Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94930.t1 | XP_013460014.1 | 96.3 | 219 | 8 | 0 | 1 | 219 | 1 | 219 | 6.80E-107 | 396.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94930.t1 | P82413 | 56.1 | 132 | 54 | 1 | 87 | 218 | 102 | 229 | 2.8e-32 | 140.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94930.t1 | A0A072V7A1 | 96.3 | 219 | 8 | 0 | 1 | 219 | 1 | 219 | 4.9e-107 | 396.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052666 | MS.gene94930 | 0.829815 | 4.17E-55 | -1.69E-46 |
| MS.gene057321 | MS.gene94930 | 0.861545 | 9.51E-64 | -1.69E-46 |
| MS.gene060483 | MS.gene94930 | 0.862731 | 4.12E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene94930 | MS.gene04216 | PPI |
| MS.gene94930 | MS.gene95386 | PPI |
| MS.gene94930 | MS.gene04266 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94930.t1 | MTR_3g058620 | 96.347 | 219 | 8 | 0 | 1 | 219 | 1 | 219 | 2.03e-153 | 424 |
| MS.gene94930.t1 | MTR_5g013300 | 37.681 | 207 | 105 | 3 | 10 | 215 | 39 | 222 | 2.86e-41 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94930.t1 | AT5G11750 | 75.839 | 149 | 33 | 2 | 73 | 219 | 80 | 227 | 1.58e-76 | 230 |
| MS.gene94930.t1 | AT4G11630 | 75.342 | 146 | 33 | 1 | 74 | 219 | 81 | 223 | 8.11e-76 | 228 |
| MS.gene94930.t1 | AT5G11750 | 65.318 | 173 | 33 | 3 | 73 | 219 | 80 | 251 | 7.04e-71 | 216 |
| MS.gene94930.t1 | AT1G24240 | 73.510 | 151 | 37 | 1 | 69 | 219 | 73 | 220 | 4.27e-67 | 206 |
| MS.gene94930.t1 | AT4G17560 | 49.296 | 142 | 65 | 1 | 74 | 215 | 84 | 218 | 2.56e-38 | 132 |
| MS.gene94930.t1 | AT5G47190 | 60.000 | 105 | 42 | 0 | 111 | 215 | 118 | 222 | 1.52e-37 | 130 |
| MS.gene94930.t1 | AT1G24240 | 64.865 | 74 | 23 | 1 | 69 | 142 | 73 | 143 | 1.29e-24 | 95.5 |
Find 59 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCGTGTTTCTATTATAAA+AGG | 0.194759 | 3.1:-44216024 | MS.gene94930:CDS |
| TTGATGCGGGGAGGCAATTC+AGG | 0.268789 | 3.1:+44216389 | None:intergenic |
| ATCCCTCAGGTAGTAGAGTT+TGG | 0.318153 | 3.1:+44215307 | None:intergenic |
| ACCTTTATCTCCTTTATGTT+AGG | 0.356884 | 3.1:+44215356 | None:intergenic |
| ACCTAACATAAAGGAGATAA+AGG | 0.358575 | 3.1:-44215357 | MS.gene94930:CDS |
| CGGGGAGGCAATTCAGGTTC+TGG | 0.369112 | 3.1:+44216395 | None:intergenic |
| ACACTACATTCAGACTTAGA+AGG | 0.398714 | 3.1:-44215969 | MS.gene94930:CDS |
| GAAGGATGGTAGCTGGGGTT+GGG | 0.398853 | 3.1:-44215951 | MS.gene94930:CDS |
| TTGTCCCTCATTTCCGAAGC+AGG | 0.430695 | 3.1:-44216469 | MS.gene94930:CDS |
| GAAAGAGATTTGGCGGAGAT+AGG | 0.431305 | 3.1:+44218941 | None:intergenic |
| ATATAACCAGGCTTTATATC+AGG | 0.433635 | 3.1:+44216186 | None:intergenic |
| AGAAGGATGGTAGCTGGGGT+TGG | 0.434672 | 3.1:-44215952 | MS.gene94930:CDS |
| ATGCTGAAATGAAGGCAATC+TGG | 0.441606 | 3.1:+44216502 | None:intergenic |
| CGGTAGACATAAACCTGCTT+CGG | 0.445201 | 3.1:+44216456 | None:intergenic |
| TAATCTCTTAAATTTGATGC+GGG | 0.446449 | 3.1:+44216376 | None:intergenic |
| GACTTAGAAGGATGGTAGCT+GGG | 0.461287 | 3.1:-44215957 | MS.gene94930:CDS |
| GGCGTGTTTCTATTATAAAA+GGG | 0.465947 | 3.1:-44216023 | MS.gene94930:CDS |
| TTACCGTGGAGAAAGAGATT+TGG | 0.468649 | 3.1:+44218931 | None:intergenic |
| ACGAATCAGCCATGGCTTCA+CGG | 0.473904 | 3.1:-44219028 | None:intergenic |
| AGACTTAGAAGGATGGTAGC+TGG | 0.494744 | 3.1:-44215958 | MS.gene94930:CDS |
| AGACAAAGAAGCAGTGGAGG+AGG | 0.496174 | 3.1:-44216229 | MS.gene94930:CDS |
| CCGTGGAGAAAGAGATTTGG+CGG | 0.496540 | 3.1:+44218934 | None:intergenic |
| ATCTCTCACTCGCTCTTCAT+CGG | 0.497958 | 3.1:-44218979 | MS.gene94930:CDS |
| ATAAACCTGCTTCGGAAATG+AGG | 0.502963 | 3.1:+44216464 | None:intergenic |
| TAAAAGGGATTGTTATTGCA+AGG | 0.505129 | 3.1:-44216008 | MS.gene94930:CDS |
| GTATCCTCTAGAGATGAGTC+TGG | 0.510292 | 3.1:-44216536 | MS.gene94930:CDS |
| AACCGCGAGGCACATTATGC+AGG | 0.510916 | 3.1:-44216348 | MS.gene94930:intron |
| ACAGAACCATGCTGAAATGA+AGG | 0.517294 | 3.1:+44216494 | None:intergenic |
| CAGGTATTCACCTAACATAA+AGG | 0.524817 | 3.1:-44215366 | MS.gene94930:CDS |
| TCTAGAGATGAGTCTGGTAA+TGG | 0.532054 | 3.1:-44216530 | MS.gene94930:CDS |
| CTAATCTCTTAAATTTGATG+CGG | 0.540456 | 3.1:+44216375 | None:intergenic |
| TCATATATCATAGGAAGTAC+CGG | 0.546725 | 3.1:-44216055 | MS.gene94930:intron |
| GAGGTACCTGATATAAAGCC+TGG | 0.550742 | 3.1:-44216192 | MS.gene94930:CDS |
| GAAACACGCCTCTTGTTCTC+CGG | 0.554578 | 3.1:+44216036 | None:intergenic |
| AGGCAATTCAGGTTCTGGTA+AGG | 0.561434 | 3.1:+44216400 | None:intergenic |
| TTTAGACAAAGAAGCAGTGG+AGG | 0.569964 | 3.1:-44216232 | MS.gene94930:CDS |
| GTTATTGCAAGGCGTAATTG+TGG | 0.573207 | 3.1:-44215997 | MS.gene94930:CDS |
| GAGATTTGGCGGAGATAGGT+CGG | 0.575095 | 3.1:+44218945 | None:intergenic |
| GAAGAGTCTCCGTGAAGCCA+TGG | 0.578236 | 3.1:+44219019 | None:intergenic |
| TAAACCTGCTTCGGAAATGA+GGG | 0.601675 | 3.1:+44216465 | None:intergenic |
| CTCTTAAATTTGATGCGGGG+AGG | 0.603126 | 3.1:+44216380 | None:intergenic |
| AGGAAGTACCGGAGAACAAG+AGG | 0.604082 | 3.1:-44216044 | MS.gene94930:CDS |
| GGAGGTGAAAGAACAGAGAG+AGG | 0.615909 | 3.1:-44216211 | MS.gene94930:CDS |
| CCGCCAAATCTCTTTCTCCA+CGG | 0.624603 | 3.1:-44218934 | MS.gene94930:intron |
| TTGAGCTGCACAATATAACC+AGG | 0.624977 | 3.1:+44216174 | None:intergenic |
| AGAATCAACAGAATTTGTCT+CGG | 0.631893 | 3.1:+44216436 | None:intergenic |
| TACATTCAGACTTAGAAGGA+TGG | 0.634854 | 3.1:-44215965 | MS.gene94930:CDS |
| GAGCCAAACTCTACTACCTG+AGG | 0.635973 | 3.1:-44215310 | MS.gene94930:CDS |
| AGATTGCCTTCATTTCAGCA+TGG | 0.636188 | 3.1:-44216500 | MS.gene94930:CDS |
| AAGAGCGAGTGAGAGATGAA+CGG | 0.636322 | 3.1:+44218985 | None:intergenic |
| ACTTAGAAGGATGGTAGCTG+GGG | 0.639779 | 3.1:-44215956 | MS.gene94930:CDS |
| CTAGAGGATACATTCGTCTG+AGG | 0.640083 | 3.1:+44216548 | None:intergenic |
| AATCTCTTAAATTTGATGCG+GGG | 0.640370 | 3.1:+44216377 | None:intergenic |
| ATTACCAGACTCATCTCTAG+AGG | 0.648515 | 3.1:+44216532 | None:intergenic |
| AGCGAGTGAGAGATGAACGG+AGG | 0.664015 | 3.1:+44218988 | None:intergenic |
| AGCCAAACTCTACTACCTGA+GGG | 0.676552 | 3.1:-44215309 | MS.gene94930:CDS |
| TTATATTGTGCAGCTCAAAG+TGG | 0.710180 | 3.1:-44216169 | MS.gene94930:intron |
| TGCCTGCATAATGTGCCTCG+CGG | 0.710446 | 3.1:+44216346 | None:intergenic |
| AGAGATTAGATAAAACCGCG+AGG | 0.761190 | 3.1:-44216361 | MS.gene94930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATTAAATAAACAGAAAT+GGG | + | chr3.1:44217067-44217086 | None:intergenic | 15.0% |
| !! | TAACATTAAATAAACAGAAA+TGG | + | chr3.1:44217068-44217087 | None:intergenic | 15.0% |
| !! | TAATCATTTGTAAAAATTGT+TGG | - | chr3.1:44218026-44218045 | MS.gene94930:intron | 15.0% |
| !! | TTATTTGAATTATTGTTATG+AGG | - | chr3.1:44218667-44218686 | MS.gene94930:intron | 15.0% |
| !!! | ATTCTTTTTATTCTCTTTTT+TGG | + | chr3.1:44218611-44218630 | None:intergenic | 15.0% |
| !!! | TATTTTTAGTTTACTTTCAT+AGG | - | chr3.1:44216847-44216866 | MS.gene94930:intron | 15.0% |
| !!! | TTCTTTTTATTCTCTTTTTT+GGG | + | chr3.1:44218610-44218629 | None:intergenic | 15.0% |
| !! | AAGCACAATTAACTTTAAAT+TGG | + | chr3.1:44218870-44218889 | None:intergenic | 20.0% |
| !! | AAGCAGATATACATAAATTA+TGG | + | chr3.1:44218412-44218431 | None:intergenic | 20.0% |
| !! | ACATAATTATAAGCAAAAGT+AGG | - | chr3.1:44216531-44216550 | MS.gene94930:CDS | 20.0% |
| !! | AGATATACATAAATTATGGA+AGG | + | chr3.1:44218408-44218427 | None:intergenic | 20.0% |
| !! | ATTTCATAGCATATACAAAA+GGG | + | chr3.1:44216716-44216735 | None:intergenic | 20.0% |
| !! | TATAAACACTTATAGCATAA+AGG | - | chr3.1:44215732-44215751 | MS.gene94930:intron | 20.0% |
| !! | TCAAAGAAATTTCATGTATT+TGG | + | chr3.1:44216593-44216612 | None:intergenic | 20.0% |
| !! | TCACATAAATTAGTTACATT+AGG | - | chr3.1:44215452-44215471 | MS.gene94930:intron | 20.0% |
| !! | TTAATTGTGGGATTATTTAA+TGG | - | chr3.1:44216937-44216956 | MS.gene94930:intron | 20.0% |
| !!! | ACTTACTTTTGCTTATATTA+AGG | - | chr3.1:44216612-44216631 | MS.gene94930:intron | 20.0% |
| !!! | AGAATATGATGATGAATTTA+AGG | - | chr3.1:44218641-44218660 | MS.gene94930:intron | 20.0% |
| !!! | GAATAACATAACAAGATTTT+TGG | - | chr3.1:44215877-44215896 | MS.gene94930:intron | 20.0% |
| !!! | GTATTTTCTAAAGTAACATA+AGG | + | chr3.1:44218768-44218787 | None:intergenic | 20.0% |
| !!! | TAAAATCTTGCAATTTTTCA+TGG | - | chr3.1:44217030-44217049 | MS.gene94930:intron | 20.0% |
| !!! | TATTTTTTGACTTTTAAGGA+GGG | - | chr3.1:44218543-44218562 | MS.gene94930:intron | 20.0% |
| !!! | TCTCTATTTTTTGACTTTTA+AGG | - | chr3.1:44218539-44218558 | MS.gene94930:intron | 20.0% |
| !!! | TTTTTATGTCTTGTTTTTGT+TGG | - | chr3.1:44217616-44217635 | MS.gene94930:intron | 20.0% |
| ! | AAAAAGTTGTTTATCCAAGT+TGG | - | chr3.1:44217672-44217691 | MS.gene94930:intron | 25.0% |
| ! | AAAAGTTGTTTATCCAAGTT+GGG | - | chr3.1:44217673-44217692 | MS.gene94930:intron | 25.0% |
| ! | AAAATAGAGACATAAATCAC+AGG | + | chr3.1:44218529-44218548 | None:intergenic | 25.0% |
| ! | ACTGTTATGTCATATATCAT+AGG | - | chr3.1:44218239-44218258 | MS.gene94930:intron | 25.0% |
| ! | ATATAATTTATGCATGGTAG+TGG | - | chr3.1:44216145-44216164 | MS.gene94930:intron | 25.0% |
| ! | CTAATCTCTTAAATTTGATG+CGG | + | chr3.1:44217931-44217950 | None:intergenic | 25.0% |
| ! | GATTAAAAAACTTTGCACAT+AGG | + | chr3.1:44215687-44215706 | None:intergenic | 25.0% |
| ! | GATTTCATAGCATATACAAA+AGG | + | chr3.1:44216717-44216736 | None:intergenic | 25.0% |
| ! | GGAGTATAATTAAAGGAATT+AGG | - | chr3.1:44216031-44216050 | MS.gene94930:CDS | 25.0% |
| ! | GTAATTTATGATCATGAATG+AGG | - | chr3.1:44216065-44216084 | MS.gene94930:intron | 25.0% |
| ! | GTATCATGTTACAAATTGTA+AGG | - | chr3.1:44216101-44216120 | MS.gene94930:intron | 25.0% |
| ! | TAATAAAACAGCCTAATAAC+CGG | + | chr3.1:44217472-44217491 | None:intergenic | 25.0% |
| ! | TAATCTCTTAAATTTGATGC+GGG | + | chr3.1:44217930-44217949 | None:intergenic | 25.0% |
| ! | TATAGCTTATATGAAAGAGT+AGG | - | chr3.1:44216898-44216917 | MS.gene94930:intron | 25.0% |
| ! | TATTATTGAGGCAATTGATT+TGG | - | chr3.1:44216210-44216229 | MS.gene94930:CDS | 25.0% |
| ! | TCAAAGAAAGGTAATGTATT+TGG | - | chr3.1:44216554-44216573 | MS.gene94930:CDS | 25.0% |
| ! | TCAAATATTCAATTGCACAA+TGG | - | chr3.1:44217140-44217159 | MS.gene94930:intron | 25.0% |
| ! | TGAAAACCATTTAAACACTT+AGG | + | chr3.1:44215815-44215834 | None:intergenic | 25.0% |
| ! | TTCATGCTTGTAGAAAAATT+GGG | - | chr3.1:44215504-44215523 | MS.gene94930:intron | 25.0% |
| ! | TTGTATATGCTATGAAATCT+GGG | - | chr3.1:44216718-44216737 | MS.gene94930:intron | 25.0% |
| ! | TTGTTAAAATCGTATAGTTG+AGG | - | chr3.1:44215855-44215874 | MS.gene94930:intron | 25.0% |
| ! | TTTCATGCTTGTAGAAAAAT+TGG | - | chr3.1:44215503-44215522 | MS.gene94930:intron | 25.0% |
| ! | TTTGTATATGCTATGAAATC+TGG | - | chr3.1:44216717-44216736 | MS.gene94930:intron | 25.0% |
| !! | AACAATCTAAAGTGATTTCT+TGG | - | chr3.1:44217089-44217108 | MS.gene94930:intron | 25.0% |
| !! | ATGGTTTTCAATGATAACTA+TGG | - | chr3.1:44215825-44215844 | MS.gene94930:intron | 25.0% |
| !! | CTTCTTTGTCTAAAATCTAA+AGG | + | chr3.1:44218065-44218084 | None:intergenic | 25.0% |
| !! | GGTCTGTTTGAATAAATTTT+TGG | + | chr3.1:44218747-44218766 | None:intergenic | 25.0% |
| !! | TGGTTTTCAATGATAACTAT+GGG | - | chr3.1:44215826-44215845 | MS.gene94930:intron | 25.0% |
| !!! | AATGTATTTGGTTCAAGTTT+TGG | - | chr3.1:44216566-44216585 | MS.gene94930:intron | 25.0% |
| !!! | ATATTCATGCTATTTTGAAC+TGG | - | chr3.1:44218492-44218511 | MS.gene94930:intron | 25.0% |
| !!! | CTATTTTTTGACTTTTAAGG+AGG | - | chr3.1:44218542-44218561 | MS.gene94930:intron | 25.0% |
| AACAATCTCAGCTTAATTGT+GGG | - | chr3.1:44216925-44216944 | MS.gene94930:intron | 30.0% | |
| AATAAAACAGCCTAATAACC+GGG | + | chr3.1:44217471-44217490 | None:intergenic | 30.0% | |
| AATCTCTTAAATTTGATGCG+GGG | + | chr3.1:44217929-44217948 | None:intergenic | 30.0% | |
| AATGGATCCAAGATTAACAA+GGG | - | chr3.1:44216233-44216252 | MS.gene94930:CDS | 30.0% | |
| ACATTCTTGTTGGATTTAAG+AGG | - | chr3.1:44216288-44216307 | MS.gene94930:intron | 30.0% | |
| ACCTAACATAAAGGAGATAA+AGG | - | chr3.1:44218946-44218965 | MS.gene94930:CDS | 30.0% | |
| ACCTTTATCTCCTTTATGTT+AGG | + | chr3.1:44218950-44218969 | None:intergenic | 30.0% | |
| ACGTTTCCTAAGTGTTTAAA+TGG | - | chr3.1:44215806-44215825 | MS.gene94930:intron | 30.0% | |
| ACTATTCTGATTCCATTACA+GGG | - | chr3.1:44216333-44216352 | MS.gene94930:intron | 30.0% | |
| AGAATCAACAGAATTTGTCT+CGG | + | chr3.1:44217870-44217889 | None:intergenic | 30.0% | |
| AGTGCGATATAATTTATGCA+TGG | - | chr3.1:44216139-44216158 | MS.gene94930:intron | 30.0% | |
| ATTGTGGGATTATTTAATGG+AGG | - | chr3.1:44216940-44216959 | MS.gene94930:intron | 30.0% | |
| CTAAAGTGATTTCTTGGAAT+TGG | - | chr3.1:44217095-44217114 | MS.gene94930:intron | 30.0% | |
| CTAATTGATACTCTTATGAC+AGG | - | chr3.1:44218918-44218937 | MS.gene94930:intron | 30.0% | |
| CTTATTTCCATAAGCTCTTT+AGG | - | chr3.1:44215637-44215656 | MS.gene94930:intron | 30.0% | |
| CTTGTAGAAAAATTGGGATT+CGG | - | chr3.1:44215510-44215529 | MS.gene94930:intron | 30.0% | |
| GACTTAAATTTAGCATGCTT+GGG | - | chr3.1:44216974-44216993 | MS.gene94930:intron | 30.0% | |
| GAGATATTATGCTCATTGTA+CGG | - | chr3.1:44216455-44216474 | MS.gene94930:CDS | 30.0% | |
| GATAAGGATGGTTATTATTG+AGG | - | chr3.1:44216198-44216217 | MS.gene94930:CDS | 30.0% | |
| GATTATGACAAAAGACTACA+TGG | + | chr3.1:44216482-44216501 | None:intergenic | 30.0% | |
| TAGAGTAATGTATGCTCTTT+GGG | - | chr3.1:44216433-44216452 | MS.gene94930:CDS | 30.0% | |
| TTAGAGTAATGTATGCTCTT+TGG | - | chr3.1:44216432-44216451 | MS.gene94930:CDS | 30.0% | |
| TTGCTTATATTAAGGCCATA+GGG | - | chr3.1:44216620-44216639 | MS.gene94930:intron | 30.0% | |
| TTGTAGAAAAATTGGGATTC+GGG | - | chr3.1:44215511-44215530 | MS.gene94930:intron | 30.0% | |
| TTTGCTTATATTAAGGCCAT+AGG | - | chr3.1:44216619-44216638 | MS.gene94930:intron | 30.0% | |
| TTTGTCACAATTTCTTGTGT+AGG | - | chr3.1:44217721-44217740 | MS.gene94930:intron | 30.0% | |
| ! | AGGCGTGTTTCTATTATAAA+AGG | - | chr3.1:44218279-44218298 | MS.gene94930:intron | 30.0% |
| ! | ATATAACCAGGCTTTATATC+AGG | + | chr3.1:44218120-44218139 | None:intergenic | 30.0% |
| ! | ATGTGGTGGAGTATAATTAA+AGG | - | chr3.1:44216024-44216043 | MS.gene94930:CDS | 30.0% |
| ! | CTATTTTCATCTGAAGACAT+TGG | + | chr3.1:44216362-44216381 | None:intergenic | 30.0% |
| ! | GGCGTGTTTCTATTATAAAA+GGG | - | chr3.1:44218280-44218299 | MS.gene94930:intron | 30.0% |
| ! | GGTTTTCAATGATAACTATG+GGG | - | chr3.1:44215827-44215846 | MS.gene94930:intron | 30.0% |
| ! | GTTTTCAATGATAACTATGG+GGG | - | chr3.1:44215828-44215847 | MS.gene94930:intron | 30.0% |
| ! | TAAAAGGGATTGTTATTGCA+AGG | - | chr3.1:44218295-44218314 | MS.gene94930:intron | 30.0% |
| ! | TACTGATTATCTGATAAGGA+TGG | - | chr3.1:44216186-44216205 | MS.gene94930:CDS | 30.0% |
| ! | TCATATATCATAGGAAGTAC+CGG | - | chr3.1:44218248-44218267 | MS.gene94930:intron | 30.0% |
| ! | TGCAATTTTTCATGGTAAAG+TGG | - | chr3.1:44217038-44217057 | MS.gene94930:intron | 30.0% |
| ! | TTTTCAATGATAACTATGGG+GGG | - | chr3.1:44215829-44215848 | MS.gene94930:intron | 30.0% |
| !! | ATAAGAGTATCAATTAGCTC+AGG | + | chr3.1:44218915-44218934 | None:intergenic | 30.0% |
| !! | GTTTTATTAGCTGAGCAATT+AGG | - | chr3.1:44217483-44217502 | MS.gene94930:intron | 30.0% |
| !!! | GATTTTTGGTTTGATGAACT+TGG | - | chr3.1:44215891-44215910 | MS.gene94930:intron | 30.0% |
| !!! | GCTGTTTTTGTTAAAGAAAG+AGG | - | chr3.1:44215778-44215797 | MS.gene94930:intron | 30.0% |
| AAGCTATCCTAAAGAGCTTA+TGG | + | chr3.1:44215647-44215666 | None:intergenic | 35.0% | |
| ACACTACATTCAGACTTAGA+AGG | - | chr3.1:44218334-44218353 | MS.gene94930:intron | 35.0% | |
| AGCAAAAGTAGGTCAAAGAA+AGG | - | chr3.1:44216542-44216561 | MS.gene94930:CDS | 35.0% | |
| AGCAAACTATTTAGTCCCTA+TGG | + | chr3.1:44216638-44216657 | None:intergenic | 35.0% | |
| ATGGAAGGTAATACTTACAG+TGG | + | chr3.1:44218393-44218412 | None:intergenic | 35.0% | |
| ATTTAATGGAGGAAAAGCAG+TGG | - | chr3.1:44216951-44216970 | MS.gene94930:intron | 35.0% | |
| CAACAATCTCAGCTTAATTG+TGG | - | chr3.1:44216924-44216943 | MS.gene94930:intron | 35.0% | |
| CAATTTGTGTACGTATAAGG+TGG | - | chr3.1:44215993-44216012 | MS.gene94930:CDS | 35.0% | |
| CACCTTATACGTACACAAAT+TGG | + | chr3.1:44215995-44216014 | None:intergenic | 35.0% | |
| CACTATTCTGATTCCATTAC+AGG | - | chr3.1:44216332-44216351 | MS.gene94930:intron | 35.0% | |
| CAGGTATTCACCTAACATAA+AGG | - | chr3.1:44218937-44218956 | MS.gene94930:CDS | 35.0% | |
| CTATTCTGATTCCATTACAG+GGG | - | chr3.1:44216334-44216353 | MS.gene94930:intron | 35.0% | |
| CTTACTTCCCTTGTTAATCT+TGG | + | chr3.1:44216243-44216262 | None:intergenic | 35.0% | |
| GAATGGATCCAAGATTAACA+AGG | - | chr3.1:44216232-44216251 | MS.gene94930:CDS | 35.0% | |
| GGACTTAAATTTAGCATGCT+TGG | - | chr3.1:44216973-44216992 | MS.gene94930:intron | 35.0% | |
| TACATTCAGACTTAGAAGGA+TGG | - | chr3.1:44218338-44218357 | MS.gene94930:intron | 35.0% | |
| TATTCTGATTCCATTACAGG+GGG | - | chr3.1:44216335-44216354 | MS.gene94930:intron | 35.0% | |
| TGGAAGGTAATACTTACAGT+GGG | + | chr3.1:44218392-44218411 | None:intergenic | 35.0% | |
| TTATATTGTGCAGCTCAAAG+TGG | - | chr3.1:44218134-44218153 | MS.gene94930:intron | 35.0% | |
| TTTAATGGAGGAAAAGCAGT+GGG | - | chr3.1:44216952-44216971 | MS.gene94930:intron | 35.0% | |
| TTTACTTTCATAGGCTCTCT+AGG | - | chr3.1:44216856-44216875 | MS.gene94930:intron | 35.0% | |
| TTTCTTGGAATTGGTTGCAT+TGG | - | chr3.1:44217104-44217123 | MS.gene94930:intron | 35.0% | |
| ! | AAGGAGGGTGTAGTTAAAAT+AGG | - | chr3.1:44218558-44218577 | MS.gene94930:intron | 35.0% |
| ! | CAAGTTGGGATAATCTCTTA+GGG | - | chr3.1:44217687-44217706 | MS.gene94930:intron | 35.0% |
| ! | CATTTTTCATGCTTGTGCTT+AGG | - | chr3.1:44216685-44216704 | MS.gene94930:intron | 35.0% |
| ! | GATTTTAGACAAAGAAGCAG+TGG | - | chr3.1:44218068-44218087 | MS.gene94930:intron | 35.0% |
| !! | AAGCTCTTTAGGATAGCTTA+TGG | - | chr3.1:44215648-44215667 | MS.gene94930:intron | 35.0% |
| !! | AGGGACTAAATAGTTTGCTT+AGG | - | chr3.1:44216639-44216658 | MS.gene94930:intron | 35.0% |
| !! | GATATTGGGTTGATTATTGG+TGG | - | chr3.1:44217368-44217387 | MS.gene94930:intron | 35.0% |
| !! | GTGGTACTGATTATCTGATA+AGG | - | chr3.1:44216182-44216201 | MS.gene94930:CDS | 35.0% |
| !! | TTGAGGCAATTGATTTGGAA+TGG | - | chr3.1:44216215-44216234 | MS.gene94930:CDS | 35.0% |
| AACAAGAATGTGATCTGTGG+TGG | + | chr3.1:44216279-44216298 | None:intergenic | 40.0% | |
| AACTCGACTCAACAAAACTC+CGG | + | chr3.1:44218452-44218471 | None:intergenic | 40.0% | |
| ACAGAACCATGCTGAAATGA+AGG | + | chr3.1:44217812-44217831 | None:intergenic | 40.0% | |
| ACCACAGATCACATTCTTGT+TGG | - | chr3.1:44216278-44216297 | MS.gene94930:intron | 40.0% | |
| AGAGATTAGATAAAACCGCG+AGG | - | chr3.1:44217942-44217961 | MS.gene94930:intron | 40.0% | |
| AGATTGCCTTCATTTCAGCA+TGG | - | chr3.1:44217803-44217822 | MS.gene94930:intron | 40.0% | |
| AGTGCAACATCAGTTGATCT+AGG | + | chr3.1:44216316-44216335 | None:intergenic | 40.0% | |
| ATAAACCTGCTTCGGAAATG+AGG | + | chr3.1:44217842-44217861 | None:intergenic | 40.0% | |
| ATGCTGAAATGAAGGCAATC+TGG | + | chr3.1:44217804-44217823 | None:intergenic | 40.0% | |
| ATTACCAGACTCATCTCTAG+AGG | + | chr3.1:44217774-44217793 | None:intergenic | 40.0% | |
| ATTGGTGGAATTAGTGTCAG+TGG | - | chr3.1:44217383-44217402 | MS.gene94930:intron | 40.0% | |
| CAACACAAAACGCATTGAAC+TGG | + | chr3.1:44218840-44218859 | None:intergenic | 40.0% | |
| CAATGATAGTATGGCATGCA+TGG | - | chr3.1:44217218-44217237 | MS.gene94930:intron | 40.0% | |
| CCTAAGAGATTATCCCAACT+TGG | + | chr3.1:44217689-44217708 | None:intergenic | 40.0% | |
| CGGTGGTTTACTGAATTAGA+CGG | - | chr3.1:44217193-44217212 | MS.gene94930:intron | 40.0% | |
| CTGTTTGTGGTCTATTTGGA+AGG | - | chr3.1:44217006-44217025 | MS.gene94930:intron | 40.0% | |
| CTTCCAAATAGACCACAAAC+AGG | + | chr3.1:44217008-44217027 | None:intergenic | 40.0% | |
| GGCCAATTTGTGTACGTATA+AGG | - | chr3.1:44215990-44216009 | MS.gene94930:CDS | 40.0% | |
| GTTATTGCAAGGCGTAATTG+TGG | - | chr3.1:44218306-44218325 | MS.gene94930:intron | 40.0% | |
| TAAACCTGCTTCGGAAATGA+GGG | + | chr3.1:44217841-44217860 | None:intergenic | 40.0% | |
| TAGACGGCACAATGATAGTA+TGG | - | chr3.1:44217209-44217228 | MS.gene94930:intron | 40.0% | |
| TATCTGCATACTGTCTTAGC+AGG | - | chr3.1:44217533-44217552 | MS.gene94930:intron | 40.0% | |
| TCCAACAAGAATGTGATCTG+TGG | + | chr3.1:44216282-44216301 | None:intergenic | 40.0% | |
| TCTAGAGATGAGTCTGGTAA+TGG | - | chr3.1:44217773-44217792 | MS.gene94930:intron | 40.0% | |
| TGATCATGAATGAGGATGAG+AGG | - | chr3.1:44216073-44216092 | MS.gene94930:intron | 40.0% | |
| TGGAATTGGTTGCATTGGAA+AGG | - | chr3.1:44217109-44217128 | MS.gene94930:intron | 40.0% | |
| TTACCGTGGAGAAAGAGATT+TGG | + | chr3.1:44215375-44215394 | None:intergenic | 40.0% | |
| TTGAGCTGCACAATATAACC+AGG | + | chr3.1:44218132-44218151 | None:intergenic | 40.0% | |
| TTGCCTGTTTGTGGTCTATT+TGG | - | chr3.1:44217002-44217021 | MS.gene94930:intron | 40.0% | |
| TTGGTGGAATTAGTGTCAGT+GGG | - | chr3.1:44217384-44217403 | MS.gene94930:intron | 40.0% | |
| TTTAGACAAAGAAGCAGTGG+AGG | - | chr3.1:44218071-44218090 | MS.gene94930:intron | 40.0% | |
| ! | ATAAGGTGGAGAGGTATATG+TGG | - | chr3.1:44216007-44216026 | MS.gene94930:CDS | 40.0% |
| ! | ATCTGGGATATGAGTCTGAT+TGG | - | chr3.1:44216734-44216753 | MS.gene94930:intron | 40.0% |
| ! | CAATGTGCGTTTTGTGTACA+TGG | - | chr3.1:44218811-44218830 | MS.gene94930:intron | 40.0% |
| ! | CCAAGTTGGGATAATCTCTT+AGG | - | chr3.1:44217686-44217705 | MS.gene94930:intron | 40.0% |
| ! | TGGTTTGATGAACTTGGTGA+CGG | - | chr3.1:44215897-44215916 | MS.gene94930:intron | 40.0% |
| !! | GCGGATATTGGGTTGATTAT+TGG | - | chr3.1:44217365-44217384 | MS.gene94930:intron | 40.0% |
| !!! | CTCTGATTTTTGCTGTTGTC+AGG | - | chr3.1:44217274-44217293 | MS.gene94930:intron | 40.0% |
| AAGAGCGAGTGAGAGATGAA+CGG | + | chr3.1:44215321-44215340 | None:intergenic | 45.0% | |
| ACTTAGAAGGATGGTAGCTG+GGG | - | chr3.1:44218347-44218366 | MS.gene94930:intron | 45.0% | |
| AGACTTAGAAGGATGGTAGC+TGG | - | chr3.1:44218345-44218364 | MS.gene94930:intron | 45.0% | |
| AGCACACTGAAAACTAGTGC+AGG | - | chr3.1:44215948-44215967 | MS.gene94930:CDS | 45.0% | |
| AGCATAAAGGTGACTGTGTC+TGG | - | chr3.1:44215745-44215764 | MS.gene94930:intron | 45.0% | |
| AGCCAAACTCTACTACCTGA+GGG | - | chr3.1:44218994-44219013 | MS.gene94930:CDS | 45.0% | |
| ATCCCTCAGGTAGTAGAGTT+TGG | + | chr3.1:44218999-44219018 | None:intergenic | 45.0% | |
| ATCTCTCACTCGCTCTTCAT+CGG | - | chr3.1:44215324-44215343 | MS.gene94930:CDS | 45.0% | |
| CGGTAGACATAAACCTGCTT+CGG | + | chr3.1:44217850-44217869 | None:intergenic | 45.0% | |
| CTAGAGGATACATTCGTCTG+AGG | + | chr3.1:44217758-44217777 | None:intergenic | 45.0% | |
| CTCTTAAATTTGATGCGGGG+AGG | + | chr3.1:44217926-44217945 | None:intergenic | 45.0% | |
| CTTCATGATCCAGTGAAACC+CGG | - | chr3.1:44217450-44217469 | MS.gene94930:intron | 45.0% | |
| GAAAGAGATTTGGCGGAGAT+AGG | + | chr3.1:44215365-44215384 | None:intergenic | 45.0% | |
| GACTGACATAAGCATGTGTG+AGG | - | chr3.1:44216778-44216797 | MS.gene94930:intron | 45.0% | |
| GACTTAGAAGGATGGTAGCT+GGG | - | chr3.1:44218346-44218365 | MS.gene94930:intron | 45.0% | |
| GCACACTGAAAACTAGTGCA+GGG | - | chr3.1:44215949-44215968 | MS.gene94930:CDS | 45.0% | |
| TCCAGTGAAACCCGGTTATT+AGG | - | chr3.1:44217458-44217477 | MS.gene94930:intron | 45.0% | |
| TGGTGGAATTAGTGTCAGTG+GGG | - | chr3.1:44217385-44217404 | MS.gene94930:intron | 45.0% | |
| TGGTTGCATTGGAAAGGAAC+TGG | - | chr3.1:44217115-44217134 | MS.gene94930:intron | 45.0% | |
| TGTGTACGTATAAGGTGGAG+AGG | - | chr3.1:44215998-44216017 | MS.gene94930:CDS | 45.0% | |
| ! | AGGCAATTCAGGTTCTGGTA+AGG | + | chr3.1:44217906-44217925 | None:intergenic | 45.0% |
| ! | GAGGTACCTGATATAAAGCC+TGG | - | chr3.1:44218111-44218130 | MS.gene94930:intron | 45.0% |
| ! | GGGCATTCATTTTATCCCTC+AGG | + | chr3.1:44219012-44219031 | None:intergenic | 45.0% |
| ! | GGTTTGATGAACTTGGTGAC+GGG | - | chr3.1:44215898-44215917 | MS.gene94930:intron | 45.0% |
| ! | GTATCCTCTAGAGATGAGTC+TGG | - | chr3.1:44217767-44217786 | MS.gene94930:intron | 45.0% |
| !! | TGAAGTGAAAGTGCTTACCG+TGG | + | chr3.1:44215389-44215408 | None:intergenic | 45.0% |
| ACTCAACAAAACTCCGGCCA+AGG | + | chr3.1:44218446-44218465 | None:intergenic | 50.0% | |
| AGACAAAGAAGCAGTGGAGG+AGG | - | chr3.1:44218074-44218093 | MS.gene94930:intron | 50.0% | |
| AGACATTGGACCCCCTGTAA+TGG | + | chr3.1:44216348-44216367 | None:intergenic | 50.0% | |
| AGTGGTACTTGAGTGCAGAG+TGG | - | chr3.1:44216163-44216182 | MS.gene94930:intron | 50.0% | |
| CACTGAAAACTAGTGCAGGG+AGG | - | chr3.1:44215952-44215971 | MS.gene94930:CDS | 50.0% | |
| CCGCCAAATCTCTTTCTCCA+CGG | - | chr3.1:44215369-44215388 | MS.gene94930:intron | 50.0% | |
| CCGTGGAGAAAGAGATTTGG+CGG | + | chr3.1:44215372-44215391 | None:intergenic | 50.0% | |
| CTCTTGCTTCGTCTACGCAT+CGG | - | chr3.1:44217173-44217192 | MS.gene94930:intron | 50.0% | |
| CTGCTTGTAACTCTGCACCT+TGG | - | chr3.1:44218426-44218445 | MS.gene94930:intron | 50.0% | |
| GAAACACGCCTCTTGTTCTC+CGG | + | chr3.1:44218270-44218289 | None:intergenic | 50.0% | |
| GAGATTTGGCGGAGATAGGT+CGG | + | chr3.1:44215361-44215380 | None:intergenic | 50.0% | |
| GAGCCAAACTCTACTACCTG+AGG | - | chr3.1:44218993-44219012 | MS.gene94930:CDS | 50.0% | |
| GCCTAATAACCGGGTTTCAC+TGG | + | chr3.1:44217462-44217481 | None:intergenic | 50.0% | |
| GGAGGTGAAAGAACAGAGAG+AGG | - | chr3.1:44218092-44218111 | MS.gene94930:intron | 50.0% | |
| GTCCACACAAACCAGAACTG+TGG | + | chr3.1:44217303-44217322 | None:intergenic | 50.0% | |
| TTCAGGTGCTAAGCAGAGCT+GGG | - | chr3.1:44217333-44217352 | MS.gene94930:intron | 50.0% | |
| TTGTAACTCTGCACCTTGGC+CGG | - | chr3.1:44218430-44218449 | MS.gene94930:intron | 50.0% | |
| TTGTCCCTCATTTCCGAAGC+AGG | - | chr3.1:44217834-44217853 | MS.gene94930:intron | 50.0% | |
| ! | AGGCTGTGTCCTTTTGGTCT+GGG | - | chr3.1:44217553-44217572 | MS.gene94930:intron | 50.0% |
| ! | AGGTGGAGAGGTATATGTGG+TGG | - | chr3.1:44216010-44216029 | MS.gene94930:CDS | 50.0% |
| ! | AGTGCAGGGAGGTGTATGTT+TGG | - | chr3.1:44215963-44215982 | MS.gene94930:CDS | 50.0% |
| ! | CTTAGCAGGCTGTGTCCTTT+TGG | - | chr3.1:44217547-44217566 | MS.gene94930:intron | 50.0% |
| ! | GGGAGGTGTATGTTTGGCAT+TGG | - | chr3.1:44215969-44215988 | MS.gene94930:CDS | 50.0% |
| ! | GGGGGTTTGGCATTTTTCGT+TGG | - | chr3.1:44217573-44217592 | MS.gene94930:intron | 50.0% |
| ! | TGGGTTTGCTTGCCTGTTTG+TGG | - | chr3.1:44216993-44217012 | MS.gene94930:intron | 50.0% |
| !! | AGGAAGTACCGGAGAACAAG+AGG | - | chr3.1:44218259-44218278 | MS.gene94930:intron | 50.0% |
| !! | CAGTTCTGGTTTGTGTGGAC+AGG | - | chr3.1:44217303-44217322 | MS.gene94930:intron | 50.0% |
| !! | GGTCTGGTGTTGCGGATATT+GGG | - | chr3.1:44217354-44217373 | MS.gene94930:intron | 50.0% |
| !! | GTCCACAGTTCTGGTTTGTG+TGG | - | chr3.1:44217298-44217317 | MS.gene94930:intron | 50.0% |
| AACCGCGAGGCACATTATGC+AGG | - | chr3.1:44217955-44217974 | MS.gene94930:intron | 55.0% | |
| AGAAGGATGGTAGCTGGGGT+TGG | - | chr3.1:44218351-44218370 | MS.gene94930:intron | 55.0% | |
| AGCGAGTGAGAGATGAACGG+AGG | + | chr3.1:44215318-44215337 | None:intergenic | 55.0% | |
| CGATGCGTAGACGAAGCAAG+AGG | + | chr3.1:44217175-44217194 | None:intergenic | 55.0% | |
| CTTCAGGTGCTAAGCAGAGC+TGG | - | chr3.1:44217332-44217351 | MS.gene94930:intron | 55.0% | |
| GAAGGATGGTAGCTGGGGTT+GGG | - | chr3.1:44218352-44218371 | MS.gene94930:intron | 55.0% | |
| GCGTAGACGAAGCAAGAGGA+TGG | + | chr3.1:44217171-44217190 | None:intergenic | 55.0% | |
| GGAATTAGTGTCAGTGGGGC+AGG | - | chr3.1:44217389-44217408 | MS.gene94930:intron | 55.0% | |
| TGCCAAACCCCCAGACCAAA+AGG | + | chr3.1:44217565-44217584 | None:intergenic | 55.0% | |
| TGCCTGCATAATGTGCCTCG+CGG | + | chr3.1:44217960-44217979 | None:intergenic | 55.0% | |
| TGTGGACAGGTCTGGACTTC+AGG | - | chr3.1:44217316-44217335 | MS.gene94930:intron | 55.0% | |
| TTGATGCGGGGAGGCAATTC+AGG | + | chr3.1:44217917-44217936 | None:intergenic | 55.0% | |
| TTGCTTCGTCTACGCATCGG+TGG | - | chr3.1:44217176-44217195 | MS.gene94930:intron | 55.0% | |
| TTGTCAGGCGTCCACAGTTC+TGG | - | chr3.1:44217289-44217308 | MS.gene94930:intron | 55.0% | |
| ! | CAGGCTGTGTCCTTTTGGTC+TGG | - | chr3.1:44217552-44217571 | MS.gene94930:intron | 55.0% |
| ! | CTGGTTTGTGTGGACAGGTC+TGG | - | chr3.1:44217308-44217327 | MS.gene94930:intron | 55.0% |
| ! | GCTGTGTCCTTTTGGTCTGG+GGG | - | chr3.1:44217555-44217574 | MS.gene94930:intron | 55.0% |
| ! | GGCTGTGTCCTTTTGGTCTG+GGG | - | chr3.1:44217554-44217573 | MS.gene94930:intron | 55.0% |
| ! | GTCCTTTTGGTCTGGGGGTT+TGG | - | chr3.1:44217560-44217579 | MS.gene94930:intron | 55.0% |
| !! | GGGTCTGGTGTTGCGGATAT+TGG | - | chr3.1:44217353-44217372 | MS.gene94930:intron | 55.0% |
| !! | TGAACTTGGTGACGGGCACA+TGG | - | chr3.1:44215905-44215924 | MS.gene94930:intron | 55.0% |
| GTGCTAAGCAGAGCTGGGTC+TGG | - | chr3.1:44217338-44217357 | MS.gene94930:intron | 60.0% | |
| ! | CAGAGCTGGGTCTGGTGTTG+CGG | - | chr3.1:44217346-44217365 | MS.gene94930:intron | 60.0% |
| ! | CGGGGAGGCAATTCAGGTTC+TGG | + | chr3.1:44217911-44217930 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 44215286 | 44219039 | 44215286 | ID=MS.gene94930 |
| chr3.1 | mRNA | 44215286 | 44219039 | 44215286 | ID=MS.gene94930.t1;Parent=MS.gene94930 |
| chr3.1 | exon | 44218935 | 44219039 | 44218935 | ID=MS.gene94930.t1.exon1;Parent=MS.gene94930.t1 |
| chr3.1 | CDS | 44218935 | 44219039 | 44218935 | ID=cds.MS.gene94930.t1;Parent=MS.gene94930.t1 |
| chr3.1 | exon | 44216349 | 44216582 | 44216349 | ID=MS.gene94930.t1.exon2;Parent=MS.gene94930.t1 |
| chr3.1 | CDS | 44216349 | 44216582 | 44216349 | ID=cds.MS.gene94930.t1;Parent=MS.gene94930.t1 |
| chr3.1 | exon | 44216170 | 44216256 | 44216170 | ID=MS.gene94930.t1.exon3;Parent=MS.gene94930.t1 |
| chr3.1 | CDS | 44216170 | 44216256 | 44216170 | ID=cds.MS.gene94930.t1;Parent=MS.gene94930.t1 |
| chr3.1 | exon | 44215931 | 44216064 | 44215931 | ID=MS.gene94930.t1.exon4;Parent=MS.gene94930.t1 |
| chr3.1 | CDS | 44215931 | 44216064 | 44215931 | ID=cds.MS.gene94930.t1;Parent=MS.gene94930.t1 |
| chr3.1 | exon | 44215286 | 44215385 | 44215286 | ID=MS.gene94930.t1.exon5;Parent=MS.gene94930.t1 |
| chr3.1 | CDS | 44215286 | 44215385 | 44215286 | ID=cds.MS.gene94930.t1;Parent=MS.gene94930.t1 |
| Gene Sequence |
| Protein sequence |
