Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09265.t1 | XP_003629618.2 | 95.4 | 724 | 30 | 2 | 1 | 721 | 1 | 724 | 0.00E+00 | 1341.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09265.t1 | Q9LK39 | 66.5 | 692 | 220 | 6 | 31 | 721 | 42 | 722 | 4.2e-271 | 935.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09265.t1 | G7LH35 | 95.4 | 724 | 30 | 2 | 1 | 721 | 1 | 724 | 0.0e+00 | 1341.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09265.t1 | MTR_8g083170 | 95.166 | 724 | 32 | 2 | 1 | 721 | 1 | 724 | 0.0 | 1398 |
MS.gene09265.t1 | MTR_3g084450 | 73.598 | 731 | 172 | 7 | 1 | 721 | 1 | 720 | 0.0 | 1088 |
MS.gene09265.t1 | MTR_3g084470 | 76.130 | 708 | 147 | 8 | 14 | 721 | 30 | 715 | 0.0 | 1083 |
MS.gene09265.t1 | MTR_3g084450 | 79.070 | 473 | 97 | 2 | 250 | 721 | 41 | 512 | 0.0 | 775 |
MS.gene09265.t1 | MTR_7g109830 | 26.657 | 679 | 408 | 21 | 71 | 721 | 37 | 653 | 2.34e-50 | 187 |
MS.gene09265.t1 | MTR_1g086600 | 26.370 | 675 | 411 | 20 | 74 | 721 | 62 | 677 | 9.59e-50 | 186 |
MS.gene09265.t1 | MTR_1g104810 | 25.437 | 629 | 395 | 15 | 106 | 720 | 49 | 617 | 5.82e-49 | 182 |
MS.gene09265.t1 | MTR_1g104810 | 25.437 | 629 | 395 | 15 | 106 | 720 | 116 | 684 | 1.60e-48 | 182 |
MS.gene09265.t1 | MTR_5g009360 | 25.599 | 668 | 411 | 19 | 80 | 721 | 48 | 655 | 1.00e-43 | 168 |
MS.gene09265.t1 | MTR_5g009350 | 25.641 | 663 | 417 | 17 | 80 | 721 | 48 | 655 | 1.28e-43 | 167 |
MS.gene09265.t1 | MTR_5g009350 | 25.344 | 655 | 413 | 17 | 80 | 713 | 48 | 647 | 8.69e-41 | 159 |
MS.gene09265.t1 | MTR_1g034360 | 25.075 | 670 | 411 | 24 | 80 | 721 | 48 | 654 | 1.97e-40 | 158 |
MS.gene09265.t1 | MTR_1g030290 | 25.988 | 658 | 373 | 22 | 106 | 720 | 108 | 694 | 8.09e-38 | 150 |
MS.gene09265.t1 | MTR_5g009360 | 26.565 | 527 | 312 | 15 | 216 | 721 | 57 | 529 | 1.28e-37 | 148 |
MS.gene09265.t1 | MTR_8g099420 | 23.838 | 667 | 424 | 21 | 80 | 721 | 49 | 656 | 2.40e-37 | 149 |
MS.gene09265.t1 | MTR_4g068670 | 25.186 | 671 | 408 | 26 | 80 | 721 | 47 | 652 | 5.64e-37 | 147 |
MS.gene09265.t1 | MTR_3g082660 | 24.572 | 643 | 402 | 19 | 107 | 720 | 138 | 726 | 1.13e-36 | 147 |
MS.gene09265.t1 | MTR_5g009350 | 25.965 | 570 | 350 | 16 | 80 | 632 | 48 | 562 | 1.45e-36 | 145 |
MS.gene09265.t1 | MTR_3g087980 | 25.688 | 654 | 380 | 22 | 106 | 720 | 106 | 692 | 1.03e-35 | 144 |
MS.gene09265.t1 | MTR_5g009350 | 26.335 | 543 | 328 | 16 | 80 | 605 | 48 | 535 | 1.16e-35 | 143 |
MS.gene09265.t1 | MTR_3g460770 | 27.152 | 604 | 298 | 24 | 78 | 661 | 30 | 511 | 1.63e-28 | 121 |
MS.gene09265.t1 | MTR_1g026310 | 24.000 | 575 | 316 | 17 | 106 | 666 | 68 | 535 | 1.12e-24 | 109 |
MS.gene09265.t1 | MTR_4g057730 | 32.714 | 269 | 136 | 10 | 456 | 716 | 311 | 542 | 1.16e-21 | 99.8 |
MS.gene09265.t1 | MTR_4g057730 | 39.181 | 171 | 87 | 6 | 456 | 620 | 311 | 470 | 2.53e-21 | 98.2 |
MS.gene09265.t1 | MTR_1g073180 | 31.148 | 244 | 128 | 9 | 449 | 669 | 308 | 534 | 4.57e-20 | 94.7 |
MS.gene09265.t1 | MTR_2g095510 | 36.970 | 165 | 83 | 5 | 449 | 605 | 301 | 452 | 2.14e-18 | 89.7 |
MS.gene09265.t1 | MTR_4g057730 | 41.379 | 116 | 62 | 2 | 456 | 565 | 311 | 426 | 2.14e-18 | 89.0 |
MS.gene09265.t1 | MTR_1g073180 | 30.705 | 241 | 127 | 9 | 449 | 666 | 286 | 509 | 4.97e-18 | 88.6 |
MS.gene09265.t1 | MTR_2g105570 | 30.337 | 267 | 139 | 10 | 455 | 711 | 315 | 544 | 6.24e-18 | 88.2 |
MS.gene09265.t1 | MTR_1g063110 | 32.124 | 193 | 106 | 5 | 457 | 635 | 316 | 497 | 9.18e-18 | 87.8 |
MS.gene09265.t1 | MTR_4g077900 | 29.630 | 243 | 139 | 8 | 445 | 668 | 226 | 455 | 9.29e-18 | 87.4 |
MS.gene09265.t1 | MTR_5g027480 | 31.081 | 222 | 131 | 7 | 456 | 668 | 324 | 532 | 9.55e-18 | 87.8 |
MS.gene09265.t1 | MTR_5g027500 | 30.909 | 220 | 130 | 7 | 458 | 668 | 339 | 545 | 1.32e-17 | 87.4 |
MS.gene09265.t1 | MTR_3g088870 | 36.111 | 180 | 100 | 4 | 455 | 630 | 328 | 496 | 1.65e-17 | 87.0 |
MS.gene09265.t1 | MTR_2g095510 | 40.678 | 118 | 60 | 3 | 456 | 565 | 308 | 423 | 5.18e-17 | 84.7 |
MS.gene09265.t1 | MTR_1g063120 | 28.033 | 239 | 134 | 8 | 442 | 669 | 305 | 516 | 9.49e-17 | 84.7 |
MS.gene09265.t1 | MTR_3g088880 | 34.637 | 179 | 102 | 4 | 456 | 630 | 327 | 494 | 1.48e-16 | 84.0 |
MS.gene09265.t1 | MTR_5g007640 | 34.161 | 161 | 90 | 4 | 477 | 632 | 378 | 527 | 8.37e-16 | 81.6 |
MS.gene09265.t1 | MTR_1569s0010 | 35.227 | 176 | 91 | 8 | 455 | 621 | 303 | 464 | 4.79e-14 | 75.9 |
MS.gene09265.t1 | MTR_4g005750 | 28.102 | 274 | 150 | 9 | 455 | 718 | 308 | 544 | 1.19e-13 | 74.7 |
MS.gene09265.t1 | MTR_4g128337 | 36.090 | 133 | 70 | 4 | 477 | 605 | 340 | 461 | 1.13e-12 | 71.6 |
MS.gene09265.t1 | MTR_8g039720 | 32.402 | 179 | 106 | 4 | 454 | 628 | 332 | 499 | 1.15e-12 | 71.6 |
MS.gene09265.t1 | MTR_8g039720 | 24.286 | 280 | 185 | 6 | 85 | 357 | 46 | 305 | 9.20e-12 | 68.6 |
MS.gene09265.t1 | MTR_5g008820 | 30.622 | 209 | 119 | 6 | 434 | 628 | 279 | 475 | 2.45e-12 | 70.5 |
MS.gene09265.t1 | MTR_1g090737 | 31.746 | 189 | 97 | 6 | 456 | 630 | 334 | 504 | 3.74e-12 | 70.1 |
MS.gene09265.t1 | MTR_8g074040 | 32.804 | 189 | 101 | 8 | 454 | 628 | 345 | 521 | 4.03e-12 | 70.1 |
MS.gene09265.t1 | MTR_8g074040 | 32.804 | 189 | 101 | 8 | 454 | 628 | 227 | 403 | 4.38e-12 | 69.3 |
MS.gene09265.t1 | MTR_5g076220 | 30.729 | 192 | 101 | 6 | 454 | 628 | 305 | 481 | 1.44e-11 | 68.2 |
MS.gene09265.t1 | MTR_8g074120 | 29.730 | 185 | 104 | 7 | 452 | 622 | 254 | 426 | 6.42e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09265.t1 | AT3G23790 | 67.052 | 692 | 216 | 6 | 31 | 721 | 42 | 722 | 0.0 | 969 |
MS.gene09265.t1 | AT4G14070 | 66.377 | 690 | 209 | 6 | 31 | 720 | 60 | 726 | 0.0 | 943 |
MS.gene09265.t1 | AT5G27600 | 28.120 | 633 | 377 | 17 | 104 | 720 | 117 | 687 | 5.80e-55 | 201 |
MS.gene09265.t1 | AT2G47240 | 26.767 | 665 | 407 | 20 | 80 | 721 | 46 | 653 | 3.09e-53 | 195 |
MS.gene09265.t1 | AT2G47240 | 26.767 | 665 | 407 | 20 | 80 | 721 | 46 | 653 | 3.09e-53 | 195 |
MS.gene09265.t1 | AT2G47240 | 26.767 | 665 | 407 | 20 | 80 | 721 | 46 | 653 | 3.09e-53 | 195 |
MS.gene09265.t1 | AT3G05970 | 30.444 | 473 | 271 | 11 | 262 | 721 | 261 | 688 | 3.73e-52 | 193 |
MS.gene09265.t1 | AT2G47240 | 26.512 | 645 | 399 | 19 | 95 | 721 | 7 | 594 | 6.84e-52 | 190 |
MS.gene09265.t1 | AT1G64400 | 25.595 | 672 | 420 | 21 | 73 | 721 | 42 | 656 | 1.73e-46 | 176 |
MS.gene09265.t1 | AT4G23850 | 25.637 | 667 | 412 | 17 | 80 | 721 | 49 | 656 | 1.18e-45 | 174 |
MS.gene09265.t1 | AT1G49430 | 26.242 | 644 | 388 | 19 | 102 | 720 | 76 | 657 | 1.99e-44 | 170 |
MS.gene09265.t1 | AT1G77590 | 25.389 | 642 | 394 | 18 | 106 | 720 | 107 | 690 | 4.48e-42 | 163 |
MS.gene09265.t1 | AT4G11030 | 25.411 | 669 | 411 | 23 | 80 | 721 | 49 | 656 | 1.51e-41 | 161 |
MS.gene09265.t1 | AT2G04350 | 25.350 | 643 | 397 | 21 | 107 | 720 | 131 | 719 | 5.56e-40 | 157 |
MS.gene09265.t1 | AT2G04350 | 25.350 | 643 | 397 | 21 | 107 | 720 | 131 | 719 | 5.56e-40 | 157 |
MS.gene09265.t1 | AT1G77590 | 26.283 | 487 | 292 | 16 | 261 | 720 | 98 | 544 | 1.15e-33 | 136 |
MS.gene09265.t1 | AT1G49430 | 26.360 | 478 | 282 | 15 | 102 | 560 | 76 | 502 | 1.30e-30 | 127 |
MS.gene09265.t1 | AT1G20510 | 26.136 | 528 | 274 | 16 | 85 | 605 | 39 | 457 | 2.79e-30 | 125 |
MS.gene09265.t1 | AT1G20510 | 25.483 | 569 | 306 | 17 | 85 | 646 | 39 | 496 | 3.11e-30 | 126 |
MS.gene09265.t1 | AT1G20510 | 25.486 | 514 | 268 | 15 | 85 | 591 | 39 | 444 | 3.49e-28 | 119 |
MS.gene09265.t1 | AT5G63380 | 28.691 | 359 | 158 | 14 | 259 | 606 | 201 | 472 | 5.82e-21 | 97.8 |
MS.gene09265.t1 | AT1G20480 | 23.356 | 578 | 323 | 20 | 37 | 605 | 12 | 478 | 1.75e-20 | 96.3 |
MS.gene09265.t1 | AT3G21240 | 31.225 | 253 | 129 | 9 | 412 | 632 | 255 | 494 | 3.04e-20 | 95.5 |
MS.gene09265.t1 | AT4G05160 | 29.470 | 302 | 162 | 11 | 383 | 669 | 243 | 508 | 8.65e-20 | 94.0 |
MS.gene09265.t1 | AT4G05160 | 25.926 | 243 | 152 | 8 | 81 | 320 | 33 | 250 | 8.78e-14 | 75.1 |
MS.gene09265.t1 | AT3G21240 | 32.231 | 242 | 119 | 9 | 412 | 621 | 255 | 483 | 9.81e-20 | 93.6 |
MS.gene09265.t1 | AT3G21240 | 32.231 | 242 | 119 | 9 | 412 | 621 | 255 | 483 | 9.81e-20 | 93.6 |
MS.gene09265.t1 | AT3G21230 | 34.463 | 177 | 93 | 6 | 454 | 621 | 335 | 497 | 3.16e-18 | 89.4 |
MS.gene09265.t1 | AT3G21230 | 34.463 | 177 | 93 | 6 | 454 | 621 | 335 | 497 | 3.63e-18 | 89.0 |
MS.gene09265.t1 | AT3G21230 | 34.463 | 177 | 93 | 6 | 454 | 621 | 335 | 497 | 4.18e-18 | 88.6 |
MS.gene09265.t1 | AT4G19010 | 28.899 | 218 | 131 | 7 | 458 | 665 | 333 | 536 | 1.03e-16 | 84.3 |
MS.gene09265.t1 | AT1G51680 | 31.892 | 185 | 108 | 5 | 455 | 632 | 328 | 501 | 1.19e-14 | 77.8 |
MS.gene09265.t1 | AT1G51680 | 31.892 | 185 | 108 | 5 | 455 | 632 | 328 | 501 | 1.23e-14 | 77.8 |
MS.gene09265.t1 | AT1G65060 | 32.919 | 161 | 92 | 4 | 477 | 632 | 355 | 504 | 3.92e-14 | 76.3 |
MS.gene09265.t1 | AT1G51680 | 33.333 | 174 | 98 | 5 | 455 | 621 | 328 | 490 | 5.19e-14 | 75.5 |
MS.gene09265.t1 | AT1G21530 | 30.159 | 189 | 107 | 7 | 454 | 628 | 302 | 479 | 1.65e-13 | 74.3 |
MS.gene09265.t1 | AT1G21530 | 30.159 | 189 | 107 | 7 | 454 | 628 | 300 | 477 | 1.97e-13 | 73.9 |
MS.gene09265.t1 | AT1G75960 | 31.746 | 189 | 103 | 7 | 454 | 628 | 303 | 479 | 3.93e-13 | 73.2 |
MS.gene09265.t1 | AT1G20500 | 30.374 | 214 | 127 | 7 | 456 | 661 | 321 | 520 | 1.13e-12 | 71.6 |
MS.gene09265.t1 | AT1G68270 | 30.263 | 228 | 120 | 9 | 454 | 655 | 276 | 490 | 3.14e-12 | 70.1 |
MS.gene09265.t1 | AT1G77240 | 25.896 | 251 | 137 | 9 | 401 | 628 | 256 | 480 | 4.38e-12 | 69.7 |
MS.gene09265.t1 | AT1G21540 | 29.101 | 189 | 109 | 6 | 454 | 628 | 305 | 482 | 6.76e-12 | 69.3 |
MS.gene09265.t1 | AT1G65060 | 37.234 | 94 | 54 | 1 | 477 | 565 | 355 | 448 | 1.66e-11 | 67.8 |
MS.gene09265.t1 | AT3G48990 | 29.240 | 171 | 104 | 6 | 461 | 628 | 294 | 450 | 1.72e-11 | 67.8 |
Find 157 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTCAATGTTGGACTGTTTA+TGG | 0.106185 | 4.1:-14571616 | MS.gene09265:CDS |
GGAAAGTTGTTCCTGATATT+TGG | 0.147820 | 4.1:-14580467 | MS.gene09265:CDS |
GCAATTCGGTTAAACATTTC+AGG | 0.170564 | 4.1:+14578850 | None:intergenic |
GCAGAAGGCCTAAGAGTTAT+TGG | 0.224398 | 4.1:-14580244 | MS.gene09265:CDS |
ATTATTTCCAATTCATCTTC+TGG | 0.275384 | 4.1:-14571573 | MS.gene09265:CDS |
TCAGAATCTCCGTTTCAAAT+TGG | 0.278300 | 4.1:-14568230 | MS.gene09265:CDS |
GTAGTTGGAGCAGGCAATTT+TGG | 0.295704 | 4.1:-14580272 | MS.gene09265:intron |
GGCTAGTAGATATCTGCTTC+TGG | 0.304018 | 4.1:+14572185 | None:intergenic |
TGAAGGTTATTGGATCTGTT+GGG | 0.308004 | 4.1:-14570319 | MS.gene09265:intron |
TTTCTTCATCGATCAGCTTC+AGG | 0.311752 | 4.1:+14578764 | None:intergenic |
TTTCATGGAAGTCATAGATT+TGG | 0.317945 | 4.1:-14578719 | MS.gene09265:CDS |
TTCAATGTTGGACTGTTTAT+GGG | 0.331304 | 4.1:-14571615 | MS.gene09265:CDS |
TTGAATTCCGTGTGCTGAAC+TGG | 0.336809 | 4.1:+14570293 | None:intergenic |
ATTCAACAAATTGTAGTTGT+TGG | 0.347168 | 4.1:-14568756 | MS.gene09265:CDS |
TTTGTTGCCAGAAGATGAAT+TGG | 0.348537 | 4.1:+14571566 | None:intergenic |
TGGGTAAGCATAACACCTTT+TGG | 0.351150 | 4.1:+14573342 | None:intergenic |
GTTCACTGACAGATTGATAA+TGG | 0.351731 | 4.1:-14568098 | MS.gene09265:intron |
GTAATGAACTTTCTAGAAAA+GGG | 0.356007 | 4.1:+14580538 | None:intergenic |
TTCATGGAAGTCATAGATTT+GGG | 0.356900 | 4.1:-14578718 | MS.gene09265:CDS |
GAAAGTTCATTACTTGTTGT+TGG | 0.362100 | 4.1:-14580528 | MS.gene09265:CDS |
AGTAAAATCCATTCAGCTAT+TGG | 0.362989 | 4.1:-14571533 | MS.gene09265:CDS |
AAAGTAGTAGATTCTGAAAC+TGG | 0.363377 | 4.1:-14570272 | MS.gene09265:CDS |
AAGGCCTGGTTTGTAGCTAA+TGG | 0.364321 | 4.1:+14569927 | None:intergenic |
GGTCCCAATCTTTAGTTTCA+TGG | 0.370768 | 4.1:-14578734 | MS.gene09265:CDS |
GCAGAAGATCTCCAAATATC+AGG | 0.371470 | 4.1:+14580456 | None:intergenic |
CCATCGGAACCTTCTGCATC+AGG | 0.372239 | 4.1:-14573322 | MS.gene09265:intron |
TTGAAGGTTATTGGATCTGT+TGG | 0.378766 | 4.1:-14570320 | MS.gene09265:intron |
GACACTATTGTGCTTTCAAC+AGG | 0.379738 | 4.1:-14569792 | MS.gene09265:intron |
ATTGCTCCCCATCATTCTAC+TGG | 0.388461 | 4.1:-14569864 | MS.gene09265:CDS |
GCCTTACTCCAATAACTCTT+AGG | 0.394676 | 4.1:+14580236 | None:intergenic |
TTCAAAACTTCTTCACTGTT+CGG | 0.407440 | 4.1:+14568587 | None:intergenic |
TCTTGTAAATGAACCCTTCA+CGG | 0.409041 | 4.1:-14568198 | MS.gene09265:intron |
ACAAATTGTAGTTGTTGGTC+AGG | 0.409385 | 4.1:-14568751 | MS.gene09265:intron |
AGTAATGAACTTTCTAGAAA+AGG | 0.412869 | 4.1:+14580537 | None:intergenic |
ATGCCAGTCTTTGAATAGAA+TGG | 0.415748 | 4.1:+14578823 | None:intergenic |
TTCAAAATGCCCTTTGAACC+TGG | 0.416783 | 4.1:+14570236 | None:intergenic |
TGGCTGAATACTGGTGATCT+AGG | 0.421573 | 4.1:-14569891 | MS.gene09265:CDS |
GTGAAAGTGCAGAATGGATA+TGG | 0.425784 | 4.1:-14570625 | MS.gene09265:CDS |
GGTCGTCGAACAGCAATAAC+TGG | 0.432050 | 4.1:+14570586 | None:intergenic |
ACTTCCATGAAACTAAAGAT+TGG | 0.434054 | 4.1:+14578730 | None:intergenic |
ATATACACAAGTGGAACAAC+TGG | 0.435077 | 4.1:-14573369 | MS.gene09265:CDS |
ATTAGCTACAAACCAGGCCT+TGG | 0.438425 | 4.1:-14569925 | MS.gene09265:CDS |
GACAAGGTGTTCGTTGGTAA+TGG | 0.440700 | 4.1:+14580678 | None:intergenic |
TATCTGCACTGTTTCTGTGT+TGG | 0.441757 | 4.1:+14580575 | None:intergenic |
CTCAACCATGACATATAATC+AGG | 0.443393 | 4.1:-14580382 | MS.gene09265:intron |
AAGGATGGCTGGCTGAATAC+TGG | 0.445795 | 4.1:-14569900 | MS.gene09265:CDS |
AAGTGTCAGCTTAGCATACA+TGG | 0.448650 | 4.1:-14572128 | MS.gene09265:CDS |
TTCTTAGCATGCTGCCACCT+TGG | 0.465345 | 4.1:-14573007 | MS.gene09265:CDS |
AGAAGGTGAAAATGTTGAAC+CGG | 0.465849 | 4.1:-14568814 | MS.gene09265:intron |
GTATCTATTGTAGTTGGAGC+AGG | 0.466069 | 4.1:-14580281 | MS.gene09265:intron |
CAATTCGGTTAAACATTTCA+GGG | 0.466083 | 4.1:+14578851 | None:intergenic |
TACAAACCAGGCCTTGGATA+AGG | 0.468677 | 4.1:-14569919 | MS.gene09265:CDS |
GCACTACAGGCTGGAATAAG+TGG | 0.470049 | 4.1:-14570771 | MS.gene09265:intron |
GGTTCATTTACAAGAAGGAT+TGG | 0.478476 | 4.1:+14568206 | None:intergenic |
CTTCCATGAAACTAAAGATT+GGG | 0.478570 | 4.1:+14578731 | None:intergenic |
CTGATTATATGTCATGGTTG+AGG | 0.481462 | 4.1:+14580383 | None:intergenic |
CACTACAGGCTGGAATAAGT+GGG | 0.483325 | 4.1:-14570770 | MS.gene09265:intron |
GGAATATAAACGTATTTATG+AGG | 0.483400 | 4.1:-14572107 | MS.gene09265:intron |
AGCCATCCTTATCCAAGGCC+TGG | 0.486245 | 4.1:+14569913 | None:intergenic |
GCCTAAGAGTTATTGGAGTA+AGG | 0.490095 | 4.1:-14580237 | MS.gene09265:CDS |
GTTCTTCCACCAGGTTCAAA+GGG | 0.490285 | 4.1:-14570245 | MS.gene09265:CDS |
GGCTGAATACTGGTGATCTA+GGG | 0.496008 | 4.1:-14569890 | MS.gene09265:CDS |
ATATAGGATAAGCGACGTCT+TGG | 0.498942 | 4.1:-14568623 | MS.gene09265:intron |
AATCTGTCTCCAACCTCAGC+AGG | 0.499432 | 4.1:+14573029 | None:intergenic |
TTGATAGTCCAATAGCTGAA+TGG | 0.499961 | 4.1:+14571525 | None:intergenic |
TTGAATTAAGCTACTCCTCA+TGG | 0.500233 | 4.1:+14568773 | None:intergenic |
GAAGGTTATTGGATCTGTTG+GGG | 0.501647 | 4.1:-14570318 | MS.gene09265:intron |
TGATTATATGTCATGGTTGA+GGG | 0.505022 | 4.1:+14580384 | None:intergenic |
TTGCAGATAATTCATGTCGT+TGG | 0.506026 | 4.1:-14580192 | MS.gene09265:CDS |
AAACCATTCTATTCAAAGAC+TGG | 0.506704 | 4.1:-14578826 | MS.gene09265:CDS |
ATGATGATATTGATCTACTA+AGG | 0.509052 | 4.1:+14580410 | None:intergenic |
TTCCAGAACCTAACCGTGAA+GGG | 0.509659 | 4.1:+14568185 | None:intergenic |
ACATAGCTTACATTACATCT+AGG | 0.510214 | 4.1:+14570565 | None:intergenic |
ACAACGAGGAAGAGCATAGT+TGG | 0.513283 | 4.1:+14580617 | None:intergenic |
GACTCCGCCCAGTAGAATGA+TGG | 0.514563 | 4.1:+14569856 | None:intergenic |
AGTTCTTCCACCAGGTTCAA+AGG | 0.514899 | 4.1:-14570246 | MS.gene09265:CDS |
AGGATTGGTCCAATTTGAAA+CGG | 0.520980 | 4.1:+14568221 | None:intergenic |
AGGGGTCCACCAGTGATGAA+TGG | 0.521283 | 4.1:-14570209 | MS.gene09265:CDS |
GGAGCAATCAATGTGGTAAG+AGG | 0.521829 | 4.1:-14579113 | MS.gene09265:CDS |
TTCCATCGTCAATTCAATGT+TGG | 0.522836 | 4.1:-14571627 | MS.gene09265:CDS |
TGAAGGGTTCATTTACAAGA+AGG | 0.527839 | 4.1:+14568201 | None:intergenic |
CTGTAGACTCATCAGATGAC+TGG | 0.530977 | 4.1:-14580488 | MS.gene09265:CDS |
AACATTGAATTGACGATGGA+AGG | 0.533100 | 4.1:+14571629 | None:intergenic |
CGTTGGCTAGTTGCAGATCA+AGG | 0.533642 | 4.1:-14580175 | MS.gene09265:intron |
ATATATAAAGAACTAAAGAC+CGG | 0.533743 | 4.1:-14568491 | MS.gene09265:CDS |
AGGCCTTGGATAAGGATGGC+TGG | 0.538910 | 4.1:-14569911 | MS.gene09265:CDS |
CAGAAATCATGTAATGTGGT+TGG | 0.539842 | 4.1:+14572649 | None:intergenic |
AAATATACAGCCACTCTGAA+AGG | 0.541396 | 4.1:-14579061 | MS.gene09265:intron |
ACTAACAATATCAGAACTGA+TGG | 0.549027 | 4.1:+14568535 | None:intergenic |
TTCAGCTATTGGACTATCAA+AGG | 0.550126 | 4.1:-14571522 | MS.gene09265:intron |
TAATACCTTCAGGTTTCTCA+CGG | 0.553913 | 4.1:+14572920 | None:intergenic |
TTGTAGTATCCATTCATCAC+TGG | 0.555403 | 4.1:+14570200 | None:intergenic |
ACTCCGCCCAGTAGAATGAT+GGG | 0.558505 | 4.1:+14569857 | None:intergenic |
AAAGACCTGATTATATGTCA+TGG | 0.562961 | 4.1:+14580377 | None:intergenic |
GCAGCTTCTTCAAGTTCAGC+CGG | 0.565788 | 4.1:+14568795 | None:intergenic |
GGAACAACTGGAAATCCAAA+AGG | 0.565966 | 4.1:-14573357 | MS.gene09265:CDS |
CCTGATGCAGAAGGTTCCGA+TGG | 0.568264 | 4.1:+14573322 | None:intergenic |
ATGAATTGGAAATAATATTG+TGG | 0.568324 | 4.1:+14571580 | None:intergenic |
GCTACTCTTATATACACAAG+TGG | 0.572002 | 4.1:-14573378 | MS.gene09265:CDS |
TGATGGTGGTGGTGAAGAAG+TGG | 0.574216 | 4.1:+14580652 | None:intergenic |
CAGTTCTGATATTGTTAGTG+AGG | 0.576268 | 4.1:-14568531 | MS.gene09265:CDS |
TGCAGGGTAAATGTTTAACA+AGG | 0.576611 | 4.1:-14571664 | MS.gene09265:intron |
ATTCCAGAACCTAACCGTGA+AGG | 0.579129 | 4.1:+14568184 | None:intergenic |
TTGCTCCCCATCATTCTACT+GGG | 0.582741 | 4.1:-14569863 | MS.gene09265:CDS |
CTCTAGTGGTGTGATTGTTG+TGG | 0.584202 | 4.1:-14569829 | MS.gene09265:CDS |
AGTCTAGGCATGATGGCAAG+TGG | 0.585928 | 4.1:-14579134 | MS.gene09265:intron |
ATTGGAGTGAAAGTGCAGAA+TGG | 0.587020 | 4.1:-14570631 | MS.gene09265:CDS |
TAGAGTTGTGGCTAAATACA+AGG | 0.596345 | 4.1:-14568042 | MS.gene09265:CDS |
TAGTATCCATTCATCACTGG+TGG | 0.597092 | 4.1:+14570203 | None:intergenic |
CACCCACCATGAAAATTCGA+AGG | 0.598420 | 4.1:-14568067 | MS.gene09265:CDS |
GACGCTGTACCTGCTGAGGT+TGG | 0.603661 | 4.1:-14573038 | MS.gene09265:CDS |
AAACATTTCAGGGCCGTCCA+CGG | 0.605490 | 4.1:+14578861 | None:intergenic |
AATTCGAAGGGATAGAGTTG+TGG | 0.606218 | 4.1:-14568054 | MS.gene09265:CDS |
TGGTAGGACAAGGTGTTCGT+TGG | 0.614688 | 4.1:+14580672 | None:intergenic |
TAATGAACTTTCTAGAAAAG+GGG | 0.616322 | 4.1:+14580539 | None:intergenic |
ACTGGTGAAGTTCTTCCACC+AGG | 0.616697 | 4.1:-14570254 | MS.gene09265:CDS |
AGTGTTGCACTAACCGTGGA+CGG | 0.617266 | 4.1:-14578874 | MS.gene09265:CDS |
CAGCCAGCCATCCTTATCCA+AGG | 0.618824 | 4.1:+14569908 | None:intergenic |
GGGCGGAGTCGTAACTCTAG+TGG | 0.623923 | 4.1:-14569843 | MS.gene09265:CDS |
TGGGGTTCCAGTTCAGCACA+CGG | 0.624504 | 4.1:-14570300 | MS.gene09265:CDS |
ATGGGACGCTGTACCTGCTG+AGG | 0.627264 | 4.1:-14573042 | MS.gene09265:CDS |
AACCAGGCCTTGGATAAGGA+TGG | 0.627793 | 4.1:-14569915 | MS.gene09265:CDS |
GCTGATCGATGAAGAAAACA+AGG | 0.633861 | 4.1:-14578758 | MS.gene09265:CDS |
GCTCTTTCGTATGCATGCCA+AGG | 0.636647 | 4.1:+14572990 | None:intergenic |
CTTTCGTATGCATGCCAAGG+TGG | 0.638582 | 4.1:+14572993 | None:intergenic |
AGTGATGAATGGATACTACA+AGG | 0.639900 | 4.1:-14570198 | MS.gene09265:intron |
CTCCCCATCATTCTACTGGG+CGG | 0.640998 | 4.1:-14569860 | MS.gene09265:CDS |
AGTGGTGTGATTGTTGTGGA+CGG | 0.642531 | 4.1:-14569825 | MS.gene09265:CDS |
GGAAGAGCATAGTTGGTGCG+AGG | 0.646130 | 4.1:+14580624 | None:intergenic |
AAAATGCCCTTTGAACCTGG+TGG | 0.647074 | 4.1:+14570239 | None:intergenic |
GGTGCGAGGAAGAGTGATGG+TGG | 0.648174 | 4.1:+14580638 | None:intergenic |
GCGAGGAAGAGTGATGGTGG+TGG | 0.650094 | 4.1:+14580641 | None:intergenic |
TGAATACTGGTGATCTAGGG+TGG | 0.651805 | 4.1:-14569887 | MS.gene09265:CDS |
GTCCAACATTGAATTGACGA+TGG | 0.652243 | 4.1:+14571625 | None:intergenic |
ACCCACCATGAAAATTCGAA+GGG | 0.655378 | 4.1:-14568066 | MS.gene09265:CDS |
GAATCCATTAGCTACAAACC+AGG | 0.658128 | 4.1:-14569931 | MS.gene09265:CDS |
ACTACAGGCTGGAATAAGTG+GGG | 0.664331 | 4.1:-14570769 | MS.gene09265:intron |
GGTGGTGGTGAAGAAGTGGT+AGG | 0.666201 | 4.1:+14580656 | None:intergenic |
GGAACAGAAATCATGTAATG+TGG | 0.670609 | 4.1:+14572645 | None:intergenic |
CTGATGCAGAAGGTTCCGAT+GGG | 0.672718 | 4.1:+14573323 | None:intergenic |
ATTTCCAAAACCTTTCAGAG+TGG | 0.673273 | 4.1:+14579051 | None:intergenic |
TATATAAAGAACTAAAGACC+GGG | 0.674628 | 4.1:-14568490 | MS.gene09265:intron |
GTAATGAAACCTGATGCAGA+AGG | 0.675182 | 4.1:+14573313 | None:intergenic |
CTACAGGCTGGAATAAGTGG+GGG | 0.675424 | 4.1:-14570768 | MS.gene09265:intron |
AACTTGAAGAAGCTGCCATG+AGG | 0.680892 | 4.1:-14568788 | MS.gene09265:CDS |
CTTCAGTGTTGCACTAACCG+TGG | 0.683372 | 4.1:-14578878 | MS.gene09265:intron |
CACAACCGTGAGAAACCTGA+AGG | 0.691000 | 4.1:-14572925 | MS.gene09265:intron |
CTCCGCCCAGTAGAATGATG+GGG | 0.691863 | 4.1:+14569858 | None:intergenic |
AAGGTGTTATGCTTACCCAT+CGG | 0.697644 | 4.1:-14573338 | MS.gene09265:CDS |
GGTGAAGAAGTGGTAGGACA+AGG | 0.700727 | 4.1:+14580662 | None:intergenic |
TCAATGTGGTAAGAGGCTCA+AGG | 0.708762 | 4.1:-14579106 | MS.gene09265:CDS |
TTTGGGACGAGAGAGTCGCA+TGG | 0.718212 | 4.1:-14578701 | MS.gene09265:CDS |
GTTGGTGCGAGGAAGAGTGA+TGG | 0.738075 | 4.1:+14580635 | None:intergenic |
TTATATGTCATGGTTGAGGG+AGG | 0.741546 | 4.1:+14580387 | None:intergenic |
GATCGATGAAGAAAACAAGG+AGG | 0.765475 | 4.1:-14578755 | MS.gene09265:CDS |
GAGAAGACACGAAAACAACG+AGG | 0.778809 | 4.1:+14580603 | None:intergenic |
GGCAAGTGGAGCAATCAATG+TGG | 0.778974 | 4.1:-14579120 | MS.gene09265:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 14568016 | 14580712 | 14568016 | ID=MS.gene09265 |
chr4.1 | mRNA | 14568016 | 14580712 | 14568016 | ID=MS.gene09265.t1;Parent=MS.gene09265 |
chr4.1 | exon | 14580383 | 14580712 | 14580383 | ID=MS.gene09265.t1.exon1;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14580383 | 14580712 | 14580383 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
chr4.1 | exon | 14580176 | 14580290 | 14580176 | ID=MS.gene09265.t1.exon2;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14580176 | 14580290 | 14580176 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
chr4.1 | exon | 14579062 | 14579149 | 14579062 | ID=MS.gene09265.t1.exon3;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14579062 | 14579149 | 14579062 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
chr4.1 | exon | 14578677 | 14578894 | 14578677 | ID=MS.gene09265.t1.exon4;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14578677 | 14578894 | 14578677 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
chr4.1 | exon | 14573323 | 14573441 | 14573323 | ID=MS.gene09265.t1.exon5;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14573323 | 14573441 | 14573323 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
chr4.1 | exon | 14572926 | 14573075 | 14572926 | ID=MS.gene09265.t1.exon6;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14572926 | 14573075 | 14572926 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
chr4.1 | exon | 14572621 | 14572688 | 14572621 | ID=MS.gene09265.t1.exon7;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14572621 | 14572688 | 14572621 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
chr4.1 | exon | 14572108 | 14572213 | 14572108 | ID=MS.gene09265.t1.exon8;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14572108 | 14572213 | 14572108 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
chr4.1 | exon | 14571523 | 14571681 | 14571523 | ID=MS.gene09265.t1.exon9;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14571523 | 14571681 | 14571523 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
chr4.1 | exon | 14570731 | 14570784 | 14570731 | ID=MS.gene09265.t1.exon10;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14570731 | 14570784 | 14570731 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
chr4.1 | exon | 14570576 | 14570656 | 14570576 | ID=MS.gene09265.t1.exon11;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14570576 | 14570656 | 14570576 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
chr4.1 | exon | 14570199 | 14570336 | 14570199 | ID=MS.gene09265.t1.exon12;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14570199 | 14570336 | 14570199 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
chr4.1 | exon | 14569793 | 14569952 | 14569793 | ID=MS.gene09265.t1.exon13;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14569793 | 14569952 | 14569793 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
chr4.1 | exon | 14568752 | 14568831 | 14568752 | ID=MS.gene09265.t1.exon14;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14568752 | 14568831 | 14568752 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
chr4.1 | exon | 14568491 | 14568639 | 14568491 | ID=MS.gene09265.t1.exon15;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14568491 | 14568639 | 14568491 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
chr4.1 | exon | 14568199 | 14568256 | 14568199 | ID=MS.gene09265.t1.exon16;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14568199 | 14568256 | 14568199 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
chr4.1 | exon | 14568016 | 14568108 | 14568016 | ID=MS.gene09265.t1.exon17;Parent=MS.gene09265.t1 |
chr4.1 | CDS | 14568016 | 14568108 | 14568016 | ID=cds.MS.gene09265.t1;Parent=MS.gene09265.t1 |
Gene Sequence |
Protein sequence |