Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90882.t1 | XP_003592828.1 | 94.1 | 253 | 13 | 1 | 6 | 256 | 81 | 333 | 1.70E-134 | 488.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90882.t1 | Q54IK2 | 32.8 | 253 | 149 | 6 | 34 | 277 | 128 | 368 | 2.8e-29 | 130.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90882.t1 | G7IAZ3 | 94.1 | 253 | 13 | 1 | 6 | 256 | 81 | 333 | 1.2e-134 | 488.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene90882 | 0.834263 | 3.32E-56 | -1.69E-46 |
| MS.gene049378 | MS.gene90882 | 0.800578 | 1.35E-48 | -1.69E-46 |
| MS.gene04984 | MS.gene90882 | 0.824564 | 7.54E-54 | -1.69E-46 |
| MS.gene049861 | MS.gene90882 | 0.812425 | 4.27E-51 | -1.69E-46 |
| MS.gene04991 | MS.gene90882 | -0.832292 | 1.03E-55 | -1.69E-46 |
| MS.gene050114 | MS.gene90882 | 0.810808 | 9.59E-51 | -1.69E-46 |
| MS.gene050317 | MS.gene90882 | 0.84718 | 1.36E-59 | -1.69E-46 |
| MS.gene050941 | MS.gene90882 | 0.843546 | 1.31E-58 | -1.69E-46 |
| MS.gene051184 | MS.gene90882 | 0.807983 | 3.87E-50 | -1.69E-46 |
| MS.gene051452 | MS.gene90882 | 0.82174 | 3.44E-53 | -1.69E-46 |
| MS.gene051655 | MS.gene90882 | 0.822267 | 2.60E-53 | -1.69E-46 |
| MS.gene051757 | MS.gene90882 | 0.815536 | 8.79E-52 | -1.69E-46 |
| MS.gene051831 | MS.gene90882 | 0.813124 | 3.00E-51 | -1.69E-46 |
| MS.gene052434 | MS.gene90882 | 0.807603 | 4.66E-50 | -1.69E-46 |
| MS.gene053381 | MS.gene90882 | 0.83453 | 2.84E-56 | -1.69E-46 |
| MS.gene05344 | MS.gene90882 | -0.82897 | 6.69E-55 | -1.69E-46 |
| MS.gene054479 | MS.gene90882 | 0.816377 | 5.71E-52 | -1.69E-46 |
| MS.gene055603 | MS.gene90882 | 0.818465 | 1.93E-52 | -1.69E-46 |
| MS.gene056638 | MS.gene90882 | 0.806504 | 7.97E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene90882 | 0.839506 | 1.52E-57 | -1.69E-46 |
| MS.gene056849 | MS.gene90882 | 0.845739 | 3.37E-59 | -1.69E-46 |
| MS.gene056986 | MS.gene90882 | 0.821912 | 3.14E-53 | -1.69E-46 |
| MS.gene057055 | MS.gene90882 | 0.815413 | 9.36E-52 | -1.69E-46 |
| MS.gene057194 | MS.gene90882 | 0.80193 | 7.13E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene90882 | 0.808425 | 3.12E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene90882 | 0.800892 | 1.16E-48 | -1.69E-46 |
| MS.gene058278 | MS.gene90882 | 0.80945 | 1.88E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene90882 | 0.809283 | 2.04E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene90882 | 0.831613 | 1.51E-55 | -1.69E-46 |
| MS.gene059283 | MS.gene90882 | 0.808676 | 2.76E-50 | -1.69E-46 |
| MS.gene059360 | MS.gene90882 | 0.843833 | 1.10E-58 | -1.69E-46 |
| MS.gene05961 | MS.gene90882 | 0.8034 | 3.55E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene90882 | 0.816322 | 5.87E-52 | -1.69E-46 |
| MS.gene059952 | MS.gene90882 | 0.804204 | 2.42E-49 | -1.69E-46 |
| MS.gene060084 | MS.gene90882 | 0.806017 | 1.01E-49 | -1.69E-46 |
| MS.gene06010 | MS.gene90882 | 0.867251 | 1.57E-65 | -1.69E-46 |
| MS.gene06011 | MS.gene90882 | 0.847222 | 1.33E-59 | -1.69E-46 |
| MS.gene060297 | MS.gene90882 | 0.806338 | 8.63E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene90882 | 0.81225 | 4.66E-51 | -1.69E-46 |
| MS.gene060869 | MS.gene90882 | 0.839589 | 1.45E-57 | -1.69E-46 |
| MS.gene060870 | MS.gene90882 | 0.826904 | 2.10E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene74237 | MS.gene90882 | PPI |
| MS.gene90119 | MS.gene90882 | PPI |
| MS.gene046157 | MS.gene90882 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90882.t1 | MTR_1g116510 | 94.071 | 253 | 13 | 1 | 6 | 256 | 81 | 333 | 6.94e-167 | 467 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90882.t1 | AT4G10430 | 78.210 | 257 | 54 | 1 | 6 | 260 | 67 | 323 | 4.54e-153 | 431 |
| MS.gene90882.t1 | AT4G10430 | 78.210 | 257 | 54 | 1 | 6 | 260 | 67 | 323 | 4.54e-153 | 431 |
| MS.gene90882.t1 | AT1G33230 | 76.654 | 257 | 58 | 1 | 6 | 260 | 68 | 324 | 7.71e-149 | 421 |
| MS.gene90882.t1 | AT1G33230 | 76.494 | 251 | 57 | 1 | 12 | 260 | 81 | 331 | 1.76e-144 | 410 |
| MS.gene90882.t1 | AT4G10430 | 77.542 | 236 | 53 | 0 | 6 | 241 | 67 | 302 | 5.91e-139 | 394 |
| MS.gene90882.t1 | AT4G10430 | 84.651 | 215 | 33 | 0 | 6 | 220 | 67 | 281 | 1.28e-138 | 392 |
| MS.gene90882.t1 | AT4G10430 | 84.651 | 215 | 33 | 0 | 6 | 220 | 67 | 281 | 1.28e-138 | 392 |
| MS.gene90882.t1 | AT4G10430 | 84.651 | 215 | 33 | 0 | 6 | 220 | 67 | 281 | 1.28e-138 | 392 |
| MS.gene90882.t1 | AT4G10430 | 84.651 | 215 | 33 | 0 | 6 | 220 | 67 | 281 | 1.28e-138 | 392 |
| MS.gene90882.t1 | AT4G10430 | 70.787 | 267 | 60 | 1 | 16 | 282 | 1 | 249 | 2.34e-136 | 385 |
| MS.gene90882.t1 | AT4G10430 | 77.434 | 226 | 51 | 0 | 16 | 241 | 1 | 226 | 1.51e-131 | 372 |
Find 69 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGTAAAGTCAAGATTTA+AGG | 0.208316 | 1.1:+82063577 | MS.gene90882:CDS |
| CGAGAGGCACGAACATTAAT+TGG | 0.209868 | 1.1:-82060245 | None:intergenic |
| CACTTCTCATTCTAAGATCT+TGG | 0.270929 | 1.1:+82060761 | MS.gene90882:CDS |
| TCATTCTAAGATCTTGGGTT+TGG | 0.289517 | 1.1:+82060767 | MS.gene90882:CDS |
| GAGAACATATTGAGAGTAAA+TGG | 0.297201 | 1.1:+82060970 | MS.gene90882:CDS |
| CATTCTAAGATCTTGGGTTT+GGG | 0.313165 | 1.1:+82060768 | MS.gene90882:CDS |
| TGCTCAGAACTGCATTTGTT+GGG | 0.327140 | 1.1:+82063328 | MS.gene90882:CDS |
| TACCTGCAATATGAAAAGTA+TGG | 0.346359 | 1.1:-82062548 | None:intergenic |
| AAGAGGAATACAACAGTTAC+AGG | 0.348052 | 1.1:+82060291 | MS.gene90882:CDS |
| TCATTATTGTGCCATGATAA+TGG | 0.352720 | 1.1:+82061917 | MS.gene90882:CDS |
| GCTATTTCTTTACACTGGTT+TGG | 0.353138 | 1.1:+82060939 | MS.gene90882:CDS |
| AGTCTCACTTGGGAAATAAA+AGG | 0.361860 | 1.1:+82061948 | MS.gene90882:CDS |
| GATGCTTCTTACCTCCTTCC+TGG | 0.371718 | 1.1:+82060095 | MS.gene90882:CDS |
| GAAGAGTTAATATCATTATA+AGG | 0.392084 | 1.1:-82063480 | None:intergenic |
| TTGCTCAGAACTGCATTTGT+TGG | 0.406680 | 1.1:+82063327 | MS.gene90882:CDS |
| ACTTCTCATTCTAAGATCTT+GGG | 0.408886 | 1.1:+82060762 | MS.gene90882:CDS |
| GCCAGATGCATCATCGTTGA+TGG | 0.420149 | 1.1:+82060071 | MS.gene90882:CDS |
| CGGTCTCCTGTTGGTTGTCA+TGG | 0.422234 | 1.1:+82063520 | MS.gene90882:CDS |
| CTAAGAGGATGGATGTTGTA+TGG | 0.431027 | 1.1:+82062482 | MS.gene90882:CDS |
| CTGTTGGTTGTCATGGCCAT+TGG | 0.440508 | 1.1:+82063527 | MS.gene90882:CDS |
| CTTTATACTCGTATTGCGTT+GGG | 0.451111 | 1.1:+82062160 | MS.gene90882:CDS |
| CTCCTTCCTGGACGTGCTCA+AGG | 0.455792 | 1.1:+82060107 | MS.gene90882:CDS |
| TGTTGGTTGTCATGGCCATT+GGG | 0.457433 | 1.1:+82063528 | MS.gene90882:CDS |
| CAGAACTGCATTTGTTGGGG+TGG | 0.458831 | 1.1:+82063332 | MS.gene90882:CDS |
| GCCATCAACGATGATGCATC+TGG | 0.467300 | 1.1:-82060072 | None:intergenic |
| AGTACCTGGTAAATCTGTAC+TGG | 0.468262 | 1.1:-82060811 | None:intergenic |
| GCTTTATACTCGTATTGCGT+TGG | 0.475449 | 1.1:+82062159 | MS.gene90882:CDS |
| TCTTTGAATTATAGGCTAAG+AGG | 0.476272 | 1.1:+82062467 | MS.gene90882:intron |
| TGGGGTGGCTTCTGAATGGC+AGG | 0.477673 | 1.1:+82063347 | MS.gene90882:CDS |
| CTTAGAATGAGAAGTGCTGC+TGG | 0.479516 | 1.1:-82060754 | None:intergenic |
| TGGCCCTTGTGAGTCTCACT+TGG | 0.486035 | 1.1:+82061937 | MS.gene90882:CDS |
| TGGCTGCTATTTCTTTACAC+TGG | 0.488932 | 1.1:+82060934 | MS.gene90882:CDS |
| TCTAAGATCTTGGGTTTGGG+AGG | 0.490954 | 1.1:+82060771 | MS.gene90882:CDS |
| CTAAGATCTTGGGTTTGGGA+GGG | 0.495096 | 1.1:+82060772 | MS.gene90882:CDS |
| TTGTTGGGGTGGCTTCTGAA+TGG | 0.501334 | 1.1:+82063343 | MS.gene90882:CDS |
| TAAGAGGATGGATGTTGTAT+GGG | 0.503535 | 1.1:+82062483 | MS.gene90882:CDS |
| TACTCGTATTGCGTTGGGAA+AGG | 0.514448 | 1.1:+82062165 | MS.gene90882:CDS |
| CAATGGCCATGACAACCAAC+AGG | 0.515846 | 1.1:-82063526 | None:intergenic |
| TATATTGGTTCAGGGATTTG+AGG | 0.518924 | 1.1:+82063287 | MS.gene90882:intron |
| ACTCACAAGGGCCATTATCA+TGG | 0.523040 | 1.1:-82061928 | None:intergenic |
| TAAATCTGTACTGGAAAAGC+TGG | 0.542899 | 1.1:-82060802 | None:intergenic |
| ACCTGCAATATGAAAAGTAT+GGG | 0.545858 | 1.1:-82062547 | None:intergenic |
| AAGAAACCTTGAGCACGTCC+AGG | 0.552105 | 1.1:-82060113 | None:intergenic |
| ATGATATTAACTCTTCGAGC+AGG | 0.567380 | 1.1:+82063487 | MS.gene90882:CDS |
| TCGCAAGGATGTTCAGCTCA+AGG | 0.568890 | 1.1:+82060265 | MS.gene90882:CDS |
| GCTCAGAACTGCATTTGTTG+GGG | 0.574408 | 1.1:+82063329 | MS.gene90882:CDS |
| GGAGAAACAGCTGGTGTGGA+TGG | 0.574533 | 1.1:+82062505 | MS.gene90882:CDS |
| CAGGGATTTGAGGCATATGT+CGG | 0.578726 | 1.1:+82063297 | MS.gene90882:intron |
| AAAATAGATATCAACGGCAA+AGG | 0.582391 | 1.1:+82062137 | MS.gene90882:CDS |
| TAATGTTCGTGCCTCTCGCA+AGG | 0.587007 | 1.1:+82060250 | MS.gene90882:CDS |
| CTACAGTGGGCTATGATGCA+AGG | 0.587397 | 1.1:+82062097 | MS.gene90882:CDS |
| AAATACAGTTCAGACTCTGT+TGG | 0.591274 | 1.1:+82063559 | MS.gene90882:CDS |
| TTTCCCAAGTGAGACTCACA+AGG | 0.597093 | 1.1:-82061941 | None:intergenic |
| CTTGAGCACGTCCAGGAAGG+AGG | 0.605518 | 1.1:-82060106 | None:intergenic |
| TGGGACACAGCAACCACAGT+TGG | 0.614281 | 1.1:-82062528 | None:intergenic |
| TGAATTATAGGCTAAGAGGA+TGG | 0.614666 | 1.1:+82062471 | MS.gene90882:intron |
| CTTGCATCATAGCCCACTGT+AGG | 0.615039 | 1.1:-82062096 | None:intergenic |
| AAGAGGATGGATGTTGTATG+GGG | 0.617879 | 1.1:+82062484 | MS.gene90882:CDS |
| AACCTTGAGCACGTCCAGGA+AGG | 0.620130 | 1.1:-82060109 | None:intergenic |
| GTTGTATGGGGAGAAACAGC+TGG | 0.623308 | 1.1:+82062496 | MS.gene90882:CDS |
| GGCCCTTGTGAGTCTCACTT+GGG | 0.623892 | 1.1:+82061938 | MS.gene90882:CDS |
| ATGGAAGTGATATTCGTCCA+TGG | 0.625077 | 1.1:+82060989 | MS.gene90882:CDS |
| AGTGTAAAGAAATAGCAGCC+AGG | 0.633016 | 1.1:-82060932 | None:intergenic |
| ATGGGGAGAAACAGCTGGTG+TGG | 0.638330 | 1.1:+82062501 | MS.gene90882:CDS |
| AGAGGAATACAACAGTTACA+GGG | 0.648843 | 1.1:+82060292 | MS.gene90882:CDS |
| GAGCTGAACATCCTTGCGAG+AGG | 0.657636 | 1.1:-82060261 | None:intergenic |
| TGTTCAGCTCAAGGTCAAAG+AGG | 0.660588 | 1.1:+82060274 | MS.gene90882:CDS |
| CTGGTGTGGATGGCCAACTG+TGG | 0.666673 | 1.1:+82062515 | MS.gene90882:CDS |
| TTCCCAAGTGAGACTCACAA+GGG | 0.703885 | 1.1:-82061940 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAAAGAAATTGAAAA+TGG | - | chr1.1:82060009-82060028 | None:intergenic | 10.0% |
| !! | TTATATATCAAAATTTGAAT+AGG | + | chr1.1:82063405-82063424 | MS.gene90882:intron | 10.0% |
| !!! | TTTTCAATTTCTTTATTTAA+TGG | + | chr1.1:82060009-82060028 | MS.gene90882:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTACTGTT+AGG | + | chr1.1:82060359-82060378 | MS.gene90882:intron | 10.0% |
| !! | AACCATAAAATTAATATCAT+AGG | - | chr1.1:82062393-82062412 | None:intergenic | 15.0% |
| !! | ACCATAAAATTAATATCATA+GGG | - | chr1.1:82062392-82062411 | None:intergenic | 15.0% |
| !! | GTTATTATTATTAATCAAAC+TGG | + | chr1.1:82060420-82060439 | MS.gene90882:intron | 15.0% |
| !!! | ACTTAAATTTTAGGTAATTA+TGG | - | chr1.1:82060402-82060421 | None:intergenic | 15.0% |
| !!! | CTTTTCTTTTCTAAAAATTA+AGG | - | chr1.1:82062750-82062769 | None:intergenic | 15.0% |
| !! | AAAAAAATGATTAACATGCA+AGG | - | chr1.1:82060341-82060360 | None:intergenic | 20.0% |
| !! | AAAAAATGATTAACATGCAA+GGG | - | chr1.1:82060340-82060359 | None:intergenic | 20.0% |
| !! | AGACATTATTTCAATTAGTT+CGG | + | chr1.1:82061245-82061264 | MS.gene90882:intron | 20.0% |
| !! | GAAGAGTTAATATCATTATA+AGG | - | chr1.1:82063483-82063502 | None:intergenic | 20.0% |
| !! | TAAAATATACTATTTAGCAG+TGG | - | chr1.1:82062193-82062212 | None:intergenic | 20.0% |
| !! | TTATTATTAATCAAACTGGA+AGG | + | chr1.1:82060424-82060443 | MS.gene90882:intron | 20.0% |
| !!! | ATTCTCTTTTACGATAATAA+AGG | - | chr1.1:82061695-82061714 | None:intergenic | 20.0% |
| !!! | TCCCTATGATATTAATTTTA+TGG | + | chr1.1:82062388-82062407 | MS.gene90882:intron | 20.0% |
| !!! | TCTCATTTTCTTTGAATTAT+AGG | + | chr1.1:82062459-82062478 | MS.gene90882:intron | 20.0% |
| !!! | TTATTAAGTCCAAGTTTTTT+TGG | + | chr1.1:82062925-82062944 | MS.gene90882:intron | 20.0% |
| !!! | TTATTTTTTGATAAGCTGTT+TGG | + | chr1.1:82063014-82063033 | MS.gene90882:intron | 20.0% |
| !!! | TTCTCTTTTACGATAATAAA+GGG | - | chr1.1:82061694-82061713 | None:intergenic | 20.0% |
| !!! | TTGTGAAACTTTTATGAAAA+TGG | + | chr1.1:82060685-82060704 | MS.gene90882:intron | 20.0% |
| !!! | TTGTTATTGACTTTTTAACT+AGG | - | chr1.1:82060466-82060485 | None:intergenic | 20.0% |
| !!! | TTTTGCAAAATAGATATCAA+CGG | + | chr1.1:82062131-82062150 | MS.gene90882:CDS | 20.0% |
| !!! | TTTTTTTTTACTGTTAGGAA+AGG | + | chr1.1:82060364-82060383 | MS.gene90882:intron | 20.0% |
| ! | AAACAAACAGTTTCAAACAA+AGG | - | chr1.1:82061490-82061509 | None:intergenic | 25.0% |
| ! | ATAATAGCACCAAAAAAACT+TGG | - | chr1.1:82062937-82062956 | None:intergenic | 25.0% |
| ! | ATTAGATTGAGTACAAAGAA+TGG | + | chr1.1:82061740-82061759 | MS.gene90882:intron | 25.0% |
| ! | ATTATTTCAATTAGTTCGGA+CGG | + | chr1.1:82061249-82061268 | MS.gene90882:intron | 25.0% |
| ! | ATTCGCGAAAATTGAATTAT+CGG | + | chr1.1:82063194-82063213 | MS.gene90882:intron | 25.0% |
| ! | CATCAAAAAGAAAAAGCTAA+TGG | - | chr1.1:82062018-82062037 | None:intergenic | 25.0% |
| ! | CATTAAAATGATTCTGATTC+TGG | + | chr1.1:82063432-82063451 | MS.gene90882:intron | 25.0% |
| ! | CTATTTCCAATCAATATGTT+TGG | - | chr1.1:82062424-82062443 | None:intergenic | 25.0% |
| ! | CTTTGTACTCAATCTAATAT+GGG | - | chr1.1:82061738-82061757 | None:intergenic | 25.0% |
| ! | GCAATTATTCCAAAAACATA+AGG | - | chr1.1:82062800-82062819 | None:intergenic | 25.0% |
| ! | GCATATATCATGTGTTAATA+TGG | + | chr1.1:82063096-82063115 | MS.gene90882:intron | 25.0% |
| ! | GTAACTGTTTAACTCAATAT+AGG | - | chr1.1:82062989-82063008 | None:intergenic | 25.0% |
| ! | TCTTTCATAATTGCTTAAAG+AGG | + | chr1.1:82061661-82061680 | MS.gene90882:intron | 25.0% |
| ! | TCTTTGTACTCAATCTAATA+TGG | - | chr1.1:82061739-82061758 | None:intergenic | 25.0% |
| ! | TTAGATTGAGTACAAAGAAT+GGG | + | chr1.1:82061741-82061760 | MS.gene90882:intron | 25.0% |
| ! | TTATTCCAAAAACATAAGGA+TGG | - | chr1.1:82062796-82062815 | None:intergenic | 25.0% |
| !! | TATCGGATTTATTCATGTTT+TGG | + | chr1.1:82063211-82063230 | MS.gene90882:intron | 25.0% |
| !!! | ATTTTCATTCCTTGTTTACA+TGG | + | chr1.1:82061841-82061860 | MS.gene90882:intron | 25.0% |
| !!! | TTATTGACTTTTTAACTAGG+TGG | - | chr1.1:82060463-82060482 | None:intergenic | 25.0% |
| !!! | TTTGAAACTGTTTGTTTTTG+AGG | + | chr1.1:82061493-82061512 | MS.gene90882:intron | 25.0% |
| !!! | TTTTCATTCCTTGTTTACAT+GGG | + | chr1.1:82061842-82061861 | MS.gene90882:intron | 25.0% |
| !!! | TTTTGGAATAATTGCACATT+TGG | + | chr1.1:82062805-82062824 | MS.gene90882:intron | 25.0% |
| AAAAGAAAAAGCTAATGGTC+AGG | - | chr1.1:82062013-82062032 | None:intergenic | 30.0% | |
| AAAATAGATATCAACGGCAA+AGG | + | chr1.1:82062137-82062156 | MS.gene90882:CDS | 30.0% | |
| AAAGAAAAAGCTAATGGTCA+GGG | - | chr1.1:82062012-82062031 | None:intergenic | 30.0% | |
| AAATAGTGAGAAAAAGACTC+GGG | - | chr1.1:82062294-82062313 | None:intergenic | 30.0% | |
| AACATGACATGAAACAAGAT+TGG | - | chr1.1:82060847-82060866 | None:intergenic | 30.0% | |
| AACTCAATAAGTTCAGAAAC+AGG | - | chr1.1:82061577-82061596 | None:intergenic | 30.0% | |
| AATGAAGTAAAAAAGCAAGC+AGG | - | chr1.1:82063385-82063404 | None:intergenic | 30.0% | |
| ATATAAACTACCAGAAATCC+TGG | - | chr1.1:82061039-82061058 | None:intergenic | 30.0% | |
| ATCAAGATGTGGAATTTGAA+TGG | - | chr1.1:82061204-82061223 | None:intergenic | 30.0% | |
| CAAATAGTGAGAAAAAGACT+CGG | - | chr1.1:82062295-82062314 | None:intergenic | 30.0% | |
| CAGAAATCCTGGATTAAAAA+GGG | - | chr1.1:82061028-82061047 | None:intergenic | 30.0% | |
| CATCTAACTGCGATAATAAA+CGG | - | chr1.1:82060037-82060056 | None:intergenic | 30.0% | |
| CTTTCTCCAAACATATTGAT+TGG | + | chr1.1:82062415-82062434 | MS.gene90882:intron | 30.0% | |
| CTTTCTTTGTGATCCTATAT+TGG | + | chr1.1:82063272-82063291 | MS.gene90882:intron | 30.0% | |
| GAAAATGGAGAATAAAGAGT+TGG | - | chr1.1:82059994-82060013 | None:intergenic | 30.0% | |
| GAGAACATATTGAGAGTAAA+TGG | + | chr1.1:82060970-82060989 | MS.gene90882:CDS | 30.0% | |
| TACCTGCAATATGAAAAGTA+TGG | - | chr1.1:82062551-82062570 | None:intergenic | 30.0% | |
| TCATAAGTAGCCATATAGTA+TGG | - | chr1.1:82062575-82062594 | None:intergenic | 30.0% | |
| TCATTATTGTGCCATGATAA+TGG | + | chr1.1:82061917-82061936 | MS.gene90882:CDS | 30.0% | |
| TCTTTGAATTATAGGCTAAG+AGG | + | chr1.1:82062467-82062486 | MS.gene90882:intron | 30.0% | |
| TGATCCTTGTGAAACAATAA+TGG | + | chr1.1:82061064-82061083 | MS.gene90882:intron | 30.0% | |
| TGCTTCGAAATTTATTGTTC+TGG | + | chr1.1:82063149-82063168 | MS.gene90882:intron | 30.0% | |
| TTACATGGGACAAAATTGTT+TGG | + | chr1.1:82061856-82061875 | MS.gene90882:intron | 30.0% | |
| TTATTTCAATTAGTTCGGAC+GGG | + | chr1.1:82061250-82061269 | MS.gene90882:intron | 30.0% | |
| TTGCTATGCAAGATAGAAAA+AGG | - | chr1.1:82061612-82061631 | None:intergenic | 30.0% | |
| ! | AATTTTGTCCCATGTAAACA+AGG | - | chr1.1:82061853-82061872 | None:intergenic | 30.0% |
| ! | ACCTGCAATATGAAAAGTAT+GGG | - | chr1.1:82062550-82062569 | None:intergenic | 30.0% |
| ! | ATGTTTAAGCTTTATGATGG+AGG | + | chr1.1:82061279-82061298 | MS.gene90882:intron | 30.0% |
| ! | GCAATGTTTAAGCTTTATGA+TGG | + | chr1.1:82061276-82061295 | MS.gene90882:intron | 30.0% |
| ! | TGTTTAAGCTTTATGATGGA+GGG | + | chr1.1:82061280-82061299 | MS.gene90882:intron | 30.0% |
| !! | AAGTTTCTGAGGATGTTTTT+GGG | + | chr1.1:82060221-82060240 | MS.gene90882:CDS | 30.0% |
| !! | ACTTCTCATTCTAAGATCTT+GGG | + | chr1.1:82060762-82060781 | MS.gene90882:CDS | 30.0% |
| !! | GAACTTATTGAGTTTTTCAG+TGG | + | chr1.1:82061583-82061602 | MS.gene90882:intron | 30.0% |
| !! | TAAGTTTCTGAGGATGTTTT+TGG | + | chr1.1:82060220-82060239 | MS.gene90882:CDS | 30.0% |
| !! | TATGTTTGGGAGTTTGATTT+TGG | + | chr1.1:82062615-82062634 | MS.gene90882:intron | 30.0% |
| !! | TGTATTTTGAAAGTTCCCAA+TGG | - | chr1.1:82063546-82063565 | None:intergenic | 30.0% |
| !! | TTGGTTTAAAAGAAAGTACC+TGG | - | chr1.1:82060828-82060847 | None:intergenic | 30.0% |
| !! | TTTTGGAAATAACCTGAACT+TGG | + | chr1.1:82063228-82063247 | MS.gene90882:intron | 30.0% |
| !!! | GATTTTAGAATCGAGAACAA+GGG | - | chr1.1:82059892-82059911 | None:intergenic | 30.0% |
| !!! | TGATTTTAGAATCGAGAACA+AGG | - | chr1.1:82059893-82059912 | None:intergenic | 30.0% |
| AAAGACTGAGAACAGAATCT+AGG | - | chr1.1:82061125-82061144 | None:intergenic | 35.0% | |
| AAATACAGTTCAGACTCTGT+TGG | + | chr1.1:82063559-82063578 | MS.gene90882:CDS | 35.0% | |
| AAATGATTAACATGCAAGGG+AGG | - | chr1.1:82060337-82060356 | None:intergenic | 35.0% | |
| AAGAGGAATACAACAGTTAC+AGG | + | chr1.1:82060291-82060310 | MS.gene90882:CDS | 35.0% | |
| AATGGACCACAGTTCATTAA+CGG | + | chr1.1:82061082-82061101 | MS.gene90882:intron | 35.0% | |
| ACAAGAATGACAGTTTAAGC+TGG | - | chr1.1:82061791-82061810 | None:intergenic | 35.0% | |
| ACGAATTAAGCACATCCAAA+TGG | - | chr1.1:82062963-82062982 | None:intergenic | 35.0% | |
| AGAGGAATACAACAGTTACA+GGG | + | chr1.1:82060292-82060311 | MS.gene90882:CDS | 35.0% | |
| AGCAATAAGGTAGTCAATTG+TGG | - | chr1.1:82060625-82060644 | None:intergenic | 35.0% | |
| AGTCTCACTTGGGAAATAAA+AGG | + | chr1.1:82061948-82061967 | MS.gene90882:CDS | 35.0% | |
| ATCAGAGGAAGAAGAATCAA+GGG | + | chr1.1:82060500-82060519 | MS.gene90882:intron | 35.0% | |
| ATGATATTAACTCTTCGAGC+AGG | + | chr1.1:82063487-82063506 | MS.gene90882:CDS | 35.0% | |
| CAGACATGCTAATGAAGTTT+GGG | - | chr1.1:82061448-82061467 | None:intergenic | 35.0% | |
| CATCTTGATTTATGCTTTGG+AGG | + | chr1.1:82061215-82061234 | MS.gene90882:intron | 35.0% | |
| CCAAAGCATAAATCAAGATG+TGG | - | chr1.1:82061215-82061234 | None:intergenic | 35.0% | |
| CCACATCTTGATTTATGCTT+TGG | + | chr1.1:82061212-82061231 | MS.gene90882:intron | 35.0% | |
| CCAGAAATCCTGGATTAAAA+AGG | - | chr1.1:82061029-82061048 | None:intergenic | 35.0% | |
| CTCAATCTAATATGGGATCA+CGG | - | chr1.1:82061731-82061750 | None:intergenic | 35.0% | |
| CTTTATACTCGTATTGCGTT+GGG | + | chr1.1:82062160-82062179 | MS.gene90882:CDS | 35.0% | |
| GCAATAAGGTAGTCAATTGT+GGG | - | chr1.1:82060624-82060643 | None:intergenic | 35.0% | |
| GTTTGAGCTATGTACAACTT+TGG | - | chr1.1:82062888-82062907 | None:intergenic | 35.0% | |
| TAAATCTGTACTGGAAAAGC+TGG | - | chr1.1:82060805-82060824 | None:intergenic | 35.0% | |
| TAAGAGGATGGATGTTGTAT+GGG | + | chr1.1:82062483-82062502 | MS.gene90882:CDS | 35.0% | |
| TAGCCACTTATGGTATGTTT+GGG | + | chr1.1:82062602-82062621 | MS.gene90882:intron | 35.0% | |
| TAGTCAATTGTGGGATATTG+CGG | - | chr1.1:82060615-82060634 | None:intergenic | 35.0% | |
| TATTACCCGTTAATGAACTG+TGG | - | chr1.1:82061091-82061110 | None:intergenic | 35.0% | |
| TCAAATCCCTGAACCAATAT+AGG | - | chr1.1:82063288-82063307 | None:intergenic | 35.0% | |
| TCAACCATCTTTAGCTGATA+AGG | + | chr1.1:82059959-82059978 | MS.gene90882:intron | 35.0% | |
| TCAATAACAACTACATGCCT+AGG | + | chr1.1:82060476-82060495 | MS.gene90882:intron | 35.0% | |
| TCAATCTAATATGGGATCAC+GGG | - | chr1.1:82061730-82061749 | None:intergenic | 35.0% | |
| TCAGACATGCTAATGAAGTT+TGG | - | chr1.1:82061449-82061468 | None:intergenic | 35.0% | |
| TGAATTATAGGCTAAGAGGA+TGG | + | chr1.1:82062471-82062490 | MS.gene90882:intron | 35.0% | |
| TGATGTATGTTAGCCACTTA+TGG | + | chr1.1:82062592-82062611 | MS.gene90882:intron | 35.0% | |
| TGGCAAATAAAGTTACTGTG+CGG | + | chr1.1:82061876-82061895 | MS.gene90882:intron | 35.0% | |
| TGGTCCATTATTGTTTCACA+AGG | - | chr1.1:82061071-82061090 | None:intergenic | 35.0% | |
| TTAGCCACTTATGGTATGTT+TGG | + | chr1.1:82062601-82062620 | MS.gene90882:intron | 35.0% | |
| TTCCAAAAACATAAGGATGG+AGG | - | chr1.1:82062793-82062812 | None:intergenic | 35.0% | |
| TTGCAGGTAACCATACTATA+TGG | + | chr1.1:82062562-82062581 | MS.gene90882:intron | 35.0% | |
| ! | AAATGGCACATCTTTTGTTC+AGG | + | chr1.1:82060702-82060721 | MS.gene90882:intron | 35.0% |
| ! | AACATAAGGATGGAGGATTT+TGG | - | chr1.1:82062786-82062805 | None:intergenic | 35.0% |
| ! | ATCCTCCATCCTTATGTTTT+TGG | + | chr1.1:82062788-82062807 | MS.gene90882:intron | 35.0% |
| ! | ATGACGGAAAAATTATGCGT+GGG | - | chr1.1:82062251-82062270 | None:intergenic | 35.0% |
| ! | CCTTTTTAATCCAGGATTTC+TGG | + | chr1.1:82061026-82061045 | MS.gene90882:intron | 35.0% |
| ! | CTTCAAACCCTTTTTAATCC+AGG | + | chr1.1:82061018-82061037 | MS.gene90882:intron | 35.0% |
| ! | TCCCATACTTTTCATATTGC+AGG | + | chr1.1:82062546-82062565 | MS.gene90882:CDS | 35.0% |
| ! | TGATGGTGAATTCGAGAATT+CGG | - | chr1.1:82060533-82060552 | None:intergenic | 35.0% |
| ! | TGTACAACTTTTCCTACAGT+GGG | + | chr1.1:82062084-82062103 | MS.gene90882:CDS | 35.0% |
| ! | TTCGAGCAGGTAATATTTTG+CGG | + | chr1.1:82063500-82063519 | MS.gene90882:CDS | 35.0% |
| ! | TTTTCAGACACTTGATTGAG+TGG | - | chr1.1:82061376-82061395 | None:intergenic | 35.0% |
| ! | TTTTCCAGTACAGATTTACC+AGG | + | chr1.1:82060807-82060826 | MS.gene90882:CDS | 35.0% |
| !! | ATTGAGCGTGATCATTTTTC+AGG | + | chr1.1:82060909-82060928 | MS.gene90882:intron | 35.0% |
| !! | CACTTCTCATTCTAAGATCT+TGG | + | chr1.1:82060761-82060780 | MS.gene90882:CDS | 35.0% |
| !! | CATTCTAAGATCTTGGGTTT+GGG | + | chr1.1:82060768-82060787 | MS.gene90882:CDS | 35.0% |
| !! | GCATCTTTTGTTGTGAGTAA+CGG | + | chr1.1:82063063-82063082 | MS.gene90882:intron | 35.0% |
| !! | GCTATTTCTTTACACTGGTT+TGG | + | chr1.1:82060939-82060958 | MS.gene90882:CDS | 35.0% |
| !! | TATATTGGTTCAGGGATTTG+AGG | + | chr1.1:82063287-82063306 | MS.gene90882:intron | 35.0% |
| !! | TCATTCTAAGATCTTGGGTT+TGG | + | chr1.1:82060767-82060786 | MS.gene90882:CDS | 35.0% |
| !! | TGTGATCCTATATTGGTTCA+GGG | + | chr1.1:82063279-82063298 | MS.gene90882:intron | 35.0% |
| !! | TTGTGATCCTATATTGGTTC+AGG | + | chr1.1:82063278-82063297 | MS.gene90882:intron | 35.0% |
| !! | TTTGGGAGTTTGATTTTGGA+GGG | + | chr1.1:82062619-82062638 | MS.gene90882:intron | 35.0% |
| !!! | ACTGTTTGTTTTTGAGGCTT+TGG | + | chr1.1:82061499-82061518 | MS.gene90882:intron | 35.0% |
| AAACAGACAAAGCAGGATGA+CGG | - | chr1.1:82062267-82062286 | None:intergenic | 40.0% | |
| AAACTTACCTAAAAGCCGTG+GGG | - | chr1.1:82060207-82060226 | None:intergenic | 40.0% | |
| AACCTGAACTTGGAAAAGCT+TGG | + | chr1.1:82063238-82063257 | MS.gene90882:intron | 40.0% | |
| AAGAGGATGGATGTTGTATG+GGG | + | chr1.1:82062484-82062503 | MS.gene90882:CDS | 40.0% | |
| ACTCCCAAACATACCATAAG+TGG | - | chr1.1:82062608-82062627 | None:intergenic | 40.0% | |
| AGAAACTTACCTAAAAGCCG+TGG | - | chr1.1:82060209-82060228 | None:intergenic | 40.0% | |
| AGTACCTGGTAAATCTGTAC+TGG | - | chr1.1:82060814-82060833 | None:intergenic | 40.0% | |
| AGTGTAAAGAAATAGCAGCC+AGG | - | chr1.1:82060935-82060954 | None:intergenic | 40.0% | |
| AGTTTGGGAAGAAGGTTTCA+AGG | - | chr1.1:82061433-82061452 | None:intergenic | 40.0% | |
| ATGGAAGTGATATTCGTCCA+TGG | + | chr1.1:82060989-82061008 | MS.gene90882:CDS | 40.0% | |
| ATGGACCACAGTTCATTAAC+GGG | + | chr1.1:82061083-82061102 | MS.gene90882:intron | 40.0% | |
| CAATCTAATATGGGATCACG+GGG | - | chr1.1:82061729-82061748 | None:intergenic | 40.0% | |
| CATCAGAGGAAGAAGAATCA+AGG | + | chr1.1:82060499-82060518 | MS.gene90882:intron | 40.0% | |
| CGTACCTTATCAGCTAAAGA+TGG | - | chr1.1:82059966-82059985 | None:intergenic | 40.0% | |
| CTAAGAGGATGGATGTTGTA+TGG | + | chr1.1:82062482-82062501 | MS.gene90882:CDS | 40.0% | |
| GAAACTTACCTAAAAGCCGT+GGG | - | chr1.1:82060208-82060227 | None:intergenic | 40.0% | |
| GAAGAAGAATCAAGGGAACT+TGG | + | chr1.1:82060507-82060526 | MS.gene90882:intron | 40.0% | |
| GATTGAGTACAAAGAATGGG+AGG | + | chr1.1:82061744-82061763 | MS.gene90882:intron | 40.0% | |
| GCTAATGAAGTTTGGGAAGA+AGG | - | chr1.1:82061441-82061460 | None:intergenic | 40.0% | |
| GCTTTATACTCGTATTGCGT+TGG | + | chr1.1:82062159-82062178 | MS.gene90882:CDS | 40.0% | |
| GTCATTCTTGTAAAGCATGC+CGG | + | chr1.1:82061800-82061819 | MS.gene90882:intron | 40.0% | |
| GTGAGCAGAATATGGTGTTT+CGG | + | chr1.1:82061524-82061543 | MS.gene90882:intron | 40.0% | |
| TAAAGTTACTGTGCGGTTAC+AGG | + | chr1.1:82061883-82061902 | MS.gene90882:intron | 40.0% | |
| TCATTCTTGTAAAGCATGCC+GGG | + | chr1.1:82061801-82061820 | MS.gene90882:intron | 40.0% | |
| TCTCAATTATGTGTGCAGAG+AGG | + | chr1.1:82062061-82062080 | MS.gene90882:intron | 40.0% | |
| TCTTTAGCTGATAAGGTACG+AGG | + | chr1.1:82059966-82059985 | MS.gene90882:intron | 40.0% | |
| TGCTCAGAACTGCATTTGTT+GGG | + | chr1.1:82063328-82063347 | MS.gene90882:CDS | 40.0% | |
| TGTACATAGCTCAAACTCGA+TGG | + | chr1.1:82062892-82062911 | MS.gene90882:intron | 40.0% | |
| TTGCTCAGAACTGCATTTGT+TGG | + | chr1.1:82063327-82063346 | MS.gene90882:CDS | 40.0% | |
| ! | AATATTTTGCGGTCTCCTGT+TGG | + | chr1.1:82063511-82063530 | MS.gene90882:CDS | 40.0% |
| ! | ATAAGGATGGAGGATTTTGG+AGG | - | chr1.1:82062783-82062802 | None:intergenic | 40.0% |
| ! | GATTCTGATTCTGGTGATGT+TGG | + | chr1.1:82063441-82063460 | MS.gene90882:intron | 40.0% |
| ! | GTGTACAACTTTTCCTACAG+TGG | + | chr1.1:82062083-82062102 | MS.gene90882:CDS | 40.0% |
| ! | GTGTTTCGGAACTGTTTTCT+TGG | + | chr1.1:82061538-82061557 | MS.gene90882:intron | 40.0% |
| ! | TAAGCTTTATGATGGAGGGA+GGG | + | chr1.1:82061284-82061303 | MS.gene90882:intron | 40.0% |
| ! | TAAGGATGGAGGATTTTGGA+GGG | - | chr1.1:82062782-82062801 | None:intergenic | 40.0% |
| ! | TTAAGCTTTATGATGGAGGG+AGG | + | chr1.1:82061283-82061302 | MS.gene90882:intron | 40.0% |
| ! | TTCATTCATTTTCGTCCCCA+CGG | + | chr1.1:82060189-82060208 | MS.gene90882:intron | 40.0% |
| ! | TTCGGAACTGTTTTCTTGGT+TGG | + | chr1.1:82061542-82061561 | MS.gene90882:intron | 40.0% |
| !! | GATGACGGAAAAATTATGCG+TGG | - | chr1.1:82062252-82062271 | None:intergenic | 40.0% |
| !! | GGCTTTTAGGTAAGTTTCTG+AGG | + | chr1.1:82060210-82060229 | MS.gene90882:intron | 40.0% |
| !! | GTTTGGGAGTTTGATTTTGG+AGG | + | chr1.1:82062618-82062637 | MS.gene90882:intron | 40.0% |
| !! | GTTTTCTTGGTTGGTGTTTG+AGG | + | chr1.1:82061551-82061570 | MS.gene90882:intron | 40.0% |
| !! | TGGCTGCTATTTCTTTACAC+TGG | + | chr1.1:82060934-82060953 | MS.gene90882:CDS | 40.0% |
| !! | TGGTGCTATTATGAGCCATT+TGG | + | chr1.1:82062945-82062964 | MS.gene90882:intron | 40.0% |
| !!! | GTTTGTTTTTGAGGCTTTGG+TGG | + | chr1.1:82061502-82061521 | MS.gene90882:intron | 40.0% |
| ACTCACAAGGGCCATTATCA+TGG | - | chr1.1:82061931-82061950 | None:intergenic | 45.0% | |
| AGGGTTTGAAGACTGTACCA+TGG | - | chr1.1:82061009-82061028 | None:intergenic | 45.0% | |
| CAATAGTTTGAGCTATGCGC+GGG | + | chr1.1:82062831-82062850 | MS.gene90882:intron | 45.0% | |
| CCAATAGTTTGAGCTATGCG+CGG | + | chr1.1:82062830-82062849 | MS.gene90882:intron | 45.0% | |
| CTAAGATCTTGGGTTTGGGA+GGG | + | chr1.1:82060772-82060791 | MS.gene90882:CDS | 45.0% | |
| GGGTGTTAAACAGACAAAGC+AGG | - | chr1.1:82062274-82062293 | None:intergenic | 45.0% | |
| TACTCGTATTGCGTTGGGAA+AGG | + | chr1.1:82062165-82062184 | MS.gene90882:CDS | 45.0% | |
| TCGAATTCACCATCAGTGAC+AGG | + | chr1.1:82060538-82060557 | MS.gene90882:intron | 45.0% | |
| TGCGCGGGACTAAAATCATT+TGG | + | chr1.1:82062846-82062865 | MS.gene90882:intron | 45.0% | |
| TGGGTGCTCAAGAGCAATTA+TGG | + | chr1.1:82061308-82061327 | MS.gene90882:intron | 45.0% | |
| TGTGAGTAACGGTAGTTGAG+AGG | + | chr1.1:82063074-82063093 | MS.gene90882:intron | 45.0% | |
| TGTTCAGCTCAAGGTCAAAG+AGG | + | chr1.1:82060274-82060293 | MS.gene90882:CDS | 45.0% | |
| TGTTGTGTGTGTGTGTGTGT+GGG | - | chr1.1:82060654-82060673 | None:intergenic | 45.0% | |
| TTCCCAAGTGAGACTCACAA+GGG | - | chr1.1:82061943-82061962 | None:intergenic | 45.0% | |
| TTCTTCTTCCTCTGATGCCT+AGG | - | chr1.1:82060496-82060515 | None:intergenic | 45.0% | |
| TTGTAAAGCATGCCGGGATA+GGG | + | chr1.1:82061807-82061826 | MS.gene90882:intron | 45.0% | |
| TTTCCCAAGTGAGACTCACA+AGG | - | chr1.1:82061944-82061963 | None:intergenic | 45.0% | |
| ! | CAGGGATTTGAGGCATATGT+CGG | + | chr1.1:82063297-82063316 | MS.gene90882:intron | 45.0% |
| ! | CGAGAGGCACGAACATTAAT+TGG | - | chr1.1:82060248-82060267 | None:intergenic | 45.0% |
| ! | GCTCAGAACTGCATTTGTTG+GGG | + | chr1.1:82063329-82063348 | MS.gene90882:CDS | 45.0% |
| ! | GTCCAAGCTTTTCCAAGTTC+AGG | - | chr1.1:82063243-82063262 | None:intergenic | 45.0% |
| ! | TCTAAGATCTTGGGTTTGGG+AGG | + | chr1.1:82060771-82060790 | MS.gene90882:CDS | 45.0% |
| ! | TGTTGGTTGTCATGGCCATT+GGG | + | chr1.1:82063528-82063547 | MS.gene90882:CDS | 45.0% |
| ! | TTTATGATGGAGGGAGGGTT+GGG | + | chr1.1:82061289-82061308 | MS.gene90882:intron | 45.0% |
| !! | AAGGATGGAGGATTTTGGAG+GGG | - | chr1.1:82062781-82062800 | None:intergenic | 45.0% |
| !! | CTTAGAATGAGAAGTGCTGC+TGG | - | chr1.1:82060757-82060776 | None:intergenic | 45.0% |
| !! | CTTTGGTGGTGAGCAGAATA+TGG | + | chr1.1:82061516-82061535 | MS.gene90882:intron | 45.0% |
| !! | GAAGTGCTGCTGGAAAAAAC+AGG | - | chr1.1:82060747-82060766 | None:intergenic | 45.0% |
| !!! | ATAATAATAACTTAAATTTT+AGG | - | chr1.1:82060411-82060430 | None:intergenic | 5.0% |
| AAGAAACCTTGAGCACGTCC+AGG | - | chr1.1:82060116-82060135 | None:intergenic | 50.0% | |
| ACCAGACTGCGCAAAAAAGC+AGG | + | chr1.1:82061974-82061993 | MS.gene90882:CDS | 50.0% | |
| ACTACATGCCTAGGCATCAG+AGG | + | chr1.1:82060485-82060504 | MS.gene90882:intron | 50.0% | |
| AGTTACTGTGCGGTTACAGG+TGG | + | chr1.1:82061886-82061905 | MS.gene90882:intron | 50.0% | |
| CAATGGCCATGACAACCAAC+AGG | - | chr1.1:82063529-82063548 | None:intergenic | 50.0% | |
| CCGCGCATAGCTCAAACTAT+TGG | - | chr1.1:82062833-82062852 | None:intergenic | 50.0% | |
| CTTGCATCATAGCCCACTGT+AGG | - | chr1.1:82062099-82062118 | None:intergenic | 50.0% | |
| CTTGTAAAGCATGCCGGGAT+AGG | + | chr1.1:82061806-82061825 | MS.gene90882:intron | 50.0% | |
| GATGCTTCTTACCTCCTTCC+TGG | + | chr1.1:82060095-82060114 | MS.gene90882:CDS | 50.0% | |
| GCCAGATGCATCATCGTTGA+TGG | + | chr1.1:82060071-82060090 | MS.gene90882:CDS | 50.0% | |
| GCCATCAACGATGATGCATC+TGG | - | chr1.1:82060075-82060094 | None:intergenic | 50.0% | |
| GTGTTGTGTGTGTGTGTGTG+TGG | - | chr1.1:82060655-82060674 | None:intergenic | 50.0% | |
| GTTGTATGGGGAGAAACAGC+TGG | + | chr1.1:82062496-82062515 | MS.gene90882:CDS | 50.0% | |
| GTTGTGTGTGTGTGTGTGTG+GGG | - | chr1.1:82060653-82060672 | None:intergenic | 50.0% | |
| TAATGTTCGTGCCTCTCGCA+AGG | + | chr1.1:82060250-82060269 | MS.gene90882:CDS | 50.0% | |
| TCGCAAGGATGTTCAGCTCA+AGG | + | chr1.1:82060265-82060284 | MS.gene90882:CDS | 50.0% | |
| TGTAAAGCATGCCGGGATAG+GGG | + | chr1.1:82061808-82061827 | MS.gene90882:intron | 50.0% | |
| TTCACCATCAGTGACAGGCA+TGG | + | chr1.1:82060543-82060562 | MS.gene90882:intron | 50.0% | |
| TTGTGTGTGTGTGTGTGTGG+GGG | - | chr1.1:82060652-82060671 | None:intergenic | 50.0% | |
| TTGTTGGGGTGGCTTCTGAA+TGG | + | chr1.1:82063343-82063362 | MS.gene90882:CDS | 50.0% | |
| ! | CAGAACTGCATTTGTTGGGG+TGG | + | chr1.1:82063332-82063351 | MS.gene90882:CDS | 50.0% |
| ! | CTGTTGGTTGTCATGGCCAT+TGG | + | chr1.1:82063527-82063546 | MS.gene90882:CDS | 50.0% |
| ! | CTTTATGATGGAGGGAGGGT+TGG | + | chr1.1:82061288-82061307 | MS.gene90882:intron | 50.0% |
| ! | TTTTCGTCCCCACGGCTTTT+AGG | + | chr1.1:82060197-82060216 | MS.gene90882:intron | 50.0% |
| !! | ATGGAGGATTTTGGAGGGGA+GGG | - | chr1.1:82062777-82062796 | None:intergenic | 50.0% |
| !! | CTACAGTGGGCTATGATGCA+AGG | + | chr1.1:82062097-82062116 | MS.gene90882:CDS | 50.0% |
| !!! | ACCTGCTTTTTTGCGCAGTC+TGG | - | chr1.1:82061978-82061997 | None:intergenic | 50.0% |
| !!! | GCGTGATCATTTTTCAGGCC+TGG | + | chr1.1:82060914-82060933 | MS.gene90882:intron | 50.0% |
| AACCTTGAGCACGTCCAGGA+AGG | - | chr1.1:82060112-82060131 | None:intergenic | 55.0% | |
| ATGGGGAGAAACAGCTGGTG+TGG | + | chr1.1:82062501-82062520 | MS.gene90882:CDS | 55.0% | |
| GAGCTGAACATCCTTGCGAG+AGG | - | chr1.1:82060264-82060283 | None:intergenic | 55.0% | |
| GGAGAAACAGCTGGTGTGGA+TGG | + | chr1.1:82062505-82062524 | MS.gene90882:CDS | 55.0% | |
| GGCCCTTGTGAGTCTCACTT+GGG | + | chr1.1:82061938-82061957 | MS.gene90882:CDS | 55.0% | |
| GTAAAGCATGCCGGGATAGG+GGG | + | chr1.1:82061809-82061828 | MS.gene90882:intron | 55.0% | |
| GTGACCATGCCTGTCACTGA+TGG | - | chr1.1:82060550-82060569 | None:intergenic | 55.0% | |
| TGGCCCTTGTGAGTCTCACT+TGG | + | chr1.1:82061937-82061956 | MS.gene90882:CDS | 55.0% | |
| TGGGACACAGCAACCACAGT+TGG | - | chr1.1:82062531-82062550 | None:intergenic | 55.0% | |
| ! | CGGTCTCCTGTTGGTTGTCA+TGG | + | chr1.1:82063520-82063539 | MS.gene90882:CDS | 55.0% |
| !! | GATGGAGGATTTTGGAGGGG+AGG | - | chr1.1:82062778-82062797 | None:intergenic | 55.0% |
| !! | GTGTGGGGGCATCAGCAATA+AGG | - | chr1.1:82060638-82060657 | None:intergenic | 55.0% |
| CTCCTTCCTGGACGTGCTCA+AGG | + | chr1.1:82060107-82060126 | MS.gene90882:CDS | 60.0% | |
| CTGGTGTGGATGGCCAACTG+TGG | + | chr1.1:82062515-82062534 | MS.gene90882:CDS | 60.0% | |
| CTTGAGCACGTCCAGGAAGG+AGG | - | chr1.1:82060109-82060128 | None:intergenic | 60.0% | |
| TGGGGTGGCTTCTGAATGGC+AGG | + | chr1.1:82063347-82063366 | MS.gene90882:CDS | 60.0% | |
| ! | ACAAGGGCACGCTGACGAAG+TGG | - | chr1.1:82059876-82059895 | None:intergenic | 60.0% |
| ATGCCGGGATAGGGGGAGAG+CGG | + | chr1.1:82061816-82061835 | MS.gene90882:intron | 65.0% | |
| TCTCCGCTCTCCCCCTATCC+CGG | - | chr1.1:82061822-82061841 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 82059865 | 82063597 | 82059865 | ID=MS.gene90882 |
| chr1.1 | mRNA | 82059865 | 82063597 | 82059865 | ID=MS.gene90882.t1;Parent=MS.gene90882 |
| chr1.1 | exon | 82059865 | 82059879 | 82059865 | ID=MS.gene90882.t1.exon1;Parent=MS.gene90882.t1 |
| chr1.1 | CDS | 82059865 | 82059879 | 82059865 | ID=cds.MS.gene90882.t1;Parent=MS.gene90882.t1 |
| chr1.1 | exon | 82060050 | 82060128 | 82060050 | ID=MS.gene90882.t1.exon2;Parent=MS.gene90882.t1 |
| chr1.1 | CDS | 82060050 | 82060128 | 82060050 | ID=cds.MS.gene90882.t1;Parent=MS.gene90882.t1 |
| chr1.1 | exon | 82060219 | 82060313 | 82060219 | ID=MS.gene90882.t1.exon3;Parent=MS.gene90882.t1 |
| chr1.1 | CDS | 82060219 | 82060313 | 82060219 | ID=cds.MS.gene90882.t1;Parent=MS.gene90882.t1 |
| chr1.1 | exon | 82060724 | 82060828 | 82060724 | ID=MS.gene90882.t1.exon4;Parent=MS.gene90882.t1 |
| chr1.1 | CDS | 82060724 | 82060828 | 82060724 | ID=cds.MS.gene90882.t1;Parent=MS.gene90882.t1 |
| chr1.1 | exon | 82060931 | 82061010 | 82060931 | ID=MS.gene90882.t1.exon5;Parent=MS.gene90882.t1 |
| chr1.1 | CDS | 82060931 | 82061010 | 82060931 | ID=cds.MS.gene90882.t1;Parent=MS.gene90882.t1 |
| chr1.1 | exon | 82061905 | 82061995 | 82061905 | ID=MS.gene90882.t1.exon6;Parent=MS.gene90882.t1 |
| chr1.1 | CDS | 82061905 | 82061995 | 82061905 | ID=cds.MS.gene90882.t1;Parent=MS.gene90882.t1 |
| chr1.1 | exon | 82062079 | 82062186 | 82062079 | ID=MS.gene90882.t1.exon7;Parent=MS.gene90882.t1 |
| chr1.1 | CDS | 82062079 | 82062186 | 82062079 | ID=cds.MS.gene90882.t1;Parent=MS.gene90882.t1 |
| chr1.1 | exon | 82062481 | 82062567 | 82062481 | ID=MS.gene90882.t1.exon8;Parent=MS.gene90882.t1 |
| chr1.1 | CDS | 82062481 | 82062567 | 82062481 | ID=cds.MS.gene90882.t1;Parent=MS.gene90882.t1 |
| chr1.1 | exon | 82063300 | 82063368 | 82063300 | ID=MS.gene90882.t1.exon9;Parent=MS.gene90882.t1 |
| chr1.1 | CDS | 82063300 | 82063368 | 82063300 | ID=cds.MS.gene90882.t1;Parent=MS.gene90882.t1 |
| chr1.1 | exon | 82063475 | 82063597 | 82063475 | ID=MS.gene90882.t1.exon10;Parent=MS.gene90882.t1 |
| chr1.1 | CDS | 82063475 | 82063597 | 82063475 | ID=cds.MS.gene90882.t1;Parent=MS.gene90882.t1 |
| Gene Sequence |
| Protein sequence |
