGCACCTGAGTCACTTATCGAGAAAGCTTTGCAGAAGTGAGTGCTGCTAATGTAGCGTAGTTTATCTCCAACTTTATATTTGAAATAATGTGACAATCATCTAATATAGTTTCTTATTTTGATTGTTTCGTCCAAAATGCAGGGATGTTAGCATCACTGTGCCTACTGCACCCGAGGTTGGATTATATTTAGATGAGTGCTTCTTTACTTCATATAACCAGAAGTGGAAAGATACCCATGAAGAGGTGTCAATGAAAGCATATGAGAAAGAGGCTGAGGATTTCAAAATGCAGTACATATATCCTCATATTGCTTCCACAGAATATAAGGAAGGAACTGTTGGTCTATGGTTGCATTCTTTGAACCATAGAAACTATCCAGATCTGCGCATCCTTGACGGGGAAGGTGTCACGAATGACAAGAAAGCTGAAATTGACATGAATGACAAGAAAACTGAAATTGAAGTTGCAACCGAATGA
Protein sequence

>MS.gene042284.t1

MENSDKTPSTSSSPAPLLSVAAEEPVAKKVKMSTTTSDDEGCTTAEGSKVRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCDRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLELEADDVENGSSNKNDVVDSGVTKDVEVSLSKGDANHLNKESINDNEGKVPVEEVNSKTVVSDQDEVAATNGGSENNLGILEEEKVNGEDTAANGSGFCYGEKERDRFNNILKCYVGTHNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAEDFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLRILDGEGVTNDKKAEIDMNDKKTEIEVATE