Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046157.t1 | XP_003592828.1 | 93.7 | 222 | 12 | 1 | 1 | 220 | 112 | 333 | 2.40E-116 | 428.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046157.t1 | Q54IK2 | 32.4 | 250 | 148 | 6 | 1 | 241 | 131 | 368 | 4.6e-28 | 126.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046157.t1 | G7IAZ3 | 93.7 | 222 | 12 | 1 | 1 | 220 | 112 | 333 | 1.7e-116 | 428.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene90119 | MS.gene046157 | PPI |
MS.gene74237 | MS.gene046157 | PPI |
MS.gene046157 | MS.gene90882 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046157.t1 | MTR_1g116510 | 93.694 | 222 | 12 | 1 | 1 | 220 | 112 | 333 | 1.50e-143 | 406 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046157.t1 | AT4G10430 | 80.973 | 226 | 41 | 1 | 1 | 224 | 98 | 323 | 8.58e-137 | 389 |
MS.gene046157.t1 | AT4G10430 | 80.973 | 226 | 41 | 1 | 1 | 224 | 98 | 323 | 8.58e-137 | 389 |
MS.gene046157.t1 | AT1G33230 | 78.761 | 226 | 46 | 1 | 1 | 224 | 99 | 324 | 6.27e-132 | 376 |
MS.gene046157.t1 | AT1G33230 | 78.761 | 226 | 46 | 1 | 1 | 224 | 106 | 331 | 1.50e-131 | 375 |
MS.gene046157.t1 | AT4G10430 | 72.764 | 246 | 49 | 1 | 1 | 246 | 22 | 249 | 1.20e-127 | 362 |
MS.gene046157.t1 | AT4G10430 | 80.488 | 205 | 40 | 0 | 1 | 205 | 98 | 302 | 4.93e-123 | 352 |
MS.gene046157.t1 | AT4G10430 | 80.488 | 205 | 40 | 0 | 1 | 205 | 22 | 226 | 7.14e-123 | 349 |
MS.gene046157.t1 | AT4G10430 | 89.130 | 184 | 20 | 0 | 1 | 184 | 98 | 281 | 1.20e-122 | 350 |
MS.gene046157.t1 | AT4G10430 | 89.130 | 184 | 20 | 0 | 1 | 184 | 98 | 281 | 1.20e-122 | 350 |
MS.gene046157.t1 | AT4G10430 | 89.130 | 184 | 20 | 0 | 1 | 184 | 98 | 281 | 1.20e-122 | 350 |
MS.gene046157.t1 | AT4G10430 | 89.130 | 184 | 20 | 0 | 1 | 184 | 98 | 281 | 1.20e-122 | 350 |
Find 62 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGGTAAAGTCAAGATTTA+AGG | 0.208316 | 1.3:+79437666 | MS.gene046157:CDS |
CGAGAGGCACGAACATTAAT+TGG | 0.209868 | 1.3:-79434340 | None:intergenic |
CACTTCTCATTCTAAGATCT+TGG | 0.270929 | 1.3:+79434852 | MS.gene046157:CDS |
TCATTCTAAGATCTTGGGTT+TGG | 0.289517 | 1.3:+79434858 | MS.gene046157:CDS |
GAGAACATATTGAGAGTAAA+TGG | 0.297201 | 1.3:+79435061 | MS.gene046157:CDS |
CATTCTAAGATCTTGGGTTT+GGG | 0.313165 | 1.3:+79434859 | MS.gene046157:CDS |
TGCTCAGAACTGCATTTGTT+GGG | 0.327140 | 1.3:+79437417 | MS.gene046157:CDS |
TACCTGCAATATGAAAAGTA+TGG | 0.346359 | 1.3:-79436639 | None:intergenic |
AAGAGGAATACAACAGTTAC+AGG | 0.348052 | 1.3:+79434386 | MS.gene046157:CDS |
TCATTATTGTGCCATGATAA+TGG | 0.352720 | 1.3:+79436008 | MS.gene046157:CDS |
GCTATTTCTTTACACTGGTT+TGG | 0.353138 | 1.3:+79435030 | MS.gene046157:CDS |
AGTCTCACTTGGGAAATAAA+AGG | 0.361860 | 1.3:+79436039 | MS.gene046157:CDS |
GAAGAGTTAATATCATTATA+AGG | 0.392084 | 1.3:-79437569 | None:intergenic |
TTGCTCAGAACTGCATTTGT+TGG | 0.406680 | 1.3:+79437416 | MS.gene046157:CDS |
ACTTCTCATTCTAAGATCTT+GGG | 0.408886 | 1.3:+79434853 | MS.gene046157:CDS |
CGGTCTCCTGTTGGTTGTCA+TGG | 0.422234 | 1.3:+79437609 | MS.gene046157:CDS |
CTAAGAGGATGGATGTTGTA+TGG | 0.431027 | 1.3:+79436573 | MS.gene046157:CDS |
CTGTTGGTTGTCATGGCCAT+TGG | 0.440508 | 1.3:+79437616 | MS.gene046157:CDS |
CTTTATACTCGTATTGCGTT+GGG | 0.451111 | 1.3:+79436251 | MS.gene046157:CDS |
TGTTGGTTGTCATGGCCATT+GGG | 0.457433 | 1.3:+79437617 | MS.gene046157:CDS |
CAGAACTGCATTTGTTGGGG+TGG | 0.458831 | 1.3:+79437421 | MS.gene046157:CDS |
AGTACCTGGTAAATCTGTAC+TGG | 0.468262 | 1.3:-79434902 | None:intergenic |
GCTTTATACTCGTATTGCGT+TGG | 0.475449 | 1.3:+79436250 | MS.gene046157:CDS |
TCTTTGAATTATAGGCTAAG+AGG | 0.476272 | 1.3:+79436558 | MS.gene046157:intron |
TGGGGTGGCTTCTGAATGGC+AGG | 0.477673 | 1.3:+79437436 | MS.gene046157:CDS |
CTTAGAATGAGAAGTGCTGC+TGG | 0.479516 | 1.3:-79434845 | None:intergenic |
TGGCCCTTGTGAGTCTCACT+TGG | 0.486035 | 1.3:+79436028 | MS.gene046157:CDS |
TGGCTGCTATTTCTTTACAC+TGG | 0.488932 | 1.3:+79435025 | MS.gene046157:CDS |
TCTAAGATCTTGGGTTTGGG+AGG | 0.490954 | 1.3:+79434862 | MS.gene046157:CDS |
CTAAGATCTTGGGTTTGGGA+GGG | 0.495096 | 1.3:+79434863 | MS.gene046157:CDS |
TTGTTGGGGTGGCTTCTGAA+TGG | 0.501334 | 1.3:+79437432 | MS.gene046157:CDS |
TAAGAGGATGGATGTTGTAT+GGG | 0.503535 | 1.3:+79436574 | MS.gene046157:CDS |
TACTCGTATTGCGTTGGGAA+AGG | 0.514448 | 1.3:+79436256 | MS.gene046157:CDS |
CAATGGCCATGACAACCAAC+AGG | 0.515846 | 1.3:-79437615 | None:intergenic |
TATATTGGTTCAGGGATTTG+AGG | 0.518924 | 1.3:+79437376 | MS.gene046157:intron |
ACTCACAAGGGCCATTATCA+TGG | 0.523040 | 1.3:-79436019 | None:intergenic |
TAAATCTGTACTGGAAAAGC+TGG | 0.542899 | 1.3:-79434893 | None:intergenic |
ACCTGCAATATGAAAAGTAT+GGG | 0.545858 | 1.3:-79436638 | None:intergenic |
ATGATATTAACTCTTCGAGC+AGG | 0.567380 | 1.3:+79437576 | MS.gene046157:CDS |
TCGCAAGGATGTTCAGCTCA+AGG | 0.568890 | 1.3:+79434360 | MS.gene046157:CDS |
GCTCAGAACTGCATTTGTTG+GGG | 0.574408 | 1.3:+79437418 | MS.gene046157:CDS |
GGAGAAACAGCTGGTGTGGA+TGG | 0.574533 | 1.3:+79436596 | MS.gene046157:CDS |
CAGGGATTTGAGGCATATGT+CGG | 0.578726 | 1.3:+79437386 | MS.gene046157:intron |
AAAATAGATATCAACGGCAA+AGG | 0.582391 | 1.3:+79436228 | MS.gene046157:CDS |
TAATGTTCGTGCCTCTCGCA+AGG | 0.587007 | 1.3:+79434345 | MS.gene046157:CDS |
CTACAGTGGGCTATGATGCA+AGG | 0.587397 | 1.3:+79436188 | MS.gene046157:CDS |
AAATACAGTTCAGACTCTGT+TGG | 0.591274 | 1.3:+79437648 | MS.gene046157:CDS |
TTTCCCAAGTGAGACTCACA+AGG | 0.597093 | 1.3:-79436032 | None:intergenic |
TGGGACACAGCAACCACAGT+TGG | 0.614281 | 1.3:-79436619 | None:intergenic |
TGAATTATAGGCTAAGAGGA+TGG | 0.614666 | 1.3:+79436562 | MS.gene046157:intron |
CTTGCATCATAGCCCACTGT+AGG | 0.615039 | 1.3:-79436187 | None:intergenic |
AAGAGGATGGATGTTGTATG+GGG | 0.617879 | 1.3:+79436575 | MS.gene046157:CDS |
GTTGTATGGGGAGAAACAGC+TGG | 0.623308 | 1.3:+79436587 | MS.gene046157:CDS |
GGCCCTTGTGAGTCTCACTT+GGG | 0.623892 | 1.3:+79436029 | MS.gene046157:CDS |
ATGGAAGTGATATTCGTCCA+TGG | 0.625077 | 1.3:+79435080 | MS.gene046157:CDS |
AGTGTAAAGAAATAGCAGCC+AGG | 0.633016 | 1.3:-79435023 | None:intergenic |
ATGGGGAGAAACAGCTGGTG+TGG | 0.638330 | 1.3:+79436592 | MS.gene046157:CDS |
AGAGGAATACAACAGTTACA+GGG | 0.648843 | 1.3:+79434387 | MS.gene046157:CDS |
GAGCTGAACATCCTTGCGAG+AGG | 0.657636 | 1.3:-79434356 | None:intergenic |
TGTTCAGCTCAAGGTCAAAG+AGG | 0.660588 | 1.3:+79434369 | MS.gene046157:CDS |
CTGGTGTGGATGGCCAACTG+TGG | 0.666673 | 1.3:+79436606 | MS.gene046157:CDS |
TTCCCAAGTGAGACTCACAA+GGG | 0.703885 | 1.3:-79436031 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATATATCAAAATTTGAAT+AGG | + | chr1.3:79437494-79437513 | MS.gene046157:intron | 10.0% |
!!! | TTTTTTTTTTTTTTACTGTT+AGG | + | chr1.3:79434450-79434469 | MS.gene046157:intron | 10.0% |
!! | AACCATAAAATTAATATCAT+AGG | - | chr1.3:79436484-79436503 | None:intergenic | 15.0% |
!! | ACCATAAAATTAATATCATA+GGG | - | chr1.3:79436483-79436502 | None:intergenic | 15.0% |
!! | GTTATTATTATTAATCAAAC+TGG | + | chr1.3:79434511-79434530 | MS.gene046157:intron | 15.0% |
!!! | ACTTAAATTTTAGGTAATTA+TGG | - | chr1.3:79434493-79434512 | None:intergenic | 15.0% |
!!! | CTTTTCTTTTCTAAAAATTA+AGG | - | chr1.3:79436839-79436858 | None:intergenic | 15.0% |
!! | AAAAAAAAGATTAACATGCA+AGG | - | chr1.3:79434436-79434455 | None:intergenic | 20.0% |
!! | AAAAAAAGATTAACATGCAA+GGG | - | chr1.3:79434435-79434454 | None:intergenic | 20.0% |
!! | AGACATTATTTCAATTAGTT+CGG | + | chr1.3:79435336-79435355 | MS.gene046157:intron | 20.0% |
!! | GAAGAGTTAATATCATTATA+AGG | - | chr1.3:79437572-79437591 | None:intergenic | 20.0% |
!! | TAAAATATACTATTTAGCAG+TGG | - | chr1.3:79436284-79436303 | None:intergenic | 20.0% |
!! | TTATTATTAATCAAACTGGA+AGG | + | chr1.3:79434515-79434534 | MS.gene046157:intron | 20.0% |
!!! | ATTCTCTTTTACGATAATAA+AGG | - | chr1.3:79435786-79435805 | None:intergenic | 20.0% |
!!! | TCCCTATGATATTAATTTTA+TGG | + | chr1.3:79436479-79436498 | MS.gene046157:intron | 20.0% |
!!! | TCTCATTTTCTTTGAATTAT+AGG | + | chr1.3:79436550-79436569 | MS.gene046157:intron | 20.0% |
!!! | TTATTAAGTCCAAGTTTTTT+TGG | + | chr1.3:79437014-79437033 | MS.gene046157:intron | 20.0% |
!!! | TTATTTTTTGATAAGCTGTT+TGG | + | chr1.3:79437103-79437122 | MS.gene046157:intron | 20.0% |
!!! | TTCTCTTTTACGATAATAAA+GGG | - | chr1.3:79435785-79435804 | None:intergenic | 20.0% |
!!! | TTGTGAAACTTTTATGAAAA+TGG | + | chr1.3:79434776-79434795 | MS.gene046157:intron | 20.0% |
!!! | TTGTTATTGACTTTTTAACT+AGG | - | chr1.3:79434557-79434576 | None:intergenic | 20.0% |
!!! | TTTTGCAAAATAGATATCAA+CGG | + | chr1.3:79436222-79436241 | MS.gene046157:CDS | 20.0% |
!!! | TTTTTTTTTACTGTTAGGAA+AGG | + | chr1.3:79434455-79434474 | MS.gene046157:intron | 20.0% |
! | AAACAAACAGTTTCAAACAA+AGG | - | chr1.3:79435581-79435600 | None:intergenic | 25.0% |
! | ATAATAGCACCAAAAAAACT+TGG | - | chr1.3:79437026-79437045 | None:intergenic | 25.0% |
! | ATTAGATTGAGTACAAAGAA+TGG | + | chr1.3:79435831-79435850 | MS.gene046157:intron | 25.0% |
! | ATTATTTCAATTAGTTCGGA+CGG | + | chr1.3:79435340-79435359 | MS.gene046157:intron | 25.0% |
! | ATTCGCGAAAATTGAATTAT+CGG | + | chr1.3:79437283-79437302 | MS.gene046157:intron | 25.0% |
! | CATCAAAAAGAAAAAGCTAA+TGG | - | chr1.3:79436109-79436128 | None:intergenic | 25.0% |
! | CATTAAAATGATTCTGATTC+TGG | + | chr1.3:79437521-79437540 | MS.gene046157:intron | 25.0% |
! | CTATTTCCAATCAATATGTT+TGG | - | chr1.3:79436515-79436534 | None:intergenic | 25.0% |
! | CTTTGTACTCAATCTAATAT+GGG | - | chr1.3:79435829-79435848 | None:intergenic | 25.0% |
! | GCAATTATTCCAAAAACATA+AGG | - | chr1.3:79436889-79436908 | None:intergenic | 25.0% |
! | GCATATATCATGTGTTAATA+TGG | + | chr1.3:79437185-79437204 | MS.gene046157:intron | 25.0% |
! | GTAACTGTTTAACTCAATAT+AGG | - | chr1.3:79437078-79437097 | None:intergenic | 25.0% |
! | TCTTTCATAATTGCTTAAAG+AGG | + | chr1.3:79435752-79435771 | MS.gene046157:intron | 25.0% |
! | TCTTTGTACTCAATCTAATA+TGG | - | chr1.3:79435830-79435849 | None:intergenic | 25.0% |
! | TTAGATTGAGTACAAAGAAT+GGG | + | chr1.3:79435832-79435851 | MS.gene046157:intron | 25.0% |
! | TTATTCCAAAAACATAAGGA+TGG | - | chr1.3:79436885-79436904 | None:intergenic | 25.0% |
!! | TATCGGATTTATTCATGTTT+TGG | + | chr1.3:79437300-79437319 | MS.gene046157:intron | 25.0% |
!!! | ATTTTCATTCCTTGTTTACA+TGG | + | chr1.3:79435932-79435951 | MS.gene046157:intron | 25.0% |
!!! | TTTGAAACTGTTTGTTTTTG+AGG | + | chr1.3:79435584-79435603 | MS.gene046157:intron | 25.0% |
!!! | TTTTCATTCCTTGTTTACAT+GGG | + | chr1.3:79435933-79435952 | MS.gene046157:intron | 25.0% |
!!! | TTTTGGAATAATTGCACATT+TGG | + | chr1.3:79436894-79436913 | MS.gene046157:intron | 25.0% |
AAAAGAAAAAGCTAATGGTC+AGG | - | chr1.3:79436104-79436123 | None:intergenic | 30.0% | |
AAAATAGATATCAACGGCAA+AGG | + | chr1.3:79436228-79436247 | MS.gene046157:CDS | 30.0% | |
AAAGAAAAAGCTAATGGTCA+GGG | - | chr1.3:79436103-79436122 | None:intergenic | 30.0% | |
AAATAGTGAGAAAAAGACTC+GGG | - | chr1.3:79436385-79436404 | None:intergenic | 30.0% | |
AACATGACATGAAACAAGAT+TGG | - | chr1.3:79434938-79434957 | None:intergenic | 30.0% | |
AACTCAATAAGTTCAGAAAC+AGG | - | chr1.3:79435668-79435687 | None:intergenic | 30.0% | |
AATGAAGTAAAAAAGCAAGC+AGG | - | chr1.3:79437474-79437493 | None:intergenic | 30.0% | |
ATCAAGATGTGGAATTTGAA+TGG | - | chr1.3:79435295-79435314 | None:intergenic | 30.0% | |
CAAATAGTGAGAAAAAGACT+CGG | - | chr1.3:79436386-79436405 | None:intergenic | 30.0% | |
CTTTCTCCAAACATATTGAT+TGG | + | chr1.3:79436506-79436525 | MS.gene046157:intron | 30.0% | |
CTTTCTTTGTGATCCTATAT+TGG | + | chr1.3:79437361-79437380 | MS.gene046157:intron | 30.0% | |
GAGAACATATTGAGAGTAAA+TGG | + | chr1.3:79435061-79435080 | MS.gene046157:CDS | 30.0% | |
TACCTGCAATATGAAAAGTA+TGG | - | chr1.3:79436642-79436661 | None:intergenic | 30.0% | |
TCATAAGTAGCCATATAGTA+TGG | - | chr1.3:79436666-79436685 | None:intergenic | 30.0% | |
TCATTATTGTGCCATGATAA+TGG | + | chr1.3:79436008-79436027 | MS.gene046157:CDS | 30.0% | |
TCTTTGAATTATAGGCTAAG+AGG | + | chr1.3:79436558-79436577 | MS.gene046157:intron | 30.0% | |
TGATCCTTGTGAAACAATAA+TGG | + | chr1.3:79435155-79435174 | MS.gene046157:intron | 30.0% | |
TGCTTCGAAATTTATTGTTC+TGG | + | chr1.3:79437238-79437257 | MS.gene046157:intron | 30.0% | |
TTACATGGGACAAAATTGTT+TGG | + | chr1.3:79435947-79435966 | MS.gene046157:intron | 30.0% | |
TTATTTCAATTAGTTCGGAC+GGG | + | chr1.3:79435341-79435360 | MS.gene046157:intron | 30.0% | |
TTGCTATGCAAGATAGAAAA+AGG | - | chr1.3:79435703-79435722 | None:intergenic | 30.0% | |
! | AATTTTGTCCCATGTAAACA+AGG | - | chr1.3:79435944-79435963 | None:intergenic | 30.0% |
! | ACCTGCAATATGAAAAGTAT+GGG | - | chr1.3:79436641-79436660 | None:intergenic | 30.0% |
! | ATGTTTAAGCTTTATGATGG+AGG | + | chr1.3:79435370-79435389 | MS.gene046157:intron | 30.0% |
! | GCAATGTTTAAGCTTTATGA+TGG | + | chr1.3:79435367-79435386 | MS.gene046157:intron | 30.0% |
! | TGTTTAAGCTTTATGATGGA+GGG | + | chr1.3:79435371-79435390 | MS.gene046157:intron | 30.0% |
!! | ACTTCTCATTCTAAGATCTT+GGG | + | chr1.3:79434853-79434872 | MS.gene046157:CDS | 30.0% |
!! | GAACTTATTGAGTTTTTCAG+TGG | + | chr1.3:79435674-79435693 | MS.gene046157:intron | 30.0% |
!! | TATGTTTGGGAGTTTGATTT+TGG | + | chr1.3:79436706-79436725 | MS.gene046157:intron | 30.0% |
!! | TGTATTTTGAAAGTTCCCAA+TGG | - | chr1.3:79437635-79437654 | None:intergenic | 30.0% |
!! | TTGGTTTAAAAGAAAGTACC+TGG | - | chr1.3:79434919-79434938 | None:intergenic | 30.0% |
AAAAGATTAACATGCAAGGG+AGG | - | chr1.3:79434432-79434451 | None:intergenic | 35.0% | |
AAAGACTGAGAACAGAATCT+AGG | - | chr1.3:79435216-79435235 | None:intergenic | 35.0% | |
AAATACAGTTCAGACTCTGT+TGG | + | chr1.3:79437648-79437667 | MS.gene046157:CDS | 35.0% | |
AAGAGGAATACAACAGTTAC+AGG | + | chr1.3:79434386-79434405 | MS.gene046157:CDS | 35.0% | |
AATGGACCACAGTTCATTAA+CGG | + | chr1.3:79435173-79435192 | MS.gene046157:intron | 35.0% | |
ACAAGAATGACAGTTTAAGC+TGG | - | chr1.3:79435882-79435901 | None:intergenic | 35.0% | |
ACGAATTAAGCACATCCAAA+TGG | - | chr1.3:79437052-79437071 | None:intergenic | 35.0% | |
AGAGGAATACAACAGTTACA+GGG | + | chr1.3:79434387-79434406 | MS.gene046157:CDS | 35.0% | |
AGCAATAAGGTAGTCAATTG+TGG | - | chr1.3:79434716-79434735 | None:intergenic | 35.0% | |
AGTCTCACTTGGGAAATAAA+AGG | + | chr1.3:79436039-79436058 | MS.gene046157:CDS | 35.0% | |
ATATAAACTACCAGAAAGCC+TGG | - | chr1.3:79435130-79435149 | None:intergenic | 35.0% | |
ATCAGAGGAAGAAGAATCAA+GGG | + | chr1.3:79434591-79434610 | MS.gene046157:intron | 35.0% | |
ATGATATTAACTCTTCGAGC+AGG | + | chr1.3:79437576-79437595 | MS.gene046157:CDS | 35.0% | |
CAGAAAGCCTGGATTAAAAA+GGG | - | chr1.3:79435119-79435138 | None:intergenic | 35.0% | |
CAGACATGCTAATGAAGTTT+GGG | - | chr1.3:79435539-79435558 | None:intergenic | 35.0% | |
CATCTTGATTTATGCTTTGG+AGG | + | chr1.3:79435306-79435325 | MS.gene046157:intron | 35.0% | |
CCAAAGCATAAATCAAGATG+TGG | - | chr1.3:79435306-79435325 | None:intergenic | 35.0% | |
CCACATCTTGATTTATGCTT+TGG | + | chr1.3:79435303-79435322 | MS.gene046157:intron | 35.0% | |
CTCAATCTAATATGGGATCA+CGG | - | chr1.3:79435822-79435841 | None:intergenic | 35.0% | |
CTTTATACTCGTATTGCGTT+GGG | + | chr1.3:79436251-79436270 | MS.gene046157:CDS | 35.0% | |
GCAATAAGGTAGTCAATTGT+GGG | - | chr1.3:79434715-79434734 | None:intergenic | 35.0% | |
GTTTGAGCTATGTACAACTT+TGG | - | chr1.3:79436977-79436996 | None:intergenic | 35.0% | |
TAAATCTGTACTGGAAAAGC+TGG | - | chr1.3:79434896-79434915 | None:intergenic | 35.0% | |
TAAGAGGATGGATGTTGTAT+GGG | + | chr1.3:79436574-79436593 | MS.gene046157:CDS | 35.0% | |
TAGCCACTTATGGTATGTTT+GGG | + | chr1.3:79436693-79436712 | MS.gene046157:intron | 35.0% | |
TAGTCAATTGTGGGATATTG+CGG | - | chr1.3:79434706-79434725 | None:intergenic | 35.0% | |
TATTACCCGTTAATGAACTG+TGG | - | chr1.3:79435182-79435201 | None:intergenic | 35.0% | |
TCAAATCCCTGAACCAATAT+AGG | - | chr1.3:79437377-79437396 | None:intergenic | 35.0% | |
TCAATAACAACTACATGCCT+AGG | + | chr1.3:79434567-79434586 | MS.gene046157:intron | 35.0% | |
TCAATCTAATATGGGATCAC+GGG | - | chr1.3:79435821-79435840 | None:intergenic | 35.0% | |
TCAGACATGCTAATGAAGTT+TGG | - | chr1.3:79435540-79435559 | None:intergenic | 35.0% | |
TCCAAAAACATAAGGATGGA+GGG | - | chr1.3:79436881-79436900 | None:intergenic | 35.0% | |
TGAATTATAGGCTAAGAGGA+TGG | + | chr1.3:79436562-79436581 | MS.gene046157:intron | 35.0% | |
TGATGTATGTTAGCCACTTA+TGG | + | chr1.3:79436683-79436702 | MS.gene046157:intron | 35.0% | |
TGGCAAATAAAGTTACTGTG+CGG | + | chr1.3:79435967-79435986 | MS.gene046157:intron | 35.0% | |
TGGTCCATTATTGTTTCACA+AGG | - | chr1.3:79435162-79435181 | None:intergenic | 35.0% | |
TTAGCCACTTATGGTATGTT+TGG | + | chr1.3:79436692-79436711 | MS.gene046157:intron | 35.0% | |
TTCCAAAAACATAAGGATGG+AGG | - | chr1.3:79436882-79436901 | None:intergenic | 35.0% | |
TTGCAGGTAACCATACTATA+TGG | + | chr1.3:79436653-79436672 | MS.gene046157:intron | 35.0% | |
! | AAATGGCACATCTTTTGTTC+AGG | + | chr1.3:79434793-79434812 | MS.gene046157:intron | 35.0% |
! | ATGACGGAAAAATTATGCGT+GGG | - | chr1.3:79436342-79436361 | None:intergenic | 35.0% |
! | CTTCAAACCCTTTTTAATCC+AGG | + | chr1.3:79435109-79435128 | MS.gene046157:intron | 35.0% |
! | TCCCATACTTTTCATATTGC+AGG | + | chr1.3:79436637-79436656 | MS.gene046157:CDS | 35.0% |
! | TGATGGTGAATTCGAGAATT+CGG | - | chr1.3:79434624-79434643 | None:intergenic | 35.0% |
! | TGTACAACTTTTCCTACAGT+GGG | + | chr1.3:79436175-79436194 | MS.gene046157:CDS | 35.0% |
! | TTCGAGCAGGTAATATTTTG+CGG | + | chr1.3:79437589-79437608 | MS.gene046157:CDS | 35.0% |
! | TTTTCAGACACTTGATTGAG+TGG | - | chr1.3:79435467-79435486 | None:intergenic | 35.0% |
! | TTTTCCAGTACAGATTTACC+AGG | + | chr1.3:79434898-79434917 | MS.gene046157:CDS | 35.0% |
!! | ATTGAGCGTGATCATTTTTC+AGG | + | chr1.3:79435000-79435019 | MS.gene046157:intron | 35.0% |
!! | CACTTCTCATTCTAAGATCT+TGG | + | chr1.3:79434852-79434871 | MS.gene046157:CDS | 35.0% |
!! | CATTCTAAGATCTTGGGTTT+GGG | + | chr1.3:79434859-79434878 | MS.gene046157:CDS | 35.0% |
!! | GCATCTTTTGTTGTGAGTAA+CGG | + | chr1.3:79437152-79437171 | MS.gene046157:intron | 35.0% |
!! | GCTATTTCTTTACACTGGTT+TGG | + | chr1.3:79435030-79435049 | MS.gene046157:CDS | 35.0% |
!! | TATATTGGTTCAGGGATTTG+AGG | + | chr1.3:79437376-79437395 | MS.gene046157:intron | 35.0% |
!! | TCATTCTAAGATCTTGGGTT+TGG | + | chr1.3:79434858-79434877 | MS.gene046157:CDS | 35.0% |
!! | TGTGATCCTATATTGGTTCA+GGG | + | chr1.3:79437368-79437387 | MS.gene046157:intron | 35.0% |
!! | TTGTGATCCTATATTGGTTC+AGG | + | chr1.3:79437367-79437386 | MS.gene046157:intron | 35.0% |
!! | TTTGGGAGTTTGATTTTGGA+GGG | + | chr1.3:79436710-79436729 | MS.gene046157:intron | 35.0% |
!! | TTTTGGAAGTAACCTGAACT+TGG | + | chr1.3:79437317-79437336 | MS.gene046157:intron | 35.0% |
!!! | ACTGTTTGTTTTTGAGGCTT+TGG | + | chr1.3:79435590-79435609 | MS.gene046157:intron | 35.0% |
AAACAGACAAAGCAGGATGA+CGG | - | chr1.3:79436358-79436377 | None:intergenic | 40.0% | |
AACCTGAACTTGGAAAAGCT+TGG | + | chr1.3:79437327-79437346 | MS.gene046157:intron | 40.0% | |
AAGAGGATGGATGTTGTATG+GGG | + | chr1.3:79436575-79436594 | MS.gene046157:CDS | 40.0% | |
ACTCCCAAACATACCATAAG+TGG | - | chr1.3:79436699-79436718 | None:intergenic | 40.0% | |
AGTACCTGGTAAATCTGTAC+TGG | - | chr1.3:79434905-79434924 | None:intergenic | 40.0% | |
AGTGTAAAGAAATAGCAGCC+AGG | - | chr1.3:79435026-79435045 | None:intergenic | 40.0% | |
AGTTTGGGAAGAAGGTTTCA+AGG | - | chr1.3:79435524-79435543 | None:intergenic | 40.0% | |
ATGGAAGTGATATTCGTCCA+TGG | + | chr1.3:79435080-79435099 | MS.gene046157:CDS | 40.0% | |
ATGGACCACAGTTCATTAAC+GGG | + | chr1.3:79435174-79435193 | MS.gene046157:intron | 40.0% | |
CAATCTAATATGGGATCACG+GGG | - | chr1.3:79435820-79435839 | None:intergenic | 40.0% | |
CATCAGAGGAAGAAGAATCA+AGG | + | chr1.3:79434590-79434609 | MS.gene046157:intron | 40.0% | |
CCAGAAAGCCTGGATTAAAA+AGG | - | chr1.3:79435120-79435139 | None:intergenic | 40.0% | |
CTAAGAGGATGGATGTTGTA+TGG | + | chr1.3:79436573-79436592 | MS.gene046157:CDS | 40.0% | |
GAAGAAGAATCAAGGGAACT+TGG | + | chr1.3:79434598-79434617 | MS.gene046157:intron | 40.0% | |
GATTGAGTACAAAGAATGGG+AGG | + | chr1.3:79435835-79435854 | MS.gene046157:intron | 40.0% | |
GCTAATGAAGTTTGGGAAGA+AGG | - | chr1.3:79435532-79435551 | None:intergenic | 40.0% | |
GCTTTATACTCGTATTGCGT+TGG | + | chr1.3:79436250-79436269 | MS.gene046157:CDS | 40.0% | |
GTCATTCTTGTAAAGCATGC+CGG | + | chr1.3:79435891-79435910 | MS.gene046157:intron | 40.0% | |
GTGAGCAGAATATGGTGTTT+CGG | + | chr1.3:79435615-79435634 | MS.gene046157:intron | 40.0% | |
TAAAGTTACTGTGCGGTTAC+AGG | + | chr1.3:79435974-79435993 | MS.gene046157:intron | 40.0% | |
TCATTCTTGTAAAGCATGCC+GGG | + | chr1.3:79435892-79435911 | MS.gene046157:intron | 40.0% | |
TCTCAATTATGTGTGCAGAG+AGG | + | chr1.3:79436152-79436171 | MS.gene046157:intron | 40.0% | |
TGCTCAGAACTGCATTTGTT+GGG | + | chr1.3:79437417-79437436 | MS.gene046157:CDS | 40.0% | |
TGTACATAGCTCAAACTCGA+TGG | + | chr1.3:79436981-79437000 | MS.gene046157:intron | 40.0% | |
TTGCTCAGAACTGCATTTGT+TGG | + | chr1.3:79437416-79437435 | MS.gene046157:CDS | 40.0% | |
! | AACATAAGGATGGAGGGTTT+TGG | - | chr1.3:79436875-79436894 | None:intergenic | 40.0% |
! | AATATTTTGCGGTCTCCTGT+TGG | + | chr1.3:79437600-79437619 | MS.gene046157:CDS | 40.0% |
! | ACCCTCCATCCTTATGTTTT+TGG | + | chr1.3:79436877-79436896 | MS.gene046157:intron | 40.0% |
! | CCTTTTTAATCCAGGCTTTC+TGG | + | chr1.3:79435117-79435136 | MS.gene046157:intron | 40.0% |
! | GATTCTGATTCTGGTGATGT+TGG | + | chr1.3:79437530-79437549 | MS.gene046157:intron | 40.0% |
! | GTGTACAACTTTTCCTACAG+TGG | + | chr1.3:79436174-79436193 | MS.gene046157:CDS | 40.0% |
! | GTGTTTCGGAACTGTTTTCT+TGG | + | chr1.3:79435629-79435648 | MS.gene046157:intron | 40.0% |
! | TAAGCTTTATGATGGAGGGA+GGG | + | chr1.3:79435375-79435394 | MS.gene046157:intron | 40.0% |
! | TTAAGCTTTATGATGGAGGG+AGG | + | chr1.3:79435374-79435393 | MS.gene046157:intron | 40.0% |
! | TTCGGAACTGTTTTCTTGGT+TGG | + | chr1.3:79435633-79435652 | MS.gene046157:intron | 40.0% |
!! | GATGACGGAAAAATTATGCG+TGG | - | chr1.3:79436343-79436362 | None:intergenic | 40.0% |
!! | GTTTGGGAGTTTGATTTTGG+AGG | + | chr1.3:79436709-79436728 | MS.gene046157:intron | 40.0% |
!! | GTTTTCTTGGTTGGTGTTTG+AGG | + | chr1.3:79435642-79435661 | MS.gene046157:intron | 40.0% |
!! | TGGCTGCTATTTCTTTACAC+TGG | + | chr1.3:79435025-79435044 | MS.gene046157:CDS | 40.0% |
!! | TGGTGCTATTATGAGCCATT+TGG | + | chr1.3:79437034-79437053 | MS.gene046157:intron | 40.0% |
!!! | GTTTGTTTTTGAGGCTTTGG+TGG | + | chr1.3:79435593-79435612 | MS.gene046157:intron | 40.0% |
ACTCACAAGGGCCATTATCA+TGG | - | chr1.3:79436022-79436041 | None:intergenic | 45.0% | |
AGGGTTTGAAGACTGTACCA+TGG | - | chr1.3:79435100-79435119 | None:intergenic | 45.0% | |
CAATAGTTTGAGCTATGCGC+GGG | + | chr1.3:79436920-79436939 | MS.gene046157:intron | 45.0% | |
CCAATAGTTTGAGCTATGCG+CGG | + | chr1.3:79436919-79436938 | MS.gene046157:intron | 45.0% | |
CTAAGATCTTGGGTTTGGGA+GGG | + | chr1.3:79434863-79434882 | MS.gene046157:CDS | 45.0% | |
GGGTGTTAAACAGACAAAGC+AGG | - | chr1.3:79436365-79436384 | None:intergenic | 45.0% | |
TACTCGTATTGCGTTGGGAA+AGG | + | chr1.3:79436256-79436275 | MS.gene046157:CDS | 45.0% | |
TCGAATTCACCATCAGTGAC+AGG | + | chr1.3:79434629-79434648 | MS.gene046157:intron | 45.0% | |
TGCGCGGGACTAAAATCATT+TGG | + | chr1.3:79436935-79436954 | MS.gene046157:intron | 45.0% | |
TGGGTGCTCAAGAGCAATTA+TGG | + | chr1.3:79435399-79435418 | MS.gene046157:intron | 45.0% | |
TGTGAGTAACGGTAGTTGAG+AGG | + | chr1.3:79437163-79437182 | MS.gene046157:intron | 45.0% | |
TGTTCAGCTCAAGGTCAAAG+AGG | + | chr1.3:79434369-79434388 | MS.gene046157:CDS | 45.0% | |
TTCCCAAGTGAGACTCACAA+GGG | - | chr1.3:79436034-79436053 | None:intergenic | 45.0% | |
TTCTTCTTCCTCTGATGCCT+AGG | - | chr1.3:79434587-79434606 | None:intergenic | 45.0% | |
TTGTAAAGCATGCCGGGATA+GGG | + | chr1.3:79435898-79435917 | MS.gene046157:intron | 45.0% | |
TTGTGTGTGTGTGTGTGTGT+GGG | - | chr1.3:79434743-79434762 | None:intergenic | 45.0% | |
TTTCCCAAGTGAGACTCACA+AGG | - | chr1.3:79436035-79436054 | None:intergenic | 45.0% | |
! | CAGGGATTTGAGGCATATGT+CGG | + | chr1.3:79437386-79437405 | MS.gene046157:intron | 45.0% |
! | CGAGAGGCACGAACATTAAT+TGG | - | chr1.3:79434343-79434362 | None:intergenic | 45.0% |
! | GCTCAGAACTGCATTTGTTG+GGG | + | chr1.3:79437418-79437437 | MS.gene046157:CDS | 45.0% |
! | GTCCAAGCTTTTCCAAGTTC+AGG | - | chr1.3:79437332-79437351 | None:intergenic | 45.0% |
! | TCTAAGATCTTGGGTTTGGG+AGG | + | chr1.3:79434862-79434881 | MS.gene046157:CDS | 45.0% |
! | TGTTGGTTGTCATGGCCATT+GGG | + | chr1.3:79437617-79437636 | MS.gene046157:CDS | 45.0% |
! | TTTATGATGGAGGGAGGGTT+GGG | + | chr1.3:79435380-79435399 | MS.gene046157:intron | 45.0% |
!! | ATAAGGATGGAGGGTTTTGG+AGG | - | chr1.3:79436872-79436891 | None:intergenic | 45.0% |
!! | CTTAGAATGAGAAGTGCTGC+TGG | - | chr1.3:79434848-79434867 | None:intergenic | 45.0% |
!! | CTTTGGTGGTGAGCAGAATA+TGG | + | chr1.3:79435607-79435626 | MS.gene046157:intron | 45.0% |
!! | GAAGTGCTGCTGGAAAAAAC+AGG | - | chr1.3:79434838-79434857 | None:intergenic | 45.0% |
!!! | TAAGGATGGAGGGTTTTGGA+GGG | - | chr1.3:79436871-79436890 | None:intergenic | 45.0% |
!!! | ATAATAATAACTTAAATTTT+AGG | - | chr1.3:79434502-79434521 | None:intergenic | 5.0% |
ACCAGACTGCGCAAAAAAGC+AGG | + | chr1.3:79436065-79436084 | MS.gene046157:CDS | 50.0% | |
ACTACATGCCTAGGCATCAG+AGG | + | chr1.3:79434576-79434595 | MS.gene046157:intron | 50.0% | |
AGTTACTGTGCGGTTACAGG+TGG | + | chr1.3:79435977-79435996 | MS.gene046157:intron | 50.0% | |
CAATGGCCATGACAACCAAC+AGG | - | chr1.3:79437618-79437637 | None:intergenic | 50.0% | |
CCGCGCATAGCTCAAACTAT+TGG | - | chr1.3:79436922-79436941 | None:intergenic | 50.0% | |
CTTGCATCATAGCCCACTGT+AGG | - | chr1.3:79436190-79436209 | None:intergenic | 50.0% | |
CTTGTAAAGCATGCCGGGAT+AGG | + | chr1.3:79435897-79435916 | MS.gene046157:intron | 50.0% | |
GTGTGTGGGCATCAGCAATA+AGG | - | chr1.3:79434729-79434748 | None:intergenic | 50.0% | |
GTTGTATGGGGAGAAACAGC+TGG | + | chr1.3:79436587-79436606 | MS.gene046157:CDS | 50.0% | |
GTTGTGTGTGTGTGTGTGTG+TGG | - | chr1.3:79434744-79434763 | None:intergenic | 50.0% | |
TAATGTTCGTGCCTCTCGCA+AGG | + | chr1.3:79434345-79434364 | MS.gene046157:CDS | 50.0% | |
TCGCAAGGATGTTCAGCTCA+AGG | + | chr1.3:79434360-79434379 | MS.gene046157:CDS | 50.0% | |
TGTAAAGCATGCCGGGATAG+GGG | + | chr1.3:79435899-79435918 | MS.gene046157:intron | 50.0% | |
TTCACCATCAGTGACAGGCA+TGG | + | chr1.3:79434634-79434653 | MS.gene046157:intron | 50.0% | |
TTGTTGGGGTGGCTTCTGAA+TGG | + | chr1.3:79437432-79437451 | MS.gene046157:CDS | 50.0% | |
! | CAGAACTGCATTTGTTGGGG+TGG | + | chr1.3:79437421-79437440 | MS.gene046157:CDS | 50.0% |
! | CTGTTGGTTGTCATGGCCAT+TGG | + | chr1.3:79437616-79437635 | MS.gene046157:CDS | 50.0% |
! | CTTTATGATGGAGGGAGGGT+TGG | + | chr1.3:79435379-79435398 | MS.gene046157:intron | 50.0% |
!! | CTACAGTGGGCTATGATGCA+AGG | + | chr1.3:79436188-79436207 | MS.gene046157:CDS | 50.0% |
!!! | AAGGATGGAGGGTTTTGGAG+GGG | - | chr1.3:79436870-79436889 | None:intergenic | 50.0% |
!!! | ACCTGCTTTTTTGCGCAGTC+TGG | - | chr1.3:79436069-79436088 | None:intergenic | 50.0% |
!!! | GCGTGATCATTTTTCAGGCC+TGG | + | chr1.3:79435005-79435024 | MS.gene046157:intron | 50.0% |
ATGGGGAGAAACAGCTGGTG+TGG | + | chr1.3:79436592-79436611 | MS.gene046157:CDS | 55.0% | |
GAGCTGAACATCCTTGCGAG+AGG | - | chr1.3:79434359-79434378 | None:intergenic | 55.0% | |
GGAGAAACAGCTGGTGTGGA+TGG | + | chr1.3:79436596-79436615 | MS.gene046157:CDS | 55.0% | |
GGCCCTTGTGAGTCTCACTT+GGG | + | chr1.3:79436029-79436048 | MS.gene046157:CDS | 55.0% | |
GTAAAGCATGCCGGGATAGG+GGG | + | chr1.3:79435900-79435919 | MS.gene046157:intron | 55.0% | |
GTGACCATGCCTGTCACTGA+TGG | - | chr1.3:79434641-79434660 | None:intergenic | 55.0% | |
TGGCCCTTGTGAGTCTCACT+TGG | + | chr1.3:79436028-79436047 | MS.gene046157:CDS | 55.0% | |
TGGGACACAGCAACCACAGT+TGG | - | chr1.3:79436622-79436641 | None:intergenic | 55.0% | |
! | CGGTCTCCTGTTGGTTGTCA+TGG | + | chr1.3:79437609-79437628 | MS.gene046157:CDS | 55.0% |
!!! | ATGGAGGGTTTTGGAGGGGA+GGG | - | chr1.3:79436866-79436885 | None:intergenic | 55.0% |
CTGGTGTGGATGGCCAACTG+TGG | + | chr1.3:79436606-79436625 | MS.gene046157:CDS | 60.0% | |
TGGGGTGGCTTCTGAATGGC+AGG | + | chr1.3:79437436-79437455 | MS.gene046157:CDS | 60.0% | |
!!! | GATGGAGGGTTTTGGAGGGG+AGG | - | chr1.3:79436867-79436886 | None:intergenic | 60.0% |
ATGCCGGGATAGGGGGAGAG+CGG | + | chr1.3:79435907-79435926 | MS.gene046157:intron | 65.0% | |
TCTCCGCTCTCCCCCTATCC+CGG | - | chr1.3:79435913-79435932 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 79434328 | 79437686 | 79434328 | ID=MS.gene046157 |
chr1.3 | mRNA | 79434328 | 79437686 | 79434328 | ID=MS.gene046157.t1;Parent=MS.gene046157 |
chr1.3 | exon | 79434328 | 79434408 | 79434328 | ID=MS.gene046157.t1.exon1;Parent=MS.gene046157.t1 |
chr1.3 | CDS | 79434328 | 79434408 | 79434328 | ID=cds.MS.gene046157.t1;Parent=MS.gene046157.t1 |
chr1.3 | exon | 79434815 | 79434919 | 79434815 | ID=MS.gene046157.t1.exon2;Parent=MS.gene046157.t1 |
chr1.3 | CDS | 79434815 | 79434919 | 79434815 | ID=cds.MS.gene046157.t1;Parent=MS.gene046157.t1 |
chr1.3 | exon | 79435022 | 79435101 | 79435022 | ID=MS.gene046157.t1.exon3;Parent=MS.gene046157.t1 |
chr1.3 | CDS | 79435022 | 79435101 | 79435022 | ID=cds.MS.gene046157.t1;Parent=MS.gene046157.t1 |
chr1.3 | exon | 79435996 | 79436086 | 79435996 | ID=MS.gene046157.t1.exon4;Parent=MS.gene046157.t1 |
chr1.3 | CDS | 79435996 | 79436086 | 79435996 | ID=cds.MS.gene046157.t1;Parent=MS.gene046157.t1 |
chr1.3 | exon | 79436170 | 79436277 | 79436170 | ID=MS.gene046157.t1.exon5;Parent=MS.gene046157.t1 |
chr1.3 | CDS | 79436170 | 79436277 | 79436170 | ID=cds.MS.gene046157.t1;Parent=MS.gene046157.t1 |
chr1.3 | exon | 79436572 | 79436658 | 79436572 | ID=MS.gene046157.t1.exon6;Parent=MS.gene046157.t1 |
chr1.3 | CDS | 79436572 | 79436658 | 79436572 | ID=cds.MS.gene046157.t1;Parent=MS.gene046157.t1 |
chr1.3 | exon | 79437389 | 79437457 | 79437389 | ID=MS.gene046157.t1.exon7;Parent=MS.gene046157.t1 |
chr1.3 | CDS | 79437389 | 79437457 | 79437389 | ID=cds.MS.gene046157.t1;Parent=MS.gene046157.t1 |
chr1.3 | exon | 79437564 | 79437686 | 79437564 | ID=MS.gene046157.t1.exon8;Parent=MS.gene046157.t1 |
chr1.3 | CDS | 79437564 | 79437686 | 79437564 | ID=cds.MS.gene046157.t1;Parent=MS.gene046157.t1 |
Gene Sequence |
Protein sequence |