Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04266.t1 | XP_013460014.1 | 95.7 | 185 | 8 | 0 | 82 | 266 | 35 | 219 | 2.40E-90 | 342 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04266.t1 | P82413 | 56.1 | 132 | 54 | 1 | 134 | 265 | 102 | 229 | 3.4e-32 | 140.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04266.t1 | A0A072V7A1 | 95.7 | 185 | 8 | 0 | 82 | 266 | 35 | 219 | 1.7e-90 | 342.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene94930 | MS.gene04266 | PPI |
| MS.gene95386 | MS.gene04266 | PPI |
| MS.gene04216 | MS.gene04266 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04266.t1 | MTR_3g058620 | 95.676 | 185 | 8 | 0 | 82 | 266 | 35 | 219 | 6.46e-128 | 362 |
| MS.gene04266.t1 | MTR_5g013300 | 40.884 | 181 | 84 | 2 | 82 | 262 | 65 | 222 | 7.01e-39 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04266.t1 | AT5G11750 | 75.839 | 149 | 33 | 2 | 120 | 266 | 80 | 227 | 9.54e-76 | 230 |
| MS.gene04266.t1 | AT4G11630 | 75.342 | 146 | 33 | 1 | 121 | 266 | 81 | 223 | 7.01e-75 | 228 |
| MS.gene04266.t1 | AT5G11750 | 65.318 | 173 | 33 | 3 | 120 | 266 | 80 | 251 | 4.95e-70 | 216 |
| MS.gene04266.t1 | AT1G24240 | 73.510 | 151 | 37 | 1 | 116 | 266 | 73 | 220 | 9.19e-66 | 204 |
| MS.gene04266.t1 | AT4G17560 | 48.966 | 145 | 67 | 1 | 121 | 265 | 84 | 221 | 3.92e-37 | 131 |
| MS.gene04266.t1 | AT5G47190 | 59.259 | 108 | 44 | 0 | 158 | 265 | 118 | 225 | 2.16e-36 | 129 |
| MS.gene04266.t1 | AT1G24240 | 64.865 | 74 | 23 | 1 | 116 | 189 | 73 | 143 | 1.01e-23 | 94.4 |
Find 74 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCGTGTTTCTATTATAAA+AGG | 0.194759 | 3.4:+55066373 | MS.gene04266:CDS |
| AACAATCTAAAGTGATTTCT+TGG | 0.197601 | 3.4:+55065186 | MS.gene04266:CDS |
| GGGTCTGGTGTTGCGGATAT+TGG | 0.227977 | 3.4:+55065447 | MS.gene04266:CDS |
| TTGATGCGGGGAGGCAATTC+AGG | 0.268789 | 3.4:-55066008 | None:intergenic |
| CTAAAGTGATTTCTTGGAAT+TGG | 0.269997 | 3.4:+55065192 | MS.gene04266:CDS |
| GCGGATATTGGGTTGATTAT+TGG | 0.296717 | 3.4:+55065459 | MS.gene04266:CDS |
| TTGTCAGGCGTCCACAGTTC+TGG | 0.310894 | 3.4:+55065383 | MS.gene04266:intron |
| TGTGGACAGGTCTGGACTTC+AGG | 0.311298 | 3.4:+55065410 | MS.gene04266:CDS |
| ATCCCTCAGGTAGTAGAGTT+TGG | 0.318153 | 3.4:-55067090 | None:intergenic |
| GGTCTGGTGTTGCGGATATT+GGG | 0.355504 | 3.4:+55065448 | MS.gene04266:CDS |
| ACCTTTATCTCCTTTATGTT+AGG | 0.356884 | 3.4:-55067041 | None:intergenic |
| ACCTAACATAAAGGAGATAA+AGG | 0.358575 | 3.4:+55067040 | MS.gene04266:CDS |
| CGGGGAGGCAATTCAGGTTC+TGG | 0.369112 | 3.4:-55066002 | None:intergenic |
| CTTCAGGTGCTAAGCAGAGC+TGG | 0.383541 | 3.4:+55065426 | MS.gene04266:CDS |
| CTGGTTTGTGTGGACAGGTC+TGG | 0.390687 | 3.4:+55065402 | MS.gene04266:CDS |
| ACACTACATTCAGACTTAGA+AGG | 0.398714 | 3.4:+55066428 | MS.gene04266:CDS |
| GAAGGATGGTAGCTGGGGTT+GGG | 0.398853 | 3.4:+55066446 | MS.gene04266:CDS |
| TTGTCCCTCATTTCCGAAGC+AGG | 0.430695 | 3.4:+55065928 | MS.gene04266:CDS |
| ATATAACCAGGCTTTATATC+AGG | 0.433635 | 3.4:-55066211 | None:intergenic |
| AGAAGGATGGTAGCTGGGGT+TGG | 0.434672 | 3.4:+55066445 | MS.gene04266:CDS |
| TGGTTGCATTGGAAAGGAAC+TGG | 0.439286 | 3.4:+55065212 | MS.gene04266:CDS |
| ATGCTGAAATGAAGGCAATC+TGG | 0.441606 | 3.4:-55065895 | None:intergenic |
| CAGTTCTGGTTTGTGTGGAC+AGG | 0.444101 | 3.4:+55065397 | MS.gene04266:CDS |
| CGGTAGACATAAACCTGCTT+CGG | 0.445201 | 3.4:-55065941 | None:intergenic |
| TAATCTCTTAAATTTGATGC+GGG | 0.446449 | 3.4:-55066021 | None:intergenic |
| GACTTAGAAGGATGGTAGCT+GGG | 0.461287 | 3.4:+55066440 | MS.gene04266:CDS |
| GGCGTGTTTCTATTATAAAA+GGG | 0.465947 | 3.4:+55066374 | MS.gene04266:CDS |
| GTGCTAAGCAGAGCTGGGTC+TGG | 0.471202 | 3.4:+55065432 | MS.gene04266:CDS |
| TTTCTTGGAATTGGTTGCAT+TGG | 0.472499 | 3.4:+55065201 | MS.gene04266:CDS |
| AGACTTAGAAGGATGGTAGC+TGG | 0.494744 | 3.4:+55066439 | MS.gene04266:CDS |
| AGACAAAGAAGCAGTGGAGG+AGG | 0.496174 | 3.4:+55066168 | MS.gene04266:CDS |
| ATAAACCTGCTTCGGAAATG+AGG | 0.502963 | 3.4:-55065933 | None:intergenic |
| TAAAAGGGATTGTTATTGCA+AGG | 0.505129 | 3.4:+55066389 | MS.gene04266:CDS |
| GTATCCTCTAGAGATGAGTC+TGG | 0.510292 | 3.4:+55065861 | MS.gene04266:CDS |
| GATATTGGGTTGATTATTGG+TGG | 0.510439 | 3.4:+55065462 | MS.gene04266:CDS |
| AACCGCGAGGCACATTATGC+AGG | 0.510916 | 3.4:+55066049 | MS.gene04266:CDS |
| ACAGAACCATGCTGAAATGA+AGG | 0.517294 | 3.4:-55065903 | None:intergenic |
| TGGAATTGGTTGCATTGGAA+AGG | 0.518037 | 3.4:+55065206 | MS.gene04266:CDS |
| CAGGTATTCACCTAACATAA+AGG | 0.524817 | 3.4:+55067031 | MS.gene04266:intron |
| CAGAGCTGGGTCTGGTGTTG+CGG | 0.531967 | 3.4:+55065440 | MS.gene04266:CDS |
| TCTAGAGATGAGTCTGGTAA+TGG | 0.532054 | 3.4:+55065867 | MS.gene04266:CDS |
| CTAATCTCTTAAATTTGATG+CGG | 0.540456 | 3.4:-55066022 | None:intergenic |
| TCATATATCATAGGAAGTAC+CGG | 0.546725 | 3.4:+55066342 | MS.gene04266:intron |
| CTCTTGCTTCGTCTACGCAT+CGG | 0.550730 | 3.4:+55065270 | MS.gene04266:CDS |
| GAGGTACCTGATATAAAGCC+TGG | 0.550742 | 3.4:+55066205 | MS.gene04266:CDS |
| CGGTGGTTTACTGAATTAGA+CGG | 0.551469 | 3.4:+55065290 | MS.gene04266:CDS |
| GAAACACGCCTCTTGTTCTC+CGG | 0.554578 | 3.4:-55066361 | None:intergenic |
| TTCAGGTGCTAAGCAGAGCT+GGG | 0.555663 | 3.4:+55065427 | MS.gene04266:CDS |
| AGGCAATTCAGGTTCTGGTA+AGG | 0.561434 | 3.4:-55065997 | None:intergenic |
| TTTAGACAAAGAAGCAGTGG+AGG | 0.569964 | 3.4:+55066165 | MS.gene04266:CDS |
| TTGCTTCGTCTACGCATCGG+TGG | 0.572156 | 3.4:+55065273 | MS.gene04266:CDS |
| GTTATTGCAAGGCGTAATTG+TGG | 0.573207 | 3.4:+55066400 | MS.gene04266:CDS |
| GCGTAGACGAAGCAAGAGGA+TGG | 0.575155 | 3.4:-55065265 | None:intergenic |
| TCAAATATTCAATTGCACAA+TGG | 0.596237 | 3.4:+55065237 | MS.gene04266:CDS |
| TAAACCTGCTTCGGAAATGA+GGG | 0.601675 | 3.4:-55065932 | None:intergenic |
| CTCTTAAATTTGATGCGGGG+AGG | 0.603126 | 3.4:-55066017 | None:intergenic |
| AGGAAGTACCGGAGAACAAG+AGG | 0.604082 | 3.4:+55066353 | MS.gene04266:intron |
| GGAGGTGAAAGAACAGAGAG+AGG | 0.615909 | 3.4:+55066186 | MS.gene04266:CDS |
| GTCCACAGTTCTGGTTTGTG+TGG | 0.617070 | 3.4:+55065392 | MS.gene04266:CDS |
| TTGAGCTGCACAATATAACC+AGG | 0.624977 | 3.4:-55066223 | None:intergenic |
| AGAATCAACAGAATTTGTCT+CGG | 0.631893 | 3.4:-55065961 | None:intergenic |
| TACATTCAGACTTAGAAGGA+TGG | 0.634854 | 3.4:+55066432 | MS.gene04266:CDS |
| GAGCCAAACTCTACTACCTG+AGG | 0.635973 | 3.4:+55067087 | MS.gene04266:CDS |
| AGATTGCCTTCATTTCAGCA+TGG | 0.636188 | 3.4:+55065897 | MS.gene04266:CDS |
| ACTTAGAAGGATGGTAGCTG+GGG | 0.639779 | 3.4:+55066441 | MS.gene04266:CDS |
| CTAGAGGATACATTCGTCTG+AGG | 0.640083 | 3.4:-55065849 | None:intergenic |
| AATCTCTTAAATTTGATGCG+GGG | 0.640370 | 3.4:-55066020 | None:intergenic |
| ATTACCAGACTCATCTCTAG+AGG | 0.648515 | 3.4:-55065865 | None:intergenic |
| CGATGCGTAGACGAAGCAAG+AGG | 0.663330 | 3.4:-55065269 | None:intergenic |
| GTCCACACAAACCAGAACTG+TGG | 0.675331 | 3.4:-55065394 | None:intergenic |
| AGCCAAACTCTACTACCTGA+GGG | 0.676552 | 3.4:+55067088 | MS.gene04266:CDS |
| TTATATTGTGCAGCTCAAAG+TGG | 0.710180 | 3.4:+55066228 | MS.gene04266:CDS |
| TGCCTGCATAATGTGCCTCG+CGG | 0.710446 | 3.4:-55066051 | None:intergenic |
| AGAGATTAGATAAAACCGCG+AGG | 0.761190 | 3.4:+55066036 | MS.gene04266:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCATTTGTAAAAATTGT+TGG | + | chr3.4:55066120-55066139 | MS.gene04266:intron | 15.0% |
| !! | TTATTTGAATTATTGTTATG+AGG | + | chr3.4:55066761-55066780 | MS.gene04266:intron | 15.0% |
| !!! | ATTCTTTTTATTCTCTTTTT+TGG | - | chr3.4:55066705-55066724 | None:intergenic | 15.0% |
| !!! | TTCTTTTTATTCTCTTTTTT+GGG | - | chr3.4:55066704-55066723 | None:intergenic | 15.0% |
| !! | AAGCACAATTAACTTTAAAT+TGG | - | chr3.4:55066964-55066983 | None:intergenic | 20.0% |
| !! | AAGCAGATATACATAAATTA+TGG | - | chr3.4:55066506-55066525 | None:intergenic | 20.0% |
| !! | AGATATACATAAATTATGGA+AGG | - | chr3.4:55066502-55066521 | None:intergenic | 20.0% |
| !!! | AGAATATGATGATGAATTTA+AGG | + | chr3.4:55066735-55066754 | MS.gene04266:intron | 20.0% |
| !!! | GTATTTTCTAAAGTAACATA+AGG | - | chr3.4:55066862-55066881 | None:intergenic | 20.0% |
| !!! | TATTTTTTGACTTTTAAGGA+GGG | + | chr3.4:55066637-55066656 | MS.gene04266:intron | 20.0% |
| !!! | TCTCTATTTTTTGACTTTTA+AGG | + | chr3.4:55066633-55066652 | MS.gene04266:intron | 20.0% |
| !!! | TTTTTATGTCTTGTTTTTGT+TGG | + | chr3.4:55065710-55065729 | MS.gene04266:intron | 20.0% |
| ! | AAAAAGTTGTTTATCCAAGT+TGG | + | chr3.4:55065766-55065785 | MS.gene04266:intron | 25.0% |
| ! | AAAAGTTGTTTATCCAAGTT+GGG | + | chr3.4:55065767-55065786 | MS.gene04266:intron | 25.0% |
| ! | AAAATAGAGACATAAATCAC+AGG | - | chr3.4:55066623-55066642 | None:intergenic | 25.0% |
| ! | ACTGTTATGTCATATATCAT+AGG | + | chr3.4:55066333-55066352 | MS.gene04266:intron | 25.0% |
| ! | CTAATCTCTTAAATTTGATG+CGG | - | chr3.4:55066025-55066044 | None:intergenic | 25.0% |
| ! | TAATAAAACAGCCTAATAAC+CGG | - | chr3.4:55065566-55065585 | None:intergenic | 25.0% |
| ! | TAATCTCTTAAATTTGATGC+GGG | - | chr3.4:55066024-55066043 | None:intergenic | 25.0% |
| ! | TCAAATATTCAATTGCACAA+TGG | + | chr3.4:55065237-55065256 | MS.gene04266:CDS | 25.0% |
| !! | AACAATCTAAAGTGATTTCT+TGG | + | chr3.4:55065186-55065205 | MS.gene04266:CDS | 25.0% |
| !! | CTTCTTTGTCTAAAATCTAA+AGG | - | chr3.4:55066159-55066178 | None:intergenic | 25.0% |
| !! | GGTCTGTTTGAATAAATTTT+TGG | - | chr3.4:55066841-55066860 | None:intergenic | 25.0% |
| !!! | ATATTCATGCTATTTTGAAC+TGG | + | chr3.4:55066586-55066605 | MS.gene04266:intron | 25.0% |
| !!! | CTATTTTTTGACTTTTAAGG+AGG | + | chr3.4:55066636-55066655 | MS.gene04266:intron | 25.0% |
| !!! | GTTTTATTAGTTGAGCAATT+AGG | + | chr3.4:55065577-55065596 | MS.gene04266:intron | 25.0% |
| AATAAAACAGCCTAATAACC+GGG | - | chr3.4:55065565-55065584 | None:intergenic | 30.0% | |
| AATCTCTTAAATTTGATGCG+GGG | - | chr3.4:55066023-55066042 | None:intergenic | 30.0% | |
| ACCTAACATAAAGGAGATAA+AGG | + | chr3.4:55067040-55067059 | MS.gene04266:CDS | 30.0% | |
| ACCTTTATCTCCTTTATGTT+AGG | - | chr3.4:55067044-55067063 | None:intergenic | 30.0% | |
| AGAATCAACAGAATTTGTCT+CGG | - | chr3.4:55065964-55065983 | None:intergenic | 30.0% | |
| CTAAAGTGATTTCTTGGAAT+TGG | + | chr3.4:55065192-55065211 | MS.gene04266:CDS | 30.0% | |
| CTAATTGATACTCTTATGAC+AGG | + | chr3.4:55067012-55067031 | MS.gene04266:intron | 30.0% | |
| TTTGTCACAATTTCTTGTGT+AGG | + | chr3.4:55065815-55065834 | MS.gene04266:intron | 30.0% | |
| ! | AGGCGTGTTTCTATTATAAA+AGG | + | chr3.4:55066373-55066392 | MS.gene04266:CDS | 30.0% |
| ! | ATATAACCAGGCTTTATATC+AGG | - | chr3.4:55066214-55066233 | None:intergenic | 30.0% |
| ! | GGCGTGTTTCTATTATAAAA+GGG | + | chr3.4:55066374-55066393 | MS.gene04266:CDS | 30.0% |
| ! | TAAAAGGGATTGTTATTGCA+AGG | + | chr3.4:55066389-55066408 | MS.gene04266:CDS | 30.0% |
| ! | TCATATATCATAGGAAGTAC+CGG | + | chr3.4:55066342-55066361 | MS.gene04266:intron | 30.0% |
| !! | ATAAGAGTATCAATTAGCTC+AGG | - | chr3.4:55067009-55067028 | None:intergenic | 30.0% |
| ACACTACATTCAGACTTAGA+AGG | + | chr3.4:55066428-55066447 | MS.gene04266:CDS | 35.0% | |
| ATGGAAGGTAATACTTACAG+TGG | - | chr3.4:55066487-55066506 | None:intergenic | 35.0% | |
| CAGGTATTCACCTAACATAA+AGG | + | chr3.4:55067031-55067050 | MS.gene04266:intron | 35.0% | |
| TACATTCAGACTTAGAAGGA+TGG | + | chr3.4:55066432-55066451 | MS.gene04266:CDS | 35.0% | |
| TGGAAGGTAATACTTACAGT+GGG | - | chr3.4:55066486-55066505 | None:intergenic | 35.0% | |
| TTATATTGTGCAGCTCAAAG+TGG | + | chr3.4:55066228-55066247 | MS.gene04266:CDS | 35.0% | |
| TTTCTTGGAATTGGTTGCAT+TGG | + | chr3.4:55065201-55065220 | MS.gene04266:CDS | 35.0% | |
| ! | AAGGAGGGTGTAGTTAAAAT+AGG | + | chr3.4:55066652-55066671 | MS.gene04266:intron | 35.0% |
| ! | CAAGTTGGGATAATCTCTTA+GGG | + | chr3.4:55065781-55065800 | MS.gene04266:intron | 35.0% |
| ! | GATTTTAGACAAAGAAGCAG+TGG | + | chr3.4:55066162-55066181 | MS.gene04266:intron | 35.0% |
| !! | GATATTGGGTTGATTATTGG+TGG | + | chr3.4:55065462-55065481 | MS.gene04266:CDS | 35.0% |
| !!! | ATCTGATTTTTGCTGTTGTC+AGG | + | chr3.4:55065368-55065387 | MS.gene04266:intron | 35.0% |
| AACTCGACTCAACAAAACTC+CGG | - | chr3.4:55066546-55066565 | None:intergenic | 40.0% | |
| ACAGAACCATGCTGAAATGA+AGG | - | chr3.4:55065906-55065925 | None:intergenic | 40.0% | |
| AGAGATTAGATAAAACCGCG+AGG | + | chr3.4:55066036-55066055 | MS.gene04266:CDS | 40.0% | |
| AGATTGCCTTCATTTCAGCA+TGG | + | chr3.4:55065897-55065916 | MS.gene04266:CDS | 40.0% | |
| ATAAACCTGCTTCGGAAATG+AGG | - | chr3.4:55065936-55065955 | None:intergenic | 40.0% | |
| ATGCTGAAATGAAGGCAATC+TGG | - | chr3.4:55065898-55065917 | None:intergenic | 40.0% | |
| ATTACCAGACTCATCTCTAG+AGG | - | chr3.4:55065868-55065887 | None:intergenic | 40.0% | |
| ATTGGTGGAATTAGTGTCAG+TGG | + | chr3.4:55065477-55065496 | MS.gene04266:intron | 40.0% | |
| CAACACAAAACGCATTGAAC+TGG | - | chr3.4:55066934-55066953 | None:intergenic | 40.0% | |
| CAATGATAGTATGGCATGCA+TGG | + | chr3.4:55065315-55065334 | MS.gene04266:intron | 40.0% | |
| CCTAAGAGATTATCCCAACT+TGG | - | chr3.4:55065783-55065802 | None:intergenic | 40.0% | |
| CGGTGGTTTACTGAATTAGA+CGG | + | chr3.4:55065290-55065309 | MS.gene04266:CDS | 40.0% | |
| GTTATTGCAAGGCGTAATTG+TGG | + | chr3.4:55066400-55066419 | MS.gene04266:CDS | 40.0% | |
| TAAACCTGCTTCGGAAATGA+GGG | - | chr3.4:55065935-55065954 | None:intergenic | 40.0% | |
| TAGACGGCACAATGATAGTA+TGG | + | chr3.4:55065306-55065325 | MS.gene04266:intron | 40.0% | |
| TATCTGCATACTGTCTTAGC+AGG | + | chr3.4:55065627-55065646 | MS.gene04266:intron | 40.0% | |
| TCTAGAGATGAGTCTGGTAA+TGG | + | chr3.4:55065867-55065886 | MS.gene04266:CDS | 40.0% | |
| TGGAATTGGTTGCATTGGAA+AGG | + | chr3.4:55065206-55065225 | MS.gene04266:CDS | 40.0% | |
| TTGAGCTGCACAATATAACC+AGG | - | chr3.4:55066226-55066245 | None:intergenic | 40.0% | |
| TTGGTGGAATTAGTGTCAGT+GGG | + | chr3.4:55065478-55065497 | MS.gene04266:intron | 40.0% | |
| TTTAGACAAAGAAGCAGTGG+AGG | + | chr3.4:55066165-55066184 | MS.gene04266:CDS | 40.0% | |
| ! | CAATGTGCGTTTTGTGTACA+TGG | + | chr3.4:55066905-55066924 | MS.gene04266:intron | 40.0% |
| ! | CCAAGTTGGGATAATCTCTT+AGG | + | chr3.4:55065780-55065799 | MS.gene04266:intron | 40.0% |
| !! | GCGGATATTGGGTTGATTAT+TGG | + | chr3.4:55065459-55065478 | MS.gene04266:CDS | 40.0% |
| ACTTAGAAGGATGGTAGCTG+GGG | + | chr3.4:55066441-55066460 | MS.gene04266:CDS | 45.0% | |
| AGACTTAGAAGGATGGTAGC+TGG | + | chr3.4:55066439-55066458 | MS.gene04266:CDS | 45.0% | |
| AGCCAAACTCTACTACCTGA+GGG | + | chr3.4:55067088-55067107 | MS.gene04266:CDS | 45.0% | |
| ATCCCTCAGGTAGTAGAGTT+TGG | - | chr3.4:55067093-55067112 | None:intergenic | 45.0% | |
| CGGTAGACATAAACCTGCTT+CGG | - | chr3.4:55065944-55065963 | None:intergenic | 45.0% | |
| CTAGAGGATACATTCGTCTG+AGG | - | chr3.4:55065852-55065871 | None:intergenic | 45.0% | |
| CTCTTAAATTTGATGCGGGG+AGG | - | chr3.4:55066020-55066039 | None:intergenic | 45.0% | |
| CTTCATGATCCAGTGAAACC+CGG | + | chr3.4:55065544-55065563 | MS.gene04266:intron | 45.0% | |
| GACTTAGAAGGATGGTAGCT+GGG | + | chr3.4:55066440-55066459 | MS.gene04266:CDS | 45.0% | |
| TCCAGTGAAACCCGGTTATT+AGG | + | chr3.4:55065552-55065571 | MS.gene04266:intron | 45.0% | |
| TGGTGGAATTAGTGTCAGTG+GGG | + | chr3.4:55065479-55065498 | MS.gene04266:intron | 45.0% | |
| TGGTTGCATTGGAAAGGAAC+TGG | + | chr3.4:55065212-55065231 | MS.gene04266:CDS | 45.0% | |
| ! | AGGCAATTCAGGTTCTGGTA+AGG | - | chr3.4:55066000-55066019 | None:intergenic | 45.0% |
| ! | GAGGTACCTGATATAAAGCC+TGG | + | chr3.4:55066205-55066224 | MS.gene04266:CDS | 45.0% |
| ! | GGGCATTCATTTTATCCCTC+AGG | - | chr3.4:55067106-55067125 | None:intergenic | 45.0% |
| ! | GTATCCTCTAGAGATGAGTC+TGG | + | chr3.4:55065861-55065880 | MS.gene04266:CDS | 45.0% |
| ACTCAACAAAACTCCGGCCA+AGG | - | chr3.4:55066540-55066559 | None:intergenic | 50.0% | |
| AGACAAAGAAGCAGTGGAGG+AGG | + | chr3.4:55066168-55066187 | MS.gene04266:CDS | 50.0% | |
| CTCTTGCTTCGTCTACGCAT+CGG | + | chr3.4:55065270-55065289 | MS.gene04266:CDS | 50.0% | |
| CTGCTTGTAACTCTGCACCT+TGG | + | chr3.4:55066520-55066539 | MS.gene04266:intron | 50.0% | |
| GAAACACGCCTCTTGTTCTC+CGG | - | chr3.4:55066364-55066383 | None:intergenic | 50.0% | |
| GAGCCAAACTCTACTACCTG+AGG | + | chr3.4:55067087-55067106 | MS.gene04266:CDS | 50.0% | |
| GCCTAATAACCGGGTTTCAC+TGG | - | chr3.4:55065556-55065575 | None:intergenic | 50.0% | |
| GGAGGTGAAAGAACAGAGAG+AGG | + | chr3.4:55066186-55066205 | MS.gene04266:CDS | 50.0% | |
| GTCCACACAAACCAGAACTG+TGG | - | chr3.4:55065397-55065416 | None:intergenic | 50.0% | |
| TTCAGGTGCTAAGCAGAGCT+GGG | + | chr3.4:55065427-55065446 | MS.gene04266:CDS | 50.0% | |
| TTGTAACTCTGCACCTTGGC+CGG | + | chr3.4:55066524-55066543 | MS.gene04266:intron | 50.0% | |
| TTGTCCCTCATTTCCGAAGC+AGG | + | chr3.4:55065928-55065947 | MS.gene04266:CDS | 50.0% | |
| ! | AGGCTGTGTCCTTTTGGTCT+GGG | + | chr3.4:55065647-55065666 | MS.gene04266:intron | 50.0% |
| ! | CTTAGCAGGCTGTGTCCTTT+TGG | + | chr3.4:55065641-55065660 | MS.gene04266:intron | 50.0% |
| ! | GGGGGTTTGGCATTTTTCGT+TGG | + | chr3.4:55065667-55065686 | MS.gene04266:intron | 50.0% |
| !! | AGGAAGTACCGGAGAACAAG+AGG | + | chr3.4:55066353-55066372 | MS.gene04266:intron | 50.0% |
| !! | CAGTTCTGGTTTGTGTGGAC+AGG | + | chr3.4:55065397-55065416 | MS.gene04266:CDS | 50.0% |
| !! | GGTCTGGTGTTGCGGATATT+GGG | + | chr3.4:55065448-55065467 | MS.gene04266:CDS | 50.0% |
| !! | GTCCACAGTTCTGGTTTGTG+TGG | + | chr3.4:55065392-55065411 | MS.gene04266:CDS | 50.0% |
| AACCGCGAGGCACATTATGC+AGG | + | chr3.4:55066049-55066068 | MS.gene04266:CDS | 55.0% | |
| AGAAGGATGGTAGCTGGGGT+TGG | + | chr3.4:55066445-55066464 | MS.gene04266:CDS | 55.0% | |
| CGATGCGTAGACGAAGCAAG+AGG | - | chr3.4:55065272-55065291 | None:intergenic | 55.0% | |
| CTTCAGGTGCTAAGCAGAGC+TGG | + | chr3.4:55065426-55065445 | MS.gene04266:CDS | 55.0% | |
| GAAGGATGGTAGCTGGGGTT+GGG | + | chr3.4:55066446-55066465 | MS.gene04266:CDS | 55.0% | |
| GCGTAGACGAAGCAAGAGGA+TGG | - | chr3.4:55065268-55065287 | None:intergenic | 55.0% | |
| GGAATTAGTGTCAGTGGGGC+AGG | + | chr3.4:55065483-55065502 | MS.gene04266:intron | 55.0% | |
| TGCCAAACCCCCAGACCAAA+AGG | - | chr3.4:55065659-55065678 | None:intergenic | 55.0% | |
| TGCCTGCATAATGTGCCTCG+CGG | - | chr3.4:55066054-55066073 | None:intergenic | 55.0% | |
| TGTGGACAGGTCTGGACTTC+AGG | + | chr3.4:55065410-55065429 | MS.gene04266:CDS | 55.0% | |
| TTGATGCGGGGAGGCAATTC+AGG | - | chr3.4:55066011-55066030 | None:intergenic | 55.0% | |
| TTGCTTCGTCTACGCATCGG+TGG | + | chr3.4:55065273-55065292 | MS.gene04266:CDS | 55.0% | |
| TTGTCAGGCGTCCACAGTTC+TGG | + | chr3.4:55065383-55065402 | MS.gene04266:intron | 55.0% | |
| ! | CAGGCTGTGTCCTTTTGGTC+TGG | + | chr3.4:55065646-55065665 | MS.gene04266:intron | 55.0% |
| ! | CTGGTTTGTGTGGACAGGTC+TGG | + | chr3.4:55065402-55065421 | MS.gene04266:CDS | 55.0% |
| ! | GCTGTGTCCTTTTGGTCTGG+GGG | + | chr3.4:55065649-55065668 | MS.gene04266:intron | 55.0% |
| ! | GGCTGTGTCCTTTTGGTCTG+GGG | + | chr3.4:55065648-55065667 | MS.gene04266:intron | 55.0% |
| ! | GTCCTTTTGGTCTGGGGGTT+TGG | + | chr3.4:55065654-55065673 | MS.gene04266:intron | 55.0% |
| !! | GGGTCTGGTGTTGCGGATAT+TGG | + | chr3.4:55065447-55065466 | MS.gene04266:CDS | 55.0% |
| GTGCTAAGCAGAGCTGGGTC+TGG | + | chr3.4:55065432-55065451 | MS.gene04266:CDS | 60.0% | |
| ! | CAGAGCTGGGTCTGGTGTTG+CGG | + | chr3.4:55065440-55065459 | MS.gene04266:CDS | 60.0% |
| ! | CGGGGAGGCAATTCAGGTTC+TGG | - | chr3.4:55066005-55066024 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 55065179 | 55067133 | 55065179 | ID=MS.gene04266 |
| chr3.4 | mRNA | 55065179 | 55067133 | 55065179 | ID=MS.gene04266.t1;Parent=MS.gene04266 |
| chr3.4 | exon | 55065179 | 55065322 | 55065179 | ID=MS.gene04266.t1.exon1;Parent=MS.gene04266.t1 |
| chr3.4 | CDS | 55065179 | 55065322 | 55065179 | ID=cds.MS.gene04266.t1;Parent=MS.gene04266.t1 |
| chr3.4 | exon | 55065390 | 55065491 | 55065390 | ID=MS.gene04266.t1.exon2;Parent=MS.gene04266.t1 |
| chr3.4 | CDS | 55065390 | 55065491 | 55065390 | ID=cds.MS.gene04266.t1;Parent=MS.gene04266.t1 |
| chr3.4 | exon | 55065837 | 55066070 | 55065837 | ID=MS.gene04266.t1.exon3;Parent=MS.gene04266.t1 |
| chr3.4 | CDS | 55065837 | 55066070 | 55065837 | ID=cds.MS.gene04266.t1;Parent=MS.gene04266.t1 |
| chr3.4 | exon | 55066163 | 55066249 | 55066163 | ID=MS.gene04266.t1.exon4;Parent=MS.gene04266.t1 |
| chr3.4 | CDS | 55066163 | 55066249 | 55066163 | ID=cds.MS.gene04266.t1;Parent=MS.gene04266.t1 |
| chr3.4 | exon | 55066355 | 55066488 | 55066355 | ID=MS.gene04266.t1.exon5;Parent=MS.gene04266.t1 |
| chr3.4 | CDS | 55066355 | 55066488 | 55066355 | ID=cds.MS.gene04266.t1;Parent=MS.gene04266.t1 |
| chr3.4 | exon | 55067034 | 55067133 | 55067034 | ID=MS.gene04266.t1.exon6;Parent=MS.gene04266.t1 |
| chr3.4 | CDS | 55067034 | 55067133 | 55067034 | ID=cds.MS.gene04266.t1;Parent=MS.gene04266.t1 |
| Gene Sequence |
| Protein sequence |
