Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04366.t1 | XP_003600432.1 | 99.7 | 290 | 1 | 0 | 25 | 314 | 41 | 330 | 3.10E-161 | 577.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04366.t1 | Q680K8 | 68.7 | 291 | 88 | 3 | 25 | 314 | 41 | 329 | 9.5e-111 | 401.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04366.t1 | G7IY69 | 99.7 | 290 | 1 | 0 | 25 | 314 | 41 | 330 | 2.2e-161 | 577.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04366.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04366 | MS.gene76479 | PPI |
| MS.gene04366 | MS.gene039090 | PPI |
| MS.gene04366 | MS.gene54146 | PPI |
| MS.gene04366 | MS.gene039084 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04366.t1 | MTR_3g061090 | 95.130 | 308 | 13 | 1 | 7 | 314 | 25 | 330 | 0.0 | 594 |
| MS.gene04366.t1 | MTR_3g061090 | 99.612 | 258 | 1 | 0 | 57 | 314 | 1 | 258 | 0.0 | 528 |
| MS.gene04366.t1 | MTR_5g096700 | 63.668 | 289 | 102 | 3 | 25 | 312 | 43 | 329 | 3.99e-126 | 363 |
| MS.gene04366.t1 | MTR_5g096700 | 64.706 | 272 | 93 | 3 | 42 | 312 | 1 | 270 | 4.19e-121 | 348 |
| MS.gene04366.t1 | MTR_1g029850 | 46.926 | 309 | 158 | 3 | 7 | 312 | 23 | 328 | 4.35e-97 | 290 |
| MS.gene04366.t1 | MTR_3g088560 | 48.684 | 304 | 150 | 5 | 7 | 308 | 22 | 321 | 2.93e-95 | 285 |
| MS.gene04366.t1 | MTR_3g088560 | 51.046 | 239 | 115 | 2 | 72 | 308 | 13 | 251 | 9.75e-81 | 245 |
| MS.gene04366.t1 | MTR_3g088560 | 51.695 | 236 | 112 | 2 | 75 | 308 | 31 | 266 | 4.06e-80 | 244 |
| MS.gene04366.t1 | MTR_5g096790 | 48.929 | 280 | 123 | 6 | 34 | 308 | 58 | 322 | 1.26e-74 | 232 |
| MS.gene04366.t1 | MTR_3g088560 | 53.030 | 198 | 91 | 2 | 113 | 308 | 2 | 199 | 1.55e-65 | 205 |
| MS.gene04366.t1 | MTR_3g072160 | 30.108 | 186 | 122 | 4 | 118 | 295 | 66 | 251 | 1.26e-11 | 64.3 |
| MS.gene04366.t1 | MTR_7g094490 | 27.815 | 151 | 94 | 3 | 139 | 276 | 197 | 345 | 1.36e-11 | 65.1 |
| MS.gene04366.t1 | MTR_1g072650 | 28.289 | 152 | 94 | 3 | 139 | 277 | 201 | 350 | 1.47e-11 | 65.1 |
| MS.gene04366.t1 | MTR_3g072160 | 32.143 | 168 | 106 | 4 | 118 | 277 | 29 | 196 | 1.75e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04366.t1 | AT1G55760 | 67.101 | 307 | 95 | 5 | 9 | 314 | 28 | 329 | 1.63e-146 | 415 |
| MS.gene04366.t1 | AT1G21780 | 48.039 | 306 | 155 | 3 | 7 | 312 | 23 | 324 | 2.41e-100 | 298 |
| MS.gene04366.t1 | AT1G21780 | 48.039 | 306 | 155 | 3 | 7 | 312 | 23 | 324 | 2.41e-100 | 298 |
| MS.gene04366.t1 | AT1G01640 | 30.366 | 191 | 128 | 4 | 126 | 313 | 1 | 189 | 7.10e-16 | 75.5 |
| MS.gene04366.t1 | AT1G01640 | 30.588 | 170 | 113 | 4 | 147 | 313 | 1 | 168 | 2.04e-13 | 68.2 |
| MS.gene04366.t1 | AT3G03740 | 34.177 | 158 | 87 | 4 | 133 | 274 | 199 | 355 | 1.60e-12 | 68.2 |
| MS.gene04366.t1 | AT3G56230 | 30.247 | 162 | 109 | 3 | 136 | 293 | 98 | 259 | 2.07e-12 | 67.0 |
| MS.gene04366.t1 | AT2G40450 | 32.540 | 126 | 74 | 4 | 130 | 244 | 4 | 129 | 9.45e-12 | 63.9 |
| MS.gene04366.t1 | AT2G39760 | 27.703 | 148 | 96 | 1 | 139 | 275 | 184 | 331 | 6.10e-11 | 63.2 |
| MS.gene04366.t1 | AT2G39760 | 27.517 | 149 | 97 | 1 | 139 | 276 | 184 | 332 | 7.17e-11 | 62.8 |
| MS.gene04366.t1 | AT2G39760 | 27.517 | 149 | 97 | 1 | 139 | 276 | 184 | 332 | 7.17e-11 | 62.8 |
Find 62 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTGAGGTTCCACTTTC+TGG | 0.064092 | 3.4:+56861523 | MS.gene04366:CDS |
| CTTGTAACATTGGATATTTC+AGG | 0.153912 | 3.4:-56861031 | None:intergenic |
| ATCCAGTATCTTGTTAAATT+TGG | 0.170654 | 3.4:+56862814 | MS.gene04366:CDS |
| TGGTAAAATATTTGAAATTC+AGG | 0.193894 | 3.4:+56862834 | MS.gene04366:CDS |
| CGACATGTCTGTGATGTTTA+TGG | 0.202175 | 3.4:-56862566 | None:intergenic |
| ATCTCATCGCTGAAGTCTTT+GGG | 0.249673 | 3.4:+56862893 | MS.gene04366:CDS |
| GATCTCATCGCTGAAGTCTT+TGG | 0.302318 | 3.4:+56862892 | MS.gene04366:CDS |
| GAAGTCTTTGGGGAAGTTCT+TGG | 0.305595 | 3.4:+56862904 | MS.gene04366:CDS |
| TTCCTTGATTTGAAGATTGC+AGG | 0.320978 | 3.4:+56861568 | MS.gene04366:CDS |
| TGAGATCCCTGTCCGCGTTT+TGG | 0.322271 | 3.4:-56862876 | None:intergenic |
| TACCAAATTTAACAAGATAC+TGG | 0.332501 | 3.4:-56862816 | None:intergenic |
| TTCAAAATGCATCACTATAT+CGG | 0.365062 | 3.4:+56862767 | MS.gene04366:CDS |
| GATCGTGTGAAAACATGCTT+TGG | 0.410502 | 3.4:-56862522 | None:intergenic |
| AAATCCTTCACCACCCCATA+TGG | 0.411517 | 3.4:-56862356 | None:intergenic |
| GTGGAGAACCTTGCTCCATA+TGG | 0.412309 | 3.4:+56862341 | MS.gene04366:CDS |
| TATTCCTCCAAAACGCGGAC+AGG | 0.453494 | 3.4:+56862869 | MS.gene04366:CDS |
| AGGATTATCTCTTGTAACAT+TGG | 0.466890 | 3.4:-56861041 | None:intergenic |
| GCAAAAGCCCTAGGGTCTCT+TGG | 0.469328 | 3.4:+56862397 | MS.gene04366:CDS |
| TGGAGAACCTTGCTCCATAT+GGG | 0.474713 | 3.4:+56862342 | MS.gene04366:CDS |
| CGAAAAGCTCTCACACATCC+AGG | 0.477842 | 3.4:+56861112 | MS.gene04366:CDS |
| TTGGGGAAGTTCTTGGTGCA+TGG | 0.482135 | 3.4:+56862911 | MS.gene04366:CDS |
| CATGTCGATTGAAGTATGTC+AGG | 0.482314 | 3.4:+56862582 | MS.gene04366:CDS |
| AAAACTCTCCCGCCTTTCCC+AGG | 0.488012 | 3.4:-56860379 | None:intergenic |
| GCTTTGGAAGACAGGTGAAC+GGG | 0.489275 | 3.4:-56862506 | None:intergenic |
| TGCTCCATATGGGGTGGTGA+AGG | 0.497886 | 3.4:+56862352 | MS.gene04366:CDS |
| GGCCTGCAATCTTCAAATCA+AGG | 0.500364 | 3.4:-56861570 | None:intergenic |
| AATGCTTCGGATGGAAGTAT+AGG | 0.510954 | 3.4:+56862460 | MS.gene04366:CDS |
| GTCAACAACCTGGGAAAGGC+GGG | 0.514959 | 3.4:+56860371 | MS.gene04366:CDS |
| AGACATCACAATCAATGCTT+CGG | 0.520138 | 3.4:+56862447 | MS.gene04366:CDS |
| AGATCAAACGCAAAAGCCCT+AGG | 0.526407 | 3.4:+56862388 | MS.gene04366:CDS |
| GCATTCTACCAAGAGACCCT+AGG | 0.531172 | 3.4:-56862405 | None:intergenic |
| GAAAACATGCTTTGGAAGAC+AGG | 0.538730 | 3.4:-56862514 | None:intergenic |
| CGCATGATAAAAGAAGCAAT+TGG | 0.545571 | 3.4:-56861064 | None:intergenic |
| CGTGTCGTTAGTTCTGCTCA+TGG | 0.548473 | 3.4:+56861085 | MS.gene04366:CDS |
| ATGAAGAATTTCTGACACAT+AGG | 0.551928 | 3.4:+56862638 | MS.gene04366:CDS |
| ATGATAAAAGAAGCAATTGG+AGG | 0.567311 | 3.4:-56861061 | None:intergenic |
| ATCACAATCAATGCTTCGGA+TGG | 0.568005 | 3.4:+56862451 | MS.gene04366:CDS |
| ATGAAGAGAAACGAGGATTG+TGG | 0.569942 | 3.4:+56860340 | MS.gene04366:CDS |
| AAGAGTCAACAACCTGGGAA+AGG | 0.574060 | 3.4:+56860367 | MS.gene04366:CDS |
| GAAGTTCTTGGTGCATGGAA+AGG | 0.576264 | 3.4:+56862916 | MS.gene04366:CDS |
| CATTCTACCAAGAGACCCTA+GGG | 0.576970 | 3.4:-56862404 | None:intergenic |
| GGAGAACCTTGCTCCATATG+GGG | 0.579524 | 3.4:+56862343 | MS.gene04366:CDS |
| TATCTTCTAGAAGACTCTCA+TGG | 0.579860 | 3.4:-56862717 | None:intergenic |
| ATTCCTCCAAAACGCGGACA+GGG | 0.581021 | 3.4:+56862870 | MS.gene04366:CDS |
| TTCTAGAAGACTCTCATGGA+TGG | 0.591651 | 3.4:-56862713 | None:intergenic |
| AGTCAACAACCTGGGAAAGG+CGG | 0.601403 | 3.4:+56860370 | MS.gene04366:CDS |
| TCTCATCGCTGAAGTCTTTG+GGG | 0.603546 | 3.4:+56862894 | MS.gene04366:CDS |
| GGGTGGTGAAGGATTTACTC+AGG | 0.609959 | 3.4:+56862363 | MS.gene04366:CDS |
| TGTGAAATGAAGGTATTTGT+CGG | 0.609961 | 3.4:+56860973 | MS.gene04366:intron |
| GGAAGAAAGAGTCAACAACC+TGG | 0.613447 | 3.4:+56860361 | MS.gene04366:CDS |
| CTTGGTAGAATGCTAAGAGA+AGG | 0.615271 | 3.4:+56862415 | MS.gene04366:CDS |
| TGCTTTGGAAGACAGGTGAA+CGG | 0.624572 | 3.4:-56862507 | None:intergenic |
| GATCAAACGCAAAAGCCCTA+GGG | 0.637827 | 3.4:+56862389 | MS.gene04366:CDS |
| TCACCACCCCATATGGAGCA+AGG | 0.646739 | 3.4:-56862349 | None:intergenic |
| CAATTTATTCCTCCAAAACG+CGG | 0.648608 | 3.4:+56862864 | MS.gene04366:CDS |
| GAAGAAAGAGTCAACAACCT+GGG | 0.649051 | 3.4:+56860362 | MS.gene04366:CDS |
| CGACATATCTGACTTGAGAG+AGG | 0.668882 | 3.4:+56862690 | MS.gene04366:CDS |
| GAAATGAAGGTATTTGTCGG+TGG | 0.696589 | 3.4:+56860976 | MS.gene04366:intron |
| GCTAGCGCTTCTGCATGCAG+CGG | 0.709404 | 3.4:+56862660 | MS.gene04366:CDS |
| TTTGTCGGTGGAGAAACACA+AGG | 0.725214 | 3.4:+56860988 | MS.gene04366:CDS |
| GAACCTTGCTCCATATGGGG+TGG | 0.727934 | 3.4:+56862346 | MS.gene04366:CDS |
| GATTCATATGAAGAGAAACG+AGG | 0.748404 | 3.4:+56860333 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTCGATACATTATTAT+AGG | + | chr3.4:56862318-56862337 | MS.gene04366:intron | 15.0% |
| !!! | ATATATATCATTTTTAATGC+AGG | + | chr3.4:56860661-56860680 | MS.gene04366:intron | 15.0% |
| !!! | ATTTTCGATACATTATTATA+GGG | + | chr3.4:56862319-56862338 | MS.gene04366:intron | 15.0% |
| !!! | GTTTTGTATATTATAAAGTT+TGG | + | chr3.4:56860873-56860892 | MS.gene04366:intron | 15.0% |
| !!! | TAATTATTATTGATTTTCTG+TGG | + | chr3.4:56861620-56861639 | MS.gene04366:intron | 15.0% |
| !! | AAATGCTCATGATTATAAAA+GGG | - | chr3.4:56861738-56861757 | None:intergenic | 20.0% |
| !! | TAAATGCTCATGATTATAAA+AGG | - | chr3.4:56861739-56861758 | None:intergenic | 20.0% |
| !!! | AATGGATTATATAATCAAAC+AGG | + | chr3.4:56861810-56861829 | MS.gene04366:intron | 20.0% |
| !!! | ATGGATTATATAATCAAACA+GGG | + | chr3.4:56861811-56861830 | MS.gene04366:intron | 20.0% |
| !!! | ATTATAGCATTGATAATTGT+TGG | - | chr3.4:56862132-56862151 | None:intergenic | 20.0% |
| !!! | ATTGTTGATAAAGTTTGTTT+GGG | + | chr3.4:56861945-56861964 | MS.gene04366:intron | 20.0% |
| !!! | GTTTAGCTAAAATCAATTTT+GGG | + | chr3.4:56861690-56861709 | MS.gene04366:intron | 20.0% |
| !!! | TGGTAAAATATTTGAAATTC+AGG | + | chr3.4:56862834-56862853 | MS.gene04366:CDS | 20.0% |
| !!! | TGTTATTTCAATTTTTCTTG+TGG | + | chr3.4:56861163-56861182 | MS.gene04366:intron | 20.0% |
| !!! | TTTAGCTAAAATCAATTTTG+GGG | + | chr3.4:56861691-56861710 | MS.gene04366:intron | 20.0% |
| ! | AATGCTCATGATTATAAAAG+GGG | - | chr3.4:56861737-56861756 | None:intergenic | 25.0% |
| ! | ATCAGAATGATTAGTGATAA+TGG | + | chr3.4:56861792-56861811 | MS.gene04366:intron | 25.0% |
| ! | ATCCAGTATCTTGTTAAATT+TGG | + | chr3.4:56862814-56862833 | MS.gene04366:CDS | 25.0% |
| ! | GAAAATTAGCATTTCAAACA+AGG | - | chr3.4:56862305-56862324 | None:intergenic | 25.0% |
| ! | GAAATTAATCAACAGAAGAA+TGG | - | chr3.4:56861440-56861459 | None:intergenic | 25.0% |
| ! | TAATCATTCTGATTCATCAT+TGG | - | chr3.4:56861785-56861804 | None:intergenic | 25.0% |
| ! | TACCAAATTTAACAAGATAC+TGG | - | chr3.4:56862819-56862838 | None:intergenic | 25.0% |
| ! | TGCAAATGTTAATCATTTAG+AGG | + | chr3.4:56861650-56861669 | MS.gene04366:intron | 25.0% |
| ! | TGGATTATATAATCAAACAG+GGG | + | chr3.4:56861812-56861831 | MS.gene04366:intron | 25.0% |
| ! | TTAATCATTTAGAGGCAATT+GGG | + | chr3.4:56861658-56861677 | MS.gene04366:intron | 25.0% |
| ! | TTCAAAATGCATCACTATAT+CGG | + | chr3.4:56862767-56862786 | MS.gene04366:CDS | 25.0% |
| !! | AAACACGTGCTAAAAAATTT+TGG | + | chr3.4:56860779-56860798 | MS.gene04366:intron | 25.0% |
| !! | AACACGTGCTAAAAAATTTT+GGG | + | chr3.4:56860780-56860799 | MS.gene04366:intron | 25.0% |
| !! | AGACAATTCAGATTTTAAAC+TGG | + | chr3.4:56862046-56862065 | MS.gene04366:intron | 25.0% |
| !! | ATTTTTAATGTCCTAATGCA+TGG | + | chr3.4:56861293-56861312 | MS.gene04366:intron | 25.0% |
| !! | CATTGTTGATAAAGTTTGTT+TGG | + | chr3.4:56861944-56861963 | MS.gene04366:intron | 25.0% |
| !! | CTTTTCTCAATTATCTTTAC+GGG | + | chr3.4:56862605-56862624 | MS.gene04366:CDS | 25.0% |
| !! | GCTTTTCTCAATTATCTTTA+CGG | + | chr3.4:56862604-56862623 | MS.gene04366:CDS | 25.0% |
| !! | GGTTTAGCTAAAATCAATTT+TGG | + | chr3.4:56861689-56861708 | MS.gene04366:intron | 25.0% |
| !!! | AAATCAGAATTTTGATTACC+TGG | - | chr3.4:56861133-56861152 | None:intergenic | 25.0% |
| !!! | ATCAATTTTGGGGTAATAAT+TGG | + | chr3.4:56861701-56861720 | MS.gene04366:intron | 25.0% |
| !!! | GGATTTTGATTTTTTGTAGT+CGG | + | chr3.4:56861980-56861999 | MS.gene04366:intron | 25.0% |
| !!! | TAAAAAATTTTGGGTTGTGT+TGG | + | chr3.4:56860789-56860808 | MS.gene04366:intron | 25.0% |
| AAATCTGATCCTTTCAAGAT+TGG | + | chr3.4:56860548-56860567 | MS.gene04366:intron | 30.0% | |
| AGAGAATCAGTCATTCTATT+TGG | - | chr3.4:56860458-56860477 | None:intergenic | 30.0% | |
| AGATTTAACTAGTTAACCCT+TGG | - | chr3.4:56861889-56861908 | None:intergenic | 30.0% | |
| AGGATTATCTCTTGTAACAT+TGG | - | chr3.4:56861044-56861063 | None:intergenic | 30.0% | |
| AGTCTTAAGCATATACATCT+GGG | - | chr3.4:56861594-56861613 | None:intergenic | 30.0% | |
| ATAATGATTCCCTCAAATCT+TGG | - | chr3.4:56862215-56862234 | None:intergenic | 30.0% | |
| ATACGAAAAATGTACTTGAG+AGG | + | chr3.4:56862743-56862762 | MS.gene04366:CDS | 30.0% | |
| ATCAGTCATTCTATTTGGAA+AGG | - | chr3.4:56860453-56860472 | None:intergenic | 30.0% | |
| ATGAAGAATTTCTGACACAT+AGG | + | chr3.4:56862638-56862657 | MS.gene04366:CDS | 30.0% | |
| ATGATAAAAGAAGCAATTGG+AGG | - | chr3.4:56861064-56861083 | None:intergenic | 30.0% | |
| ATTATATAATCAAACAGGGG+AGG | + | chr3.4:56861815-56861834 | MS.gene04366:intron | 30.0% | |
| CAAAATCCAGTTCATTTCTA+CGG | + | chr3.4:56862186-56862205 | MS.gene04366:intron | 30.0% | |
| CTTGTAACATTGGATATTTC+AGG | - | chr3.4:56861034-56861053 | None:intergenic | 30.0% | |
| GTTAATCATTTAGAGGCAAT+TGG | + | chr3.4:56861657-56861676 | MS.gene04366:intron | 30.0% | |
| TCAAATCCAATTCCTCATAA+GGG | - | chr3.4:56860911-56860930 | None:intergenic | 30.0% | |
| TCAAATCTATTTAGCCATGT+GGG | - | chr3.4:56860839-56860858 | None:intergenic | 30.0% | |
| TGTATTTGTGTGTGAAATGA+AGG | + | chr3.4:56860963-56860982 | MS.gene04366:intron | 30.0% | |
| TTCAAATCTATTTAGCCATG+TGG | - | chr3.4:56860840-56860859 | None:intergenic | 30.0% | |
| TTCGATACATTATTATAGGG+TGG | + | chr3.4:56862322-56862341 | MS.gene04366:intron | 30.0% | |
| ! | AGAGCAATGAAGATTTTGTT+TGG | + | chr3.4:56861500-56861519 | MS.gene04366:CDS | 30.0% |
| ! | ATGATGAATTTTCCAGAAAG+TGG | - | chr3.4:56861538-56861557 | None:intergenic | 30.0% |
| ! | GAGTTTAATTTCCATGCATT+AGG | - | chr3.4:56861307-56861326 | None:intergenic | 30.0% |
| ! | TAGTCTTAAGCATATACATC+TGG | - | chr3.4:56861595-56861614 | None:intergenic | 30.0% |
| ! | TCATTGGTGATTATGAACAA+AGG | - | chr3.4:56861769-56861788 | None:intergenic | 30.0% |
| !! | AGATTTTGTTTGGTCAATTG+AGG | + | chr3.4:56861510-56861529 | MS.gene04366:CDS | 30.0% |
| !! | GTTTTTGTTGGAAGGTATAT+TGG | + | chr3.4:56860397-56860416 | MS.gene04366:intron | 30.0% |
| !! | TGTGAAATGAAGGTATTTGT+CGG | + | chr3.4:56860973-56860992 | MS.gene04366:intron | 30.0% |
| !!! | TAGTACTTGTTTTGTGATCA+CGG | + | chr3.4:56860697-56860716 | MS.gene04366:intron | 30.0% |
| AAAGTGCAACTGTGATTTCA+TGG | - | chr3.4:56860430-56860449 | None:intergenic | 35.0% | |
| AGACATCACAATCAATGCTT+CGG | + | chr3.4:56862447-56862466 | MS.gene04366:CDS | 35.0% | |
| AGCACGTGTTTAAATTACAG+TGG | - | chr3.4:56860770-56860789 | None:intergenic | 35.0% | |
| ATCCTTTCAAGATTGGTATC+TGG | + | chr3.4:56860555-56860574 | MS.gene04366:intron | 35.0% | |
| CAATTTATTCCTCCAAAACG+CGG | + | chr3.4:56862864-56862883 | MS.gene04366:CDS | 35.0% | |
| CGCATGATAAAAGAAGCAAT+TGG | - | chr3.4:56861067-56861086 | None:intergenic | 35.0% | |
| CTCAAATCCAATTCCTCATA+AGG | - | chr3.4:56860912-56860931 | None:intergenic | 35.0% | |
| GTGATCACAAAACAAGTACT+AGG | - | chr3.4:56860698-56860717 | None:intergenic | 35.0% | |
| TCAAATTAGAGTCATCACTG+TGG | - | chr3.4:56861916-56861935 | None:intergenic | 35.0% | |
| TCAATGGAGAATCGATAACT+TGG | + | chr3.4:56860508-56860527 | MS.gene04366:intron | 35.0% | |
| TCTTGTGGATAGAGAACTAT+TGG | + | chr3.4:56861178-56861197 | MS.gene04366:intron | 35.0% | |
| TTCCAGATACCAATCTTGAA+AGG | - | chr3.4:56860560-56860579 | None:intergenic | 35.0% | |
| ! | AAATCAGCATGTTTTCTGCA+CGG | + | chr3.4:56862094-56862113 | MS.gene04366:intron | 35.0% |
| ! | CGTAGAAATGAACTGGATTT+TGG | - | chr3.4:56862188-56862207 | None:intergenic | 35.0% |
| ! | TATCTTCTAGAAGACTCTCA+TGG | - | chr3.4:56862720-56862739 | None:intergenic | 35.0% |
| ! | TCAAGATTGGTATCTGGAAT+TGG | + | chr3.4:56860561-56860580 | MS.gene04366:intron | 35.0% |
| ! | TTCCTTGATTTGAAGATTGC+AGG | + | chr3.4:56861568-56861587 | MS.gene04366:CDS | 35.0% |
| !!! | TTTTTTGCAAGACCCTTATG+AGG | + | chr3.4:56860896-56860915 | MS.gene04366:intron | 35.0% |
| AAAAATTGAGACAGCCCACA+TGG | + | chr3.4:56860822-56860841 | MS.gene04366:intron | 40.0% | |
| AAAATTGACCCTCAAGCCAA+GGG | + | chr3.4:56861870-56861889 | MS.gene04366:intron | 40.0% | |
| ATCACAATCAATGCTTCGGA+TGG | + | chr3.4:56862451-56862470 | MS.gene04366:CDS | 40.0% | |
| ATCTCATCGCTGAAGTCTTT+GGG | + | chr3.4:56862893-56862912 | MS.gene04366:CDS | 40.0% | |
| ATGAAGAGAAACGAGGATTG+TGG | + | chr3.4:56860340-56860359 | MS.gene04366:CDS | 40.0% | |
| CGACATGTCTGTGATGTTTA+TGG | - | chr3.4:56862569-56862588 | None:intergenic | 40.0% | |
| CTTGGTAGAATGCTAAGAGA+AGG | + | chr3.4:56862415-56862434 | MS.gene04366:CDS | 40.0% | |
| GAAGAAAGAGTCAACAACCT+GGG | + | chr3.4:56860362-56860381 | MS.gene04366:CDS | 40.0% | |
| GATCGTGTGAAAACATGCTT+TGG | - | chr3.4:56862525-56862544 | None:intergenic | 40.0% | |
| TAAAATTGACCCTCAAGCCA+AGG | + | chr3.4:56861869-56861888 | MS.gene04366:intron | 40.0% | |
| TCAATTGAGGTTCCACTTTC+TGG | + | chr3.4:56861523-56861542 | MS.gene04366:CDS | 40.0% | |
| ! | AATGCTTCGGATGGAAGTAT+AGG | + | chr3.4:56862460-56862479 | MS.gene04366:CDS | 40.0% |
| ! | CAGTGGATTTGTCAGAATCA+CGG | - | chr3.4:56860753-56860772 | None:intergenic | 40.0% |
| ! | CATGTCGATTGAAGTATGTC+AGG | + | chr3.4:56862582-56862601 | MS.gene04366:CDS | 40.0% |
| ! | TTCTAGAAGACTCTCATGGA+TGG | - | chr3.4:56862716-56862735 | None:intergenic | 40.0% |
| !! | GAAAACATGCTTTGGAAGAC+AGG | - | chr3.4:56862517-56862536 | None:intergenic | 40.0% |
| !! | GAAATGAAGGTATTTGTCGG+TGG | + | chr3.4:56860976-56860995 | MS.gene04366:intron | 40.0% |
| AAATCCTTCACCACCCCATA+TGG | - | chr3.4:56862359-56862378 | None:intergenic | 45.0% | |
| AAGAGTCAACAACCTGGGAA+AGG | + | chr3.4:56860367-56860386 | MS.gene04366:CDS | 45.0% | |
| AGAGGCAATTGGGAATGTGT+CGG | + | chr3.4:56861668-56861687 | MS.gene04366:intron | 45.0% | |
| AGATCAAACGCAAAAGCCCT+AGG | + | chr3.4:56862388-56862407 | MS.gene04366:CDS | 45.0% | |
| AGTCGGAATCCTGTGTATTC+AGG | + | chr3.4:56861997-56862016 | MS.gene04366:intron | 45.0% | |
| ATTCTCCATTGAGCAAGACG+AGG | - | chr3.4:56860500-56860519 | None:intergenic | 45.0% | |
| CATTCTACCAAGAGACCCTA+GGG | - | chr3.4:56862407-56862426 | None:intergenic | 45.0% | |
| CTACGGTGACCAAGATTTGA+GGG | + | chr3.4:56862203-56862222 | MS.gene04366:intron | 45.0% | |
| GATCAAACGCAAAAGCCCTA+GGG | + | chr3.4:56862389-56862408 | MS.gene04366:CDS | 45.0% | |
| GATCTCATCGCTGAAGTCTT+TGG | + | chr3.4:56862892-56862911 | MS.gene04366:CDS | 45.0% | |
| GATCTTGATCCAACATCCAC+TGG | - | chr3.4:56862026-56862045 | None:intergenic | 45.0% | |
| GCAAGACCCTTATGAGGAAT+TGG | + | chr3.4:56860902-56860921 | MS.gene04366:intron | 45.0% | |
| GGAAGAAAGAGTCAACAACC+TGG | + | chr3.4:56860361-56860380 | MS.gene04366:CDS | 45.0% | |
| GGCCTGCAATCTTCAAATCA+AGG | - | chr3.4:56861573-56861592 | None:intergenic | 45.0% | |
| TCTACGGTGACCAAGATTTG+AGG | + | chr3.4:56862202-56862221 | MS.gene04366:intron | 45.0% | |
| TCTCATCGCTGAAGTCTTTG+GGG | + | chr3.4:56862894-56862913 | MS.gene04366:CDS | 45.0% | |
| TGGAGAACCTTGCTCCATAT+GGG | + | chr3.4:56862342-56862361 | MS.gene04366:CDS | 45.0% | |
| TGGTCACCGTAGAAATGAAC+TGG | - | chr3.4:56862195-56862214 | None:intergenic | 45.0% | |
| TTGTTTGGGCAGCAGTTCAT+TGG | + | chr3.4:56861959-56861978 | MS.gene04366:intron | 45.0% | |
| TTTGTCGGTGGAGAAACACA+AGG | + | chr3.4:56860988-56861007 | MS.gene04366:CDS | 45.0% | |
| ! | AAAGGCGGGAGAGTTTTTGT+TGG | + | chr3.4:56860385-56860404 | MS.gene04366:CDS | 45.0% |
| ! | ACTAGTTAACCCTTGGCTTG+AGG | - | chr3.4:56861882-56861901 | None:intergenic | 45.0% |
| ! | CGACATATCTGACTTGAGAG+AGG | + | chr3.4:56862690-56862709 | MS.gene04366:CDS | 45.0% |
| ! | CTAGTTAACCCTTGGCTTGA+GGG | - | chr3.4:56861881-56861900 | None:intergenic | 45.0% |
| ! | GAAGTCTTTGGGGAAGTTCT+TGG | + | chr3.4:56862904-56862923 | MS.gene04366:CDS | 45.0% |
| ! | GAAGTTCTTGGTGCATGGAA+AGG | + | chr3.4:56862916-56862935 | MS.gene04366:CDS | 45.0% |
| !! | TGCTTTGGAAGACAGGTGAA+CGG | - | chr3.4:56862510-56862529 | None:intergenic | 45.0% |
| AGTCAACAACCTGGGAAAGG+CGG | + | chr3.4:56860370-56860389 | MS.gene04366:CDS | 50.0% | |
| ATTCCTCCAAAACGCGGACA+GGG | + | chr3.4:56862870-56862889 | MS.gene04366:CDS | 50.0% | |
| CAACTCCTCGTCTTGCTCAA+TGG | + | chr3.4:56860492-56860511 | MS.gene04366:intron | 50.0% | |
| CACTGGTGTCCTGAATACAC+AGG | - | chr3.4:56862009-56862028 | None:intergenic | 50.0% | |
| CGAAAAGCTCTCACACATCC+AGG | + | chr3.4:56861112-56861131 | MS.gene04366:CDS | 50.0% | |
| CTGTGTATTCAGGACACCAG+TGG | + | chr3.4:56862007-56862026 | MS.gene04366:intron | 50.0% | |
| GCATTCTACCAAGAGACCCT+AGG | - | chr3.4:56862408-56862427 | None:intergenic | 50.0% | |
| GGAGAACCTTGCTCCATATG+GGG | + | chr3.4:56862343-56862362 | MS.gene04366:CDS | 50.0% | |
| GGGTGGTGAAGGATTTACTC+AGG | + | chr3.4:56862363-56862382 | MS.gene04366:CDS | 50.0% | |
| GTGGAGAACCTTGCTCCATA+TGG | + | chr3.4:56862341-56862360 | MS.gene04366:CDS | 50.0% | |
| TATTCCTCCAAAACGCGGAC+AGG | + | chr3.4:56862869-56862888 | MS.gene04366:CDS | 50.0% | |
| TTCAGGACACCAGTGGATGT+TGG | + | chr3.4:56862014-56862033 | MS.gene04366:intron | 50.0% | |
| ! | GCGGGAGAGTTTTTGTTGGA+AGG | + | chr3.4:56860389-56860408 | MS.gene04366:CDS | 50.0% |
| ! | TTGGGGAAGTTCTTGGTGCA+TGG | + | chr3.4:56862911-56862930 | MS.gene04366:CDS | 50.0% |
| !! | CGTGTCGTTAGTTCTGCTCA+TGG | + | chr3.4:56861085-56861104 | MS.gene04366:CDS | 50.0% |
| !! | GCTTTGGAAGACAGGTGAAC+GGG | - | chr3.4:56862509-56862528 | None:intergenic | 50.0% |
| AAAACTCTCCCGCCTTTCCC+AGG | - | chr3.4:56860382-56860401 | None:intergenic | 55.0% | |
| GAACCTTGCTCCATATGGGG+TGG | + | chr3.4:56862346-56862365 | MS.gene04366:CDS | 55.0% | |
| GCAAAAGCCCTAGGGTCTCT+TGG | + | chr3.4:56862397-56862416 | MS.gene04366:CDS | 55.0% | |
| GTCAACAACCTGGGAAAGGC+GGG | + | chr3.4:56860371-56860390 | MS.gene04366:CDS | 55.0% | |
| TCACCACCCCATATGGAGCA+AGG | - | chr3.4:56862352-56862371 | None:intergenic | 55.0% | |
| TGCTCCATATGGGGTGGTGA+AGG | + | chr3.4:56862352-56862371 | MS.gene04366:CDS | 55.0% | |
| ! | TGAGATCCCTGTCCGCGTTT+TGG | - | chr3.4:56862879-56862898 | None:intergenic | 55.0% |
| GCTAGCGCTTCTGCATGCAG+CGG | + | chr3.4:56862660-56862679 | MS.gene04366:CDS | 60.0% | |
| ! | GATCCCTGTCCGCGTTTTGG+AGG | - | chr3.4:56862876-56862895 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 56860340 | 56862945 | 56860340 | ID=MS.gene04366 |
| chr3.4 | mRNA | 56860340 | 56862945 | 56860340 | ID=MS.gene04366.t1;Parent=MS.gene04366 |
| chr3.4 | exon | 56860340 | 56860410 | 56860340 | ID=MS.gene04366.t1.exon1;Parent=MS.gene04366.t1 |
| chr3.4 | CDS | 56860340 | 56860410 | 56860340 | ID=cds.MS.gene04366.t1;Parent=MS.gene04366.t1 |
| chr3.4 | exon | 56860985 | 56861133 | 56860985 | ID=MS.gene04366.t1.exon2;Parent=MS.gene04366.t1 |
| chr3.4 | CDS | 56860985 | 56861133 | 56860985 | ID=cds.MS.gene04366.t1;Parent=MS.gene04366.t1 |
| chr3.4 | exon | 56861479 | 56861597 | 56861479 | ID=MS.gene04366.t1.exon3;Parent=MS.gene04366.t1 |
| chr3.4 | CDS | 56861479 | 56861597 | 56861479 | ID=cds.MS.gene04366.t1;Parent=MS.gene04366.t1 |
| chr3.4 | exon | 56862340 | 56862945 | 56862340 | ID=MS.gene04366.t1.exon4;Parent=MS.gene04366.t1 |
| chr3.4 | CDS | 56862340 | 56862945 | 56862340 | ID=cds.MS.gene04366.t1;Parent=MS.gene04366.t1 |
| Gene Sequence |
| Protein sequence |
