Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045344.t1 | XP_003601700.2 | 96 | 719 | 25 | 2 | 1 | 719 | 1 | 715 | 0.00E+00 | 1379.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045344.t1 | Q9LK39 | 69.5 | 682 | 203 | 3 | 42 | 719 | 42 | 722 | 8.4e-288 | 990.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045344.t1 | G7JAT4 | 96.0 | 719 | 25 | 2 | 1 | 719 | 1 | 715 | 0.0e+00 | 1379.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045344.t1 | MTR_3g084470 | 95.967 | 719 | 25 | 2 | 1 | 719 | 1 | 715 | 0.0 | 1428 |
MS.gene045344.t1 | MTR_3g084450 | 82.920 | 726 | 111 | 5 | 1 | 719 | 1 | 720 | 0.0 | 1241 |
MS.gene045344.t1 | MTR_8g083170 | 75.886 | 734 | 152 | 7 | 1 | 719 | 1 | 724 | 0.0 | 1118 |
MS.gene045344.t1 | MTR_3g084450 | 83.401 | 494 | 81 | 1 | 227 | 719 | 19 | 512 | 0.0 | 863 |
MS.gene045344.t1 | MTR_1g104810 | 26.899 | 632 | 378 | 16 | 108 | 718 | 49 | 617 | 4.80e-51 | 188 |
MS.gene045344.t1 | MTR_1g104810 | 26.899 | 632 | 378 | 16 | 108 | 718 | 116 | 684 | 1.49e-50 | 188 |
MS.gene045344.t1 | MTR_7g109830 | 26.687 | 667 | 401 | 18 | 82 | 719 | 46 | 653 | 4.62e-49 | 183 |
MS.gene045344.t1 | MTR_1g086600 | 27.273 | 682 | 417 | 18 | 64 | 719 | 49 | 677 | 5.44e-49 | 183 |
MS.gene045344.t1 | MTR_1g034360 | 26.958 | 664 | 402 | 19 | 82 | 719 | 48 | 654 | 7.39e-49 | 182 |
MS.gene045344.t1 | MTR_4g068670 | 25.669 | 635 | 389 | 19 | 108 | 719 | 78 | 652 | 2.42e-44 | 169 |
MS.gene045344.t1 | MTR_5g009350 | 27.027 | 666 | 400 | 24 | 82 | 719 | 48 | 655 | 7.98e-44 | 168 |
MS.gene045344.t1 | MTR_1g030290 | 25.736 | 645 | 387 | 19 | 108 | 718 | 108 | 694 | 5.23e-42 | 163 |
MS.gene045344.t1 | MTR_5g009360 | 25.787 | 667 | 407 | 21 | 82 | 719 | 48 | 655 | 1.23e-41 | 162 |
MS.gene045344.t1 | MTR_5g009350 | 26.900 | 658 | 395 | 24 | 82 | 711 | 48 | 647 | 2.46e-41 | 160 |
MS.gene045344.t1 | MTR_8g099420 | 25.373 | 670 | 406 | 21 | 82 | 719 | 49 | 656 | 1.72e-40 | 158 |
MS.gene045344.t1 | MTR_3g082660 | 25.697 | 646 | 387 | 24 | 109 | 718 | 138 | 726 | 2.69e-40 | 158 |
MS.gene045344.t1 | MTR_3g087980 | 24.341 | 645 | 396 | 18 | 108 | 718 | 106 | 692 | 1.64e-37 | 149 |
MS.gene045344.t1 | MTR_5g009350 | 25.654 | 573 | 345 | 20 | 82 | 631 | 48 | 562 | 1.77e-34 | 139 |
MS.gene045344.t1 | MTR_5g009360 | 26.953 | 512 | 300 | 17 | 227 | 719 | 73 | 529 | 2.95e-34 | 138 |
MS.gene045344.t1 | MTR_5g009350 | 26.374 | 546 | 321 | 20 | 82 | 604 | 48 | 535 | 4.33e-34 | 138 |
MS.gene045344.t1 | MTR_1g026310 | 25.612 | 531 | 284 | 16 | 109 | 629 | 69 | 498 | 4.70e-24 | 107 |
MS.gene045344.t1 | MTR_5g007640 | 22.261 | 575 | 314 | 13 | 107 | 667 | 96 | 551 | 6.08e-21 | 97.8 |
MS.gene045344.t1 | MTR_8g039720 | 24.170 | 542 | 280 | 18 | 109 | 627 | 66 | 499 | 2.49e-19 | 92.8 |
MS.gene045344.t1 | MTR_2g105570 | 29.213 | 267 | 141 | 9 | 454 | 709 | 315 | 544 | 9.13e-19 | 90.9 |
MS.gene045344.t1 | MTR_2g095510 | 30.457 | 197 | 112 | 4 | 473 | 667 | 330 | 503 | 2.56e-18 | 89.4 |
MS.gene045344.t1 | MTR_2g095510 | 26.724 | 232 | 137 | 8 | 93 | 319 | 42 | 245 | 5.37e-11 | 66.2 |
MS.gene045344.t1 | MTR_4g057730 | 29.388 | 245 | 137 | 7 | 472 | 714 | 332 | 542 | 4.50e-17 | 85.5 |
MS.gene045344.t1 | MTR_4g057730 | 35.333 | 150 | 84 | 4 | 472 | 619 | 332 | 470 | 7.00e-17 | 84.3 |
MS.gene045344.t1 | MTR_4g057730 | 24.576 | 236 | 152 | 7 | 86 | 318 | 35 | 247 | 7.56e-11 | 65.5 |
MS.gene045344.t1 | MTR_2g095510 | 40.860 | 93 | 53 | 1 | 473 | 563 | 330 | 422 | 3.40e-16 | 82.4 |
MS.gene045344.t1 | MTR_2g095510 | 26.724 | 232 | 137 | 8 | 93 | 319 | 42 | 245 | 4.08e-11 | 66.2 |
MS.gene045344.t1 | MTR_3g460770 | 33.168 | 202 | 113 | 8 | 471 | 663 | 329 | 517 | 7.60e-16 | 81.6 |
MS.gene045344.t1 | MTR_3g088870 | 36.943 | 157 | 82 | 5 | 454 | 605 | 328 | 472 | 1.15e-15 | 81.3 |
MS.gene045344.t1 | MTR_4g057730 | 41.489 | 94 | 53 | 1 | 472 | 563 | 332 | 425 | 1.59e-15 | 80.1 |
MS.gene045344.t1 | MTR_4g057730 | 24.576 | 236 | 152 | 7 | 86 | 318 | 35 | 247 | 4.93e-11 | 65.9 |
MS.gene045344.t1 | MTR_5g027500 | 35.616 | 146 | 78 | 5 | 463 | 604 | 348 | 481 | 1.72e-15 | 80.5 |
MS.gene045344.t1 | MTR_3g088880 | 35.000 | 160 | 79 | 5 | 455 | 605 | 327 | 470 | 3.60e-15 | 79.7 |
MS.gene045344.t1 | MTR_5g027480 | 29.907 | 214 | 133 | 5 | 421 | 631 | 296 | 495 | 8.80e-15 | 78.2 |
MS.gene045344.t1 | MTR_4g077900 | 28.571 | 238 | 132 | 6 | 472 | 706 | 268 | 470 | 1.10e-14 | 77.8 |
MS.gene045344.t1 | MTR_1569s0010 | 32.000 | 175 | 98 | 6 | 454 | 620 | 303 | 464 | 5.53e-14 | 75.5 |
MS.gene045344.t1 | MTR_1g063120 | 30.488 | 164 | 99 | 3 | 472 | 631 | 340 | 492 | 9.66e-14 | 75.1 |
MS.gene045344.t1 | MTR_1g063110 | 29.891 | 184 | 110 | 4 | 456 | 631 | 316 | 488 | 2.17e-13 | 73.9 |
MS.gene045344.t1 | MTR_4g128337 | 29.293 | 198 | 113 | 4 | 474 | 667 | 338 | 512 | 6.64e-13 | 72.4 |
MS.gene045344.t1 | MTR_1g073180 | 38.060 | 134 | 65 | 6 | 476 | 605 | 351 | 470 | 1.29e-12 | 71.2 |
MS.gene045344.t1 | MTR_1g073180 | 38.060 | 134 | 65 | 6 | 476 | 605 | 329 | 448 | 1.69e-12 | 70.9 |
MS.gene045344.t1 | MTR_4g005750 | 27.407 | 270 | 156 | 7 | 454 | 716 | 308 | 544 | 4.37e-12 | 69.7 |
MS.gene045344.t1 | MTR_1g090737 | 26.877 | 253 | 134 | 6 | 472 | 714 | 355 | 566 | 7.19e-12 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045344.t1 | AT3G23790 | 69.501 | 682 | 203 | 3 | 42 | 719 | 42 | 722 | 0.0 | 1018 |
MS.gene045344.t1 | AT4G14070 | 67.042 | 710 | 216 | 5 | 16 | 718 | 28 | 726 | 0.0 | 1001 |
MS.gene045344.t1 | AT5G27600 | 28.414 | 637 | 366 | 17 | 106 | 718 | 117 | 687 | 5.81e-55 | 201 |
MS.gene045344.t1 | AT1G49430 | 29.147 | 645 | 364 | 23 | 104 | 718 | 76 | 657 | 4.17e-54 | 197 |
MS.gene045344.t1 | AT2G47240 | 26.627 | 676 | 410 | 22 | 70 | 719 | 38 | 653 | 6.15e-52 | 191 |
MS.gene045344.t1 | AT2G47240 | 26.627 | 676 | 410 | 22 | 70 | 719 | 38 | 653 | 6.15e-52 | 191 |
MS.gene045344.t1 | AT2G47240 | 26.627 | 676 | 410 | 22 | 70 | 719 | 38 | 653 | 6.15e-52 | 191 |
MS.gene045344.t1 | AT3G05970 | 27.707 | 628 | 380 | 15 | 108 | 719 | 119 | 688 | 8.43e-51 | 189 |
MS.gene045344.t1 | AT2G47240 | 26.553 | 644 | 396 | 20 | 97 | 719 | 7 | 594 | 1.91e-50 | 186 |
MS.gene045344.t1 | AT4G23850 | 25.870 | 661 | 414 | 18 | 82 | 719 | 49 | 656 | 2.54e-47 | 178 |
MS.gene045344.t1 | AT1G64400 | 25.223 | 674 | 416 | 19 | 75 | 719 | 42 | 656 | 1.08e-45 | 174 |
MS.gene045344.t1 | AT4G11030 | 25.714 | 665 | 410 | 20 | 82 | 719 | 49 | 656 | 5.92e-45 | 171 |
MS.gene045344.t1 | AT1G77590 | 26.275 | 647 | 378 | 23 | 108 | 718 | 107 | 690 | 4.71e-44 | 169 |
MS.gene045344.t1 | AT2G04350 | 26.000 | 650 | 380 | 26 | 109 | 718 | 131 | 719 | 5.74e-39 | 154 |
MS.gene045344.t1 | AT2G04350 | 26.000 | 650 | 380 | 26 | 109 | 718 | 131 | 719 | 5.74e-39 | 154 |
MS.gene045344.t1 | AT1G49430 | 29.228 | 479 | 264 | 17 | 104 | 559 | 76 | 502 | 6.38e-38 | 149 |
MS.gene045344.t1 | AT1G77590 | 27.011 | 522 | 294 | 21 | 229 | 718 | 78 | 544 | 6.93e-35 | 140 |
MS.gene045344.t1 | AT1G20510 | 25.091 | 550 | 295 | 18 | 87 | 627 | 39 | 480 | 5.31e-26 | 113 |
MS.gene045344.t1 | AT1G20510 | 25.277 | 542 | 288 | 18 | 87 | 619 | 39 | 472 | 6.69e-26 | 112 |
MS.gene045344.t1 | AT1G20510 | 25.257 | 487 | 258 | 16 | 87 | 564 | 39 | 428 | 1.14e-24 | 108 |
MS.gene045344.t1 | AT3G21230 | 31.556 | 225 | 119 | 6 | 453 | 668 | 335 | 533 | 2.77e-19 | 92.4 |
MS.gene045344.t1 | AT3G21230 | 31.818 | 220 | 115 | 6 | 453 | 663 | 335 | 528 | 1.49e-18 | 90.5 |
MS.gene045344.t1 | AT3G21240 | 26.210 | 248 | 144 | 5 | 474 | 716 | 343 | 556 | 4.30e-18 | 89.0 |
MS.gene045344.t1 | AT4G05160 | 30.348 | 201 | 115 | 4 | 472 | 670 | 334 | 511 | 5.46e-18 | 88.6 |
MS.gene045344.t1 | AT4G05160 | 27.386 | 241 | 148 | 10 | 83 | 319 | 33 | 250 | 4.62e-15 | 79.3 |
MS.gene045344.t1 | AT3G21230 | 33.898 | 177 | 94 | 5 | 453 | 620 | 335 | 497 | 9.65e-18 | 87.4 |
MS.gene045344.t1 | AT3G21240 | 32.895 | 152 | 86 | 3 | 474 | 620 | 343 | 483 | 9.25e-17 | 84.3 |
MS.gene045344.t1 | AT3G21240 | 32.895 | 152 | 86 | 3 | 474 | 620 | 343 | 483 | 9.25e-17 | 84.3 |
MS.gene045344.t1 | AT1G65060 | 30.769 | 208 | 113 | 6 | 465 | 667 | 347 | 528 | 1.55e-15 | 80.9 |
MS.gene045344.t1 | AT1G20480 | 33.333 | 171 | 99 | 5 | 453 | 619 | 334 | 493 | 2.67e-15 | 80.1 |
MS.gene045344.t1 | AT5G63380 | 40.708 | 113 | 63 | 3 | 455 | 563 | 329 | 441 | 3.04e-15 | 79.7 |
MS.gene045344.t1 | AT4G19010 | 31.720 | 186 | 108 | 5 | 472 | 650 | 352 | 525 | 9.88e-15 | 78.2 |
MS.gene045344.t1 | AT1G51680 | 29.703 | 202 | 114 | 4 | 474 | 670 | 350 | 528 | 2.23e-14 | 77.0 |
MS.gene045344.t1 | AT1G51680 | 30.151 | 199 | 111 | 4 | 474 | 667 | 350 | 525 | 6.63e-14 | 75.5 |
MS.gene045344.t1 | AT1G51680 | 41.111 | 90 | 48 | 1 | 474 | 558 | 350 | 439 | 2.20e-13 | 73.6 |
MS.gene045344.t1 | AT3G48990 | 25.984 | 254 | 147 | 11 | 460 | 710 | 294 | 509 | 3.55e-13 | 73.2 |
MS.gene045344.t1 | AT1G66120 | 33.140 | 172 | 79 | 7 | 453 | 605 | 306 | 460 | 1.89e-12 | 70.9 |
MS.gene045344.t1 | AT1G65060 | 39.048 | 105 | 56 | 2 | 465 | 564 | 347 | 448 | 3.57e-12 | 69.7 |
MS.gene045344.t1 | AT1G65890 | 30.047 | 213 | 119 | 9 | 453 | 647 | 306 | 506 | 6.64e-12 | 69.3 |
MS.gene045344.t1 | AT1G21530 | 25.455 | 220 | 124 | 8 | 431 | 627 | 275 | 477 | 7.30e-12 | 68.9 |
MS.gene045344.t1 | AT1G21530 | 26.667 | 195 | 106 | 7 | 453 | 627 | 302 | 479 | 9.10e-12 | 68.6 |
MS.gene045344.t1 | AT1G75960 | 22.598 | 562 | 309 | 20 | 87 | 627 | 23 | 479 | 1.68e-11 | 67.8 |
MS.gene045344.t1 | AT1G20500 | 27.556 | 225 | 126 | 7 | 455 | 670 | 321 | 517 | 1.97e-11 | 67.8 |
MS.gene045344.t1 | AT5G16340 | 29.534 | 193 | 102 | 7 | 453 | 627 | 303 | 479 | 2.23e-11 | 67.4 |
MS.gene045344.t1 | AT5G16370 | 27.570 | 214 | 116 | 9 | 431 | 621 | 276 | 473 | 3.00e-11 | 67.0 |
Find 179 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAGAAAGTTCATTGCTTTC+TGG | 0.138810 | 3.4:-79094865 | MS.gene045344:CDS |
GCAATCCGATTAAACATTTC+TGG | 0.141834 | 3.4:+79092885 | None:intergenic |
ACTTGTATAGATTCTCTATT+TGG | 0.203803 | 3.4:+79086743 | None:intergenic |
TCCGAGTTTCCATTTCAAAT+TGG | 0.232105 | 3.4:-79086939 | MS.gene045344:CDS |
TAACAAAGAAGAAGTCTTAA+AGG | 0.239879 | 3.4:-79087290 | MS.gene045344:CDS |
AGTAAAATCCATTCAGCTAT+TGG | 0.257091 | 3.4:-79090733 | MS.gene045344:CDS |
AGCAATGAACTTTCTAATAA+AGG | 0.267838 | 3.4:+79094871 | None:intergenic |
CTATAATGACAGATTGATAA+TGG | 0.276137 | 3.4:-79086823 | MS.gene045344:intron |
TTTAAGACTTCTTCTTTGTT+AGG | 0.291375 | 3.4:+79087292 | None:intergenic |
AGTTCTTCCACCTGGTTATA+AGG | 0.296596 | 3.4:-79088433 | MS.gene045344:CDS |
GGAAGGCGACTTCTGGTTCT+TGG | 0.307054 | 3.4:+79090846 | None:intergenic |
CTTAATCATATGCAGGCTAT+TGG | 0.309123 | 3.4:-79089258 | MS.gene045344:intron |
CTGACTGAGATCTGAACTAT+TGG | 0.311818 | 3.4:+79087240 | None:intergenic |
GCAATGAACTTTCTAATAAA+GGG | 0.318012 | 3.4:+79094872 | None:intergenic |
GTCTAATATATGATGAATTA+AGG | 0.331115 | 3.4:-79087204 | MS.gene045344:CDS |
GCGGAGCAATCAATGTTGTT+AGG | 0.340790 | 3.4:-79093809 | MS.gene045344:CDS |
ATTCACGGAAATCAGGCATT+TGG | 0.343426 | 3.4:-79092760 | MS.gene045344:CDS |
GCTGAGGGCTTGAGGGTCAT+TGG | 0.344402 | 3.4:-79094530 | MS.gene045344:CDS |
CCGAGTTTCCATTTCAAATT+GGG | 0.345381 | 3.4:-79086938 | MS.gene045344:CDS |
TTAGTTGGAGGATGCAATAT+TGG | 0.348022 | 3.4:-79094558 | MS.gene045344:intron |
GGAAAGCAGTTCCTGACATT+TGG | 0.350543 | 3.4:-79094816 | MS.gene045344:CDS |
TTCTTTGCCAGCATATGAAT+TGG | 0.351381 | 3.4:+79090766 | None:intergenic |
AGAGATAGGAAGGCGACTTC+TGG | 0.367552 | 3.4:+79090839 | None:intergenic |
TGGGTTAGCATAACACCTTT+TGG | 0.371622 | 3.4:+79092235 | None:intergenic |
GTTCTTCCACCTGGTTATAA+GGG | 0.371749 | 3.4:-79088432 | MS.gene045344:CDS |
GTGACATTGCAGAACGGATA+TGG | 0.372511 | 3.4:-79089234 | MS.gene045344:CDS |
AGAAGCATAGTTGTTGCATT+TGG | 0.377539 | 3.4:+79095356 | None:intergenic |
ATACATCAAATTGTTGTCAT+TGG | 0.380948 | 3.4:-79087456 | MS.gene045344:CDS |
TGCAAAAGCGTTTGATTTGA+AGG | 0.387889 | 3.4:-79092865 | MS.gene045344:CDS |
TTCAGCTATTGGATTCTCTA+AGG | 0.388566 | 3.4:-79090722 | MS.gene045344:intron |
GAAGTTGTAGATTCTGAAAC+TGG | 0.391248 | 3.4:-79088459 | MS.gene045344:CDS |
CGGAGCAATCAATGTTGTTA+GGG | 0.402429 | 3.4:-79093808 | MS.gene045344:CDS |
AGGATTGGCCCAATTTGAAA+TGG | 0.403335 | 3.4:+79086930 | None:intergenic |
ATTGCTGCCCACCATTCATC+TGG | 0.403430 | 3.4:-79088023 | MS.gene045344:CDS |
TTCACGGAAATCAGGCATTT+GGG | 0.404346 | 3.4:-79092759 | MS.gene045344:CDS |
GACACCATTGTGCTTTCATC+AGG | 0.404554 | 3.4:-79087951 | MS.gene045344:intron |
ACATTCATCAGGGTCAGCTT+AGG | 0.412090 | 3.4:-79091381 | MS.gene045344:CDS |
TTCTCACAGTTGTATATACT+TGG | 0.415604 | 3.4:+79091725 | None:intergenic |
GTTGAAGGAGGATCATGATA+TGG | 0.415929 | 3.4:+79094748 | None:intergenic |
TGGTGAAGTTGTGGCGAGGA+AGG | 0.415951 | 3.4:+79095301 | None:intergenic |
ATAATCCAGAAATGTTTAAT+CGG | 0.418782 | 3.4:-79092890 | MS.gene045344:CDS |
TCAAACTCTGTATGCTTAAG+TGG | 0.419902 | 3.4:+79088480 | None:intergenic |
TTGTTGCACTGACATTCATC+AGG | 0.421187 | 3.4:-79091392 | MS.gene045344:CDS |
CCTTGCTTCCTTCATTGACC+AGG | 0.421862 | 3.4:+79092799 | None:intergenic |
ACGAGTTCGAGAAACGTTGA+TGG | 0.422420 | 3.4:+79095275 | None:intergenic |
TAGTATCCCTTCATCAATTG+TGG | 0.424278 | 3.4:+79088390 | None:intergenic |
ATTATTTCCAATTCATATGC+TGG | 0.428706 | 3.4:-79090773 | MS.gene045344:CDS |
ACATTGTACCTGCTGAAGTT+GGG | 0.429154 | 3.4:-79091828 | MS.gene045344:CDS |
CAGGGTCAGCTTAGGGTACA+TGG | 0.430058 | 3.4:-79091373 | MS.gene045344:CDS |
AGAAGGTGAAAATGTTGAAC+CGG | 0.436115 | 3.4:-79087514 | MS.gene045344:intron |
TTTCTCTATTACAGATAAGA+AGG | 0.436986 | 3.4:-79094900 | MS.gene045344:intron |
GACATTGTACCTGCTGAAGT+TGG | 0.438507 | 3.4:-79091829 | MS.gene045344:CDS |
AGTCGTCGAGCAGCAATAAC+TGG | 0.440066 | 3.4:+79089195 | None:intergenic |
TAGTTACCTTGGATTGAGAT+TGG | 0.441636 | 3.4:+79095235 | None:intergenic |
TTCTAAGTATGCTGCCTCCT+TGG | 0.442134 | 3.4:-79091798 | MS.gene045344:CDS |
AGAACTTCTGCTGAGAAGTA+TGG | 0.443231 | 3.4:-79094793 | MS.gene045344:CDS |
AGGAAAAGAATAGGAGAAGA+AGG | 0.447336 | 3.4:+79095329 | None:intergenic |
ATCTCTATGCAATGTTGGAT+TGG | 0.451464 | 3.4:-79090822 | MS.gene045344:CDS |
AGGGATGGCTGGCTGAATAC+TGG | 0.452224 | 3.4:-79088059 | MS.gene045344:CDS |
AAGGAAGAGAGGAAAAGAAT+AGG | 0.455283 | 3.4:+79095320 | None:intergenic |
TCAATGTTGTTAGGGGTTCA+AGG | 0.456420 | 3.4:-79093800 | MS.gene045344:CDS |
TTCAACTATGACCTACAAAC+AGG | 0.457091 | 3.4:-79094731 | MS.gene045344:intron |
GGACTTCGCTGAGGGCTTGA+GGG | 0.457558 | 3.4:-79094537 | MS.gene045344:CDS |
TATAATGACAGATTGATAAT+GGG | 0.458531 | 3.4:-79086822 | MS.gene045344:intron |
TCTCGTAAATGACCCCTTCA+CGG | 0.460841 | 3.4:-79086907 | MS.gene045344:intron |
TACAACTGTGAGAAACTTGA+AGG | 0.461405 | 3.4:-79091716 | MS.gene045344:intron |
CCTGTCTATGACCTGATTTG+TGG | 0.462840 | 3.4:+79088079 | None:intergenic |
TGGTAATGATGGCGTGGTCT+CGG | 0.467737 | 3.4:-79094845 | MS.gene045344:CDS |
GGTGGTGTGATTGTTGTTGA+AGG | 0.468210 | 3.4:-79087984 | MS.gene045344:CDS |
TTGCTGATAATTCTTGTCGC+TGG | 0.471139 | 3.4:-79094478 | MS.gene045344:CDS |
TGGACTTCGCTGAGGGCTTG+AGG | 0.472419 | 3.4:-79094538 | MS.gene045344:CDS |
CATTCATCAGGGTCAGCTTA+GGG | 0.477338 | 3.4:-79091380 | MS.gene045344:CDS |
TCATTGCTTTCTGGTAATGA+TGG | 0.480763 | 3.4:-79094856 | MS.gene045344:CDS |
AAAAGCGCAATCTTCTCATC+GGG | 0.482730 | 3.4:+79094500 | None:intergenic |
TTGAAGGTTATCGGATCTGT+CGG | 0.484073 | 3.4:-79088507 | MS.gene045344:intron |
GTATACACAAGTGGTACTAC+TGG | 0.489782 | 3.4:-79092262 | MS.gene045344:CDS |
TAGTTTATGAATCGTTGTAC+AGG | 0.490155 | 3.4:-79091552 | MS.gene045344:intron |
ATCCAACATTGCATAGAGAT+AGG | 0.490564 | 3.4:+79090825 | None:intergenic |
CCCAATTTGAAATGGAAACT+CGG | 0.491508 | 3.4:+79086938 | None:intergenic |
GAATCCTTCAGCCACAAATC+AGG | 0.492042 | 3.4:-79088090 | MS.gene045344:CDS |
TGTTTGTAGGTCATAGTTGA+AGG | 0.492887 | 3.4:+79094733 | None:intergenic |
ATGCAATGTTGGATTGGCTA+GGG | 0.497971 | 3.4:-79090816 | MS.gene045344:CDS |
TCGAGAAACGTTGATGGAAG+TGG | 0.499348 | 3.4:+79095281 | None:intergenic |
TGAAGGTTATCGGATCTGTC+GGG | 0.501406 | 3.4:-79088506 | MS.gene045344:intron |
CCACAAATCAGGTCATAGAC+AGG | 0.501447 | 3.4:-79088079 | MS.gene045344:CDS |
TCAAATTGTTGTCATTGGCC+AGG | 0.503478 | 3.4:-79087451 | MS.gene045344:intron |
GCAGAAGTTCTCCAAATGTC+AGG | 0.504284 | 3.4:+79094805 | None:intergenic |
AGGTCATAGACAGGGATGGC+TGG | 0.504712 | 3.4:-79088070 | MS.gene045344:CDS |
TTGTGGCGAGGAAGGAAGAG+AGG | 0.511639 | 3.4:+79095309 | None:intergenic |
TTCCTATCTCTATGCAATGT+TGG | 0.513011 | 3.4:-79090827 | MS.gene045344:CDS |
ATTTGGGAAGAGAGAGCCGC+AGG | 0.516800 | 3.4:-79092743 | MS.gene045344:CDS |
CTGTTAAGTCTAACCGTGAA+GGG | 0.517070 | 3.4:+79086894 | None:intergenic |
GCAGCCTCTTCAAGTTCTCC+CGG | 0.518057 | 3.4:+79087495 | None:intergenic |
AATCTATCCCCAACTTCAGC+AGG | 0.518743 | 3.4:+79091820 | None:intergenic |
TAATTCATCATATATTAGAC+TGG | 0.519309 | 3.4:+79087207 | None:intergenic |
GCTTACCTTCTCACGTCGAT+AGG | 0.519940 | 3.4:-79089357 | MS.gene045344:CDS |
CAGGGGCCCACAATTGATGA+AGG | 0.520046 | 3.4:-79088397 | MS.gene045344:CDS |
CGCTGGCTAGTGGCAGATCA+AGG | 0.520206 | 3.4:-79094461 | MS.gene045344:intron |
GTTGTTGCATTTGGAAGTGA+AGG | 0.522885 | 3.4:+79095365 | None:intergenic |
TACGACTCCGTCCAGATGAA+TGG | 0.523272 | 3.4:+79088012 | None:intergenic |
AGCTTGTAGAAATCTGCCTC+TGG | 0.523802 | 3.4:+79091430 | None:intergenic |
TTCAAAATTCCCTTATAACC+AGG | 0.523917 | 3.4:+79088423 | None:intergenic |
GGGTCATTTACGAGAAGGAT+TGG | 0.527196 | 3.4:+79086915 | None:intergenic |
AGTATCCCTTCATCAATTGT+GGG | 0.531030 | 3.4:+79088391 | None:intergenic |
AAATCATGCCTGGTCAATGA+AGG | 0.531261 | 3.4:-79092807 | MS.gene045344:CDS |
CAGGTGACATACTAGCATCA+TGG | 0.534753 | 3.4:+79092709 | None:intergenic |
ATGACCTGATTTGTGGCTGA+AGG | 0.540920 | 3.4:+79088086 | None:intergenic |
GAGATTTGTTATTCTGCTGT+GGG | 0.541048 | 3.4:-79092835 | MS.gene045344:CDS |
TAGAGTTATGGCTCAATACA+AGG | 0.542612 | 3.4:-79086767 | MS.gene045344:CDS |
ATATAGGATAAGCGACGTCT+AGG | 0.542920 | 3.4:-79087328 | MS.gene045344:intron |
AGAAGTCTTAAAGGCAGCAA+GGG | 0.548818 | 3.4:-79087281 | MS.gene045344:CDS |
TCTCTGCAGGCTGGAATAAG+TGG | 0.549270 | 3.4:-79089388 | MS.gene045344:intron |
GTGCAACAAGCTTTCTAACA+AGG | 0.549469 | 3.4:+79091406 | None:intergenic |
GGTACTACTGGAAATCCAAA+AGG | 0.550334 | 3.4:-79092250 | MS.gene045344:CDS |
TATGCAATGTTGGATTGGCT+AGG | 0.550689 | 3.4:-79090817 | MS.gene045344:CDS |
TAGAGAATCCAATAGCTGAA+TGG | 0.551968 | 3.4:+79090725 | None:intergenic |
TCCTCTGCAGTGGGATCCAG+AGG | 0.552637 | 3.4:-79091446 | MS.gene045344:intron |
TACAACGATTCATAAACTAA+AGG | 0.552688 | 3.4:+79091556 | None:intergenic |
TGAGATTTGTTATTCTGCTG+TGG | 0.553776 | 3.4:-79092836 | MS.gene045344:CDS |
CAATAGTTCAGATCTCAGTC+AGG | 0.554943 | 3.4:-79087239 | MS.gene045344:CDS |
CATTGTACCTGCTGAAGTTG+GGG | 0.556208 | 3.4:-79091827 | MS.gene045344:CDS |
TGAATACTGGTGACATAGGT+TGG | 0.556669 | 3.4:-79088046 | MS.gene045344:CDS |
AGGTGACATACTAGCATCAT+GGG | 0.556858 | 3.4:+79092710 | None:intergenic |
AAATATACAATCACTCTGAA+AGG | 0.557239 | 3.4:-79093755 | MS.gene045344:intron |
CAGAAATCAAGTAATGCGGC+TGG | 0.566930 | 3.4:+79091581 | None:intergenic |
AAGAAGTCTTAAAGGCAGCA+AGG | 0.569628 | 3.4:-79087282 | MS.gene045344:CDS |
AACATTGCATAGAGATAGGA+AGG | 0.573319 | 3.4:+79090829 | None:intergenic |
AATTCGAAGAGATAGAGTTA+TGG | 0.573996 | 3.4:-79086779 | MS.gene045344:CDS |
GCAATATTGGACTTCGCTGA+GGG | 0.574555 | 3.4:-79094545 | MS.gene045344:CDS |
ATTTAGCGTTGCACTAGCTG+TGG | 0.582780 | 3.4:-79092913 | MS.gene045344:intron |
TAATTCTTGTCGCTGGCTAG+TGG | 0.583822 | 3.4:-79094471 | MS.gene045344:CDS |
TTGTTGCATTTGGAAGTGAA+GGG | 0.591578 | 3.4:+79095366 | None:intergenic |
GCTACTCTTGTATACACAAG+TGG | 0.593098 | 3.4:-79092271 | MS.gene045344:CDS |
TGCAATATTGGACTTCGCTG+AGG | 0.593475 | 3.4:-79094546 | MS.gene045344:CDS |
CAGGCTGGAATAAGTGGTGG+CGG | 0.593927 | 3.4:-79089382 | MS.gene045344:CDS |
TCTGTTAAGTCTAACCGTGA+AGG | 0.594002 | 3.4:+79086893 | None:intergenic |
ATGAATTGGAAATAATATTG+TGG | 0.597499 | 3.4:+79090780 | None:intergenic |
TGAAGGGGTCATTTACGAGA+AGG | 0.598723 | 3.4:+79086910 | None:intergenic |
CCTGGTCAATGAAGGAAGCA+AGG | 0.601404 | 3.4:-79092799 | MS.gene045344:CDS |
CTCTTGCCAATCTCAATCCA+AGG | 0.603249 | 3.4:-79095241 | MS.gene045344:intron |
TGGCTGAATACTGGTGACAT+AGG | 0.606118 | 3.4:-79088050 | MS.gene045344:CDS |
GCTCTTTCATATGCATGCCA+AGG | 0.609186 | 3.4:+79091781 | None:intergenic |
TCTGGACGGAGTCGTAATTG+TGG | 0.609595 | 3.4:-79088005 | MS.gene045344:CDS |
CAATGAACTTTCTAATAAAG+GGG | 0.611210 | 3.4:+79094873 | None:intergenic |
CACAAATCAGGTCATAGACA+GGG | 0.614296 | 3.4:-79088078 | MS.gene045344:CDS |
GACTCCGTCCAGATGAATGG+TGG | 0.614863 | 3.4:+79088015 | None:intergenic |
ACTGGTGAAGTTCTTCCACC+TGG | 0.616933 | 3.4:-79088441 | MS.gene045344:CDS |
GCTTTCTGGTAATGATGGCG+TGG | 0.621158 | 3.4:-79094851 | MS.gene045344:CDS |
CTGCAGGCTGGAATAAGTGG+TGG | 0.625725 | 3.4:-79089385 | MS.gene045344:intron |
TGATGGAAGTGGTGAAGTTG+TGG | 0.625848 | 3.4:+79095292 | None:intergenic |
CTGCCCACCATTCATCTGGA+CGG | 0.628090 | 3.4:-79088019 | MS.gene045344:CDS |
ATGGCGTGGTCTCGGATGAG+TGG | 0.631565 | 3.4:-79094837 | MS.gene045344:CDS |
CTTTCATATGCATGCCAAGG+AGG | 0.633043 | 3.4:+79091784 | None:intergenic |
TGCAATGTTGGATTGGCTAG+GGG | 0.633153 | 3.4:-79090815 | MS.gene045344:CDS |
ATTGATGAAGGGATACTACA+AGG | 0.633281 | 3.4:-79088385 | MS.gene045344:intron |
AGTCTAGGTATGATGGCAAG+CGG | 0.634363 | 3.4:-79093828 | MS.gene045344:intron |
TGCAACAAGCTTTCTAACAA+GGG | 0.635724 | 3.4:+79091407 | None:intergenic |
GAAGGTGAAAATGTTGAACC+GGG | 0.638729 | 3.4:-79087513 | MS.gene045344:intron |
AGGGGCCCACAATTGATGAA+GGG | 0.640460 | 3.4:-79088396 | MS.gene045344:CDS |
TGTTGCACTGACATTCATCA+GGG | 0.641553 | 3.4:-79091391 | MS.gene045344:CDS |
GGAATGTAAGCGGATTTATG+AGG | 0.642348 | 3.4:-79091352 | MS.gene045344:intron |
AACTTGAAGAGGCTGCGATG+AGG | 0.645675 | 3.4:-79087488 | MS.gene045344:CDS |
ACTCCGTCCAGATGAATGGT+GGG | 0.647112 | 3.4:+79088016 | None:intergenic |
TTGTAGGTCATAGTTGAAGG+AGG | 0.649181 | 3.4:+79094736 | None:intergenic |
GCACAATGGTGTCTTTAGCA+CGG | 0.650126 | 3.4:+79087961 | None:intergenic |
AAAATTCCCTTATAACCAGG+TGG | 0.650944 | 3.4:+79088426 | None:intergenic |
GGAGCAATCAATGTTGTTAG+GGG | 0.653532 | 3.4:-79093807 | MS.gene045344:CDS |
GGAACAGAAATCAAGTAATG+CGG | 0.657675 | 3.4:+79091577 | None:intergenic |
TAGGGTACATGGAATGTAAG+CGG | 0.660288 | 3.4:-79091362 | MS.gene045344:CDS |
CATGGGATTCAAACAACCTG+CGG | 0.661457 | 3.4:+79092727 | None:intergenic |
TGTTAAGTCTAACCGTGAAG+GGG | 0.661537 | 3.4:+79086895 | None:intergenic |
AATCAGGTCATAGACAGGGA+TGG | 0.665987 | 3.4:-79088074 | MS.gene045344:CDS |
ATTGGTGTGACATTGCAGAA+CGG | 0.669528 | 3.4:-79089240 | MS.gene045344:CDS |
TATATGATGAATTAAGGACC+TGG | 0.671281 | 3.4:-79087198 | MS.gene045344:intron |
GGACGGAGTCGTAATTGTGG+TGG | 0.682595 | 3.4:-79088002 | MS.gene045344:CDS |
TGAACCGGGAGAACTTGAAG+AGG | 0.683069 | 3.4:-79087499 | MS.gene045344:CDS |
GAAGTGGTGAAGTTGTGGCG+AGG | 0.713962 | 3.4:+79095297 | None:intergenic |
AGATTTGTTATTCTGCTGTG+GGG | 0.716210 | 3.4:-79092834 | MS.gene045344:CDS |
TATACCTGATGAAAGCACAA+TGG | 0.771476 | 3.4:+79087947 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 79086741 | 79095400 | 79086741 | ID=MS.gene045344 |
chr3.4 | mRNA | 79086741 | 79095400 | 79086741 | ID=MS.gene045344.t1;Parent=MS.gene045344 |
chr3.4 | exon | 79095242 | 79095400 | 79095242 | ID=MS.gene045344.t1.exon1;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79095242 | 79095400 | 79095242 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79094732 | 79094908 | 79094732 | ID=MS.gene045344.t1.exon2;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79094732 | 79094908 | 79094732 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79094462 | 79094576 | 79094462 | ID=MS.gene045344.t1.exon3;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79094462 | 79094576 | 79094462 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79093756 | 79093843 | 79093756 | ID=MS.gene045344.t1.exon4;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79093756 | 79093843 | 79093756 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79092721 | 79092929 | 79092721 | ID=MS.gene045344.t1.exon5;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79092721 | 79092929 | 79092721 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79092216 | 79092334 | 79092216 | ID=MS.gene045344.t1.exon6;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79092216 | 79092334 | 79092216 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79091717 | 79091866 | 79091717 | ID=MS.gene045344.t1.exon7;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79091717 | 79091866 | 79091717 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79091553 | 79091620 | 79091553 | ID=MS.gene045344.t1.exon8;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79091553 | 79091620 | 79091553 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79091353 | 79091458 | 79091353 | ID=MS.gene045344.t1.exon9;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79091353 | 79091458 | 79091353 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79090723 | 79090881 | 79090723 | ID=MS.gene045344.t1.exon10;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79090723 | 79090881 | 79090723 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79089348 | 79089401 | 79089348 | ID=MS.gene045344.t1.exon11;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79089348 | 79089401 | 79089348 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79089185 | 79089265 | 79089185 | ID=MS.gene045344.t1.exon12;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79089185 | 79089265 | 79089185 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79088386 | 79088523 | 79088386 | ID=MS.gene045344.t1.exon13;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79088386 | 79088523 | 79088386 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79087952 | 79088111 | 79087952 | ID=MS.gene045344.t1.exon14;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79087952 | 79088111 | 79087952 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79087452 | 79087531 | 79087452 | ID=MS.gene045344.t1.exon15;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79087452 | 79087531 | 79087452 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79087199 | 79087344 | 79087199 | ID=MS.gene045344.t1.exon16;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79087199 | 79087344 | 79087199 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79086908 | 79086965 | 79086908 | ID=MS.gene045344.t1.exon17;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79086908 | 79086965 | 79086908 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
chr3.4 | exon | 79086741 | 79086833 | 79086741 | ID=MS.gene045344.t1.exon18;Parent=MS.gene045344.t1 |
chr3.4 | CDS | 79086741 | 79086833 | 79086741 | ID=cds.MS.gene045344.t1;Parent=MS.gene045344.t1 |
Gene Sequence |
Protein sequence |