Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75659.t1 | XP_003601700.2 | 95.8 | 719 | 26 | 2 | 1 | 719 | 1 | 715 | 0.00E+00 | 1377.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75659.t1 | Q9LK39 | 69.2 | 682 | 205 | 3 | 42 | 719 | 42 | 722 | 2.1e-286 | 986.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75659.t1 | G7JAT4 | 95.8 | 719 | 26 | 2 | 1 | 719 | 1 | 715 | 0.0e+00 | 1377.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75659.t1 | MTR_3g084470 | 95.828 | 719 | 26 | 2 | 1 | 719 | 1 | 715 | 0.0 | 1426 |
MS.gene75659.t1 | MTR_3g084450 | 82.782 | 726 | 112 | 5 | 1 | 719 | 1 | 720 | 0.0 | 1238 |
MS.gene75659.t1 | MTR_8g083170 | 75.613 | 734 | 154 | 7 | 1 | 719 | 1 | 724 | 0.0 | 1114 |
MS.gene75659.t1 | MTR_3g084450 | 83.198 | 494 | 82 | 1 | 227 | 719 | 19 | 512 | 0.0 | 860 |
MS.gene75659.t1 | MTR_1g104810 | 26.899 | 632 | 378 | 16 | 108 | 718 | 49 | 617 | 4.06e-51 | 189 |
MS.gene75659.t1 | MTR_1g104810 | 26.899 | 632 | 378 | 16 | 108 | 718 | 116 | 684 | 7.67e-51 | 189 |
MS.gene75659.t1 | MTR_1g034360 | 27.108 | 664 | 401 | 20 | 82 | 719 | 48 | 654 | 4.43e-49 | 183 |
MS.gene75659.t1 | MTR_7g109830 | 26.270 | 689 | 416 | 19 | 60 | 719 | 28 | 653 | 7.24e-48 | 180 |
MS.gene75659.t1 | MTR_1g086600 | 27.126 | 682 | 418 | 18 | 64 | 719 | 49 | 677 | 1.17e-47 | 179 |
MS.gene75659.t1 | MTR_4g068670 | 25.669 | 635 | 389 | 19 | 108 | 719 | 78 | 652 | 2.22e-44 | 169 |
MS.gene75659.t1 | MTR_5g009350 | 26.877 | 666 | 401 | 24 | 82 | 719 | 48 | 655 | 2.11e-43 | 167 |
MS.gene75659.t1 | MTR_1g030290 | 25.736 | 645 | 387 | 19 | 108 | 718 | 108 | 694 | 4.72e-42 | 163 |
MS.gene75659.t1 | MTR_5g009360 | 25.637 | 667 | 408 | 21 | 82 | 719 | 48 | 655 | 1.95e-41 | 161 |
MS.gene75659.t1 | MTR_5g009350 | 26.748 | 658 | 396 | 24 | 82 | 711 | 48 | 647 | 5.46e-41 | 159 |
MS.gene75659.t1 | MTR_3g082660 | 25.697 | 646 | 387 | 24 | 109 | 718 | 138 | 726 | 2.41e-40 | 158 |
MS.gene75659.t1 | MTR_8g099420 | 25.224 | 670 | 407 | 21 | 82 | 719 | 49 | 656 | 4.28e-40 | 157 |
MS.gene75659.t1 | MTR_3g087980 | 24.341 | 645 | 396 | 18 | 108 | 718 | 106 | 692 | 1.56e-37 | 150 |
MS.gene75659.t1 | MTR_5g009360 | 26.953 | 512 | 300 | 17 | 227 | 719 | 73 | 529 | 3.24e-34 | 138 |
MS.gene75659.t1 | MTR_5g009350 | 25.480 | 573 | 346 | 20 | 82 | 631 | 48 | 562 | 5.29e-34 | 138 |
MS.gene75659.t1 | MTR_5g009350 | 26.190 | 546 | 322 | 20 | 82 | 604 | 48 | 535 | 1.19e-33 | 137 |
MS.gene75659.t1 | MTR_1g026310 | 25.612 | 531 | 284 | 16 | 109 | 629 | 69 | 498 | 4.04e-24 | 107 |
MS.gene75659.t1 | MTR_5g007640 | 22.261 | 575 | 314 | 13 | 107 | 667 | 96 | 551 | 4.63e-21 | 98.2 |
MS.gene75659.t1 | MTR_8g039720 | 24.170 | 542 | 280 | 18 | 109 | 627 | 66 | 499 | 1.89e-19 | 93.2 |
MS.gene75659.t1 | MTR_2g105570 | 29.213 | 267 | 141 | 9 | 454 | 709 | 315 | 544 | 4.80e-19 | 91.7 |
MS.gene75659.t1 | MTR_2g095510 | 29.949 | 197 | 113 | 4 | 473 | 667 | 330 | 503 | 2.68e-17 | 86.3 |
MS.gene75659.t1 | MTR_2g095510 | 26.724 | 232 | 137 | 8 | 93 | 319 | 42 | 245 | 5.66e-11 | 66.2 |
MS.gene75659.t1 | MTR_4g057730 | 29.388 | 245 | 137 | 7 | 472 | 714 | 332 | 542 | 2.88e-17 | 86.3 |
MS.gene75659.t1 | MTR_4g057730 | 35.333 | 150 | 84 | 4 | 472 | 619 | 332 | 470 | 5.46e-17 | 84.7 |
MS.gene75659.t1 | MTR_4g057730 | 24.576 | 236 | 152 | 7 | 86 | 318 | 35 | 247 | 7.56e-11 | 65.5 |
MS.gene75659.t1 | MTR_3g460770 | 33.168 | 202 | 113 | 8 | 471 | 663 | 329 | 517 | 3.46e-16 | 82.8 |
MS.gene75659.t1 | MTR_3g088870 | 36.943 | 157 | 82 | 5 | 454 | 605 | 328 | 472 | 1.04e-15 | 81.3 |
MS.gene75659.t1 | MTR_4g057730 | 41.489 | 94 | 53 | 1 | 472 | 563 | 332 | 425 | 1.25e-15 | 80.5 |
MS.gene75659.t1 | MTR_4g057730 | 24.576 | 236 | 152 | 7 | 86 | 318 | 35 | 247 | 5.15e-11 | 65.9 |
MS.gene75659.t1 | MTR_5g027500 | 35.616 | 146 | 78 | 5 | 463 | 604 | 348 | 481 | 1.39e-15 | 80.9 |
MS.gene75659.t1 | MTR_3g088880 | 35.000 | 160 | 79 | 5 | 455 | 605 | 327 | 470 | 2.99e-15 | 79.7 |
MS.gene75659.t1 | MTR_2g095510 | 39.785 | 93 | 54 | 1 | 473 | 563 | 330 | 422 | 3.93e-15 | 79.0 |
MS.gene75659.t1 | MTR_2g095510 | 26.724 | 232 | 137 | 8 | 93 | 319 | 42 | 245 | 3.90e-11 | 66.2 |
MS.gene75659.t1 | MTR_5g027480 | 29.907 | 214 | 133 | 5 | 421 | 631 | 296 | 495 | 7.39e-15 | 78.6 |
MS.gene75659.t1 | MTR_4g077900 | 28.571 | 238 | 132 | 6 | 472 | 706 | 268 | 470 | 8.21e-15 | 78.2 |
MS.gene75659.t1 | MTR_1569s0010 | 31.429 | 175 | 99 | 6 | 454 | 620 | 303 | 464 | 4.57e-13 | 72.8 |
MS.gene75659.t1 | MTR_1g063120 | 30.625 | 160 | 96 | 3 | 476 | 631 | 344 | 492 | 9.35e-13 | 72.0 |
MS.gene75659.t1 | MTR_1g063110 | 29.348 | 184 | 111 | 4 | 456 | 631 | 316 | 488 | 1.92e-12 | 70.9 |
MS.gene75659.t1 | MTR_1g090737 | 26.877 | 253 | 134 | 6 | 472 | 714 | 355 | 566 | 4.17e-12 | 69.7 |
MS.gene75659.t1 | MTR_4g128337 | 28.788 | 198 | 114 | 4 | 474 | 667 | 338 | 512 | 6.29e-12 | 69.3 |
MS.gene75659.t1 | MTR_1g073180 | 34.177 | 158 | 86 | 6 | 476 | 629 | 351 | 494 | 1.24e-11 | 68.2 |
MS.gene75659.t1 | MTR_1g073180 | 37.313 | 134 | 66 | 6 | 476 | 605 | 329 | 448 | 1.72e-11 | 67.8 |
MS.gene75659.t1 | MTR_4g005750 | 27.037 | 270 | 157 | 7 | 454 | 716 | 308 | 544 | 3.76e-11 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75659.t1 | AT3G23790 | 69.208 | 682 | 205 | 3 | 42 | 719 | 42 | 722 | 0.0 | 1014 |
MS.gene75659.t1 | AT4G14070 | 66.761 | 710 | 218 | 5 | 16 | 718 | 28 | 726 | 0.0 | 997 |
MS.gene75659.t1 | AT5G27600 | 28.414 | 637 | 366 | 17 | 106 | 718 | 117 | 687 | 3.36e-55 | 201 |
MS.gene75659.t1 | AT1G49430 | 29.147 | 645 | 364 | 23 | 104 | 718 | 76 | 657 | 3.33e-54 | 198 |
MS.gene75659.t1 | AT3G05970 | 27.707 | 628 | 380 | 15 | 108 | 719 | 119 | 688 | 5.46e-51 | 189 |
MS.gene75659.t1 | AT2G47240 | 26.331 | 676 | 412 | 22 | 70 | 719 | 38 | 653 | 2.35e-50 | 187 |
MS.gene75659.t1 | AT2G47240 | 26.331 | 676 | 412 | 22 | 70 | 719 | 38 | 653 | 2.35e-50 | 187 |
MS.gene75659.t1 | AT2G47240 | 26.331 | 676 | 412 | 22 | 70 | 719 | 38 | 653 | 2.35e-50 | 187 |
MS.gene75659.t1 | AT2G47240 | 26.398 | 644 | 397 | 20 | 97 | 719 | 7 | 594 | 2.63e-49 | 183 |
MS.gene75659.t1 | AT4G23850 | 25.719 | 661 | 415 | 18 | 82 | 719 | 49 | 656 | 7.13e-47 | 177 |
MS.gene75659.t1 | AT1G64400 | 25.074 | 674 | 417 | 19 | 75 | 719 | 42 | 656 | 2.57e-45 | 172 |
MS.gene75659.t1 | AT4G11030 | 25.564 | 665 | 411 | 20 | 82 | 719 | 49 | 656 | 1.36e-44 | 170 |
MS.gene75659.t1 | AT1G77590 | 26.275 | 647 | 378 | 23 | 108 | 718 | 107 | 690 | 4.89e-44 | 169 |
MS.gene75659.t1 | AT2G04350 | 26.000 | 650 | 380 | 26 | 109 | 718 | 131 | 719 | 5.85e-39 | 154 |
MS.gene75659.t1 | AT2G04350 | 26.000 | 650 | 380 | 26 | 109 | 718 | 131 | 719 | 5.85e-39 | 154 |
MS.gene75659.t1 | AT1G49430 | 29.228 | 479 | 264 | 17 | 104 | 559 | 76 | 502 | 4.81e-38 | 149 |
MS.gene75659.t1 | AT1G77590 | 27.011 | 522 | 294 | 21 | 229 | 718 | 78 | 544 | 7.74e-35 | 140 |
MS.gene75659.t1 | AT1G20510 | 25.091 | 550 | 295 | 18 | 87 | 627 | 39 | 480 | 8.69e-26 | 112 |
MS.gene75659.t1 | AT1G20510 | 25.277 | 542 | 288 | 18 | 87 | 619 | 39 | 472 | 1.29e-25 | 111 |
MS.gene75659.t1 | AT1G20510 | 25.257 | 487 | 258 | 16 | 87 | 564 | 39 | 428 | 1.88e-24 | 107 |
MS.gene75659.t1 | AT3G21230 | 31.111 | 225 | 120 | 6 | 453 | 668 | 335 | 533 | 3.53e-18 | 89.0 |
MS.gene75659.t1 | AT3G21230 | 31.364 | 220 | 116 | 6 | 453 | 663 | 335 | 528 | 1.75e-17 | 87.0 |
MS.gene75659.t1 | AT3G21240 | 25.806 | 248 | 145 | 5 | 474 | 716 | 343 | 556 | 4.10e-17 | 85.9 |
MS.gene75659.t1 | AT4G05160 | 29.851 | 201 | 116 | 4 | 472 | 670 | 334 | 511 | 5.22e-17 | 85.5 |
MS.gene75659.t1 | AT4G05160 | 27.386 | 241 | 148 | 10 | 83 | 319 | 33 | 250 | 4.78e-15 | 79.3 |
MS.gene75659.t1 | AT3G21230 | 33.333 | 177 | 95 | 5 | 453 | 620 | 335 | 497 | 1.16e-16 | 84.0 |
MS.gene75659.t1 | AT3G21240 | 32.237 | 152 | 87 | 3 | 474 | 620 | 343 | 483 | 8.71e-16 | 81.3 |
MS.gene75659.t1 | AT3G21240 | 32.237 | 152 | 87 | 3 | 474 | 620 | 343 | 483 | 8.71e-16 | 81.3 |
MS.gene75659.t1 | AT5G63380 | 40.708 | 113 | 63 | 3 | 455 | 563 | 329 | 441 | 2.11e-15 | 80.5 |
MS.gene75659.t1 | AT1G20480 | 33.333 | 171 | 99 | 5 | 453 | 619 | 334 | 493 | 2.51e-15 | 80.1 |
MS.gene75659.t1 | AT1G65060 | 30.288 | 208 | 114 | 6 | 465 | 667 | 347 | 528 | 1.24e-14 | 77.8 |
MS.gene75659.t1 | AT4G19010 | 31.183 | 186 | 109 | 5 | 472 | 650 | 352 | 525 | 9.01e-14 | 75.1 |
MS.gene75659.t1 | AT1G51680 | 29.208 | 202 | 115 | 4 | 474 | 670 | 350 | 528 | 2.20e-13 | 73.9 |
MS.gene75659.t1 | AT1G51680 | 29.648 | 199 | 112 | 4 | 474 | 667 | 350 | 525 | 5.93e-13 | 72.4 |
MS.gene75659.t1 | AT1G51680 | 40.000 | 90 | 49 | 1 | 474 | 558 | 350 | 439 | 2.07e-12 | 70.5 |
MS.gene75659.t1 | AT3G48990 | 25.591 | 254 | 148 | 11 | 460 | 710 | 294 | 509 | 3.46e-12 | 70.1 |
MS.gene75659.t1 | AT1G20500 | 27.556 | 225 | 126 | 7 | 455 | 670 | 321 | 517 | 1.38e-11 | 68.2 |
MS.gene75659.t1 | AT1G66120 | 32.558 | 172 | 80 | 7 | 453 | 605 | 306 | 460 | 1.61e-11 | 68.2 |
MS.gene75659.t1 | AT1G65060 | 38.095 | 105 | 57 | 2 | 465 | 564 | 347 | 448 | 3.22e-11 | 67.0 |
MS.gene75659.t1 | AT1G65890 | 29.577 | 213 | 120 | 9 | 453 | 647 | 306 | 506 | 4.78e-11 | 66.6 |
MS.gene75659.t1 | AT1G21530 | 25.000 | 220 | 125 | 8 | 431 | 627 | 275 | 477 | 6.06e-11 | 66.2 |
MS.gene75659.t1 | AT1G21530 | 26.154 | 195 | 107 | 7 | 453 | 627 | 302 | 479 | 7.82e-11 | 65.9 |
Find 177 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAGAAAGTTCATTGCTTTC+TGG | 0.138810 | 3.3:-70730691 | MS.gene75659:CDS |
GCAATCCGATTAAACATTTC+TGG | 0.141834 | 3.3:+70728727 | None:intergenic |
ACTTGTATAGATTCTCTATT+TGG | 0.203803 | 3.3:+70719676 | None:intergenic |
TCCGAGTTTCCATTTCAAAT+TGG | 0.232105 | 3.3:-70719872 | MS.gene75659:CDS |
TAACAAAGAAGAAGTCTTAA+AGG | 0.239879 | 3.3:-70720223 | MS.gene75659:CDS |
AGTAAAATCCATTCAGCTAT+TGG | 0.257091 | 3.3:-70726601 | MS.gene75659:CDS |
AGCAATGAACTTTCTAATAA+AGG | 0.267838 | 3.3:+70730697 | None:intergenic |
CTATAATGACAGATTGATAA+TGG | 0.276137 | 3.3:-70719756 | MS.gene75659:intron |
TTTAAGACTTCTTCTTTGTT+AGG | 0.291375 | 3.3:+70720225 | None:intergenic |
AGTTCTTCCACCTGGTTATA+AGG | 0.296596 | 3.3:-70721358 | MS.gene75659:CDS |
GGAAGGCGACTTCTGGTTCT+TGG | 0.307054 | 3.3:+70726714 | None:intergenic |
CTTAATCATATGCAGGCTAT+TGG | 0.309123 | 3.3:-70722183 | MS.gene75659:intron |
CTGACTGAGATCTGAACTAT+TGG | 0.311818 | 3.3:+70720173 | None:intergenic |
GCAATGAACTTTCTAATAAA+GGG | 0.318012 | 3.3:+70730698 | None:intergenic |
GTCTAATATATGATGAATTA+AGG | 0.331115 | 3.3:-70720137 | MS.gene75659:CDS |
GCGGAGCAATCAATGTTGTT+AGG | 0.340790 | 3.3:-70729636 | MS.gene75659:CDS |
ATTCACGGAAATCAGGCATT+TGG | 0.343426 | 3.3:-70728602 | MS.gene75659:CDS |
GCTGAGGGCTTGAGGGTCAT+TGG | 0.344402 | 3.3:-70730358 | MS.gene75659:CDS |
CCGAGTTTCCATTTCAAATT+GGG | 0.345381 | 3.3:-70719871 | MS.gene75659:CDS |
TTAGTTGGAGGATGCAATAT+TGG | 0.348022 | 3.3:-70730386 | MS.gene75659:intron |
GGAAAGCAGTTCCTGACATT+TGG | 0.350543 | 3.3:-70730642 | MS.gene75659:CDS |
TTCTTTGCCAGCATATGAAT+TGG | 0.351381 | 3.3:+70726634 | None:intergenic |
AGAGATAGGAAGGCGACTTC+TGG | 0.367552 | 3.3:+70726707 | None:intergenic |
TGGGTTAGCATAACACCTTT+TGG | 0.371622 | 3.3:+70728077 | None:intergenic |
GTTCTTCCACCTGGTTATAA+GGG | 0.371749 | 3.3:-70721357 | MS.gene75659:CDS |
GTGACATTGCAGAACGGATA+TGG | 0.372511 | 3.3:-70722159 | MS.gene75659:CDS |
AGAAGCATAGTTGTTGCATT+TGG | 0.377539 | 3.3:+70731182 | None:intergenic |
ATACATCAAATTGTTGTCAT+TGG | 0.380948 | 3.3:-70720389 | MS.gene75659:CDS |
TGCAAAAGCGTTTGATTTGA+AGG | 0.387889 | 3.3:-70728707 | MS.gene75659:CDS |
TTCAGCTATTGGATTCTCTA+AGG | 0.388566 | 3.3:-70726590 | MS.gene75659:intron |
GAAGTTGTAGATTCTGAAAC+TGG | 0.391248 | 3.3:-70721384 | MS.gene75659:CDS |
CGGAGCAATCAATGTTGTTA+GGG | 0.402429 | 3.3:-70729635 | MS.gene75659:CDS |
AGGATTGGCCCAATTTGAAA+TGG | 0.403335 | 3.3:+70719863 | None:intergenic |
ATTGCTGCCCACCATTCATC+TGG | 0.403430 | 3.3:-70720956 | MS.gene75659:CDS |
TTCACGGAAATCAGGCATTT+GGG | 0.404346 | 3.3:-70728601 | MS.gene75659:CDS |
GACACCATTGTGCTTTCATC+AGG | 0.404554 | 3.3:-70720884 | MS.gene75659:intron |
ACATTCATCAGGGTCAGCTT+AGG | 0.412090 | 3.3:-70727249 | MS.gene75659:CDS |
TTCTCACAGTTGTATATACT+TGG | 0.415604 | 3.3:+70727593 | None:intergenic |
GTTGAAGGAGGATCATGATA+TGG | 0.415929 | 3.3:+70730574 | None:intergenic |
TGGTGAAGTTGTGGCGAGGA+AGG | 0.415951 | 3.3:+70731127 | None:intergenic |
ATAATCCAGAAATGTTTAAT+CGG | 0.418782 | 3.3:-70728732 | MS.gene75659:CDS |
TCAAACTCTGTATGCTTAAG+TGG | 0.419902 | 3.3:+70721405 | None:intergenic |
TTGTTGCACTGACATTCATC+AGG | 0.421187 | 3.3:-70727260 | MS.gene75659:CDS |
CCTTGCTTCCTTCATTGACC+AGG | 0.421862 | 3.3:+70728641 | None:intergenic |
ACGAGTTCGAGAAACGTTGA+TGG | 0.422420 | 3.3:+70731101 | None:intergenic |
TAGTATCCCTTCATCAATTG+TGG | 0.424278 | 3.3:+70721315 | None:intergenic |
ATTATTTCCAATTCATATGC+TGG | 0.428706 | 3.3:-70726641 | MS.gene75659:CDS |
ACATTGTACCTGCTGAAGTT+GGG | 0.429154 | 3.3:-70727696 | MS.gene75659:CDS |
CAGGGTCAGCTTAGGGTACA+TGG | 0.430058 | 3.3:-70727241 | MS.gene75659:CDS |
AGGAAGAGAATAGGAGAAGA+AGG | 0.434705 | 3.3:+70731155 | None:intergenic |
AGAAGGTGAAAATGTTGAAC+CGG | 0.436115 | 3.3:-70720447 | MS.gene75659:intron |
TTTCTCTATTACAGATAAGA+AGG | 0.436986 | 3.3:-70730726 | MS.gene75659:intron |
GACATTGTACCTGCTGAAGT+TGG | 0.438507 | 3.3:-70727697 | MS.gene75659:CDS |
AGTCGTCGAGCAGCAATAAC+TGG | 0.440066 | 3.3:+70722120 | None:intergenic |
TAGTTACCTTGGATTGAGAT+TGG | 0.441636 | 3.3:+70731061 | None:intergenic |
TTCTAAGTATGCTGCCTCCT+TGG | 0.442134 | 3.3:-70727666 | MS.gene75659:CDS |
AAGGAAGAGAGGAAGAGAAT+AGG | 0.442652 | 3.3:+70731146 | None:intergenic |
AGAACTTCTGCTGACAAGTA+TGG | 0.446686 | 3.3:-70730619 | MS.gene75659:CDS |
ATCTCTATGCAATGTTGGAT+TGG | 0.451464 | 3.3:-70726690 | MS.gene75659:CDS |
AGGGATGGCTGGCTGAATAC+TGG | 0.452224 | 3.3:-70720992 | MS.gene75659:CDS |
TCAATGTTGTTAGGGGTTCA+AGG | 0.456420 | 3.3:-70729627 | MS.gene75659:CDS |
TTCAACTATGACCTACAAAC+AGG | 0.457091 | 3.3:-70730557 | MS.gene75659:intron |
GGACTTCGCTGAGGGCTTGA+GGG | 0.457558 | 3.3:-70730365 | MS.gene75659:CDS |
TATAATGACAGATTGATAAT+GGG | 0.458531 | 3.3:-70719755 | MS.gene75659:intron |
TCTCGTAAATGACCCCTTCA+CGG | 0.460841 | 3.3:-70719840 | MS.gene75659:intron |
TACAACTGTGAGAAACTTGA+AGG | 0.461405 | 3.3:-70727584 | MS.gene75659:intron |
CCTGTCTATGACCTGATTTG+TGG | 0.462840 | 3.3:+70721012 | None:intergenic |
GGTGGTGTGATTGTTGTTGA+AGG | 0.468210 | 3.3:-70720917 | MS.gene75659:CDS |
TTGCTGATAATTCTTGTCGC+TGG | 0.471139 | 3.3:-70730306 | MS.gene75659:CDS |
TGGACTTCGCTGAGGGCTTG+AGG | 0.472419 | 3.3:-70730366 | MS.gene75659:CDS |
CATTCATCAGGGTCAGCTTA+GGG | 0.477338 | 3.3:-70727248 | MS.gene75659:CDS |
TCATTGCTTTCTGGTAATGA+TGG | 0.480763 | 3.3:-70730682 | MS.gene75659:CDS |
AAAAGCGCAATCTTCTCATC+GGG | 0.482730 | 3.3:+70730328 | None:intergenic |
TTGAAGGTTATCGGATCTGT+CGG | 0.484073 | 3.3:-70721432 | MS.gene75659:intron |
TGGTAATGATGGCGTCGTCT+CGG | 0.487924 | 3.3:-70730671 | MS.gene75659:CDS |
GTATACACAAGTGGTACTAC+TGG | 0.489782 | 3.3:-70728104 | MS.gene75659:CDS |
TAGTTTATGAATCGTTGTAC+AGG | 0.490155 | 3.3:-70727420 | MS.gene75659:intron |
ATCCAACATTGCATAGAGAT+AGG | 0.490564 | 3.3:+70726693 | None:intergenic |
CCCAATTTGAAATGGAAACT+CGG | 0.491508 | 3.3:+70719871 | None:intergenic |
GAATGCTTCAGCCACAAATC+AGG | 0.492042 | 3.3:-70721023 | MS.gene75659:CDS |
TGTTTGTAGGTCATAGTTGA+AGG | 0.492887 | 3.3:+70730559 | None:intergenic |
ATGCAATGTTGGATTGGCTA+GGG | 0.497971 | 3.3:-70726684 | MS.gene75659:CDS |
TTGTGGCGAGGAAGGAAGAG+AGG | 0.499008 | 3.3:+70731135 | None:intergenic |
TCGAGAAACGTTGATGGAAG+TGG | 0.499348 | 3.3:+70731107 | None:intergenic |
TGAAGGTTATCGGATCTGTC+GGG | 0.501406 | 3.3:-70721431 | MS.gene75659:intron |
CCACAAATCAGGTCATAGAC+AGG | 0.501447 | 3.3:-70721012 | MS.gene75659:CDS |
TCAAATTGTTGTCATTGGCC+AGG | 0.503478 | 3.3:-70720384 | MS.gene75659:intron |
AGGTCATAGACAGGGATGGC+TGG | 0.504712 | 3.3:-70721003 | MS.gene75659:CDS |
GCAGAAGTTCTCCAAATGTC+AGG | 0.506767 | 3.3:+70730631 | None:intergenic |
TTCCTATCTCTATGCAATGT+TGG | 0.513011 | 3.3:-70726695 | MS.gene75659:CDS |
ATTTGGGAAGAGAGAGCCGC+AGG | 0.516800 | 3.3:-70728585 | MS.gene75659:CDS |
CTGTTAAGTCTAACCGTGAA+GGG | 0.517070 | 3.3:+70719827 | None:intergenic |
GCAGCCTCTTCAAGTTCTCC+CGG | 0.518057 | 3.3:+70720428 | None:intergenic |
AATCTATCCCCAACTTCAGC+AGG | 0.518743 | 3.3:+70727688 | None:intergenic |
TAATTCATCATATATTAGAC+TGG | 0.519309 | 3.3:+70720140 | None:intergenic |
GCTTACCTTCTCACGTCGAT+AGG | 0.519940 | 3.3:-70722282 | MS.gene75659:CDS |
CAGGGGCCCACAATTGATGA+AGG | 0.520046 | 3.3:-70721322 | MS.gene75659:CDS |
CGCTGGCTAGTGGCAGATCA+AGG | 0.520206 | 3.3:-70730289 | MS.gene75659:intron |
GTTGTTGCATTTGGAAGTGA+AGG | 0.522885 | 3.3:+70731191 | None:intergenic |
TACGACTCCGTCCAGATGAA+TGG | 0.523272 | 3.3:+70720945 | None:intergenic |
AGCTTGTAGAAATCTGCCTC+TGG | 0.523802 | 3.3:+70727298 | None:intergenic |
TTCAAAATTCCCTTATAACC+AGG | 0.523917 | 3.3:+70721348 | None:intergenic |
GGGTCATTTACGAGAAGGAT+TGG | 0.527196 | 3.3:+70719848 | None:intergenic |
AGTATCCCTTCATCAATTGT+GGG | 0.531030 | 3.3:+70721316 | None:intergenic |
AAATCATGCCTGGTCAATGA+AGG | 0.531261 | 3.3:-70728649 | MS.gene75659:CDS |
CAGGTGACATACTAGCATCA+TGG | 0.534753 | 3.3:+70728551 | None:intergenic |
GAGATTTGTTATTCTGCTGT+GGG | 0.541048 | 3.3:-70728677 | MS.gene75659:CDS |
TAGAGTTATGGCTCAATACA+AGG | 0.542612 | 3.3:-70719700 | MS.gene75659:CDS |
ATATAGGATAAGCGACGTCT+AGG | 0.542920 | 3.3:-70720261 | MS.gene75659:intron |
ATGGCGTCGTCTCGGATGAG+TGG | 0.548512 | 3.3:-70730663 | MS.gene75659:CDS |
AGAAGTCTTAAAGGCAGCAA+GGG | 0.548818 | 3.3:-70720214 | MS.gene75659:CDS |
TCTCTGCAGGCTGGAATAAG+TGG | 0.549270 | 3.3:-70722313 | MS.gene75659:intron |
GTGCAACAAGCTTTCTAACA+AGG | 0.549469 | 3.3:+70727274 | None:intergenic |
GGTACTACTGGAAATCCAAA+AGG | 0.550334 | 3.3:-70728092 | MS.gene75659:CDS |
TATGCAATGTTGGATTGGCT+AGG | 0.550689 | 3.3:-70726685 | MS.gene75659:CDS |
TAGAGAATCCAATAGCTGAA+TGG | 0.551968 | 3.3:+70726593 | None:intergenic |
TCCTCTGCAGTGGGATCCAG+AGG | 0.552637 | 3.3:-70727314 | MS.gene75659:intron |
TACAACGATTCATAAACTAA+AGG | 0.552688 | 3.3:+70727424 | None:intergenic |
TGAGATTTGTTATTCTGCTG+TGG | 0.553776 | 3.3:-70728678 | MS.gene75659:CDS |
CAATAGTTCAGATCTCAGTC+AGG | 0.554943 | 3.3:-70720172 | MS.gene75659:CDS |
CATTGTACCTGCTGAAGTTG+GGG | 0.556208 | 3.3:-70727695 | MS.gene75659:CDS |
TGAATACTGGTGACATAGGT+TGG | 0.556669 | 3.3:-70720979 | MS.gene75659:CDS |
AGGTGACATACTAGCATCAT+GGG | 0.556858 | 3.3:+70728552 | None:intergenic |
AAATATACAATCACTCTGAA+AGG | 0.557239 | 3.3:-70729582 | MS.gene75659:intron |
CAGAAATCAAGTAATGCGGC+TGG | 0.566930 | 3.3:+70727449 | None:intergenic |
AAGAAGTCTTAAAGGCAGCA+AGG | 0.569628 | 3.3:-70720215 | MS.gene75659:CDS |
AACATTGCATAGAGATAGGA+AGG | 0.573319 | 3.3:+70726697 | None:intergenic |
AATTCGAAGAGATAGAGTTA+TGG | 0.573996 | 3.3:-70719712 | MS.gene75659:CDS |
GCAATATTGGACTTCGCTGA+GGG | 0.574555 | 3.3:-70730373 | MS.gene75659:CDS |
ATTTAGCGTTGCACTAGCTG+TGG | 0.582780 | 3.3:-70728755 | MS.gene75659:intron |
TAATTCTTGTCGCTGGCTAG+TGG | 0.583822 | 3.3:-70730299 | MS.gene75659:CDS |
TTGTTGCATTTGGAAGTGAA+GGG | 0.591578 | 3.3:+70731192 | None:intergenic |
GCTACTCTTGTATACACAAG+TGG | 0.593098 | 3.3:-70728113 | MS.gene75659:CDS |
TGCAATATTGGACTTCGCTG+AGG | 0.593475 | 3.3:-70730374 | MS.gene75659:CDS |
CAGGCTGGAATAAGTGGTGG+CGG | 0.593927 | 3.3:-70722307 | MS.gene75659:CDS |
TCTGTTAAGTCTAACCGTGA+AGG | 0.594002 | 3.3:+70719826 | None:intergenic |
ATGAATTGGAAATAATATTG+TGG | 0.597499 | 3.3:+70726648 | None:intergenic |
TGAAGGGGTCATTTACGAGA+AGG | 0.598723 | 3.3:+70719843 | None:intergenic |
CCTGGTCAATGAAGGAAGCA+AGG | 0.601404 | 3.3:-70728641 | MS.gene75659:CDS |
CTCTTGCCAATCTCAATCCA+AGG | 0.603249 | 3.3:-70731067 | MS.gene75659:intron |
TGGCTGAATACTGGTGACAT+AGG | 0.606118 | 3.3:-70720983 | MS.gene75659:CDS |
GCTCTTTCATATGCATGCCA+AGG | 0.609186 | 3.3:+70727649 | None:intergenic |
TCTGGACGGAGTCGTAATTG+TGG | 0.609595 | 3.3:-70720938 | MS.gene75659:CDS |
CAATGAACTTTCTAATAAAG+GGG | 0.611210 | 3.3:+70730699 | None:intergenic |
CACAAATCAGGTCATAGACA+GGG | 0.614296 | 3.3:-70721011 | MS.gene75659:CDS |
GACTCCGTCCAGATGAATGG+TGG | 0.614863 | 3.3:+70720948 | None:intergenic |
ACTGGTGAAGTTCTTCCACC+TGG | 0.616933 | 3.3:-70721366 | MS.gene75659:CDS |
CTGCAGGCTGGAATAAGTGG+TGG | 0.625725 | 3.3:-70722310 | MS.gene75659:intron |
TGATGGAAGTGGTGAAGTTG+TGG | 0.625848 | 3.3:+70731118 | None:intergenic |
CTGCCCACCATTCATCTGGA+CGG | 0.628090 | 3.3:-70720952 | MS.gene75659:CDS |
CTTTCATATGCATGCCAAGG+AGG | 0.633043 | 3.3:+70727652 | None:intergenic |
TGCAATGTTGGATTGGCTAG+GGG | 0.633153 | 3.3:-70726683 | MS.gene75659:CDS |
ATTGATGAAGGGATACTACA+AGG | 0.633281 | 3.3:-70721310 | MS.gene75659:intron |
AGTCTAGGTATGATGGCAAG+CGG | 0.634363 | 3.3:-70729655 | MS.gene75659:intron |
TGCAACAAGCTTTCTAACAA+GGG | 0.635724 | 3.3:+70727275 | None:intergenic |
GAAGGTGAAAATGTTGAACC+GGG | 0.638729 | 3.3:-70720446 | MS.gene75659:intron |
AGGGGCCCACAATTGATGAA+GGG | 0.640460 | 3.3:-70721321 | MS.gene75659:CDS |
TGTTGCACTGACATTCATCA+GGG | 0.641553 | 3.3:-70727259 | MS.gene75659:CDS |
GGAATGTAAGCGGATTTATG+AGG | 0.642348 | 3.3:-70727220 | MS.gene75659:intron |
AACTTGAAGAGGCTGCGATG+AGG | 0.645675 | 3.3:-70720421 | MS.gene75659:CDS |
ACTCCGTCCAGATGAATGGT+GGG | 0.647112 | 3.3:+70720949 | None:intergenic |
TTGTAGGTCATAGTTGAAGG+AGG | 0.649181 | 3.3:+70730562 | None:intergenic |
GCACAATGGTGTCTTTAGCA+CGG | 0.650126 | 3.3:+70720894 | None:intergenic |
AAAATTCCCTTATAACCAGG+TGG | 0.650944 | 3.3:+70721351 | None:intergenic |
GGAGCAATCAATGTTGTTAG+GGG | 0.653532 | 3.3:-70729634 | MS.gene75659:CDS |
GGAACAGAAATCAAGTAATG+CGG | 0.657675 | 3.3:+70727445 | None:intergenic |
TAGGGTACATGGAATGTAAG+CGG | 0.660288 | 3.3:-70727230 | MS.gene75659:CDS |
CATGGGATTCAAACAACCTG+CGG | 0.661457 | 3.3:+70728569 | None:intergenic |
TGTTAAGTCTAACCGTGAAG+GGG | 0.661537 | 3.3:+70719828 | None:intergenic |
AATCAGGTCATAGACAGGGA+TGG | 0.665987 | 3.3:-70721007 | MS.gene75659:CDS |
ATTGGTGTGACATTGCAGAA+CGG | 0.669528 | 3.3:-70722165 | MS.gene75659:CDS |
TATATGATGAATTAAGGACC+TGG | 0.671281 | 3.3:-70720131 | MS.gene75659:intron |
GGACGGAGTCGTAATTGTGG+TGG | 0.682595 | 3.3:-70720935 | MS.gene75659:CDS |
TGAACCGGGAGAACTTGAAG+AGG | 0.683069 | 3.3:-70720432 | MS.gene75659:CDS |
GAAGTGGTGAAGTTGTGGCG+AGG | 0.713962 | 3.3:+70731123 | None:intergenic |
AGATTTGTTATTCTGCTGTG+GGG | 0.716210 | 3.3:-70728676 | MS.gene75659:CDS |
TATACCTGATGAAAGCACAA+TGG | 0.771476 | 3.3:+70720880 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 70719674 | 70731226 | 70719674 | ID=MS.gene75659 |
chr3.3 | mRNA | 70719674 | 70731226 | 70719674 | ID=MS.gene75659.t1;Parent=MS.gene75659 |
chr3.3 | exon | 70731068 | 70731226 | 70731068 | ID=MS.gene75659.t1.exon1;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70731068 | 70731226 | 70731068 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70730558 | 70730734 | 70730558 | ID=MS.gene75659.t1.exon2;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70730558 | 70730734 | 70730558 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70730290 | 70730404 | 70730290 | ID=MS.gene75659.t1.exon3;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70730290 | 70730404 | 70730290 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70729583 | 70729670 | 70729583 | ID=MS.gene75659.t1.exon4;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70729583 | 70729670 | 70729583 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70728563 | 70728771 | 70728563 | ID=MS.gene75659.t1.exon5;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70728563 | 70728771 | 70728563 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70728058 | 70728176 | 70728058 | ID=MS.gene75659.t1.exon6;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70728058 | 70728176 | 70728058 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70727585 | 70727734 | 70727585 | ID=MS.gene75659.t1.exon7;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70727585 | 70727734 | 70727585 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70727421 | 70727488 | 70727421 | ID=MS.gene75659.t1.exon8;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70727421 | 70727488 | 70727421 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70727221 | 70727326 | 70727221 | ID=MS.gene75659.t1.exon9;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70727221 | 70727326 | 70727221 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70726591 | 70726749 | 70726591 | ID=MS.gene75659.t1.exon10;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70726591 | 70726749 | 70726591 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70722273 | 70722326 | 70722273 | ID=MS.gene75659.t1.exon11;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70722273 | 70722326 | 70722273 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70722110 | 70722190 | 70722110 | ID=MS.gene75659.t1.exon12;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70722110 | 70722190 | 70722110 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70721311 | 70721448 | 70721311 | ID=MS.gene75659.t1.exon13;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70721311 | 70721448 | 70721311 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70720885 | 70721044 | 70720885 | ID=MS.gene75659.t1.exon14;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70720885 | 70721044 | 70720885 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70720385 | 70720464 | 70720385 | ID=MS.gene75659.t1.exon15;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70720385 | 70720464 | 70720385 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70720132 | 70720277 | 70720132 | ID=MS.gene75659.t1.exon16;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70720132 | 70720277 | 70720132 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70719841 | 70719898 | 70719841 | ID=MS.gene75659.t1.exon17;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70719841 | 70719898 | 70719841 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
chr3.3 | exon | 70719674 | 70719766 | 70719674 | ID=MS.gene75659.t1.exon18;Parent=MS.gene75659.t1 |
chr3.3 | CDS | 70719674 | 70719766 | 70719674 | ID=cds.MS.gene75659.t1;Parent=MS.gene75659.t1 |
Gene Sequence |
Protein sequence |