Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95386.t1 | XP_013460014.1 | 95.7 | 185 | 8 | 0 | 77 | 261 | 35 | 219 | 2.40E-90 | 342 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95386.t1 | P82413 | 56.1 | 132 | 54 | 1 | 129 | 260 | 102 | 229 | 3.3e-32 | 140.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95386.t1 | A0A072V7A1 | 95.7 | 185 | 8 | 0 | 77 | 261 | 35 | 219 | 1.7e-90 | 342.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene94930 | MS.gene95386 | PPI |
| MS.gene95386 | MS.gene04216 | PPI |
| MS.gene95386 | MS.gene04266 | PPI |
| MS.gene04216 | MS.gene95386 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95386.t1 | MTR_3g058620 | 95.676 | 185 | 8 | 0 | 77 | 261 | 35 | 219 | 5.50e-128 | 362 |
| MS.gene95386.t1 | MTR_5g013300 | 34.454 | 238 | 127 | 4 | 26 | 257 | 8 | 222 | 4.74e-40 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95386.t1 | AT5G11750 | 75.839 | 149 | 33 | 2 | 115 | 261 | 80 | 227 | 5.83e-76 | 230 |
| MS.gene95386.t1 | AT4G11630 | 75.342 | 146 | 33 | 1 | 116 | 261 | 81 | 223 | 3.76e-75 | 228 |
| MS.gene95386.t1 | AT5G11750 | 65.318 | 173 | 33 | 3 | 115 | 261 | 80 | 251 | 2.81e-70 | 217 |
| MS.gene95386.t1 | AT1G24240 | 73.510 | 151 | 37 | 1 | 111 | 261 | 73 | 220 | 6.16e-66 | 204 |
| MS.gene95386.t1 | AT4G17560 | 48.966 | 145 | 67 | 1 | 116 | 260 | 84 | 221 | 2.58e-37 | 131 |
| MS.gene95386.t1 | AT5G47190 | 59.259 | 108 | 44 | 0 | 153 | 260 | 118 | 225 | 1.86e-36 | 129 |
| MS.gene95386.t1 | AT1G24240 | 64.865 | 74 | 23 | 1 | 111 | 184 | 73 | 143 | 7.60e-24 | 94.7 |
Find 70 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCGTGTTTCTATTATAAA+AGG | 0.194759 | 3.3:-47830026 | MS.gene95386:CDS |
| AACAATCTAAAGTGATTTCT+TGG | 0.197601 | 3.3:-47831208 | MS.gene95386:CDS |
| TTGATGCGGGGAGGCAATTC+AGG | 0.268789 | 3.3:+47830391 | None:intergenic |
| CTAAAGTGATTTCTTGGAAT+TGG | 0.269997 | 3.3:-47831202 | MS.gene95386:CDS |
| TGTGGACAGGTCAGGACTTC+AGG | 0.275666 | 3.3:-47830989 | MS.gene95386:intron |
| GGGTCTGGTATTGCGGATAT+TGG | 0.279683 | 3.3:-47830952 | MS.gene95386:CDS |
| ATCCCTCAGGTAGTAGAGTT+TGG | 0.318153 | 3.3:+47829309 | None:intergenic |
| GCGGATATTGGGTTGATTAT+TGG | 0.320150 | 3.3:-47830940 | MS.gene95386:CDS |
| ACCTTTATCTCCTTTATGTT+AGG | 0.356884 | 3.3:+47829358 | None:intergenic |
| GGTCTGGTATTGCGGATATT+GGG | 0.358510 | 3.3:-47830951 | MS.gene95386:CDS |
| ACCTAACATAAAGGAGATAA+AGG | 0.358575 | 3.3:-47829359 | MS.gene95386:CDS |
| CGGGGAGGCAATTCAGGTTC+TGG | 0.369112 | 3.3:+47830397 | None:intergenic |
| TAGACTGCACAATGATAGTA+TGG | 0.394439 | 3.3:-47831088 | MS.gene95386:CDS |
| ACACTACATTCAGACTTAGA+AGG | 0.398714 | 3.3:-47829971 | MS.gene95386:CDS |
| GAAGGATGGTAGCTGGGGTT+GGG | 0.398853 | 3.3:-47829953 | MS.gene95386:CDS |
| CTTCAGGTGCTAAGCAGAGC+TGG | 0.399267 | 3.3:-47830973 | MS.gene95386:CDS |
| TTGTCCCTCATTTCCGAAGC+AGG | 0.430695 | 3.3:-47830471 | MS.gene95386:CDS |
| ATATAACCAGGCTTTATATC+AGG | 0.433635 | 3.3:+47830188 | None:intergenic |
| AGAAGGATGGTAGCTGGGGT+TGG | 0.434672 | 3.3:-47829954 | MS.gene95386:CDS |
| TGGTTGCATTGGAAAGGAAC+TGG | 0.439286 | 3.3:-47831182 | MS.gene95386:CDS |
| ATGCTGAAATGAAGGCAATC+TGG | 0.441606 | 3.3:+47830504 | None:intergenic |
| CGGTAGACATAAACCTGCTT+CGG | 0.445201 | 3.3:+47830458 | None:intergenic |
| TAATCTCTTAAATTTGATGC+GGG | 0.446449 | 3.3:+47830378 | None:intergenic |
| GACTTAGAAGGATGGTAGCT+GGG | 0.461287 | 3.3:-47829959 | MS.gene95386:CDS |
| GGCGTGTTTCTATTATAAAA+GGG | 0.465947 | 3.3:-47830025 | MS.gene95386:CDS |
| TTTCTTGGAATTGGTTGCAT+TGG | 0.472499 | 3.3:-47831193 | MS.gene95386:CDS |
| AGACTTAGAAGGATGGTAGC+TGG | 0.494744 | 3.3:-47829960 | MS.gene95386:CDS |
| AGACAAAGAAGCAGTGGAGG+AGG | 0.496174 | 3.3:-47830231 | MS.gene95386:CDS |
| GTGCTAAGCAGAGCTGGGTC+TGG | 0.496723 | 3.3:-47830967 | MS.gene95386:CDS |
| ATAAACCTGCTTCGGAAATG+AGG | 0.502963 | 3.3:+47830466 | None:intergenic |
| TAAAAGGGATTGTTATTGCA+AGG | 0.505129 | 3.3:-47830010 | MS.gene95386:CDS |
| GTATCCTCTAGAGATGAGTC+TGG | 0.510292 | 3.3:-47830538 | MS.gene95386:CDS |
| GATATTGGGTTGATTATTGG+TGG | 0.510439 | 3.3:-47830937 | MS.gene95386:CDS |
| AACCGCGAGGCACATTATGC+AGG | 0.510916 | 3.3:-47830350 | MS.gene95386:intron |
| ACAGAACCATGCTGAAATGA+AGG | 0.517294 | 3.3:+47830496 | None:intergenic |
| TGGAATTGGTTGCATTGGAA+AGG | 0.518037 | 3.3:-47831188 | MS.gene95386:CDS |
| CAGGTATTCACCTAACATAA+AGG | 0.524817 | 3.3:-47829368 | MS.gene95386:CDS |
| TCTAGAGATGAGTCTGGTAA+TGG | 0.532054 | 3.3:-47830532 | MS.gene95386:CDS |
| CTAATCTCTTAAATTTGATG+CGG | 0.540456 | 3.3:+47830377 | None:intergenic |
| TCATATATCATAGGAAGTAC+CGG | 0.546725 | 3.3:-47830057 | MS.gene95386:intron |
| CTCTTGCTTCGTCTACGCAT+CGG | 0.550730 | 3.3:-47831124 | MS.gene95386:CDS |
| GAGGTACCTGATATAAAGCC+TGG | 0.550742 | 3.3:-47830194 | MS.gene95386:CDS |
| GAAACACGCCTCTTGTTCTC+CGG | 0.554578 | 3.3:+47830038 | None:intergenic |
| CAGAGCTGGGTCTGGTATTG+CGG | 0.555197 | 3.3:-47830959 | MS.gene95386:CDS |
| TTCAGGTGCTAAGCAGAGCT+GGG | 0.555663 | 3.3:-47830972 | MS.gene95386:CDS |
| AGGCAATTCAGGTTCTGGTA+AGG | 0.561434 | 3.3:+47830402 | None:intergenic |
| TTTAGACAAAGAAGCAGTGG+AGG | 0.569964 | 3.3:-47830234 | MS.gene95386:CDS |
| TTGCTTCGTCTACGCATCGG+TGG | 0.572156 | 3.3:-47831121 | MS.gene95386:CDS |
| GTTATTGCAAGGCGTAATTG+TGG | 0.573207 | 3.3:-47829999 | MS.gene95386:CDS |
| GCGTAGACGAAGCAAGAGGA+TGG | 0.575155 | 3.3:+47831129 | None:intergenic |
| CAATGATAGTATGGCATGCA+TGG | 0.583715 | 3.3:-47831079 | MS.gene95386:intron |
| TCAAATATTCAATTGCACAA+TGG | 0.596237 | 3.3:-47831157 | MS.gene95386:CDS |
| TAAACCTGCTTCGGAAATGA+GGG | 0.601675 | 3.3:+47830467 | None:intergenic |
| CTCTTAAATTTGATGCGGGG+AGG | 0.603126 | 3.3:+47830382 | None:intergenic |
| AGGAAGTACCGGAGAACAAG+AGG | 0.604082 | 3.3:-47830046 | MS.gene95386:CDS |
| GGAGGTGAAAGAACAGAGAG+AGG | 0.615909 | 3.3:-47830213 | MS.gene95386:CDS |
| TTGAGCTGCACAATATAACC+AGG | 0.624977 | 3.3:+47830176 | None:intergenic |
| AGAATCAACAGAATTTGTCT+CGG | 0.631893 | 3.3:+47830438 | None:intergenic |
| TACATTCAGACTTAGAAGGA+TGG | 0.634854 | 3.3:-47829967 | MS.gene95386:CDS |
| GAGCCAAACTCTACTACCTG+AGG | 0.635973 | 3.3:-47829312 | MS.gene95386:CDS |
| AGATTGCCTTCATTTCAGCA+TGG | 0.636188 | 3.3:-47830502 | MS.gene95386:CDS |
| ACTTAGAAGGATGGTAGCTG+GGG | 0.639779 | 3.3:-47829958 | MS.gene95386:CDS |
| CTAGAGGATACATTCGTCTG+AGG | 0.640083 | 3.3:+47830550 | None:intergenic |
| AATCTCTTAAATTTGATGCG+GGG | 0.640370 | 3.3:+47830379 | None:intergenic |
| ATTACCAGACTCATCTCTAG+AGG | 0.648515 | 3.3:+47830534 | None:intergenic |
| CGATGCGTAGACGAAGCAAG+AGG | 0.663330 | 3.3:+47831125 | None:intergenic |
| AGCCAAACTCTACTACCTGA+GGG | 0.676552 | 3.3:-47829311 | MS.gene95386:CDS |
| TTATATTGTGCAGCTCAAAG+TGG | 0.710180 | 3.3:-47830171 | MS.gene95386:intron |
| TGCCTGCATAATGTGCCTCG+CGG | 0.710446 | 3.3:+47830348 | None:intergenic |
| AGAGATTAGATAAAACCGCG+AGG | 0.761190 | 3.3:-47830363 | MS.gene95386:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTAAATTATTGTTATG+AGG | - | chr3.3:47830865-47830884 | MS.gene95386:intron | 10.0% |
| !! | TAATCATTTGTAAAAATTGT+TGG | - | chr3.3:47830224-47830243 | MS.gene95386:CDS | 15.0% |
| !!! | ATTCTTTTTATTCTCTTTTT+TGG | + | chr3.3:47830809-47830828 | None:intergenic | 15.0% |
| !!! | TGTGTTTTGTTTTAAATAAA+GGG | - | chr3.3:47830189-47830208 | MS.gene95386:CDS | 15.0% |
| !!! | TTCTTTTTATTCTCTTTTTT+GGG | + | chr3.3:47830808-47830827 | None:intergenic | 15.0% |
| !! | AAGCACAATTAACTTTAAAT+TGG | + | chr3.3:47831068-47831087 | None:intergenic | 20.0% |
| !! | AAGCAGATATACATAAATTA+TGG | + | chr3.3:47830610-47830629 | None:intergenic | 20.0% |
| !! | AGATATACATAAATTATGGA+AGG | + | chr3.3:47830606-47830625 | None:intergenic | 20.0% |
| !!! | AGAATATGATGATGAATTTA+TGG | - | chr3.3:47830839-47830858 | MS.gene95386:intron | 20.0% |
| !!! | CTGTGTTTTGTTTTAAATAA+AGG | - | chr3.3:47830188-47830207 | MS.gene95386:CDS | 20.0% |
| !!! | GTATTTTCTAAAGTAACATA+AGG | + | chr3.3:47830966-47830985 | None:intergenic | 20.0% |
| ! | AAAAAGTTGTTTATCCAAGT+TGG | - | chr3.3:47829870-47829889 | MS.gene95386:intron | 25.0% |
| ! | AAAAGTTGTTTATCCAAGTT+GGG | - | chr3.3:47829871-47829890 | MS.gene95386:intron | 25.0% |
| ! | ACTGTTATGTCATATATCAT+AGG | - | chr3.3:47830437-47830456 | MS.gene95386:CDS | 25.0% |
| ! | CTAATCTCTTAAATTTGATG+CGG | + | chr3.3:47830129-47830148 | None:intergenic | 25.0% |
| ! | TAATAAAACAGCCTAATAAC+CGG | + | chr3.3:47829670-47829689 | None:intergenic | 25.0% |
| ! | TAATCTCTTAAATTTGATGC+GGG | + | chr3.3:47830128-47830147 | None:intergenic | 25.0% |
| ! | TCAAATATTCAATTGCACAA+TGG | - | chr3.3:47829346-47829365 | MS.gene95386:CDS | 25.0% |
| !! | AACAATCTAAAGTGATTTCT+TGG | - | chr3.3:47829295-47829314 | MS.gene95386:CDS | 25.0% |
| !! | CTTCTTTGTCTAAAATCTAA+AGG | + | chr3.3:47830263-47830282 | None:intergenic | 25.0% |
| !!! | ATATTCATGCTATTTTGAAC+TGG | - | chr3.3:47830690-47830709 | MS.gene95386:intron | 25.0% |
| !!! | GTTTTATTAGTTGAGCAATT+AGG | - | chr3.3:47829681-47829700 | MS.gene95386:intron | 25.0% |
| !!! | TATCTTTTGACTTTTAAGGA+GGG | - | chr3.3:47830741-47830760 | MS.gene95386:intron | 25.0% |
| !!! | TCTCTATCTTTTGACTTTTA+AGG | - | chr3.3:47830737-47830756 | MS.gene95386:intron | 25.0% |
| !!! | TTCTTATGTCTTGTTTTTGT+TGG | - | chr3.3:47829814-47829833 | MS.gene95386:intron | 25.0% |
| AAGATAGAGACATAAATCAC+AGG | + | chr3.3:47830727-47830746 | None:intergenic | 30.0% | |
| AATAAAACAGCCTAATAACC+GGG | + | chr3.3:47829669-47829688 | None:intergenic | 30.0% | |
| AATCTCTTAAATTTGATGCG+GGG | + | chr3.3:47830127-47830146 | None:intergenic | 30.0% | |
| ACCTAACATAAAGGAGATAA+AGG | - | chr3.3:47831144-47831163 | MS.gene95386:CDS | 30.0% | |
| ACCTTTATCTCCTTTATGTT+AGG | + | chr3.3:47831148-47831167 | None:intergenic | 30.0% | |
| AGAATCAACAGAATTTGTCT+CGG | + | chr3.3:47830068-47830087 | None:intergenic | 30.0% | |
| CTAAAGTGATTTCTTGGAAT+TGG | - | chr3.3:47829301-47829320 | MS.gene95386:CDS | 30.0% | |
| CTAATTGATACTCTTATGAC+AGG | - | chr3.3:47831116-47831135 | MS.gene95386:CDS | 30.0% | |
| TTTGTCACAATTTCTTGTGT+AGG | - | chr3.3:47829919-47829938 | MS.gene95386:intron | 30.0% | |
| ! | AGGCGTGTTTCTATTATAAA+AGG | - | chr3.3:47830477-47830496 | MS.gene95386:CDS | 30.0% |
| ! | ATATAACCAGGCTTTATATC+AGG | + | chr3.3:47830318-47830337 | None:intergenic | 30.0% |
| ! | GGCGTGTTTCTATTATAAAA+GGG | - | chr3.3:47830478-47830497 | MS.gene95386:CDS | 30.0% |
| ! | GGTCTGTTTGAATAAGTTTT+TGG | + | chr3.3:47830945-47830964 | None:intergenic | 30.0% |
| ! | TAAAAGGGATTGTTATTGCA+AGG | - | chr3.3:47830493-47830512 | MS.gene95386:CDS | 30.0% |
| ! | TCATATATCATAGGAAGTAC+CGG | - | chr3.3:47830446-47830465 | MS.gene95386:CDS | 30.0% |
| !! | ATAAGAGTATCAATTAGCTC+AGG | + | chr3.3:47831113-47831132 | None:intergenic | 30.0% |
| !!! | CTATCTTTTGACTTTTAAGG+AGG | - | chr3.3:47830740-47830759 | MS.gene95386:intron | 30.0% |
| ACACTACATTCAGACTTAGA+AGG | - | chr3.3:47830532-47830551 | MS.gene95386:CDS | 35.0% | |
| ATGGAAGGTAATACTTACAG+AGG | + | chr3.3:47830591-47830610 | None:intergenic | 35.0% | |
| CAGGTATTCACCTAACATAA+AGG | - | chr3.3:47831135-47831154 | MS.gene95386:CDS | 35.0% | |
| TACATTCAGACTTAGAAGGA+TGG | - | chr3.3:47830536-47830555 | MS.gene95386:CDS | 35.0% | |
| TAGACTGCACAATGATAGTA+TGG | - | chr3.3:47829415-47829434 | MS.gene95386:intron | 35.0% | |
| TGGAAGGTAATACTTACAGA+GGG | + | chr3.3:47830590-47830609 | None:intergenic | 35.0% | |
| TTATATTGTGCAGCTCAAAG+TGG | - | chr3.3:47830332-47830351 | MS.gene95386:intron | 35.0% | |
| TTTCTTGGAATTGGTTGCAT+TGG | - | chr3.3:47829310-47829329 | MS.gene95386:CDS | 35.0% | |
| ! | CAAGTTGGGATAATCTCTTA+GGG | - | chr3.3:47829885-47829904 | MS.gene95386:intron | 35.0% |
| ! | CAATGTGTGTTTTGTGTACA+TGG | - | chr3.3:47831009-47831028 | MS.gene95386:intron | 35.0% |
| ! | GATTTTAGACAAAGAAGCAG+TGG | - | chr3.3:47830266-47830285 | MS.gene95386:intron | 35.0% |
| !! | GATATTGGGTTGATTATTGG+TGG | - | chr3.3:47829566-47829585 | MS.gene95386:intron | 35.0% |
| AACTCGACTCAACAAAACTC+CGG | + | chr3.3:47830650-47830669 | None:intergenic | 40.0% | |
| ACAGAACCATGCTGAAATGA+AGG | + | chr3.3:47830010-47830029 | None:intergenic | 40.0% | |
| AGAGATTAGATAAAACCGCG+AGG | - | chr3.3:47830140-47830159 | MS.gene95386:intron | 40.0% | |
| AGATTGCCTTCATTTCAGCA+TGG | - | chr3.3:47830001-47830020 | MS.gene95386:CDS | 40.0% | |
| ATAAACCTGCTTCGGAAATG+AGG | + | chr3.3:47830040-47830059 | None:intergenic | 40.0% | |
| ATGCTGAAATGAAGGCAATC+TGG | + | chr3.3:47830002-47830021 | None:intergenic | 40.0% | |
| ATTACCAGACTCATCTCTAG+AGG | + | chr3.3:47829972-47829991 | None:intergenic | 40.0% | |
| ATTGGTGGAATTAGTGTCAG+TGG | - | chr3.3:47829581-47829600 | MS.gene95386:intron | 40.0% | |
| CAACACAAAACGCATTGAAC+TGG | + | chr3.3:47831038-47831057 | None:intergenic | 40.0% | |
| CAATGATAGTATGGCATGCA+TGG | - | chr3.3:47829424-47829443 | MS.gene95386:intron | 40.0% | |
| CCTAAGAGATTATCCCAACT+TGG | + | chr3.3:47829887-47829906 | None:intergenic | 40.0% | |
| CTTAATGATCCAGTGAAACC+CGG | - | chr3.3:47829648-47829667 | MS.gene95386:intron | 40.0% | |
| GTTATTGCAAGGCGTAATTG+TGG | - | chr3.3:47830504-47830523 | MS.gene95386:CDS | 40.0% | |
| TAAACCTGCTTCGGAAATGA+GGG | + | chr3.3:47830039-47830058 | None:intergenic | 40.0% | |
| TATCTGCATACTGTCTTAGC+AGG | - | chr3.3:47829731-47829750 | MS.gene95386:intron | 40.0% | |
| TCTAGAGATGAGTCTGGTAA+TGG | - | chr3.3:47829971-47829990 | MS.gene95386:CDS | 40.0% | |
| TGGAATTGGTTGCATTGGAA+AGG | - | chr3.3:47829315-47829334 | MS.gene95386:CDS | 40.0% | |
| TTGAGCTGCACAATATAACC+AGG | + | chr3.3:47830330-47830349 | None:intergenic | 40.0% | |
| TTGGTGGAATTAGTGTCAGT+GGG | - | chr3.3:47829582-47829601 | MS.gene95386:intron | 40.0% | |
| TTTAGACAAAGAAGCAGTGG+AGG | - | chr3.3:47830269-47830288 | MS.gene95386:intron | 40.0% | |
| ! | AAGGAGGGTGTGGTTAAAAT+AGG | - | chr3.3:47830756-47830775 | MS.gene95386:intron | 40.0% |
| ! | CCAAGTTGGGATAATCTCTT+AGG | - | chr3.3:47829884-47829903 | MS.gene95386:intron | 40.0% |
| !! | GCGGATATTGGGTTGATTAT+TGG | - | chr3.3:47829563-47829582 | MS.gene95386:intron | 40.0% |
| !! | TTTGACTTTTAAGGAGGGTG+TGG | - | chr3.3:47830746-47830765 | MS.gene95386:intron | 40.0% |
| !!! | GTCTGATTTTTGCTGTTGTC+AGG | - | chr3.3:47829472-47829491 | MS.gene95386:intron | 40.0% |
| ACTTAGAAGGATGGTAGCTG+GGG | - | chr3.3:47830545-47830564 | MS.gene95386:CDS | 45.0% | |
| AGACTTAGAAGGATGGTAGC+TGG | - | chr3.3:47830543-47830562 | MS.gene95386:CDS | 45.0% | |
| AGCCAAACTCTACTACCTGA+GGG | - | chr3.3:47831192-47831211 | MS.gene95386:CDS | 45.0% | |
| ATCCCTCAGGTAGTAGAGTT+TGG | + | chr3.3:47831197-47831216 | None:intergenic | 45.0% | |
| CGGTAGACATAAACCTGCTT+CGG | + | chr3.3:47830048-47830067 | None:intergenic | 45.0% | |
| CTAGAGGATACATTCGTCTG+AGG | + | chr3.3:47829956-47829975 | None:intergenic | 45.0% | |
| CTCTTAAATTTGATGCGGGG+AGG | + | chr3.3:47830124-47830143 | None:intergenic | 45.0% | |
| GACTTAGAAGGATGGTAGCT+GGG | - | chr3.3:47830544-47830563 | MS.gene95386:CDS | 45.0% | |
| GGTCTGGTATTGCGGATATT+GGG | - | chr3.3:47829552-47829571 | MS.gene95386:intron | 45.0% | |
| TCCAGTGAAACCCGGTTATT+AGG | - | chr3.3:47829656-47829675 | MS.gene95386:intron | 45.0% | |
| TGGTGGAATTAGTGTCAGTG+GGG | - | chr3.3:47829583-47829602 | MS.gene95386:intron | 45.0% | |
| TGGTTGCATTGGAAAGGAAC+TGG | - | chr3.3:47829321-47829340 | MS.gene95386:CDS | 45.0% | |
| ! | AGGCAATTCAGGTTCTGGTA+AGG | + | chr3.3:47830104-47830123 | None:intergenic | 45.0% |
| ! | GAGGTACCTGATATAAAGCC+TGG | - | chr3.3:47830309-47830328 | MS.gene95386:intron | 45.0% |
| ! | GGGCATTCATTTTATCCCTC+AGG | + | chr3.3:47831210-47831229 | None:intergenic | 45.0% |
| ! | GTATCCTCTAGAGATGAGTC+TGG | - | chr3.3:47829965-47829984 | MS.gene95386:CDS | 45.0% |
| ACTCAACAAAACTCCGGCCA+AGG | + | chr3.3:47830644-47830663 | None:intergenic | 50.0% | |
| AGACAAAGAAGCAGTGGAGG+AGG | - | chr3.3:47830272-47830291 | MS.gene95386:intron | 50.0% | |
| CTCTTGCTTCGTCTACGCAT+CGG | - | chr3.3:47829379-47829398 | MS.gene95386:intron | 50.0% | |
| CTGCTTGTAACTCTGCACCT+TGG | - | chr3.3:47830624-47830643 | MS.gene95386:intron | 50.0% | |
| GAAACACGCCTCTTGTTCTC+CGG | + | chr3.3:47830468-47830487 | None:intergenic | 50.0% | |
| GAGCCAAACTCTACTACCTG+AGG | - | chr3.3:47831191-47831210 | MS.gene95386:CDS | 50.0% | |
| GCCTAATAACCGGGTTTCAC+TGG | + | chr3.3:47829660-47829679 | None:intergenic | 50.0% | |
| GGAGGTGAAAGAACAGAGAG+AGG | - | chr3.3:47830290-47830309 | MS.gene95386:intron | 50.0% | |
| GGGTCTGGTATTGCGGATAT+TGG | - | chr3.3:47829551-47829570 | MS.gene95386:intron | 50.0% | |
| GTCCACACAAACCAGAACTG+TGG | + | chr3.3:47829501-47829520 | None:intergenic | 50.0% | |
| TTCAGGTGCTAAGCAGAGCT+GGG | - | chr3.3:47829531-47829550 | MS.gene95386:intron | 50.0% | |
| TTGTAACTCTGCACCTTGGC+CGG | - | chr3.3:47830628-47830647 | MS.gene95386:intron | 50.0% | |
| TTGTCCCTCATTTCCGAAGC+AGG | - | chr3.3:47830032-47830051 | MS.gene95386:CDS | 50.0% | |
| ! | AGGCTGTGTCCTTTTGGTCT+GGG | - | chr3.3:47829751-47829770 | MS.gene95386:intron | 50.0% |
| ! | CTTAGCAGGCTGTGTCCTTT+TGG | - | chr3.3:47829745-47829764 | MS.gene95386:intron | 50.0% |
| ! | GGGGGTTTGGCATTTTTCGT+TGG | - | chr3.3:47829771-47829790 | MS.gene95386:intron | 50.0% |
| !! | AGGAAGTACCGGAGAACAAG+AGG | - | chr3.3:47830457-47830476 | MS.gene95386:CDS | 50.0% |
| !! | CAGTTCTGGTTTGTGTGGAC+AGG | - | chr3.3:47829501-47829520 | MS.gene95386:intron | 50.0% |
| !! | GTCCACAGTTCTGGTTTGTG+TGG | - | chr3.3:47829496-47829515 | MS.gene95386:intron | 50.0% |
| AACCGCGAGGCACATTATGC+AGG | - | chr3.3:47830153-47830172 | MS.gene95386:intron | 55.0% | |
| AGAAGGATGGTAGCTGGGGT+TGG | - | chr3.3:47830549-47830568 | MS.gene95386:CDS | 55.0% | |
| CAGAGCTGGGTCTGGTATTG+CGG | - | chr3.3:47829544-47829563 | MS.gene95386:intron | 55.0% | |
| CGATGCGTAGACGAAGCAAG+AGG | + | chr3.3:47829381-47829400 | None:intergenic | 55.0% | |
| CTTCAGGTGCTAAGCAGAGC+TGG | - | chr3.3:47829530-47829549 | MS.gene95386:intron | 55.0% | |
| GAAGGATGGTAGCTGGGGTT+GGG | - | chr3.3:47830550-47830569 | MS.gene95386:CDS | 55.0% | |
| GCGTAGACGAAGCAAGAGGA+TGG | + | chr3.3:47829377-47829396 | None:intergenic | 55.0% | |
| GGAATTAGTGTCAGTGGGGC+AGG | - | chr3.3:47829587-47829606 | MS.gene95386:intron | 55.0% | |
| TGCCAAACCCCCAGACCAAA+AGG | + | chr3.3:47829763-47829782 | None:intergenic | 55.0% | |
| TGCCTGCATAATGTGCCTCG+CGG | + | chr3.3:47830158-47830177 | None:intergenic | 55.0% | |
| TGTGGACAGGTCAGGACTTC+AGG | - | chr3.3:47829514-47829533 | MS.gene95386:intron | 55.0% | |
| TTGATGCGGGGAGGCAATTC+AGG | + | chr3.3:47830115-47830134 | None:intergenic | 55.0% | |
| TTGCTTCGTCTACGCATCGG+TGG | - | chr3.3:47829382-47829401 | MS.gene95386:intron | 55.0% | |
| TTGTCAGGCGTCCACAGTTC+TGG | - | chr3.3:47829487-47829506 | MS.gene95386:intron | 55.0% | |
| ! | CAGGCTGTGTCCTTTTGGTC+TGG | - | chr3.3:47829750-47829769 | MS.gene95386:intron | 55.0% |
| ! | CTGGTTTGTGTGGACAGGTC+AGG | - | chr3.3:47829506-47829525 | MS.gene95386:intron | 55.0% |
| ! | GCTGTGTCCTTTTGGTCTGG+GGG | - | chr3.3:47829753-47829772 | MS.gene95386:intron | 55.0% |
| ! | GGCTGTGTCCTTTTGGTCTG+GGG | - | chr3.3:47829752-47829771 | MS.gene95386:intron | 55.0% |
| ! | GTCCTTTTGGTCTGGGGGTT+TGG | - | chr3.3:47829758-47829777 | MS.gene95386:intron | 55.0% |
| GTGCTAAGCAGAGCTGGGTC+TGG | - | chr3.3:47829536-47829555 | MS.gene95386:intron | 60.0% | |
| ! | CGGGGAGGCAATTCAGGTTC+TGG | + | chr3.3:47830109-47830128 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 47829288 | 47831237 | 47829288 | ID=MS.gene95386 |
| chr3.3 | mRNA | 47829288 | 47831237 | 47829288 | ID=MS.gene95386.t1;Parent=MS.gene95386 |
| chr3.3 | exon | 47831080 | 47831237 | 47831080 | ID=MS.gene95386.t1.exon1;Parent=MS.gene95386.t1 |
| chr3.3 | CDS | 47831080 | 47831237 | 47831080 | ID=cds.MS.gene95386.t1;Parent=MS.gene95386.t1 |
| chr3.3 | exon | 47830930 | 47831002 | 47830930 | ID=MS.gene95386.t1.exon2;Parent=MS.gene95386.t1 |
| chr3.3 | CDS | 47830930 | 47831002 | 47830930 | ID=cds.MS.gene95386.t1;Parent=MS.gene95386.t1 |
| chr3.3 | exon | 47830351 | 47830584 | 47830351 | ID=MS.gene95386.t1.exon3;Parent=MS.gene95386.t1 |
| chr3.3 | CDS | 47830351 | 47830584 | 47830351 | ID=cds.MS.gene95386.t1;Parent=MS.gene95386.t1 |
| chr3.3 | exon | 47830172 | 47830258 | 47830172 | ID=MS.gene95386.t1.exon4;Parent=MS.gene95386.t1 |
| chr3.3 | CDS | 47830172 | 47830258 | 47830172 | ID=cds.MS.gene95386.t1;Parent=MS.gene95386.t1 |
| chr3.3 | exon | 47829933 | 47830066 | 47829933 | ID=MS.gene95386.t1.exon5;Parent=MS.gene95386.t1 |
| chr3.3 | CDS | 47829933 | 47830066 | 47829933 | ID=cds.MS.gene95386.t1;Parent=MS.gene95386.t1 |
| chr3.3 | exon | 47829288 | 47829387 | 47829288 | ID=MS.gene95386.t1.exon6;Parent=MS.gene95386.t1 |
| chr3.3 | CDS | 47829288 | 47829387 | 47829288 | ID=cds.MS.gene95386.t1;Parent=MS.gene95386.t1 |
| Gene Sequence |
| Protein sequence |
