Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90119.t1 | XP_003592828.1 | 93.7 | 222 | 12 | 1 | 1 | 220 | 112 | 333 | 2.40E-116 | 428.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90119.t1 | Q54IK2 | 32.4 | 250 | 148 | 6 | 1 | 241 | 131 | 368 | 4.6e-28 | 126.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90119.t1 | G7IAZ3 | 93.7 | 222 | 12 | 1 | 1 | 220 | 112 | 333 | 1.7e-116 | 428.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene90119 | 0.804536 | 2.06E-49 | -1.69E-46 |
| MS.gene049230 | MS.gene90119 | 0.839664 | 1.38E-57 | -1.69E-46 |
| MS.gene049378 | MS.gene90119 | 0.81199 | 5.31E-51 | -1.69E-46 |
| MS.gene049438 | MS.gene90119 | 0.824127 | 9.55E-54 | -1.69E-46 |
| MS.gene04984 | MS.gene90119 | 0.802933 | 4.43E-49 | -1.69E-46 |
| MS.gene049861 | MS.gene90119 | 0.805554 | 1.26E-49 | -1.69E-46 |
| MS.gene04991 | MS.gene90119 | -0.830393 | 3.01E-55 | -1.69E-46 |
| MS.gene050114 | MS.gene90119 | 0.817962 | 2.51E-52 | -1.69E-46 |
| MS.gene050288 | MS.gene90119 | 0.801125 | 1.04E-48 | -1.69E-46 |
| MS.gene050317 | MS.gene90119 | 0.819996 | 8.66E-53 | -1.69E-46 |
| MS.gene050654 | MS.gene90119 | 0.801239 | 9.89E-49 | -1.69E-46 |
| MS.gene050941 | MS.gene90119 | 0.833477 | 5.21E-56 | -1.69E-46 |
| MS.gene051122 | MS.gene90119 | 0.806551 | 7.79E-50 | -1.69E-46 |
| MS.gene051184 | MS.gene90119 | 0.809272 | 2.05E-50 | -1.69E-46 |
| MS.gene051452 | MS.gene90119 | 0.82375 | 1.17E-53 | -1.69E-46 |
| MS.gene051655 | MS.gene90119 | 0.824732 | 6.88E-54 | -1.69E-46 |
| MS.gene052434 | MS.gene90119 | 0.807703 | 4.44E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene90119 | 0.811556 | 6.60E-51 | -1.69E-46 |
| MS.gene053381 | MS.gene90119 | 0.816273 | 6.02E-52 | -1.69E-46 |
| MS.gene05344 | MS.gene90119 | -0.838922 | 2.16E-57 | -1.69E-46 |
| MS.gene053963 | MS.gene90119 | 0.808855 | 2.52E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene90119 | 0.834958 | 2.22E-56 | -1.69E-46 |
| MS.gene055442 | MS.gene90119 | 0.800369 | 1.49E-48 | -1.69E-46 |
| MS.gene055603 | MS.gene90119 | 0.824388 | 8.29E-54 | -1.69E-46 |
| MS.gene055701 | MS.gene90119 | 0.808688 | 2.74E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene90119 | 0.830473 | 2.88E-55 | -1.69E-46 |
| MS.gene056849 | MS.gene90119 | 0.834482 | 2.92E-56 | -1.69E-46 |
| MS.gene056986 | MS.gene90119 | 0.821519 | 3.87E-53 | -1.69E-46 |
| MS.gene057055 | MS.gene90119 | 0.814024 | 1.90E-51 | -1.69E-46 |
| MS.gene05761 | MS.gene90119 | 0.823129 | 1.64E-53 | -1.69E-46 |
| MS.gene058429 | MS.gene90119 | 0.807621 | 4.62E-50 | -1.69E-46 |
| MS.gene058503 | MS.gene90119 | 0.803076 | 4.14E-49 | -1.69E-46 |
| MS.gene058654 | MS.gene90119 | 0.80246 | 5.55E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene90119 | 0.817845 | 2.67E-52 | -1.69E-46 |
| MS.gene059360 | MS.gene90119 | 0.825926 | 3.59E-54 | -1.69E-46 |
| MS.gene059830 | MS.gene90119 | 0.809953 | 1.47E-50 | -1.69E-46 |
| MS.gene059872 | MS.gene90119 | -0.815155 | 1.07E-51 | -1.69E-46 |
| MS.gene059952 | MS.gene90119 | 0.809221 | 2.11E-50 | -1.69E-46 |
| MS.gene060084 | MS.gene90119 | 0.810037 | 1.41E-50 | -1.69E-46 |
| MS.gene06010 | MS.gene90119 | 0.827828 | 1.26E-54 | -1.69E-46 |
| MS.gene06011 | MS.gene90119 | 0.846525 | 2.06E-59 | -1.69E-46 |
| MS.gene060297 | MS.gene90119 | 0.822787 | 1.97E-53 | -1.69E-46 |
| MS.gene060586 | MS.gene90119 | 0.810241 | 1.27E-50 | -1.69E-46 |
| MS.gene060851 | MS.gene90119 | 0.811431 | 7.03E-51 | -1.69E-46 |
| MS.gene060852 | MS.gene90119 | 0.811495 | 6.80E-51 | -1.69E-46 |
| MS.gene060869 | MS.gene90119 | 0.827394 | 1.60E-54 | -1.69E-46 |
| MS.gene060870 | MS.gene90119 | 0.804274 | 2.34E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene90119 | 0.81039 | 1.18E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene90119 | 0.812862 | 3.42E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90119 | MS.gene74237 | PPI |
| MS.gene90119 | MS.gene046157 | PPI |
| MS.gene90119 | MS.gene90882 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90119.t1 | MTR_1g116510 | 93.694 | 222 | 12 | 1 | 1 | 220 | 112 | 333 | 1.50e-143 | 406 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90119.t1 | AT4G10430 | 80.973 | 226 | 41 | 1 | 1 | 224 | 98 | 323 | 8.58e-137 | 389 |
| MS.gene90119.t1 | AT4G10430 | 80.973 | 226 | 41 | 1 | 1 | 224 | 98 | 323 | 8.58e-137 | 389 |
| MS.gene90119.t1 | AT1G33230 | 78.761 | 226 | 46 | 1 | 1 | 224 | 99 | 324 | 6.27e-132 | 376 |
| MS.gene90119.t1 | AT1G33230 | 78.761 | 226 | 46 | 1 | 1 | 224 | 106 | 331 | 1.50e-131 | 375 |
| MS.gene90119.t1 | AT4G10430 | 72.764 | 246 | 49 | 1 | 1 | 246 | 22 | 249 | 1.20e-127 | 362 |
| MS.gene90119.t1 | AT4G10430 | 80.488 | 205 | 40 | 0 | 1 | 205 | 98 | 302 | 4.93e-123 | 352 |
| MS.gene90119.t1 | AT4G10430 | 80.488 | 205 | 40 | 0 | 1 | 205 | 22 | 226 | 7.14e-123 | 349 |
| MS.gene90119.t1 | AT4G10430 | 89.130 | 184 | 20 | 0 | 1 | 184 | 98 | 281 | 1.20e-122 | 350 |
| MS.gene90119.t1 | AT4G10430 | 89.130 | 184 | 20 | 0 | 1 | 184 | 98 | 281 | 1.20e-122 | 350 |
| MS.gene90119.t1 | AT4G10430 | 89.130 | 184 | 20 | 0 | 1 | 184 | 98 | 281 | 1.20e-122 | 350 |
| MS.gene90119.t1 | AT4G10430 | 89.130 | 184 | 20 | 0 | 1 | 184 | 98 | 281 | 1.20e-122 | 350 |
Find 62 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGTAAAGTCAAGATTTA+AGG | 0.208316 | 1.4:+88387287 | MS.gene90119:CDS |
| CGAGAGGCACGAACATTAAT+TGG | 0.209868 | 1.4:-88383961 | None:intergenic |
| CACTTCTCATTCTAAGATCT+TGG | 0.270929 | 1.4:+88384471 | MS.gene90119:CDS |
| TCATTCTAAGATCTTGGGTT+TGG | 0.289517 | 1.4:+88384477 | MS.gene90119:CDS |
| GAGAACATATTGAGAGTAAA+TGG | 0.297201 | 1.4:+88384680 | MS.gene90119:CDS |
| CATTCTAAGATCTTGGGTTT+GGG | 0.313165 | 1.4:+88384478 | MS.gene90119:CDS |
| TGCTCAGAACTGCATTTGTT+GGG | 0.327140 | 1.4:+88387038 | MS.gene90119:CDS |
| TACCTGCAATATGAAAAGTA+TGG | 0.346359 | 1.4:-88386258 | None:intergenic |
| AAGAGGAATACAACAGTTAC+AGG | 0.348052 | 1.4:+88384007 | MS.gene90119:CDS |
| TCATTATTGTGCCATGATAA+TGG | 0.352720 | 1.4:+88385627 | MS.gene90119:CDS |
| GCTATTTCTTTACACTGGTT+TGG | 0.353138 | 1.4:+88384649 | MS.gene90119:CDS |
| AGTCTCACTTGGGAAATAAA+AGG | 0.361860 | 1.4:+88385658 | MS.gene90119:CDS |
| GAAGAGTTAATATCATTATA+AGG | 0.392084 | 1.4:-88387190 | None:intergenic |
| TTGCTCAGAACTGCATTTGT+TGG | 0.406680 | 1.4:+88387037 | MS.gene90119:CDS |
| ACTTCTCATTCTAAGATCTT+GGG | 0.408886 | 1.4:+88384472 | MS.gene90119:CDS |
| CGGTCTCCTGTTGGTTGTCA+TGG | 0.422234 | 1.4:+88387230 | MS.gene90119:CDS |
| CTAAGAGGATGGATGTTGTA+TGG | 0.431027 | 1.4:+88386192 | MS.gene90119:CDS |
| CTGTTGGTTGTCATGGCCAT+TGG | 0.440508 | 1.4:+88387237 | MS.gene90119:CDS |
| CTTTATACTCGTATTGCGTT+GGG | 0.451111 | 1.4:+88385870 | MS.gene90119:CDS |
| TGTTGGTTGTCATGGCCATT+GGG | 0.457433 | 1.4:+88387238 | MS.gene90119:CDS |
| CAGAACTGCATTTGTTGGGG+TGG | 0.458831 | 1.4:+88387042 | MS.gene90119:CDS |
| AGTACCTGGTAAATCTGTAC+TGG | 0.468262 | 1.4:-88384521 | None:intergenic |
| GCTTTATACTCGTATTGCGT+TGG | 0.475449 | 1.4:+88385869 | MS.gene90119:CDS |
| TCTTTGAATTATAGGCTAAG+AGG | 0.476272 | 1.4:+88386177 | MS.gene90119:intron |
| TGGGGTGGCTTCTGAATGGC+AGG | 0.477673 | 1.4:+88387057 | MS.gene90119:CDS |
| CTTAGAATGAGAAGTGCTGC+TGG | 0.479516 | 1.4:-88384464 | None:intergenic |
| TGGCCCTTGTGAGTCTCACT+TGG | 0.486035 | 1.4:+88385647 | MS.gene90119:CDS |
| TGGCTGCTATTTCTTTACAC+TGG | 0.488932 | 1.4:+88384644 | MS.gene90119:CDS |
| TCTAAGATCTTGGGTTTGGG+AGG | 0.490954 | 1.4:+88384481 | MS.gene90119:CDS |
| CTAAGATCTTGGGTTTGGGA+GGG | 0.495096 | 1.4:+88384482 | MS.gene90119:CDS |
| TTGTTGGGGTGGCTTCTGAA+TGG | 0.501334 | 1.4:+88387053 | MS.gene90119:CDS |
| TAAGAGGATGGATGTTGTAT+GGG | 0.503535 | 1.4:+88386193 | MS.gene90119:CDS |
| TACTCGTATTGCGTTGGGAA+AGG | 0.514448 | 1.4:+88385875 | MS.gene90119:CDS |
| CAATGGCCATGACAACCAAC+AGG | 0.515846 | 1.4:-88387236 | None:intergenic |
| TATATTGGTTCAGGGATTTG+AGG | 0.518924 | 1.4:+88386997 | MS.gene90119:intron |
| ACTCACAAGGGCCATTATCA+TGG | 0.523040 | 1.4:-88385638 | None:intergenic |
| TAAATCTGTACTGGAAAAGC+TGG | 0.542899 | 1.4:-88384512 | None:intergenic |
| ACCTGCAATATGAAAAGTAT+GGG | 0.545858 | 1.4:-88386257 | None:intergenic |
| ATGATATTAACTCTTCGAGC+AGG | 0.567380 | 1.4:+88387197 | MS.gene90119:CDS |
| TCGCAAGGATGTTCAGCTCA+AGG | 0.568890 | 1.4:+88383981 | MS.gene90119:CDS |
| GCTCAGAACTGCATTTGTTG+GGG | 0.574408 | 1.4:+88387039 | MS.gene90119:CDS |
| GGAGAAACAGCTGGTGTGGA+TGG | 0.574533 | 1.4:+88386215 | MS.gene90119:CDS |
| CAGGGATTTGAGGCATATGT+CGG | 0.578726 | 1.4:+88387007 | MS.gene90119:intron |
| AAAATAGATATCAACGGCAA+AGG | 0.582391 | 1.4:+88385847 | MS.gene90119:CDS |
| TAATGTTCGTGCCTCTCGCA+AGG | 0.587007 | 1.4:+88383966 | MS.gene90119:CDS |
| CTACAGTGGGCTATGATGCA+AGG | 0.587397 | 1.4:+88385807 | MS.gene90119:CDS |
| AAATACAGTTCAGACTCTGT+TGG | 0.591274 | 1.4:+88387269 | MS.gene90119:CDS |
| TTTCCCAAGTGAGACTCACA+AGG | 0.597093 | 1.4:-88385651 | None:intergenic |
| TGGGACACAGCAACCACAGT+TGG | 0.614281 | 1.4:-88386238 | None:intergenic |
| TGAATTATAGGCTAAGAGGA+TGG | 0.614666 | 1.4:+88386181 | MS.gene90119:intron |
| CTTGCATCATAGCCCACTGT+AGG | 0.615039 | 1.4:-88385806 | None:intergenic |
| AAGAGGATGGATGTTGTATG+GGG | 0.617879 | 1.4:+88386194 | MS.gene90119:CDS |
| GTTGTATGGGGAGAAACAGC+TGG | 0.623308 | 1.4:+88386206 | MS.gene90119:CDS |
| GGCCCTTGTGAGTCTCACTT+GGG | 0.623892 | 1.4:+88385648 | MS.gene90119:CDS |
| ATGGAAGTGATATTCGTCCA+TGG | 0.625077 | 1.4:+88384699 | MS.gene90119:CDS |
| AGTGTAAAGAAATAGCAGCC+AGG | 0.633016 | 1.4:-88384642 | None:intergenic |
| ATGGGGAGAAACAGCTGGTG+TGG | 0.638330 | 1.4:+88386211 | MS.gene90119:CDS |
| AGAGGAATACAACAGTTACA+GGG | 0.648843 | 1.4:+88384008 | MS.gene90119:CDS |
| GAGCTGAACATCCTTGCGAG+AGG | 0.657636 | 1.4:-88383977 | None:intergenic |
| TGTTCAGCTCAAGGTCAAAG+AGG | 0.660588 | 1.4:+88383990 | MS.gene90119:CDS |
| CTGGTGTGGATGGCCAACTG+TGG | 0.666673 | 1.4:+88386225 | MS.gene90119:CDS |
| TTCCCAAGTGAGACTCACAA+GGG | 0.703885 | 1.4:-88385650 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATCAAAATTTGAAT+AGG | + | chr1.4:88387115-88387134 | MS.gene90119:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTACTGTT+AGG | + | chr1.4:88384074-88384093 | MS.gene90119:intron | 10.0% |
| !! | AACCATAAAATTAATATCAT+AGG | - | chr1.4:88386103-88386122 | None:intergenic | 15.0% |
| !! | ACCATAAAATTAATATCATA+GGG | - | chr1.4:88386102-88386121 | None:intergenic | 15.0% |
| !! | GTTATTATTATTAATCAAAC+TGG | + | chr1.4:88384135-88384154 | MS.gene90119:intron | 15.0% |
| !!! | ACTTAAATTTTAGGTAATTA+TGG | - | chr1.4:88384117-88384136 | None:intergenic | 15.0% |
| !!! | CTTTTCTTTTCTAAAAATTA+AGG | - | chr1.4:88386460-88386479 | None:intergenic | 15.0% |
| !! | AAAAAAATGATTAACATGCA+AGG | - | chr1.4:88384057-88384076 | None:intergenic | 20.0% |
| !! | AAAAAATGATTAACATGCAA+GGG | - | chr1.4:88384056-88384075 | None:intergenic | 20.0% |
| !! | AGACATTATTTCAATTAGTT+CGG | + | chr1.4:88384955-88384974 | MS.gene90119:intron | 20.0% |
| !! | GAAGAGTTAATATCATTATA+AGG | - | chr1.4:88387193-88387212 | None:intergenic | 20.0% |
| !! | TAAAATATACTATTTAGCAG+TGG | - | chr1.4:88385903-88385922 | None:intergenic | 20.0% |
| !! | TTATTATTAATCAAACTGGA+AGG | + | chr1.4:88384139-88384158 | MS.gene90119:intron | 20.0% |
| !!! | ATTCTCTTTTACGATAATAA+AGG | - | chr1.4:88385405-88385424 | None:intergenic | 20.0% |
| !!! | TCCCTATGATATTAATTTTA+TGG | + | chr1.4:88386098-88386117 | MS.gene90119:intron | 20.0% |
| !!! | TCTCATTTTCTTTGAATTAT+AGG | + | chr1.4:88386169-88386188 | MS.gene90119:intron | 20.0% |
| !!! | TTATTAAGTCCAAGTTTTTT+TGG | + | chr1.4:88386635-88386654 | MS.gene90119:intron | 20.0% |
| !!! | TTATTTTTTGATAAGCTGTT+TGG | + | chr1.4:88386724-88386743 | MS.gene90119:intron | 20.0% |
| !!! | TTCTCTTTTACGATAATAAA+GGG | - | chr1.4:88385404-88385423 | None:intergenic | 20.0% |
| !!! | TTGTGAAACTTTTATGAAAA+TGG | + | chr1.4:88384395-88384414 | MS.gene90119:intron | 20.0% |
| !!! | TTGTTATTGACTTTTTAACT+AGG | - | chr1.4:88384181-88384200 | None:intergenic | 20.0% |
| !!! | TTTTGCAAAATAGATATCAA+CGG | + | chr1.4:88385841-88385860 | MS.gene90119:CDS | 20.0% |
| !!! | TTTTTTTTTACTGTTAGGAA+AGG | + | chr1.4:88384079-88384098 | MS.gene90119:intron | 20.0% |
| ! | AAACAAACAGTTTCAAACAA+AGG | - | chr1.4:88385200-88385219 | None:intergenic | 25.0% |
| ! | ATAATAGCACCAAAAAAACT+TGG | - | chr1.4:88386647-88386666 | None:intergenic | 25.0% |
| ! | ATTAGATTGAGTACAAAGAA+TGG | + | chr1.4:88385450-88385469 | MS.gene90119:intron | 25.0% |
| ! | ATTATTTCAATTAGTTCGGA+CGG | + | chr1.4:88384959-88384978 | MS.gene90119:intron | 25.0% |
| ! | ATTCGCGAAAATTGAATTAT+CGG | + | chr1.4:88386904-88386923 | MS.gene90119:intron | 25.0% |
| ! | CATCAAAAAGAAAAAGCTAA+TGG | - | chr1.4:88385728-88385747 | None:intergenic | 25.0% |
| ! | CATTAAAATGATTCTGATTC+TGG | + | chr1.4:88387142-88387161 | MS.gene90119:intron | 25.0% |
| ! | CTATTTCCAATCAATATGTT+TGG | - | chr1.4:88386134-88386153 | None:intergenic | 25.0% |
| ! | CTTTGTACTCAATCTAATAT+GGG | - | chr1.4:88385448-88385467 | None:intergenic | 25.0% |
| ! | GCAATTATTCCAAAAACATA+AGG | - | chr1.4:88386510-88386529 | None:intergenic | 25.0% |
| ! | GCATATATCATGTGTTAATA+TGG | + | chr1.4:88386806-88386825 | MS.gene90119:intron | 25.0% |
| ! | GTAACTGTTTAACTCAATAT+AGG | - | chr1.4:88386699-88386718 | None:intergenic | 25.0% |
| ! | TCTTTCATAATTGCTTAAAG+AGG | + | chr1.4:88385371-88385390 | MS.gene90119:intron | 25.0% |
| ! | TCTTTGTACTCAATCTAATA+TGG | - | chr1.4:88385449-88385468 | None:intergenic | 25.0% |
| ! | TTAGATTGAGTACAAAGAAT+GGG | + | chr1.4:88385451-88385470 | MS.gene90119:intron | 25.0% |
| ! | TTATTCCAAAAACATAAGGA+TGG | - | chr1.4:88386506-88386525 | None:intergenic | 25.0% |
| !! | TATCGGATTTATTCATGTTT+TGG | + | chr1.4:88386921-88386940 | MS.gene90119:intron | 25.0% |
| !!! | ATTTTCATTCCTTGTTTACA+TGG | + | chr1.4:88385551-88385570 | MS.gene90119:intron | 25.0% |
| !!! | TTATTGACTTTTTAACTAGG+TGG | - | chr1.4:88384178-88384197 | None:intergenic | 25.0% |
| !!! | TTTGAAACTGTTTGTTTTTG+AGG | + | chr1.4:88385203-88385222 | MS.gene90119:intron | 25.0% |
| !!! | TTTTCATTCCTTGTTTACAT+GGG | + | chr1.4:88385552-88385571 | MS.gene90119:intron | 25.0% |
| !!! | TTTTGGAATAATTGCACATT+TGG | + | chr1.4:88386515-88386534 | MS.gene90119:intron | 25.0% |
| AAAAGAAAAAGCTAATGGTC+AGG | - | chr1.4:88385723-88385742 | None:intergenic | 30.0% | |
| AAAATAGATATCAACGGCAA+AGG | + | chr1.4:88385847-88385866 | MS.gene90119:CDS | 30.0% | |
| AAAGAAAAAGCTAATGGTCA+GGG | - | chr1.4:88385722-88385741 | None:intergenic | 30.0% | |
| AAATAGTGAGAAAAAGACTC+GGG | - | chr1.4:88386004-88386023 | None:intergenic | 30.0% | |
| AACATGACATGAAACAAGAT+TGG | - | chr1.4:88384557-88384576 | None:intergenic | 30.0% | |
| AACTCAATAAGTTCAGAAAC+AGG | - | chr1.4:88385287-88385306 | None:intergenic | 30.0% | |
| AATGAAGTAAAAAAGCAAGC+AGG | - | chr1.4:88387095-88387114 | None:intergenic | 30.0% | |
| ATCAAGATGTGGAATTTGAA+TGG | - | chr1.4:88384914-88384933 | None:intergenic | 30.0% | |
| CAAATAGTGAGAAAAAGACT+CGG | - | chr1.4:88386005-88386024 | None:intergenic | 30.0% | |
| CTTTCTCCAAACATATTGAT+TGG | + | chr1.4:88386125-88386144 | MS.gene90119:intron | 30.0% | |
| CTTTCTTTGTGATCCTATAT+TGG | + | chr1.4:88386982-88387001 | MS.gene90119:intron | 30.0% | |
| GAGAACATATTGAGAGTAAA+TGG | + | chr1.4:88384680-88384699 | MS.gene90119:CDS | 30.0% | |
| TACCTGCAATATGAAAAGTA+TGG | - | chr1.4:88386261-88386280 | None:intergenic | 30.0% | |
| TCATAAGTAGCCATATAGTA+TGG | - | chr1.4:88386285-88386304 | None:intergenic | 30.0% | |
| TCATTATTGTGCCATGATAA+TGG | + | chr1.4:88385627-88385646 | MS.gene90119:CDS | 30.0% | |
| TCTTTGAATTATAGGCTAAG+AGG | + | chr1.4:88386177-88386196 | MS.gene90119:intron | 30.0% | |
| TGATCCTTGTGAAACAATAA+TGG | + | chr1.4:88384774-88384793 | MS.gene90119:intron | 30.0% | |
| TGCTTCGAAATTTATTGTTC+TGG | + | chr1.4:88386859-88386878 | MS.gene90119:intron | 30.0% | |
| TTACATGGGACAAAATTGTT+TGG | + | chr1.4:88385566-88385585 | MS.gene90119:intron | 30.0% | |
| TTATTTCAATTAGTTCGGAC+GGG | + | chr1.4:88384960-88384979 | MS.gene90119:intron | 30.0% | |
| TTGCTATGCAAGATAGAAAA+AGG | - | chr1.4:88385322-88385341 | None:intergenic | 30.0% | |
| ! | AATTTTGTCCCATGTAAACA+AGG | - | chr1.4:88385563-88385582 | None:intergenic | 30.0% |
| ! | ACCTGCAATATGAAAAGTAT+GGG | - | chr1.4:88386260-88386279 | None:intergenic | 30.0% |
| ! | ATGTTTAAGCTTTATGATGG+AGG | + | chr1.4:88384989-88385008 | MS.gene90119:intron | 30.0% |
| ! | GCAATGTTTAAGCTTTATGA+TGG | + | chr1.4:88384986-88385005 | MS.gene90119:intron | 30.0% |
| ! | TGTTTAAGCTTTATGATGGA+GGG | + | chr1.4:88384990-88385009 | MS.gene90119:intron | 30.0% |
| !! | ACTTCTCATTCTAAGATCTT+GGG | + | chr1.4:88384472-88384491 | MS.gene90119:CDS | 30.0% |
| !! | GAACTTATTGAGTTTTTCAG+TGG | + | chr1.4:88385293-88385312 | MS.gene90119:intron | 30.0% |
| !! | TATGTTTGGGAGTTTGATTT+TGG | + | chr1.4:88386325-88386344 | MS.gene90119:intron | 30.0% |
| !! | TGTATTTTGAAAGTTCCCAA+TGG | - | chr1.4:88387256-88387275 | None:intergenic | 30.0% |
| !! | TTGGTTTAAAAGAAAGTACC+TGG | - | chr1.4:88384538-88384557 | None:intergenic | 30.0% |
| !! | TTTTGGAAATAACCTGAACT+TGG | + | chr1.4:88386938-88386957 | MS.gene90119:intron | 30.0% |
| AAAGACTGAGAACAGAATCT+AGG | - | chr1.4:88384835-88384854 | None:intergenic | 35.0% | |
| AAATACAGTTCAGACTCTGT+TGG | + | chr1.4:88387269-88387288 | MS.gene90119:CDS | 35.0% | |
| AAATGATTAACATGCAAGGG+AGG | - | chr1.4:88384053-88384072 | None:intergenic | 35.0% | |
| AAGAGGAATACAACAGTTAC+AGG | + | chr1.4:88384007-88384026 | MS.gene90119:CDS | 35.0% | |
| AATGGACCACAGTTCATTAA+CGG | + | chr1.4:88384792-88384811 | MS.gene90119:intron | 35.0% | |
| ACAAGAATGACAGTTTAAGC+TGG | - | chr1.4:88385501-88385520 | None:intergenic | 35.0% | |
| ACGAATTAAGCACATCCAAA+TGG | - | chr1.4:88386673-88386692 | None:intergenic | 35.0% | |
| AGAGGAATACAACAGTTACA+GGG | + | chr1.4:88384008-88384027 | MS.gene90119:CDS | 35.0% | |
| AGCAATAAGGTAGTCAATTG+TGG | - | chr1.4:88384337-88384356 | None:intergenic | 35.0% | |
| AGTCTCACTTGGGAAATAAA+AGG | + | chr1.4:88385658-88385677 | MS.gene90119:CDS | 35.0% | |
| ATATAAACTACCAGAAAGCC+TGG | - | chr1.4:88384749-88384768 | None:intergenic | 35.0% | |
| ATGATATTAACTCTTCGAGC+AGG | + | chr1.4:88387197-88387216 | MS.gene90119:CDS | 35.0% | |
| CAGAAAGCCTGGATTAAAAA+GGG | - | chr1.4:88384738-88384757 | None:intergenic | 35.0% | |
| CAGACATGCTAATGAAGTTT+GGG | - | chr1.4:88385158-88385177 | None:intergenic | 35.0% | |
| CATCTTGATTTATGCTTTGG+AGG | + | chr1.4:88384925-88384944 | MS.gene90119:intron | 35.0% | |
| CCAAAGCATAAATCAAGATG+TGG | - | chr1.4:88384925-88384944 | None:intergenic | 35.0% | |
| CCACATCTTGATTTATGCTT+TGG | + | chr1.4:88384922-88384941 | MS.gene90119:intron | 35.0% | |
| CTCAATCTAATATGGGATCA+CGG | - | chr1.4:88385441-88385460 | None:intergenic | 35.0% | |
| CTTTATACTCGTATTGCGTT+GGG | + | chr1.4:88385870-88385889 | MS.gene90119:CDS | 35.0% | |
| GCAATAAGGTAGTCAATTGT+GGG | - | chr1.4:88384336-88384355 | None:intergenic | 35.0% | |
| GTTTGAGCTATGTACAACTT+TGG | - | chr1.4:88386598-88386617 | None:intergenic | 35.0% | |
| TAAATCTGTACTGGAAAAGC+TGG | - | chr1.4:88384515-88384534 | None:intergenic | 35.0% | |
| TAAGAGGATGGATGTTGTAT+GGG | + | chr1.4:88386193-88386212 | MS.gene90119:CDS | 35.0% | |
| TAGCCACTTATGGTATGTTT+GGG | + | chr1.4:88386312-88386331 | MS.gene90119:intron | 35.0% | |
| TAGTCAATTGTGGGATATTG+CGG | - | chr1.4:88384327-88384346 | None:intergenic | 35.0% | |
| TATTACCCGTTAATGAACTG+TGG | - | chr1.4:88384801-88384820 | None:intergenic | 35.0% | |
| TCAAATCCCTGAACCAATAT+AGG | - | chr1.4:88386998-88387017 | None:intergenic | 35.0% | |
| TCAATAACAACTACATGCCT+GGG | + | chr1.4:88384191-88384210 | MS.gene90119:intron | 35.0% | |
| TCAATCTAATATGGGATCAC+GGG | - | chr1.4:88385440-88385459 | None:intergenic | 35.0% | |
| TCAGACATGCTAATGAAGTT+TGG | - | chr1.4:88385159-88385178 | None:intergenic | 35.0% | |
| TGAATTATAGGCTAAGAGGA+TGG | + | chr1.4:88386181-88386200 | MS.gene90119:intron | 35.0% | |
| TGATGTATGTTAGCCACTTA+TGG | + | chr1.4:88386302-88386321 | MS.gene90119:intron | 35.0% | |
| TGGCAAATAAAGTTACTGTG+CGG | + | chr1.4:88385586-88385605 | MS.gene90119:intron | 35.0% | |
| TGGTCCATTATTGTTTCACA+AGG | - | chr1.4:88384781-88384800 | None:intergenic | 35.0% | |
| TTAGCCACTTATGGTATGTT+TGG | + | chr1.4:88386311-88386330 | MS.gene90119:intron | 35.0% | |
| TTCCAAAAACATAAGGATGG+AGG | - | chr1.4:88386503-88386522 | None:intergenic | 35.0% | |
| TTGCAGGTAACCATACTATA+TGG | + | chr1.4:88386272-88386291 | MS.gene90119:intron | 35.0% | |
| ! | AAATGGCACATCTTTTGTTC+AGG | + | chr1.4:88384412-88384431 | MS.gene90119:intron | 35.0% |
| ! | AACATAAGGATGGAGGATTT+TGG | - | chr1.4:88386496-88386515 | None:intergenic | 35.0% |
| ! | ATCCTCCATCCTTATGTTTT+TGG | + | chr1.4:88386498-88386517 | MS.gene90119:intron | 35.0% |
| ! | ATGACGGAAAAATTATGCGT+GGG | - | chr1.4:88385961-88385980 | None:intergenic | 35.0% |
| ! | CTTCAAACCCTTTTTAATCC+AGG | + | chr1.4:88384728-88384747 | MS.gene90119:intron | 35.0% |
| ! | TCCCATACTTTTCATATTGC+AGG | + | chr1.4:88386256-88386275 | MS.gene90119:CDS | 35.0% |
| ! | TGATGGTGAATTCGAGAATT+CGG | - | chr1.4:88384245-88384264 | None:intergenic | 35.0% |
| ! | TGTACAACTTTTCCTACAGT+GGG | + | chr1.4:88385794-88385813 | MS.gene90119:CDS | 35.0% |
| ! | TTCGAGCAGGTAATATTTTG+CGG | + | chr1.4:88387210-88387229 | MS.gene90119:CDS | 35.0% |
| ! | TTTTCAGACACTTGATTGAG+TGG | - | chr1.4:88385086-88385105 | None:intergenic | 35.0% |
| ! | TTTTCCAGTACAGATTTACC+AGG | + | chr1.4:88384517-88384536 | MS.gene90119:CDS | 35.0% |
| !! | ATTGAGCGTGATCATTTTTC+AGG | + | chr1.4:88384619-88384638 | MS.gene90119:intron | 35.0% |
| !! | CACTTCTCATTCTAAGATCT+TGG | + | chr1.4:88384471-88384490 | MS.gene90119:CDS | 35.0% |
| !! | CATTCTAAGATCTTGGGTTT+GGG | + | chr1.4:88384478-88384497 | MS.gene90119:CDS | 35.0% |
| !! | GCATCTTTTGTTGTGAGTAA+CGG | + | chr1.4:88386773-88386792 | MS.gene90119:intron | 35.0% |
| !! | GCTATTTCTTTACACTGGTT+TGG | + | chr1.4:88384649-88384668 | MS.gene90119:CDS | 35.0% |
| !! | TATATTGGTTCAGGGATTTG+AGG | + | chr1.4:88386997-88387016 | MS.gene90119:intron | 35.0% |
| !! | TCATTCTAAGATCTTGGGTT+TGG | + | chr1.4:88384477-88384496 | MS.gene90119:CDS | 35.0% |
| !! | TGTGATCCTATATTGGTTCA+GGG | + | chr1.4:88386989-88387008 | MS.gene90119:intron | 35.0% |
| !! | TTGTGATCCTATATTGGTTC+AGG | + | chr1.4:88386988-88387007 | MS.gene90119:intron | 35.0% |
| !! | TTTGGGAGTTTGATTTTGGA+GGG | + | chr1.4:88386329-88386348 | MS.gene90119:intron | 35.0% |
| !!! | ACTGTTTGTTTTTGAGGCTT+TGG | + | chr1.4:88385209-88385228 | MS.gene90119:intron | 35.0% |
| AAACAGACAAAGCAGGATGA+CGG | - | chr1.4:88385977-88385996 | None:intergenic | 40.0% | |
| AACCTGAACTTGGAAAAGCT+TGG | + | chr1.4:88386948-88386967 | MS.gene90119:intron | 40.0% | |
| AAGAGGATGGATGTTGTATG+GGG | + | chr1.4:88386194-88386213 | MS.gene90119:CDS | 40.0% | |
| ACTCCCAAACATACCATAAG+TGG | - | chr1.4:88386318-88386337 | None:intergenic | 40.0% | |
| AGTACCTGGTAAATCTGTAC+TGG | - | chr1.4:88384524-88384543 | None:intergenic | 40.0% | |
| AGTGTAAAGAAATAGCAGCC+AGG | - | chr1.4:88384645-88384664 | None:intergenic | 40.0% | |
| AGTTTGGGAAGAAGGTTTCA+AGG | - | chr1.4:88385143-88385162 | None:intergenic | 40.0% | |
| ATGGAAGTGATATTCGTCCA+TGG | + | chr1.4:88384699-88384718 | MS.gene90119:CDS | 40.0% | |
| ATGGACCACAGTTCATTAAC+GGG | + | chr1.4:88384793-88384812 | MS.gene90119:intron | 40.0% | |
| CAATCTAATATGGGATCACG+GGG | - | chr1.4:88385439-88385458 | None:intergenic | 40.0% | |
| CCAGAAAGCCTGGATTAAAA+AGG | - | chr1.4:88384739-88384758 | None:intergenic | 40.0% | |
| CTAAGAGGATGGATGTTGTA+TGG | + | chr1.4:88386192-88386211 | MS.gene90119:CDS | 40.0% | |
| GATTGAGTACAAAGAATGGG+AGG | + | chr1.4:88385454-88385473 | MS.gene90119:intron | 40.0% | |
| GCTAATGAAGTTTGGGAAGA+AGG | - | chr1.4:88385151-88385170 | None:intergenic | 40.0% | |
| GCTTTATACTCGTATTGCGT+TGG | + | chr1.4:88385869-88385888 | MS.gene90119:CDS | 40.0% | |
| GTCAATAACAACTACATGCC+TGG | + | chr1.4:88384190-88384209 | MS.gene90119:intron | 40.0% | |
| GTCATTCTTGTAAAGCATGC+CGG | + | chr1.4:88385510-88385529 | MS.gene90119:intron | 40.0% | |
| GTGAGCAGAATATGGTGTTT+CGG | + | chr1.4:88385234-88385253 | MS.gene90119:intron | 40.0% | |
| TAAAGTTACTGTGCGGTTAC+AGG | + | chr1.4:88385593-88385612 | MS.gene90119:intron | 40.0% | |
| TCATTCTTGTAAAGCATGCC+GGG | + | chr1.4:88385511-88385530 | MS.gene90119:intron | 40.0% | |
| TCTCAATTATGTGTGCAGAG+AGG | + | chr1.4:88385771-88385790 | MS.gene90119:intron | 40.0% | |
| TGCTCAGAACTGCATTTGTT+GGG | + | chr1.4:88387038-88387057 | MS.gene90119:CDS | 40.0% | |
| TGTACATAGCTCAAACTCGA+TGG | + | chr1.4:88386602-88386621 | MS.gene90119:intron | 40.0% | |
| TTGCTCAGAACTGCATTTGT+TGG | + | chr1.4:88387037-88387056 | MS.gene90119:CDS | 40.0% | |
| ! | AATATTTTGCGGTCTCCTGT+TGG | + | chr1.4:88387221-88387240 | MS.gene90119:CDS | 40.0% |
| ! | ATAAGGATGGAGGATTTTGG+AGG | - | chr1.4:88386493-88386512 | None:intergenic | 40.0% |
| ! | CCTTTTTAATCCAGGCTTTC+TGG | + | chr1.4:88384736-88384755 | MS.gene90119:intron | 40.0% |
| ! | GATTCTGATTCTGGTGATGT+TGG | + | chr1.4:88387151-88387170 | MS.gene90119:intron | 40.0% |
| ! | GTGTACAACTTTTCCTACAG+TGG | + | chr1.4:88385793-88385812 | MS.gene90119:CDS | 40.0% |
| ! | GTGTTTCGGAACTGTTTTCT+TGG | + | chr1.4:88385248-88385267 | MS.gene90119:intron | 40.0% |
| ! | TAAGCTTTATGATGGAGGGA+GGG | + | chr1.4:88384994-88385013 | MS.gene90119:intron | 40.0% |
| ! | TAAGGATGGAGGATTTTGGA+GGG | - | chr1.4:88386492-88386511 | None:intergenic | 40.0% |
| ! | TTAAGCTTTATGATGGAGGG+AGG | + | chr1.4:88384993-88385012 | MS.gene90119:intron | 40.0% |
| ! | TTCGGAACTGTTTTCTTGGT+TGG | + | chr1.4:88385252-88385271 | MS.gene90119:intron | 40.0% |
| !! | GATGACGGAAAAATTATGCG+TGG | - | chr1.4:88385962-88385981 | None:intergenic | 40.0% |
| !! | GTTTGGGAGTTTGATTTTGG+AGG | + | chr1.4:88386328-88386347 | MS.gene90119:intron | 40.0% |
| !! | GTTTTCTTGGTTGGTGTTTG+AGG | + | chr1.4:88385261-88385280 | MS.gene90119:intron | 40.0% |
| !! | TATTGCGGTGTTATTGTGAC+AGG | - | chr1.4:88384312-88384331 | None:intergenic | 40.0% |
| !! | TGGCTGCTATTTCTTTACAC+TGG | + | chr1.4:88384644-88384663 | MS.gene90119:CDS | 40.0% |
| !! | TGGTGCTATTATGAGCCATT+TGG | + | chr1.4:88386655-88386674 | MS.gene90119:intron | 40.0% |
| !!! | GTTTGTTTTTGAGGCTTTGG+TGG | + | chr1.4:88385212-88385231 | MS.gene90119:intron | 40.0% |
| ACTCACAAGGGCCATTATCA+TGG | - | chr1.4:88385641-88385660 | None:intergenic | 45.0% | |
| AGGGTTTGAAGACTGTACCA+TGG | - | chr1.4:88384719-88384738 | None:intergenic | 45.0% | |
| CAATAGTTTGAGCTATGCGC+GGG | + | chr1.4:88386541-88386560 | MS.gene90119:intron | 45.0% | |
| CCAATAGTTTGAGCTATGCG+CGG | + | chr1.4:88386540-88386559 | MS.gene90119:intron | 45.0% | |
| CTAAGATCTTGGGTTTGGGA+GGG | + | chr1.4:88384482-88384501 | MS.gene90119:CDS | 45.0% | |
| GAGGAAGAATCAAGGGAACT+TGG | + | chr1.4:88384219-88384238 | MS.gene90119:intron | 45.0% | |
| GGCATCAGAGGAAGAATCAA+GGG | + | chr1.4:88384212-88384231 | MS.gene90119:intron | 45.0% | |
| GGGTGTTAAACAGACAAAGC+AGG | - | chr1.4:88385984-88386003 | None:intergenic | 45.0% | |
| TACTCGTATTGCGTTGGGAA+AGG | + | chr1.4:88385875-88385894 | MS.gene90119:CDS | 45.0% | |
| TCGAATTCACCATCAGTGAC+AGG | + | chr1.4:88384250-88384269 | MS.gene90119:intron | 45.0% | |
| TGCGCGGGACTAAAATCATT+TGG | + | chr1.4:88386556-88386575 | MS.gene90119:intron | 45.0% | |
| TGGGTGCTCAAGAGCAATTA+TGG | + | chr1.4:88385018-88385037 | MS.gene90119:intron | 45.0% | |
| TGTGAGTAACGGTAGTTGAG+AGG | + | chr1.4:88386784-88386803 | MS.gene90119:intron | 45.0% | |
| TGTTCAGCTCAAGGTCAAAG+AGG | + | chr1.4:88383990-88384009 | MS.gene90119:CDS | 45.0% | |
| TGTTGTGTGTGTGTGTGTGT+GGG | - | chr1.4:88384364-88384383 | None:intergenic | 45.0% | |
| TTCCCAAGTGAGACTCACAA+GGG | - | chr1.4:88385653-88385672 | None:intergenic | 45.0% | |
| TTGTAAAGCATGCCGGGATA+GGG | + | chr1.4:88385517-88385536 | MS.gene90119:intron | 45.0% | |
| TTTCCCAAGTGAGACTCACA+AGG | - | chr1.4:88385654-88385673 | None:intergenic | 45.0% | |
| ! | CAGGGATTTGAGGCATATGT+CGG | + | chr1.4:88387007-88387026 | MS.gene90119:intron | 45.0% |
| ! | CGAGAGGCACGAACATTAAT+TGG | - | chr1.4:88383964-88383983 | None:intergenic | 45.0% |
| ! | GCTCAGAACTGCATTTGTTG+GGG | + | chr1.4:88387039-88387058 | MS.gene90119:CDS | 45.0% |
| ! | GTCCAAGCTTTTCCAAGTTC+AGG | - | chr1.4:88386953-88386972 | None:intergenic | 45.0% |
| ! | TCTAAGATCTTGGGTTTGGG+AGG | + | chr1.4:88384481-88384500 | MS.gene90119:CDS | 45.0% |
| ! | TGTTGGTTGTCATGGCCATT+GGG | + | chr1.4:88387238-88387257 | MS.gene90119:CDS | 45.0% |
| ! | TTTATGATGGAGGGAGGGTT+GGG | + | chr1.4:88384999-88385018 | MS.gene90119:intron | 45.0% |
| !! | AAGGATGGAGGATTTTGGAG+GGG | - | chr1.4:88386491-88386510 | None:intergenic | 45.0% |
| !! | CTTAGAATGAGAAGTGCTGC+TGG | - | chr1.4:88384467-88384486 | None:intergenic | 45.0% |
| !! | CTTTGGTGGTGAGCAGAATA+TGG | + | chr1.4:88385226-88385245 | MS.gene90119:intron | 45.0% |
| !! | GAAGTGCTGCTGGAAAAAAC+AGG | - | chr1.4:88384457-88384476 | None:intergenic | 45.0% |
| !!! | ATAATAATAACTTAAATTTT+AGG | - | chr1.4:88384126-88384145 | None:intergenic | 5.0% |
| ACCAGACTGCGCAAAAAAGC+AGG | + | chr1.4:88385684-88385703 | MS.gene90119:CDS | 50.0% | |
| AGTTACTGTGCGGTTACAGG+TGG | + | chr1.4:88385596-88385615 | MS.gene90119:intron | 50.0% | |
| CAATGGCCATGACAACCAAC+AGG | - | chr1.4:88387239-88387258 | None:intergenic | 50.0% | |
| CCGCGCATAGCTCAAACTAT+TGG | - | chr1.4:88386543-88386562 | None:intergenic | 50.0% | |
| CTTGCATCATAGCCCACTGT+AGG | - | chr1.4:88385809-88385828 | None:intergenic | 50.0% | |
| CTTGTAAAGCATGCCGGGAT+AGG | + | chr1.4:88385516-88385535 | MS.gene90119:intron | 50.0% | |
| GGGCATCAGAGGAAGAATCA+AGG | + | chr1.4:88384211-88384230 | MS.gene90119:intron | 50.0% | |
| GTGTGTGGGCATCAGCAATA+AGG | - | chr1.4:88384350-88384369 | None:intergenic | 50.0% | |
| GTGTTGTGTGTGTGTGTGTG+TGG | - | chr1.4:88384365-88384384 | None:intergenic | 50.0% | |
| GTTGTATGGGGAGAAACAGC+TGG | + | chr1.4:88386206-88386225 | MS.gene90119:CDS | 50.0% | |
| TAATGTTCGTGCCTCTCGCA+AGG | + | chr1.4:88383966-88383985 | MS.gene90119:CDS | 50.0% | |
| TCGCAAGGATGTTCAGCTCA+AGG | + | chr1.4:88383981-88384000 | MS.gene90119:CDS | 50.0% | |
| TGATTCTTCCTCTGATGCCC+AGG | - | chr1.4:88384211-88384230 | None:intergenic | 50.0% | |
| TGTAAAGCATGCCGGGATAG+GGG | + | chr1.4:88385518-88385537 | MS.gene90119:intron | 50.0% | |
| TTCACCATCAGTGACAGGCA+TGG | + | chr1.4:88384255-88384274 | MS.gene90119:intron | 50.0% | |
| TTGTTGGGGTGGCTTCTGAA+TGG | + | chr1.4:88387053-88387072 | MS.gene90119:CDS | 50.0% | |
| ! | CAGAACTGCATTTGTTGGGG+TGG | + | chr1.4:88387042-88387061 | MS.gene90119:CDS | 50.0% |
| ! | CTGTTGGTTGTCATGGCCAT+TGG | + | chr1.4:88387237-88387256 | MS.gene90119:CDS | 50.0% |
| ! | CTTTATGATGGAGGGAGGGT+TGG | + | chr1.4:88384998-88385017 | MS.gene90119:intron | 50.0% |
| !! | ATGGAGGATTTTGGAGGGGA+GGG | - | chr1.4:88386487-88386506 | None:intergenic | 50.0% |
| !! | CTACAGTGGGCTATGATGCA+AGG | + | chr1.4:88385807-88385826 | MS.gene90119:CDS | 50.0% |
| !!! | ACCTGCTTTTTTGCGCAGTC+TGG | - | chr1.4:88385688-88385707 | None:intergenic | 50.0% |
| !!! | GCGTGATCATTTTTCAGGCC+TGG | + | chr1.4:88384624-88384643 | MS.gene90119:intron | 50.0% |
| ACTACATGCCTGGGCATCAG+AGG | + | chr1.4:88384200-88384219 | MS.gene90119:intron | 55.0% | |
| ATGGGGAGAAACAGCTGGTG+TGG | + | chr1.4:88386211-88386230 | MS.gene90119:CDS | 55.0% | |
| GAGCTGAACATCCTTGCGAG+AGG | - | chr1.4:88383980-88383999 | None:intergenic | 55.0% | |
| GGAGAAACAGCTGGTGTGGA+TGG | + | chr1.4:88386215-88386234 | MS.gene90119:CDS | 55.0% | |
| GGCCCTTGTGAGTCTCACTT+GGG | + | chr1.4:88385648-88385667 | MS.gene90119:CDS | 55.0% | |
| GTAAAGCATGCCGGGATAGG+GGG | + | chr1.4:88385519-88385538 | MS.gene90119:intron | 55.0% | |
| GTGACCATGCCTGTCACTGA+TGG | - | chr1.4:88384262-88384281 | None:intergenic | 55.0% | |
| TGGCCCTTGTGAGTCTCACT+TGG | + | chr1.4:88385647-88385666 | MS.gene90119:CDS | 55.0% | |
| TGGGACACAGCAACCACAGT+TGG | - | chr1.4:88386241-88386260 | None:intergenic | 55.0% | |
| ! | CGGTCTCCTGTTGGTTGTCA+TGG | + | chr1.4:88387230-88387249 | MS.gene90119:CDS | 55.0% |
| !! | GATGGAGGATTTTGGAGGGG+AGG | - | chr1.4:88386488-88386507 | None:intergenic | 55.0% |
| CTGGTGTGGATGGCCAACTG+TGG | + | chr1.4:88386225-88386244 | MS.gene90119:CDS | 60.0% | |
| TGGGGTGGCTTCTGAATGGC+AGG | + | chr1.4:88387057-88387076 | MS.gene90119:CDS | 60.0% | |
| ATGCCGGGATAGGGGGAGAG+CGG | + | chr1.4:88385526-88385545 | MS.gene90119:intron | 65.0% | |
| TCTCCGCTCTCCCCCTATCC+CGG | - | chr1.4:88385532-88385551 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 88383949 | 88387307 | 88383949 | ID=MS.gene90119 |
| chr1.4 | mRNA | 88383949 | 88387307 | 88383949 | ID=MS.gene90119.t1;Parent=MS.gene90119 |
| chr1.4 | exon | 88383949 | 88384029 | 88383949 | ID=MS.gene90119.t1.exon1;Parent=MS.gene90119.t1 |
| chr1.4 | CDS | 88383949 | 88384029 | 88383949 | ID=cds.MS.gene90119.t1;Parent=MS.gene90119.t1 |
| chr1.4 | exon | 88384434 | 88384538 | 88384434 | ID=MS.gene90119.t1.exon2;Parent=MS.gene90119.t1 |
| chr1.4 | CDS | 88384434 | 88384538 | 88384434 | ID=cds.MS.gene90119.t1;Parent=MS.gene90119.t1 |
| chr1.4 | exon | 88384641 | 88384720 | 88384641 | ID=MS.gene90119.t1.exon3;Parent=MS.gene90119.t1 |
| chr1.4 | CDS | 88384641 | 88384720 | 88384641 | ID=cds.MS.gene90119.t1;Parent=MS.gene90119.t1 |
| chr1.4 | exon | 88385615 | 88385705 | 88385615 | ID=MS.gene90119.t1.exon4;Parent=MS.gene90119.t1 |
| chr1.4 | CDS | 88385615 | 88385705 | 88385615 | ID=cds.MS.gene90119.t1;Parent=MS.gene90119.t1 |
| chr1.4 | exon | 88385789 | 88385896 | 88385789 | ID=MS.gene90119.t1.exon5;Parent=MS.gene90119.t1 |
| chr1.4 | CDS | 88385789 | 88385896 | 88385789 | ID=cds.MS.gene90119.t1;Parent=MS.gene90119.t1 |
| chr1.4 | exon | 88386191 | 88386277 | 88386191 | ID=MS.gene90119.t1.exon6;Parent=MS.gene90119.t1 |
| chr1.4 | CDS | 88386191 | 88386277 | 88386191 | ID=cds.MS.gene90119.t1;Parent=MS.gene90119.t1 |
| chr1.4 | exon | 88387010 | 88387078 | 88387010 | ID=MS.gene90119.t1.exon7;Parent=MS.gene90119.t1 |
| chr1.4 | CDS | 88387010 | 88387078 | 88387010 | ID=cds.MS.gene90119.t1;Parent=MS.gene90119.t1 |
| chr1.4 | exon | 88387185 | 88387307 | 88387185 | ID=MS.gene90119.t1.exon8;Parent=MS.gene90119.t1 |
| chr1.4 | CDS | 88387185 | 88387307 | 88387185 | ID=cds.MS.gene90119.t1;Parent=MS.gene90119.t1 |
| Gene Sequence |
| Protein sequence |
