Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08981.t1 | XP_003629618.2 | 94.9 | 701 | 33 | 2 | 1 | 698 | 1 | 701 | 0.00E+00 | 1290.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08981.t1 | Q9LK39 | 65.8 | 669 | 217 | 6 | 31 | 698 | 42 | 699 | 5.5e-259 | 895.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08981.t1 | G7LH35 | 94.9 | 701 | 33 | 2 | 1 | 698 | 1 | 701 | 0.0e+00 | 1290.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08981.t1 | MTR_8g083170 | 94.579 | 701 | 35 | 2 | 1 | 698 | 1 | 701 | 0.0 | 1342 |
MS.gene08981.t1 | MTR_3g084450 | 72.881 | 708 | 171 | 7 | 1 | 698 | 1 | 697 | 0.0 | 1036 |
MS.gene08981.t1 | MTR_3g084470 | 74.425 | 696 | 156 | 8 | 14 | 709 | 30 | 703 | 0.0 | 1030 |
MS.gene08981.t1 | MTR_3g084450 | 78.222 | 450 | 96 | 2 | 250 | 698 | 41 | 489 | 0.0 | 725 |
MS.gene08981.t1 | MTR_3g084410 | 60.000 | 190 | 45 | 1 | 670 | 828 | 299 | 488 | 1.45e-62 | 219 |
MS.gene08981.t1 | MTR_8g083160 | 65.854 | 164 | 24 | 2 | 696 | 828 | 4 | 166 | 3.32e-61 | 204 |
MS.gene08981.t1 | MTR_7g109830 | 26.515 | 660 | 393 | 21 | 71 | 701 | 37 | 633 | 7.43e-44 | 169 |
MS.gene08981.t1 | MTR_1g086600 | 26.034 | 653 | 401 | 20 | 74 | 701 | 62 | 657 | 1.22e-42 | 166 |
MS.gene08981.t1 | MTR_1g104810 | 24.712 | 607 | 383 | 15 | 106 | 698 | 49 | 595 | 1.48e-40 | 159 |
MS.gene08981.t1 | MTR_1g104810 | 24.712 | 607 | 383 | 15 | 106 | 698 | 116 | 662 | 3.24e-40 | 159 |
MS.gene08981.t1 | MTR_5g009350 | 25.156 | 640 | 403 | 16 | 80 | 698 | 48 | 632 | 4.71e-37 | 149 |
MS.gene08981.t1 | MTR_5g009360 | 25.271 | 645 | 396 | 19 | 80 | 698 | 48 | 632 | 5.09e-37 | 149 |
MS.gene08981.t1 | MTR_5g009350 | 25.312 | 640 | 402 | 17 | 80 | 698 | 48 | 632 | 5.88e-37 | 148 |
MS.gene08981.t1 | MTR_5g009350 | 25.789 | 570 | 351 | 15 | 80 | 632 | 48 | 562 | 2.01e-36 | 145 |
MS.gene08981.t1 | MTR_5g009350 | 26.335 | 543 | 328 | 16 | 80 | 605 | 48 | 535 | 1.65e-35 | 143 |
MS.gene08981.t1 | MTR_1g030290 | 25.822 | 639 | 360 | 22 | 106 | 701 | 108 | 675 | 3.68e-32 | 134 |
MS.gene08981.t1 | MTR_8g099420 | 23.752 | 581 | 362 | 18 | 80 | 638 | 49 | 570 | 9.87e-31 | 129 |
MS.gene08981.t1 | MTR_5g009360 | 26.190 | 504 | 297 | 15 | 216 | 698 | 57 | 506 | 9.90e-31 | 128 |
MS.gene08981.t1 | MTR_3g082660 | 24.359 | 624 | 389 | 19 | 107 | 701 | 138 | 707 | 4.85e-30 | 127 |
MS.gene08981.t1 | MTR_3g460770 | 27.152 | 604 | 298 | 24 | 78 | 661 | 30 | 511 | 1.97e-28 | 121 |
MS.gene08981.t1 | MTR_3g087980 | 25.197 | 635 | 369 | 22 | 106 | 701 | 106 | 673 | 5.47e-28 | 120 |
MS.gene08981.t1 | MTR_1g026310 | 24.042 | 574 | 315 | 17 | 107 | 666 | 69 | 535 | 9.94e-25 | 110 |
MS.gene08981.t1 | MTR_4g057730 | 39.181 | 171 | 87 | 6 | 456 | 620 | 311 | 470 | 3.46e-21 | 98.2 |
MS.gene08981.t1 | MTR_4g057730 | 39.181 | 171 | 87 | 6 | 456 | 620 | 311 | 470 | 5.83e-21 | 98.2 |
MS.gene08981.t1 | MTR_1g073180 | 31.148 | 244 | 128 | 9 | 449 | 669 | 308 | 534 | 1.04e-19 | 94.0 |
MS.gene08981.t1 | MTR_2g095510 | 36.970 | 165 | 83 | 5 | 449 | 605 | 301 | 452 | 3.06e-18 | 89.4 |
MS.gene08981.t1 | MTR_4g057730 | 41.739 | 115 | 61 | 2 | 456 | 564 | 311 | 425 | 3.19e-18 | 89.0 |
MS.gene08981.t1 | MTR_1g073180 | 31.120 | 241 | 126 | 9 | 449 | 666 | 286 | 509 | 7.98e-18 | 88.2 |
MS.gene08981.t1 | MTR_5g027480 | 31.081 | 222 | 131 | 7 | 456 | 668 | 324 | 532 | 1.26e-17 | 87.8 |
MS.gene08981.t1 | MTR_4g077900 | 29.630 | 243 | 139 | 8 | 445 | 668 | 226 | 455 | 1.31e-17 | 87.0 |
MS.gene08981.t1 | MTR_1g063110 | 32.124 | 193 | 106 | 5 | 457 | 635 | 316 | 497 | 1.66e-17 | 87.4 |
MS.gene08981.t1 | MTR_5g027500 | 30.909 | 220 | 130 | 7 | 458 | 668 | 339 | 545 | 2.41e-17 | 86.7 |
MS.gene08981.t1 | MTR_3g088870 | 36.111 | 180 | 100 | 4 | 455 | 630 | 328 | 496 | 2.62e-17 | 86.7 |
MS.gene08981.t1 | MTR_2g095510 | 40.323 | 124 | 64 | 3 | 449 | 564 | 301 | 422 | 6.66e-17 | 84.7 |
MS.gene08981.t1 | MTR_2g105570 | 32.979 | 188 | 102 | 6 | 455 | 632 | 315 | 488 | 1.31e-16 | 84.3 |
MS.gene08981.t1 | MTR_1g063120 | 27.686 | 242 | 137 | 8 | 442 | 672 | 305 | 519 | 1.33e-16 | 84.3 |
MS.gene08981.t1 | MTR_3g088880 | 34.637 | 179 | 102 | 4 | 456 | 630 | 327 | 494 | 2.29e-16 | 83.6 |
MS.gene08981.t1 | MTR_5g007640 | 34.161 | 161 | 90 | 4 | 477 | 632 | 378 | 527 | 1.33e-15 | 81.3 |
MS.gene08981.t1 | MTR_1569s0010 | 35.227 | 176 | 91 | 8 | 455 | 621 | 303 | 464 | 1.03e-13 | 75.1 |
MS.gene08981.t1 | MTR_4g005750 | 32.955 | 176 | 94 | 6 | 455 | 620 | 308 | 469 | 3.21e-13 | 73.6 |
MS.gene08981.t1 | MTR_4g128337 | 36.090 | 133 | 70 | 4 | 477 | 605 | 340 | 461 | 1.41e-12 | 71.6 |
MS.gene08981.t1 | MTR_8g039720 | 32.402 | 179 | 106 | 4 | 454 | 628 | 332 | 499 | 1.51e-12 | 71.6 |
MS.gene08981.t1 | MTR_8g039720 | 24.286 | 280 | 185 | 6 | 85 | 357 | 46 | 305 | 8.99e-12 | 68.9 |
MS.gene08981.t1 | MTR_5g008820 | 28.627 | 255 | 143 | 8 | 434 | 674 | 279 | 508 | 2.02e-12 | 71.2 |
MS.gene08981.t1 | MTR_1g090737 | 31.414 | 191 | 95 | 6 | 456 | 630 | 334 | 504 | 5.09e-12 | 69.7 |
MS.gene08981.t1 | MTR_8g074040 | 32.804 | 189 | 101 | 8 | 454 | 628 | 345 | 521 | 5.40e-12 | 69.7 |
MS.gene08981.t1 | MTR_8g074040 | 32.804 | 189 | 101 | 8 | 454 | 628 | 227 | 403 | 6.26e-12 | 69.3 |
MS.gene08981.t1 | MTR_5g076220 | 30.729 | 192 | 101 | 6 | 454 | 628 | 305 | 481 | 1.67e-11 | 68.2 |
MS.gene08981.t1 | MTR_8g074120 | 29.730 | 185 | 104 | 7 | 452 | 622 | 254 | 426 | 7.22e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08981.t1 | AT3G23790 | 66.368 | 669 | 213 | 6 | 31 | 698 | 42 | 699 | 0.0 | 923 |
MS.gene08981.t1 | AT4G14070 | 65.120 | 668 | 210 | 6 | 31 | 698 | 60 | 704 | 0.0 | 894 |
MS.gene08981.t1 | AT4G14030 | 58.947 | 190 | 47 | 1 | 670 | 828 | 301 | 490 | 1.63e-62 | 219 |
MS.gene08981.t1 | AT4G14030 | 58.947 | 190 | 47 | 1 | 670 | 828 | 301 | 490 | 1.63e-62 | 219 |
MS.gene08981.t1 | AT3G23800 | 57.895 | 190 | 49 | 1 | 670 | 828 | 259 | 448 | 9.50e-62 | 216 |
MS.gene08981.t1 | AT3G23800 | 57.895 | 190 | 49 | 1 | 670 | 828 | 291 | 480 | 1.13e-61 | 216 |
MS.gene08981.t1 | AT4G14040 | 57.143 | 189 | 50 | 1 | 671 | 828 | 299 | 487 | 2.31e-60 | 213 |
MS.gene08981.t1 | AT2G47240 | 26.512 | 645 | 394 | 20 | 80 | 701 | 46 | 633 | 5.47e-46 | 176 |
MS.gene08981.t1 | AT2G47240 | 26.512 | 645 | 394 | 20 | 80 | 701 | 46 | 633 | 5.47e-46 | 176 |
MS.gene08981.t1 | AT2G47240 | 26.512 | 645 | 394 | 20 | 80 | 701 | 46 | 633 | 5.47e-46 | 176 |
MS.gene08981.t1 | AT5G27600 | 27.332 | 611 | 366 | 17 | 104 | 698 | 117 | 665 | 1.52e-45 | 175 |
MS.gene08981.t1 | AT2G47240 | 26.240 | 625 | 386 | 19 | 95 | 701 | 7 | 574 | 7.94e-45 | 171 |
MS.gene08981.t1 | AT3G05970 | 28.542 | 480 | 284 | 12 | 262 | 727 | 261 | 695 | 1.44e-42 | 166 |
MS.gene08981.t1 | AT1G64400 | 25.424 | 649 | 404 | 21 | 73 | 698 | 42 | 633 | 7.80e-39 | 154 |
MS.gene08981.t1 | AT4G23850 | 25.155 | 644 | 398 | 17 | 80 | 698 | 49 | 633 | 1.16e-38 | 154 |
MS.gene08981.t1 | AT1G49430 | 25.723 | 622 | 375 | 19 | 102 | 698 | 76 | 635 | 1.05e-37 | 150 |
MS.gene08981.t1 | AT4G11030 | 25.449 | 613 | 373 | 22 | 80 | 669 | 49 | 600 | 6.47e-36 | 145 |
MS.gene08981.t1 | AT1G77590 | 25.201 | 623 | 381 | 18 | 106 | 701 | 107 | 671 | 1.73e-35 | 144 |
MS.gene08981.t1 | AT2G04350 | 24.519 | 624 | 388 | 19 | 107 | 701 | 131 | 700 | 1.15e-31 | 132 |
MS.gene08981.t1 | AT2G04350 | 24.519 | 624 | 388 | 19 | 107 | 701 | 131 | 700 | 1.15e-31 | 132 |
MS.gene08981.t1 | AT1G49430 | 26.360 | 478 | 282 | 15 | 102 | 560 | 76 | 502 | 1.40e-30 | 127 |
MS.gene08981.t1 | AT1G20510 | 25.947 | 528 | 275 | 16 | 85 | 605 | 39 | 457 | 3.82e-30 | 125 |
MS.gene08981.t1 | AT1G20510 | 25.659 | 569 | 305 | 17 | 85 | 646 | 39 | 496 | 4.25e-30 | 126 |
MS.gene08981.t1 | AT1G20510 | 25.615 | 488 | 258 | 14 | 85 | 565 | 39 | 428 | 3.64e-28 | 119 |
MS.gene08981.t1 | AT1G77590 | 26.068 | 468 | 279 | 16 | 261 | 701 | 98 | 525 | 3.41e-27 | 117 |
MS.gene08981.t1 | AT5G63380 | 28.691 | 359 | 158 | 14 | 259 | 606 | 201 | 472 | 9.71e-21 | 97.4 |
MS.gene08981.t1 | AT1G20480 | 23.356 | 578 | 323 | 20 | 37 | 605 | 12 | 478 | 2.96e-20 | 95.9 |
MS.gene08981.t1 | AT3G21240 | 31.225 | 253 | 129 | 9 | 412 | 632 | 255 | 494 | 4.96e-20 | 95.1 |
MS.gene08981.t1 | AT4G05160 | 28.852 | 305 | 166 | 11 | 383 | 672 | 243 | 511 | 8.35e-20 | 94.4 |
MS.gene08981.t1 | AT4G05160 | 25.926 | 243 | 152 | 8 | 81 | 320 | 33 | 250 | 1.18e-13 | 75.1 |
MS.gene08981.t1 | AT3G21240 | 32.231 | 242 | 119 | 9 | 412 | 621 | 255 | 483 | 1.72e-19 | 93.2 |
MS.gene08981.t1 | AT3G21240 | 32.231 | 242 | 119 | 9 | 412 | 621 | 255 | 483 | 1.72e-19 | 93.2 |
MS.gene08981.t1 | AT3G21230 | 34.463 | 177 | 93 | 6 | 454 | 621 | 335 | 497 | 5.31e-18 | 89.0 |
MS.gene08981.t1 | AT3G21230 | 34.463 | 177 | 93 | 6 | 454 | 621 | 335 | 497 | 5.31e-18 | 89.0 |
MS.gene08981.t1 | AT3G21230 | 34.463 | 177 | 93 | 6 | 454 | 621 | 335 | 497 | 6.05e-18 | 88.6 |
MS.gene08981.t1 | AT4G19010 | 28.899 | 218 | 131 | 7 | 458 | 665 | 333 | 536 | 1.40e-16 | 84.3 |
MS.gene08981.t1 | AT1G51680 | 29.646 | 226 | 128 | 7 | 455 | 673 | 328 | 529 | 1.17e-14 | 78.2 |
MS.gene08981.t1 | AT1G51680 | 31.892 | 185 | 108 | 5 | 455 | 632 | 328 | 501 | 1.59e-14 | 77.8 |
MS.gene08981.t1 | AT1G65060 | 32.919 | 161 | 92 | 4 | 477 | 632 | 355 | 504 | 5.59e-14 | 76.3 |
MS.gene08981.t1 | AT1G51680 | 32.759 | 174 | 99 | 5 | 455 | 621 | 328 | 490 | 7.69e-14 | 75.5 |
MS.gene08981.t1 | AT1G21530 | 30.159 | 189 | 107 | 7 | 454 | 628 | 300 | 477 | 1.78e-13 | 74.3 |
MS.gene08981.t1 | AT1G21530 | 30.159 | 189 | 107 | 7 | 454 | 628 | 302 | 479 | 1.90e-13 | 74.3 |
MS.gene08981.t1 | AT1G75960 | 31.746 | 189 | 103 | 7 | 454 | 628 | 303 | 479 | 5.28e-13 | 72.8 |
MS.gene08981.t1 | AT1G20500 | 30.374 | 214 | 127 | 7 | 456 | 661 | 321 | 520 | 1.62e-12 | 71.2 |
MS.gene08981.t1 | AT1G68270 | 28.814 | 236 | 137 | 9 | 454 | 674 | 276 | 495 | 2.69e-12 | 70.9 |
MS.gene08981.t1 | AT1G21540 | 27.350 | 234 | 136 | 8 | 454 | 673 | 305 | 518 | 3.83e-12 | 70.1 |
MS.gene08981.t1 | AT1G77240 | 25.896 | 251 | 137 | 9 | 401 | 628 | 256 | 480 | 4.32e-12 | 70.1 |
MS.gene08981.t1 | AT1G65060 | 37.234 | 94 | 54 | 1 | 477 | 565 | 355 | 448 | 1.94e-11 | 67.8 |
MS.gene08981.t1 | AT3G48990 | 29.240 | 171 | 104 | 6 | 461 | 628 | 294 | 450 | 3.22e-11 | 67.0 |
Find 177 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTCAATGTTGGACTGTTTA+TGG | 0.106185 | 4.4:-14936169 | MS.gene08981:CDS |
GGAAAGTTGTTCCTGATATT+TGG | 0.147820 | 4.4:-14943127 | MS.gene08981:CDS |
GCAATTCGGTTAAACATTTC+AGG | 0.170564 | 4.4:+14941681 | None:intergenic |
TCCAAAGTCAACAAAGAAAT+TGG | 0.170705 | 4.4:+14931190 | None:intergenic |
GCAGAAGGCCTAAGAGTTAT+TGG | 0.224398 | 4.4:-14942903 | MS.gene08981:CDS |
TATCCGGAGCTTAGAGAAAA+AGG | 0.234806 | 4.4:-14931269 | MS.gene08981:CDS |
ATGATTCAGCTTAGTTTAGA+TGG | 0.263318 | 4.4:-14931344 | MS.gene08981:CDS |
ATTATTTCCAATTCATCTTC+TGG | 0.275384 | 4.4:-14936126 | MS.gene08981:CDS |
TCAGAATCTCCGTTTCAAAT+TGG | 0.278300 | 4.4:-14932779 | MS.gene08981:CDS |
CCCAATTTCTTTGTTGACTT+TGG | 0.290445 | 4.4:-14931191 | MS.gene08981:CDS |
GTAGTTGGAGCAGGCAATTT+TGG | 0.295704 | 4.4:-14942931 | MS.gene08981:intron |
GGCTAGTAGATATCTGCTTC+TGG | 0.304018 | 4.4:+14936738 | None:intergenic |
TGAAGGTTATTGGATCTGTT+GGG | 0.308004 | 4.4:-14934868 | MS.gene08981:intron |
TTTCTTCATCGATCAGCTTC+AGG | 0.311752 | 4.4:+14941595 | None:intergenic |
TTTCATGGAAGTCATAGATT+TGG | 0.317945 | 4.4:-14941550 | MS.gene08981:CDS |
TTCAATGTTGGACTGTTTAT+GGG | 0.331304 | 4.4:-14936168 | MS.gene08981:CDS |
TTGAATTCCGTGTGCTGAAC+TGG | 0.336809 | 4.4:+14934842 | None:intergenic |
GTGACTGCACTTCAGATATA+TGG | 0.339392 | 4.4:-14931118 | MS.gene08981:CDS |
ATTCAACAAATTGTAGTTGT+TGG | 0.347168 | 4.4:-14933305 | MS.gene08981:CDS |
TTTGTTGCCAGAAGATGAAT+TGG | 0.348537 | 4.4:+14936119 | None:intergenic |
TGGGTAAGCATAACACCTTT+TGG | 0.351150 | 4.4:+14937970 | None:intergenic |
GTAATGAACTTTCTAGAAAA+GGG | 0.356007 | 4.4:+14943198 | None:intergenic |
TTCATGGAAGTCATAGATTT+GGG | 0.356900 | 4.4:-14941549 | MS.gene08981:CDS |
GAAAGTTCATTACTTGTTGT+TGG | 0.362100 | 4.4:-14943188 | MS.gene08981:CDS |
AGTAAAATCCATTCAGCTAT+TGG | 0.362989 | 4.4:-14936086 | MS.gene08981:CDS |
AAAGTAGTAGATTCTGAAAC+TGG | 0.363377 | 4.4:-14934821 | MS.gene08981:CDS |
AAGGCCTGGTTTGTAGCTAA+TGG | 0.364321 | 4.4:+14934476 | None:intergenic |
GGTCCCAATCTTTAGTTTCA+TGG | 0.370768 | 4.4:-14941565 | MS.gene08981:CDS |
GCAGAAGATCTCCAAATATC+AGG | 0.371470 | 4.4:+14943116 | None:intergenic |
CCATCGGAACCTTCTGCATC+AGG | 0.372239 | 4.4:-14937950 | MS.gene08981:intron |
TTGAAGGTTATTGGATCTGT+TGG | 0.378766 | 4.4:-14934869 | MS.gene08981:intron |
GACACTATTGTGCTTTCAAC+AGG | 0.379738 | 4.4:-14934341 | MS.gene08981:intron |
ATTGCTCCCCATCATTCTAC+TGG | 0.388461 | 4.4:-14934413 | MS.gene08981:CDS |
GCCTTACTCCAATAACTCTT+AGG | 0.394676 | 4.4:+14942895 | None:intergenic |
TTCAAAACTTCTTCACTGTT+CGG | 0.407440 | 4.4:+14933136 | None:intergenic |
ACAAATTGTAGTTGTTGGTC+AGG | 0.409385 | 4.4:-14933300 | MS.gene08981:intron |
AGTAATGAACTTTCTAGAAA+AGG | 0.412869 | 4.4:+14943197 | None:intergenic |
TAAACGAACCCTTCACGGTT+AGG | 0.415589 | 4.4:-14932742 | MS.gene08981:intron |
ATGCCAGTCTTTGAATAGAA+TGG | 0.415748 | 4.4:+14941654 | None:intergenic |
TTCAAAATGCCCTTTGAACC+TGG | 0.416783 | 4.4:+14934785 | None:intergenic |
TGGCTGAATACTGGTGATCT+AGG | 0.421573 | 4.4:-14934440 | MS.gene08981:CDS |
CCAAAGTCAACAAAGAAATT+GGG | 0.425013 | 4.4:+14931191 | None:intergenic |
GTGAAAGTGCAGAATGGATA+TGG | 0.425784 | 4.4:-14935174 | MS.gene08981:CDS |
TCTTGTAAACGAACCCTTCA+CGG | 0.426690 | 4.4:-14932747 | MS.gene08981:CDS |
GGTCGTCGAACAGCAATAAC+TGG | 0.432050 | 4.4:+14935135 | None:intergenic |
ACTTCCATGAAACTAAAGAT+TGG | 0.434054 | 4.4:+14941561 | None:intergenic |
ATATACACAAGTGGAACAAC+TGG | 0.435077 | 4.4:-14937997 | MS.gene08981:CDS |
ATTAGCTACAAACCAGGCCT+TGG | 0.438425 | 4.4:-14934474 | MS.gene08981:CDS |
GACTTTGGAACTGAGCCTAA+TGG | 0.439583 | 4.4:-14931176 | MS.gene08981:CDS |
GACAAGGTGTTCGTTGGTAA+TGG | 0.440700 | 4.4:+14943338 | None:intergenic |
TATCTGCACTGTTTCTGTGT+TGG | 0.441757 | 4.4:+14943235 | None:intergenic |
CTCAACCATGACATATAATC+AGG | 0.443393 | 4.4:-14943042 | MS.gene08981:intron |
TGTTTATGTACTTTGTGAAT+CGG | 0.445597 | 4.4:-14932074 | MS.gene08981:CDS |
AAGGATGGCTGGCTGAATAC+TGG | 0.445795 | 4.4:-14934449 | MS.gene08981:CDS |
AAGTGTCAGCTTAGCATACA+TGG | 0.448650 | 4.4:-14936681 | MS.gene08981:CDS |
TGTACAAGGGAGGGACCATT+AGG | 0.453935 | 4.4:+14931161 | None:intergenic |
TTCTTAGCATGCTGCCACCT+TGG | 0.465345 | 4.4:-14937560 | MS.gene08981:CDS |
AGAAGGTGAAAATGTTGAAC+CGG | 0.465849 | 4.4:-14933363 | MS.gene08981:intron |
GTATCTATTGTAGTTGGAGC+AGG | 0.466069 | 4.4:-14942940 | MS.gene08981:intron |
CAATTCGGTTAAACATTTCA+GGG | 0.466083 | 4.4:+14941682 | None:intergenic |
TACAAACCAGGCCTTGGATA+AGG | 0.468677 | 4.4:-14934468 | MS.gene08981:CDS |
GCACTACAGGCTGGAATAAG+TGG | 0.470049 | 4.4:-14935320 | MS.gene08981:intron |
CTTCCATGAAACTAAAGATT+GGG | 0.478570 | 4.4:+14941562 | None:intergenic |
CTGATTATATGTCATGGTTG+AGG | 0.481462 | 4.4:+14943043 | None:intergenic |
CACTACAGGCTGGAATAAGT+GGG | 0.483325 | 4.4:-14935319 | MS.gene08981:intron |
GGAATATAAACGTATTTATG+AGG | 0.483400 | 4.4:-14936660 | MS.gene08981:intron |
AGCCATCCTTATCCAAGGCC+TGG | 0.486245 | 4.4:+14934462 | None:intergenic |
CATACCTGGCCATTCAATAC+AGG | 0.486971 | 4.4:+14932006 | None:intergenic |
GCCTAAGAGTTATTGGAGTA+AGG | 0.490095 | 4.4:-14942896 | MS.gene08981:CDS |
GTTCTTCCACCAGGTTCAAA+GGG | 0.490285 | 4.4:-14934794 | MS.gene08981:CDS |
GGCTGAATACTGGTGATCTA+GGG | 0.496008 | 4.4:-14934439 | MS.gene08981:CDS |
ATATAGGATAAGCGACGTCT+TGG | 0.498942 | 4.4:-14933172 | MS.gene08981:intron |
AATCTGTCTCCAACCTCAGC+AGG | 0.499432 | 4.4:+14937582 | None:intergenic |
TTGATAGTCCAATAGCTGAA+TGG | 0.499961 | 4.4:+14936078 | None:intergenic |
TTGAATTAAGCTACTCCTCA+TGG | 0.500233 | 4.4:+14933322 | None:intergenic |
GAAGGTTATTGGATCTGTTG+GGG | 0.501647 | 4.4:-14934867 | MS.gene08981:intron |
GGTTCGTTTACAAGAAGGAT+TGG | 0.501668 | 4.4:+14932755 | None:intergenic |
TGATTATATGTCATGGTTGA+GGG | 0.505022 | 4.4:+14943044 | None:intergenic |
TTGCAGATAATTCATGTCGT+TGG | 0.506026 | 4.4:-14942851 | MS.gene08981:CDS |
AAACCATTCTATTCAAAGAC+TGG | 0.506704 | 4.4:-14941657 | MS.gene08981:CDS |
ATGATGATATTGATCTACTA+AGG | 0.509052 | 4.4:+14943070 | None:intergenic |
TTCCAGAACCTAACCGTGAA+GGG | 0.509659 | 4.4:+14932734 | None:intergenic |
ACATAGCTTACATTACATCT+AGG | 0.510214 | 4.4:+14935114 | None:intergenic |
ACAACGAGGAAGAGCATAGT+TGG | 0.513283 | 4.4:+14943277 | None:intergenic |
GACTCCGCCCAGTAGAATGA+TGG | 0.514563 | 4.4:+14934405 | None:intergenic |
AGTTCTTCCACCAGGTTCAA+AGG | 0.514899 | 4.4:-14934795 | MS.gene08981:CDS |
AGGATTGGTCCAATTTGAAA+CGG | 0.520980 | 4.4:+14932770 | None:intergenic |
AGGGGTCCACCAGTGATGAA+TGG | 0.521283 | 4.4:-14934758 | MS.gene08981:CDS |
GGAGCAATCAATGTGGTAAG+AGG | 0.521829 | 4.4:-14941944 | MS.gene08981:CDS |
TTCCATCGTCAATTCAATGT+TGG | 0.522836 | 4.4:-14936180 | MS.gene08981:CDS |
AGAAATTGGGCTTAATCTTG+AGG | 0.528930 | 4.4:+14931204 | None:intergenic |
CTGTAGACTCATCAGATGAC+TGG | 0.530977 | 4.4:-14943148 | MS.gene08981:CDS |
AACATTGAATTGACGATGGA+AGG | 0.533100 | 4.4:+14936182 | None:intergenic |
CGTTGGCTAGTTGCAGATCA+AGG | 0.533642 | 4.4:-14942834 | MS.gene08981:intron |
TGAAGGGTTCGTTTACAAGA+AGG | 0.537649 | 4.4:+14932750 | None:intergenic |
AGGCCTTGGATAAGGATGGC+TGG | 0.538910 | 4.4:-14934460 | MS.gene08981:CDS |
CAGAAATCATGTAATGTGGT+TGG | 0.539842 | 4.4:+14937202 | None:intergenic |
AAATATACAGCCACTCTGAA+AGG | 0.541396 | 4.4:-14941892 | MS.gene08981:intron |
TGATTCAGCTTAGTTTAGAT+GGG | 0.541566 | 4.4:-14931343 | MS.gene08981:CDS |
AAATCCTGTATTGAATGGCC+AGG | 0.543584 | 4.4:-14932010 | MS.gene08981:intron |
GATATCTCATCTCATGTACA+AGG | 0.545719 | 4.4:+14931147 | None:intergenic |
ACTAACAATATCAGAACTGA+TGG | 0.549027 | 4.4:+14933084 | None:intergenic |
TTCAGCTATTGGACTATCAA+AGG | 0.550126 | 4.4:-14936075 | MS.gene08981:intron |
TAATACCTTCAGGTTTCTCA+CGG | 0.553913 | 4.4:+14937473 | None:intergenic |
TTGTAGTATCCATTCATCAC+TGG | 0.555403 | 4.4:+14934749 | None:intergenic |
ACTCCGCCCAGTAGAATGAT+GGG | 0.558505 | 4.4:+14934406 | None:intergenic |
AAAGACCTGATTATATGTCA+TGG | 0.562961 | 4.4:+14943037 | None:intergenic |
GCAGCTTCTTCAAGTTCAGC+CGG | 0.565788 | 4.4:+14933344 | None:intergenic |
GGAACAACTGGAAATCCAAA+AGG | 0.565966 | 4.4:-14937985 | MS.gene08981:CDS |
CCTGATGCAGAAGGTTCCGA+TGG | 0.568264 | 4.4:+14937950 | None:intergenic |
ATGAATTGGAAATAATATTG+TGG | 0.568324 | 4.4:+14936133 | None:intergenic |
GCTACTCTTATATACACAAG+TGG | 0.572002 | 4.4:-14938006 | MS.gene08981:CDS |
TGATGGTGGTGGTGAAGAAG+TGG | 0.574216 | 4.4:+14943312 | None:intergenic |
CAGTTCTGATATTGTTAGTG+AGG | 0.576268 | 4.4:-14933080 | MS.gene08981:CDS |
TGCAGGGTAAATGTTTAACA+AGG | 0.576611 | 4.4:-14936217 | MS.gene08981:intron |
TTTCAGGGAAATAAGTTGAG+AGG | 0.577842 | 4.4:-14931377 | MS.gene08981:intron |
ATTCCAGAACCTAACCGTGA+AGG | 0.579129 | 4.4:+14932733 | None:intergenic |
TTGCTCCCCATCATTCTACT+GGG | 0.582741 | 4.4:-14934412 | MS.gene08981:CDS |
CAGGGAAATAAGTTGAGAGG+AGG | 0.582930 | 4.4:-14931374 | MS.gene08981:CDS |
CTCTAGTGGTGTGATTGTTG+TGG | 0.584202 | 4.4:-14934378 | MS.gene08981:CDS |
AGTCTAGGCATGATGGCAAG+TGG | 0.585928 | 4.4:-14941965 | MS.gene08981:intron |
ATTGGAGTGAAAGTGCAGAA+TGG | 0.587020 | 4.4:-14935180 | MS.gene08981:CDS |
GTACATGAGATGAGATATCC+TGG | 0.587446 | 4.4:-14931143 | MS.gene08981:CDS |
CTCATCTCATGTACAAGGGA+GGG | 0.595355 | 4.4:+14931152 | None:intergenic |
TACTTTGTGAATCGGTTGCA+CGG | 0.595756 | 4.4:-14932066 | MS.gene08981:CDS |
TAGTATCCATTCATCACTGG+TGG | 0.597092 | 4.4:+14934752 | None:intergenic |
GACGCTGTACCTGCTGAGGT+TGG | 0.603661 | 4.4:-14937591 | MS.gene08981:CDS |
TCTGAAGTGCAGTCACCACC+AGG | 0.605420 | 4.4:+14931125 | None:intergenic |
AAACATTTCAGGGCCGTCCA+CGG | 0.605490 | 4.4:+14941692 | None:intergenic |
TGGTAGGACAAGGTGTTCGT+TGG | 0.614688 | 4.4:+14943332 | None:intergenic |
TAATGAACTTTCTAGAAAAG+GGG | 0.616322 | 4.4:+14943199 | None:intergenic |
ACTGGTGAAGTTCTTCCACC+AGG | 0.616697 | 4.4:-14934803 | MS.gene08981:CDS |
AGTGTTGCACTAACCGTGGA+CGG | 0.617266 | 4.4:-14941705 | MS.gene08981:CDS |
CAGCCAGCCATCCTTATCCA+AGG | 0.618824 | 4.4:+14934457 | None:intergenic |
GGGCGGAGTCGTAACTCTAG+TGG | 0.623923 | 4.4:-14934392 | MS.gene08981:CDS |
TGGGGTTCCAGTTCAGCACA+CGG | 0.624504 | 4.4:-14934849 | MS.gene08981:CDS |
ATGGGACGCTGTACCTGCTG+AGG | 0.627264 | 4.4:-14937595 | MS.gene08981:CDS |
AACCAGGCCTTGGATAAGGA+TGG | 0.627793 | 4.4:-14934464 | MS.gene08981:CDS |
GCTGATCGATGAAGAAAACA+AGG | 0.633861 | 4.4:-14941589 | MS.gene08981:CDS |
GCTCTTTCGTATGCATGCCA+AGG | 0.636647 | 4.4:+14937543 | None:intergenic |
TCTCATCTCATGTACAAGGG+AGG | 0.638034 | 4.4:+14931151 | None:intergenic |
CTTTCGTATGCATGCCAAGG+TGG | 0.638582 | 4.4:+14937546 | None:intergenic |
AAACTAAGCTGAATCATCAG+AGG | 0.639898 | 4.4:+14931350 | None:intergenic |
AGTGATGAATGGATACTACA+AGG | 0.639900 | 4.4:-14934747 | MS.gene08981:intron |
CTCCCCATCATTCTACTGGG+CGG | 0.640998 | 4.4:-14934409 | MS.gene08981:CDS |
AGTGGTGTGATTGTTGTGGA+CGG | 0.642531 | 4.4:-14934374 | MS.gene08981:CDS |
GGAAGAGCATAGTTGGTGCG+AGG | 0.646130 | 4.4:+14943284 | None:intergenic |
AAAATGCCCTTTGAACCTGG+TGG | 0.647074 | 4.4:+14934788 | None:intergenic |
GGTGCGAGGAAGAGTGATGG+TGG | 0.648174 | 4.4:+14943298 | None:intergenic |
GCGAGGAAGAGTGATGGTGG+TGG | 0.650094 | 4.4:+14943301 | None:intergenic |
TGAATACTGGTGATCTAGGG+TGG | 0.651805 | 4.4:-14934436 | MS.gene08981:CDS |
GTCCAACATTGAATTGACGA+TGG | 0.652243 | 4.4:+14936178 | None:intergenic |
GAATCCATTAGCTACAAACC+AGG | 0.658128 | 4.4:-14934480 | MS.gene08981:CDS |
TATAAGACAATATAACATTG+AGG | 0.658414 | 4.4:-14932040 | MS.gene08981:CDS |
ACTACAGGCTGGAATAAGTG+GGG | 0.664331 | 4.4:-14935318 | MS.gene08981:intron |
GGTGGTGGTGAAGAAGTGGT+AGG | 0.666201 | 4.4:+14943316 | None:intergenic |
GGAACAGAAATCATGTAATG+TGG | 0.670609 | 4.4:+14937198 | None:intergenic |
CTGATGCAGAAGGTTCCGAT+GGG | 0.672718 | 4.4:+14937951 | None:intergenic |
ATTTCCAAAACCTTTCAGAG+TGG | 0.673273 | 4.4:+14941882 | None:intergenic |
GTAATGAAACCTGATGCAGA+AGG | 0.675182 | 4.4:+14937941 | None:intergenic |
CTACAGGCTGGAATAAGTGG+GGG | 0.675424 | 4.4:-14935317 | MS.gene08981:intron |
TATATAAAGAACTAAAGACC+TGG | 0.675467 | 4.4:-14933039 | MS.gene08981:intron |
AACTTGAAGAAGCTGCCATG+AGG | 0.680892 | 4.4:-14933337 | MS.gene08981:CDS |
ATATCTCATCTCATGTACAA+GGG | 0.681953 | 4.4:+14931148 | None:intergenic |
CTTCAGTGTTGCACTAACCG+TGG | 0.683372 | 4.4:-14941709 | MS.gene08981:intron |
CACAACCGTGAGAAACCTGA+AGG | 0.691000 | 4.4:-14937478 | MS.gene08981:intron |
CTCCGCCCAGTAGAATGATG+GGG | 0.691863 | 4.4:+14934407 | None:intergenic |
AAGGTGTTATGCTTACCCAT+CGG | 0.697644 | 4.4:-14937966 | MS.gene08981:CDS |
GGTGAAGAAGTGGTAGGACA+AGG | 0.700727 | 4.4:+14943322 | None:intergenic |
TCAATGTGGTAAGAGGCTCA+AGG | 0.708762 | 4.4:-14941937 | MS.gene08981:CDS |
TTTGGGACGAGAGAGTCGCA+TGG | 0.718212 | 4.4:-14941532 | MS.gene08981:CDS |
GTTGGTGCGAGGAAGAGTGA+TGG | 0.738075 | 4.4:+14943295 | None:intergenic |
TTATATGTCATGGTTGAGGG+AGG | 0.741546 | 4.4:+14943047 | None:intergenic |
GATCGATGAAGAAAACAAGG+AGG | 0.765475 | 4.4:-14941586 | MS.gene08981:CDS |
GAGAAGACACGAAAACAACG+AGG | 0.778809 | 4.4:+14943263 | None:intergenic |
GGCAAGTGGAGCAATCAATG+TGG | 0.778974 | 4.4:-14941951 | MS.gene08981:CDS |
CATGAGATGAGATATCCTGG+TGG | 0.828583 | 4.4:-14931140 | MS.gene08981:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 14931112 | 14943372 | 14931112 | ID=MS.gene08981 |
chr4.4 | mRNA | 14931112 | 14943372 | 14931112 | ID=MS.gene08981.t1;Parent=MS.gene08981 |
chr4.4 | exon | 14943043 | 14943372 | 14943043 | ID=MS.gene08981.t1.exon1;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14943043 | 14943372 | 14943043 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14942835 | 14942949 | 14942835 | ID=MS.gene08981.t1.exon2;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14942835 | 14942949 | 14942835 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14941893 | 14941980 | 14941893 | ID=MS.gene08981.t1.exon3;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14941893 | 14941980 | 14941893 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14941508 | 14941725 | 14941508 | ID=MS.gene08981.t1.exon4;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14941508 | 14941725 | 14941508 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14937951 | 14938069 | 14937951 | ID=MS.gene08981.t1.exon5;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14937951 | 14938069 | 14937951 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14937479 | 14937628 | 14937479 | ID=MS.gene08981.t1.exon6;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14937479 | 14937628 | 14937479 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14937174 | 14937241 | 14937174 | ID=MS.gene08981.t1.exon7;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14937174 | 14937241 | 14937174 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14936661 | 14936766 | 14936661 | ID=MS.gene08981.t1.exon8;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14936661 | 14936766 | 14936661 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14936076 | 14936234 | 14936076 | ID=MS.gene08981.t1.exon9;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14936076 | 14936234 | 14936076 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14935280 | 14935333 | 14935280 | ID=MS.gene08981.t1.exon10;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14935280 | 14935333 | 14935280 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14935125 | 14935205 | 14935125 | ID=MS.gene08981.t1.exon11;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14935125 | 14935205 | 14935125 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14934748 | 14934885 | 14934748 | ID=MS.gene08981.t1.exon12;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14934748 | 14934885 | 14934748 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14934342 | 14934501 | 14934342 | ID=MS.gene08981.t1.exon13;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14934342 | 14934501 | 14934342 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14933301 | 14933380 | 14933301 | ID=MS.gene08981.t1.exon14;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14933301 | 14933380 | 14933301 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14933040 | 14933188 | 14933040 | ID=MS.gene08981.t1.exon15;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14933040 | 14933188 | 14933040 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14932743 | 14932805 | 14932743 | ID=MS.gene08981.t1.exon16;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14932743 | 14932805 | 14932743 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14932011 | 14932137 | 14932011 | ID=MS.gene08981.t1.exon17;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14932011 | 14932137 | 14932011 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
chr4.4 | exon | 14931112 | 14931393 | 14931112 | ID=MS.gene08981.t1.exon18;Parent=MS.gene08981.t1 |
chr4.4 | CDS | 14931112 | 14931393 | 14931112 | ID=cds.MS.gene08981.t1;Parent=MS.gene08981.t1 |
Gene Sequence |
Protein sequence |