Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046940.t1 | XP_003610615.1 | 95.8 | 381 | 10 | 2 | 1 | 376 | 1 | 380 | 3.00E-203 | 717.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046940.t1 | A9A3L9 | 39.3 | 313 | 172 | 8 | 48 | 353 | 44 | 345 | 1.2e-54 | 215.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046940.t1 | G7K0W5 | 95.8 | 381 | 10 | 2 | 1 | 376 | 1 | 380 | 2.2e-203 | 717.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50173 | MS.gene046940 | PPI |
| MS.gene64663 | MS.gene046940 | PPI |
| MS.gene32566 | MS.gene046940 | PPI |
| MS.gene29482 | MS.gene046940 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046940.t1 | MTR_5g005050 | 95.801 | 381 | 10 | 2 | 1 | 376 | 1 | 380 | 0.0 | 748 |
| MS.gene046940.t1 | MTR_5g005050 | 86.877 | 381 | 9 | 3 | 1 | 376 | 1 | 345 | 0.0 | 662 |
| MS.gene046940.t1 | MTR_5g079860 | 40.000 | 280 | 152 | 6 | 82 | 357 | 117 | 384 | 1.78e-54 | 185 |
| MS.gene046940.t1 | MTR_8g064490 | 34.078 | 358 | 193 | 11 | 11 | 353 | 92 | 421 | 7.81e-48 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046940.t1 | AT3G19630 | 71.883 | 377 | 100 | 4 | 1 | 376 | 1 | 372 | 0.0 | 544 |
| MS.gene046940.t1 | AT2G39670 | 42.149 | 242 | 133 | 6 | 116 | 353 | 163 | 401 | 1.85e-51 | 177 |
| MS.gene046940.t1 | AT2G39670 | 42.149 | 242 | 133 | 6 | 116 | 353 | 166 | 404 | 2.31e-51 | 177 |
| MS.gene046940.t1 | AT1G60230 | 35.159 | 347 | 186 | 11 | 20 | 353 | 113 | 433 | 1.14e-49 | 173 |
Find 81 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCAGGTTGGATGCAAAA+TGG | 0.233494 | 5.4:+428220 | MS.gene046940:CDS |
| CAAAGTTCATTCCAATTATA+TGG | 0.237394 | 5.4:+427913 | MS.gene046940:CDS |
| AAGAGATGCTTCCATATAAT+TGG | 0.240823 | 5.4:-427924 | None:intergenic |
| ATTCTGTGCAACTGGAAGTA+TGG | 0.286571 | 5.4:+428250 | MS.gene046940:CDS |
| TTGATACCTTTCAACTCTAT+TGG | 0.301051 | 5.4:+429764 | MS.gene046940:CDS |
| CACGGGCAGCAGGCATTATC+TGG | 0.316832 | 5.4:-429327 | None:intergenic |
| TGCTGCCCGTGCTTTCCCTT+TGG | 0.319573 | 5.4:+429339 | MS.gene046940:CDS |
| GACTGTTGTTCGAATATTAT+AGG | 0.343108 | 5.4:-429855 | None:intergenic |
| TACTTTATGTATTTCTTCTC+AGG | 0.346947 | 5.4:+428205 | MS.gene046940:CDS |
| TTGAAGCTTGATCACAAGTT+TGG | 0.349267 | 5.4:-428093 | None:intergenic |
| CATATAATTGGAATGAACTT+TGG | 0.355589 | 5.4:-427912 | None:intergenic |
| TATCCGTAATGTTGTCTTCA+TGG | 0.357605 | 5.4:+428340 | MS.gene046940:CDS |
| GAAGAAACAATAATTCTGAT+TGG | 0.377330 | 5.4:+427949 | MS.gene046940:CDS |
| GAATCTGTGCGCATCATGAC+TGG | 0.379358 | 5.4:+428478 | MS.gene046940:CDS |
| TGTCCTCACCCATCTGCTTC+CGG | 0.386591 | 5.4:-429877 | None:intergenic |
| TATGAGATATGATACTCGTT+TGG | 0.402274 | 5.4:+428142 | MS.gene046940:CDS |
| ATTGAATACATAATGCTTGA+TGG | 0.402824 | 5.4:+429509 | MS.gene046940:CDS |
| ATGAGATATGATACTCGTTT+GGG | 0.407618 | 5.4:+428143 | MS.gene046940:CDS |
| GGTTGTAAATTCTGTGCAAC+TGG | 0.417325 | 5.4:+428242 | MS.gene046940:CDS |
| AAGATCTTCTATATCCGTTA+GGG | 0.419980 | 5.4:-429963 | None:intergenic |
| TTATCTGGCAACGGATGTCT+TGG | 0.422082 | 5.4:-429312 | None:intergenic |
| CAAGATCTTCTATATCCGTT+AGG | 0.423990 | 5.4:-429964 | None:intergenic |
| TCTCAGGTTGGATGCAAAAT+GGG | 0.425113 | 5.4:+428221 | MS.gene046940:CDS |
| CATTTCAGTTGTCATTGAAA+AGG | 0.427528 | 5.4:+428506 | MS.gene046940:CDS |
| AAGAAACAATAATTCTGATT+GGG | 0.429002 | 5.4:+427950 | MS.gene046940:CDS |
| TTATGTATTTCTTCTCAGGT+TGG | 0.448424 | 5.4:+428209 | MS.gene046940:CDS |
| AAAGGGAAAGCACGGGCAGC+AGG | 0.451798 | 5.4:-429337 | None:intergenic |
| GAGCAGCATGCCCACCTACT+AGG | 0.453566 | 5.4:+429545 | MS.gene046940:CDS |
| ACAATAATTCTGATTGGGAA+TGG | 0.456253 | 5.4:+427955 | MS.gene046940:CDS |
| TCTCCAGCAGCTTTCCTAGT+AGG | 0.463335 | 5.4:-429559 | None:intergenic |
| CAATAATTCTGATTGGGAAT+GGG | 0.463962 | 5.4:+427956 | MS.gene046940:CDS |
| TGCAAGAATATCAAAGGAAA+AGG | 0.469220 | 5.4:+429380 | MS.gene046940:CDS |
| TTCTGTGCAACTGGAAGTAT+GGG | 0.477827 | 5.4:+428251 | MS.gene046940:CDS |
| TGACCTGCCTGGTTTGAACT+TGG | 0.483687 | 5.4:+429267 | MS.gene046940:CDS |
| GATACTCGTTTGGGTAAATA+CGG | 0.499611 | 5.4:+428152 | MS.gene046940:CDS |
| CCAGCAGCTTTCCTAGTAGG+TGG | 0.502107 | 5.4:-429556 | None:intergenic |
| TATCTGGCAACGGATGTCTT+GGG | 0.508433 | 5.4:-429311 | None:intergenic |
| ATGAAGAGAAGAAGAGAGAG+GGG | 0.513472 | 5.4:-428039 | None:intergenic |
| AAGTGGTGCGTGCGGACAAT+TGG | 0.513561 | 5.4:+429901 | MS.gene046940:CDS |
| TTTAAAAGTAACTTATCCTC+TGG | 0.519468 | 5.4:+428275 | MS.gene046940:CDS |
| TTACCATGAAGACAACATTA+CGG | 0.521555 | 5.4:-428343 | None:intergenic |
| GCATTTCCGAGAGACTTGTC+AGG | 0.526946 | 5.4:-429935 | None:intergenic |
| AATGAAGAGAAGAAGAGAGA+GGG | 0.528611 | 5.4:-428040 | None:intergenic |
| AAGCTTCATAATGACCTGCC+TGG | 0.532076 | 5.4:+429256 | MS.gene046940:CDS |
| TAAGCTGAAGAAGGCAGAGA+AGG | 0.540953 | 5.4:-427990 | None:intergenic |
| TACGGTGGTCAACCTCGTCC+TGG | 0.541461 | 5.4:+428170 | MS.gene046940:CDS |
| TGGTGCGTGCGGACAATTGG+TGG | 0.546775 | 5.4:+429904 | MS.gene046940:CDS |
| TGGCAACGGATGTCTTGGGC+TGG | 0.557842 | 5.4:-429307 | None:intergenic |
| CTTGTGATCAAGCTTCAAAA+CGG | 0.559700 | 5.4:+428098 | MS.gene046940:CDS |
| CAGCAGCTTTCCTAGTAGGT+GGG | 0.560215 | 5.4:-429555 | None:intergenic |
| CTTCACTGCAAGAATATCAA+AGG | 0.561777 | 5.4:+429374 | MS.gene046940:CDS |
| AACAACAGTCCGGAAGCAGA+TGG | 0.563846 | 5.4:+429868 | MS.gene046940:CDS |
| AACTTACCTGACAAGTCTCT+CGG | 0.568451 | 5.4:+429929 | MS.gene046940:CDS |
| AGTCCGGAAGCAGATGGGTG+AGG | 0.575221 | 5.4:+429874 | MS.gene046940:CDS |
| TGGTGAAATTGTCGAGCAGT+TGG | 0.575340 | 5.4:+428295 | MS.gene046940:CDS |
| GAATGAAGAGAAGAAGAGAG+AGG | 0.577552 | 5.4:-428041 | None:intergenic |
| AATGTACCAATAGAGTTGAA+AGG | 0.587561 | 5.4:-429770 | None:intergenic |
| ATAATATTCGAACAACAGTC+CGG | 0.589378 | 5.4:+429858 | MS.gene046940:CDS |
| AGGAATGAATAAGCTGAAGA+AGG | 0.591039 | 5.4:-427999 | None:intergenic |
| CCACCTACTAGGAAAGCTGC+TGG | 0.593678 | 5.4:+429556 | MS.gene046940:CDS |
| CTGCCAAGTTCAAACCAGGC+AGG | 0.603674 | 5.4:-429270 | None:intergenic |
| CAGCAGGCATTATCTGGCAA+CGG | 0.603912 | 5.4:-429321 | None:intergenic |
| AAAGTAGCTCTCAGACCACC+AGG | 0.606040 | 5.4:-428188 | None:intergenic |
| GAGACTGCCAAGTTCAAACC+AGG | 0.607312 | 5.4:-429274 | None:intergenic |
| ACAACAGTCCGGAAGCAGAT+GGG | 0.608173 | 5.4:+429869 | MS.gene046940:CDS |
| GATCTTCTATATCCGTTAGG+GGG | 0.613539 | 5.4:-429961 | None:intergenic |
| ACAGCAGAATAGTTGTTCAA+AGG | 0.614724 | 5.4:-428451 | None:intergenic |
| AATCTGTGCGCATCATGACT+GGG | 0.616777 | 5.4:+428479 | MS.gene046940:CDS |
| AAGTGACGTTATCAGAAGAG+TGG | 0.616950 | 5.4:-428070 | None:intergenic |
| GCTCTCAGACCACCAGGACG+AGG | 0.621474 | 5.4:-428182 | None:intergenic |
| TTTGAACAACTATTCTGCTG+TGG | 0.630303 | 5.4:+428453 | MS.gene046940:CDS |
| AGATCTTCTATATCCGTTAG+GGG | 0.635379 | 5.4:-429962 | None:intergenic |
| AAAATCCGATCGGTATTCGA+CGG | 0.647476 | 5.4:+427849 | MS.gene046940:CDS |
| GCTGCTGGAGACATTTGAAG+TGG | 0.655494 | 5.4:+429571 | MS.gene046940:CDS |
| CGACGCCGTCGAATACCGAT+CGG | 0.667352 | 5.4:-427854 | None:intergenic |
| CAGATGGGTGAGGACATAAG+TGG | 0.670930 | 5.4:+429884 | MS.gene046940:CDS |
| GAGGACATAAGTGGTGCGTG+CGG | 0.673751 | 5.4:+429893 | MS.gene046940:CDS |
| GGTGGTCAACCTCGTCCTGG+TGG | 0.679750 | 5.4:+428173 | MS.gene046940:CDS |
| AGTAAGAATGAAAATCCGAT+CGG | 0.681003 | 5.4:+427839 | None:intergenic |
| CTGCTCGACAATTTCACCAG+AGG | 0.696718 | 5.4:-428291 | None:intergenic |
| ACTCGTTTGGGTAAATACGG+TGG | 0.734631 | 5.4:+428155 | MS.gene046940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTTTTTTTATTACA+GGG | + | chr5.4:428418-428437 | MS.gene046940:intron | 10.0% |
| !! | TTAATAAAGAAGATATGATT+TGG | - | chr5.4:428671-428690 | None:intergenic | 15.0% |
| !!! | ACATTTTAAAGTTTTTCAAA+TGG | + | chr5.4:428818-428837 | MS.gene046940:intron | 15.0% |
| !!! | CTGTTTTTTTTTTTTATTAC+AGG | + | chr5.4:428417-428436 | MS.gene046940:intron | 15.0% |
| !!! | TAAGTTTCAGAAAATTTTAA+GGG | + | chr5.4:429829-429848 | MS.gene046940:CDS | 15.0% |
| !! | AAGAAACAATAATTCTGATT+GGG | + | chr5.4:427950-427969 | MS.gene046940:CDS | 20.0% |
| !!! | AAGTTTCAGAAAATTTTAAG+GGG | + | chr5.4:429830-429849 | MS.gene046940:CDS | 20.0% |
| !!! | AGATAAGTTAATTTTGTGTT+TGG | - | chr5.4:428988-429007 | None:intergenic | 20.0% |
| !!! | ATAAGTTAACTTGCATTAAT+TGG | + | chr5.4:428590-428609 | MS.gene046940:intron | 20.0% |
| !!! | CTAAGTTTCAGAAAATTTTA+AGG | + | chr5.4:429828-429847 | MS.gene046940:CDS | 20.0% |
| !!! | TAAGTTAACTTGCATTAATT+GGG | + | chr5.4:428591-428610 | MS.gene046940:intron | 20.0% |
| !!! | TTTTTTTTATTACAGGGAAT+GGG | + | chr5.4:428424-428443 | MS.gene046940:intron | 20.0% |
| !!! | TTTTTTTTTATTACAGGGAA+TGG | + | chr5.4:428423-428442 | MS.gene046940:intron | 20.0% |
| ! | ATTGAATACATAATGCTTGA+TGG | + | chr5.4:429509-429528 | MS.gene046940:CDS | 25.0% |
| ! | CAAAGTTCATTCCAATTATA+TGG | + | chr5.4:427913-427932 | MS.gene046940:CDS | 25.0% |
| ! | CATATAATTGGAATGAACTT+TGG | - | chr5.4:427915-427934 | None:intergenic | 25.0% |
| ! | GAAGAAACAATAATTCTGAT+TGG | + | chr5.4:427949-427968 | MS.gene046940:CDS | 25.0% |
| ! | TACTTCAAAATTCAAACTTC+AGG | - | chr5.4:429642-429661 | None:intergenic | 25.0% |
| ! | TACTTTATGTATTTCTTCTC+AGG | + | chr5.4:428205-428224 | MS.gene046940:CDS | 25.0% |
| ! | TTTAAAAGTAACTTATCCTC+TGG | + | chr5.4:428275-428294 | MS.gene046940:CDS | 25.0% |
| !! | CATTGTTAAGTCATTTCTTT+TGG | + | chr5.4:429148-429167 | MS.gene046940:intron | 25.0% |
| !! | TTTTGGTAAAAGTTCTTGAA+CGG | + | chr5.4:429165-429184 | MS.gene046940:intron | 25.0% |
| !!! | AAAGTTTTTCAAATGGTGTT+TGG | + | chr5.4:428825-428844 | MS.gene046940:intron | 25.0% |
| !!! | AGTCAATGGTTGATATTTTA+CGG | - | chr5.4:428545-428564 | None:intergenic | 25.0% |
| !!! | TATACCGATTTTTGAGAATT+CGG | - | chr5.4:427889-427908 | None:intergenic | 25.0% |
| AAGAGATGCTTCCATATAAT+TGG | - | chr5.4:427927-427946 | None:intergenic | 30.0% | |
| AAGATCTTCTATATCCGTTA+GGG | - | chr5.4:429966-429985 | None:intergenic | 30.0% | |
| AATGTACCAATAGAGTTGAA+AGG | - | chr5.4:429773-429792 | None:intergenic | 30.0% | |
| ACAATAATTCTGATTGGGAA+TGG | + | chr5.4:427955-427974 | MS.gene046940:CDS | 30.0% | |
| ATAATATTCGAACAACAGTC+CGG | + | chr5.4:429858-429877 | MS.gene046940:CDS | 30.0% | |
| ATGAGATATGATACTCGTTT+GGG | + | chr5.4:428143-428162 | MS.gene046940:CDS | 30.0% | |
| CAATAATTCTGATTGGGAAT+GGG | + | chr5.4:427956-427975 | MS.gene046940:CDS | 30.0% | |
| CACTCAAATAGTAATTGCTA+TGG | - | chr5.4:428694-428713 | None:intergenic | 30.0% | |
| CATTTCAGTTGTCATTGAAA+AGG | + | chr5.4:428506-428525 | MS.gene046940:CDS | 30.0% | |
| CATTTGCATCTATAATAGGT+TGG | + | chr5.4:429214-429233 | MS.gene046940:intron | 30.0% | |
| GACTGTTGTTCGAATATTAT+AGG | - | chr5.4:429858-429877 | None:intergenic | 30.0% | |
| GGTACATTTGCATCTATAAT+AGG | + | chr5.4:429210-429229 | MS.gene046940:intron | 30.0% | |
| TATGAGATATGATACTCGTT+TGG | + | chr5.4:428142-428161 | MS.gene046940:CDS | 30.0% | |
| TATTGTCTGAATTGTTATGC+AGG | + | chr5.4:429733-429752 | MS.gene046940:intron | 30.0% | |
| TGCAAGAATATCAAAGGAAA+AGG | + | chr5.4:429380-429399 | MS.gene046940:CDS | 30.0% | |
| TTACCATGAAGACAACATTA+CGG | - | chr5.4:428346-428365 | None:intergenic | 30.0% | |
| TTATGTATTTCTTCTCAGGT+TGG | + | chr5.4:428209-428228 | MS.gene046940:CDS | 30.0% | |
| TTGATACCTTTCAACTCTAT+TGG | + | chr5.4:429764-429783 | MS.gene046940:CDS | 30.0% | |
| ! | CATATGAAAAATCCTTTTCC+TGG | - | chr5.4:429044-429063 | None:intergenic | 30.0% |
| ! | CTTTTCAATGACAACTGAAA+TGG | - | chr5.4:428508-428527 | None:intergenic | 30.0% |
| ! | TAAAGAAGATATGATTTGGC+TGG | - | chr5.4:428667-428686 | None:intergenic | 30.0% |
| ! | TTGATATTTTACGGTTGAGA+CGG | - | chr5.4:428536-428555 | None:intergenic | 30.0% |
| ! | TTTCCCTTTGGAAAAACTAA+TGG | + | chr5.4:429351-429370 | MS.gene046940:CDS | 30.0% |
| !! | AAGAAATTTCTGGCTTATGA+AGG | + | chr5.4:429188-429207 | MS.gene046940:intron | 30.0% |
| !! | AGAAATTTCTGGCTTATGAA+GGG | + | chr5.4:429189-429208 | MS.gene046940:intron | 30.0% |
| !!! | AAGCCATTAGTTTTTCCAAA+GGG | - | chr5.4:429357-429376 | None:intergenic | 30.0% |
| AATGAAGAGAAGAAGAGAGA+GGG | - | chr5.4:428043-428062 | None:intergenic | 35.0% | |
| ACAGCAGAATAGTTGTTCAA+AGG | - | chr5.4:428454-428473 | None:intergenic | 35.0% | |
| AGATCTTCTATATCCGTTAG+GGG | - | chr5.4:429965-429984 | None:intergenic | 35.0% | |
| AGGAATGAATAAGCTGAAGA+AGG | - | chr5.4:428002-428021 | None:intergenic | 35.0% | |
| ATGCTTGATCATAAGCTCTT+GGG | - | chr5.4:428962-428981 | None:intergenic | 35.0% | |
| CAAGAGTTTGCAACATTAAC+AGG | + | chr5.4:428757-428776 | MS.gene046940:intron | 35.0% | |
| CAAGATCTTCTATATCCGTT+AGG | - | chr5.4:429967-429986 | None:intergenic | 35.0% | |
| CGAACCGAATTCTCAAAAAT+CGG | + | chr5.4:427882-427901 | MS.gene046940:CDS | 35.0% | |
| CTGTTAATGTTGCAAACTCT+TGG | - | chr5.4:428759-428778 | None:intergenic | 35.0% | |
| CTTCACTGCAAGAATATCAA+AGG | + | chr5.4:429374-429393 | MS.gene046940:CDS | 35.0% | |
| CTTGTGATCAAGCTTCAAAA+CGG | + | chr5.4:428098-428117 | MS.gene046940:CDS | 35.0% | |
| GATACTCGTTTGGGTAAATA+CGG | + | chr5.4:428152-428171 | MS.gene046940:CDS | 35.0% | |
| TAGAAGACAATGCAAGTCAA+TGG | - | chr5.4:428559-428578 | None:intergenic | 35.0% | |
| TATCCGTAATGTTGTCTTCA+TGG | + | chr5.4:428340-428359 | MS.gene046940:CDS | 35.0% | |
| TCTTGAACGGAAGAAATTTC+TGG | + | chr5.4:429178-429197 | MS.gene046940:intron | 35.0% | |
| TGCAACATTAACAGGTCTTA+GGG | + | chr5.4:428765-428784 | MS.gene046940:intron | 35.0% | |
| TTGAAGCTTGATCACAAGTT+TGG | - | chr5.4:428096-428115 | None:intergenic | 35.0% | |
| TTGCAACATTAACAGGTCTT+AGG | + | chr5.4:428764-428783 | MS.gene046940:intron | 35.0% | |
| TTTGAACAACTATTCTGCTG+TGG | + | chr5.4:428453-428472 | MS.gene046940:CDS | 35.0% | |
| ! | GTGAACAGTTTCAGTGATTT+TGG | + | chr5.4:429452-429471 | MS.gene046940:intron | 35.0% |
| !! | TCTATTGCGAAAGCTAGTTT+TGG | - | chr5.4:429017-429036 | None:intergenic | 35.0% |
| !!! | GAAGCCATTAGTTTTTCCAA+AGG | - | chr5.4:429358-429377 | None:intergenic | 35.0% |
| AAAATCCGATCGGTATTCGA+CGG | + | chr5.4:427849-427868 | MS.gene046940:CDS | 40.0% | |
| AACTTACCTGACAAGTCTCT+CGG | + | chr5.4:429929-429948 | MS.gene046940:CDS | 40.0% | |
| AAGTGACGTTATCAGAAGAG+TGG | - | chr5.4:428073-428092 | None:intergenic | 40.0% | |
| AGAATCATGCAGAAGAGCTT+AGG | + | chr5.4:428881-428900 | MS.gene046940:intron | 40.0% | |
| ATGAAGAGAAGAAGAGAGAG+GGG | - | chr5.4:428042-428061 | None:intergenic | 40.0% | |
| ATTCTGTGCAACTGGAAGTA+TGG | + | chr5.4:428250-428269 | MS.gene046940:CDS | 40.0% | |
| GAATGAAGAGAAGAAGAGAG+AGG | - | chr5.4:428044-428063 | None:intergenic | 40.0% | |
| GATCTTCTATATCCGTTAGG+GGG | - | chr5.4:429964-429983 | None:intergenic | 40.0% | |
| GATGCTTGATCATAAGCTCT+TGG | - | chr5.4:428963-428982 | None:intergenic | 40.0% | |
| GCAATAGAACTTCCAGGAAA+AGG | + | chr5.4:429029-429048 | MS.gene046940:intron | 40.0% | |
| GCTTCTCTATTCTCAACCAA+TGG | + | chr5.4:428927-428946 | MS.gene046940:intron | 40.0% | |
| GGTTGTAAATTCTGTGCAAC+TGG | + | chr5.4:428242-428261 | MS.gene046940:CDS | 40.0% | |
| TGAAATCTGAGAATTCCCTG+AGG | + | chr5.4:428712-428731 | MS.gene046940:intron | 40.0% | |
| TGCTTGATCATAAGCTCTTG+GGG | - | chr5.4:428961-428980 | None:intergenic | 40.0% | |
| TTTAATAGCACTGCGCAACA+AGG | - | chr5.4:429705-429724 | None:intergenic | 40.0% | |
| ! | ACATAATCTGCATTAGCCTC+AGG | - | chr5.4:428731-428750 | None:intergenic | 40.0% |
| ! | CATAATCTGCATTAGCCTCA+GGG | - | chr5.4:428730-428749 | None:intergenic | 40.0% |
| ! | GTTTTTCCAAAGGGAAAGCA+CGG | - | chr5.4:429348-429367 | None:intergenic | 40.0% |
| ! | TTCTGTGCAACTGGAAGTAT+GGG | + | chr5.4:428251-428270 | MS.gene046940:CDS | 40.0% |
| !! | TCTCAGGTTGGATGCAAAAT+GGG | + | chr5.4:428221-428240 | MS.gene046940:CDS | 40.0% |
| !! | TTCTCAGGTTGGATGCAAAA+TGG | + | chr5.4:428220-428239 | MS.gene046940:CDS | 40.0% |
| !! | TTTTTCCAAAGGGAAAGCAC+GGG | - | chr5.4:429347-429366 | None:intergenic | 40.0% |
| !!! | GAGGGGTTTTGAAGTTTGAA+CGG | - | chr5.4:428025-428044 | None:intergenic | 40.0% |
| AAGCTTCATAATGACCTGCC+TGG | + | chr5.4:429256-429275 | MS.gene046940:CDS | 45.0% | |
| AATCTGTGCGCATCATGACT+GGG | + | chr5.4:428479-428498 | MS.gene046940:CDS | 45.0% | |
| ACTCGTTTGGGTAAATACGG+TGG | + | chr5.4:428155-428174 | MS.gene046940:CDS | 45.0% | |
| CATGCAGAAGAGCTTAGGTT+AGG | + | chr5.4:428886-428905 | MS.gene046940:intron | 45.0% | |
| GCTTTCGCAATAGAACTTCC+AGG | + | chr5.4:429023-429042 | MS.gene046940:intron | 45.0% | |
| TAAGCTGAAGAAGGCAGAGA+AGG | - | chr5.4:427993-428012 | None:intergenic | 45.0% | |
| TATCTGGCAACGGATGTCTT+GGG | - | chr5.4:429314-429333 | None:intergenic | 45.0% | |
| TGGTGAAATTGTCGAGCAGT+TGG | + | chr5.4:428295-428314 | MS.gene046940:CDS | 45.0% | |
| TTATCTGGCAACGGATGTCT+TGG | - | chr5.4:429315-429334 | None:intergenic | 45.0% | |
| !!! | GGGTTTTGAAGTTTGAACGG+AGG | - | chr5.4:428022-428041 | None:intergenic | 45.0% |
| AAAGTAGCTCTCAGACCACC+AGG | - | chr5.4:428191-428210 | None:intergenic | 50.0% | |
| AACAACAGTCCGGAAGCAGA+TGG | + | chr5.4:429868-429887 | MS.gene046940:CDS | 50.0% | |
| ACAACAGTCCGGAAGCAGAT+GGG | + | chr5.4:429869-429888 | MS.gene046940:CDS | 50.0% | |
| CAGATGGGTGAGGACATAAG+TGG | + | chr5.4:429884-429903 | MS.gene046940:CDS | 50.0% | |
| CAGCAGCTTTCCTAGTAGGT+GGG | - | chr5.4:429558-429577 | None:intergenic | 50.0% | |
| CAGCAGGCATTATCTGGCAA+CGG | - | chr5.4:429324-429343 | None:intergenic | 50.0% | |
| CGGAAATGCTAACCCCCTAA+CGG | + | chr5.4:429949-429968 | MS.gene046940:CDS | 50.0% | |
| CTGCTCGACAATTTCACCAG+AGG | - | chr5.4:428294-428313 | None:intergenic | 50.0% | |
| GAATCTGTGCGCATCATGAC+TGG | + | chr5.4:428478-428497 | MS.gene046940:CDS | 50.0% | |
| GAGACTGCCAAGTTCAAACC+AGG | - | chr5.4:429277-429296 | None:intergenic | 50.0% | |
| GCAGAAGAGCTTAGGTTAGG+TGG | + | chr5.4:428889-428908 | MS.gene046940:intron | 50.0% | |
| GCATTTCCGAGAGACTTGTC+AGG | - | chr5.4:429938-429957 | None:intergenic | 50.0% | |
| GCTGCTGGAGACATTTGAAG+TGG | + | chr5.4:429571-429590 | MS.gene046940:CDS | 50.0% | |
| TCTCCAGCAGCTTTCCTAGT+AGG | - | chr5.4:429562-429581 | None:intergenic | 50.0% | |
| TCTTGGGGAAGCTGTTCCAT+TGG | - | chr5.4:428946-428965 | None:intergenic | 50.0% | |
| ! | TGACCTGCCTGGTTTGAACT+TGG | + | chr5.4:429267-429286 | MS.gene046940:CDS | 50.0% |
| AAGTGGTGCGTGCGGACAAT+TGG | + | chr5.4:429901-429920 | MS.gene046940:CDS | 55.0% | |
| CCACCTACTAGGAAAGCTGC+TGG | + | chr5.4:429556-429575 | MS.gene046940:CDS | 55.0% | |
| CCAGCAGCTTTCCTAGTAGG+TGG | - | chr5.4:429559-429578 | None:intergenic | 55.0% | |
| CTGCCAAGTTCAAACCAGGC+AGG | - | chr5.4:429273-429292 | None:intergenic | 55.0% | |
| GAGGACATAAGTGGTGCGTG+CGG | + | chr5.4:429893-429912 | MS.gene046940:CDS | 55.0% | |
| TGTCCTCACCCATCTGCTTC+CGG | - | chr5.4:429880-429899 | None:intergenic | 55.0% | |
| AGTCCGGAAGCAGATGGGTG+AGG | + | chr5.4:429874-429893 | MS.gene046940:CDS | 60.0% | |
| CACGGGCAGCAGGCATTATC+TGG | - | chr5.4:429330-429349 | None:intergenic | 60.0% | |
| CGACGCCGTCGAATACCGAT+CGG | - | chr5.4:427857-427876 | None:intergenic | 60.0% | |
| GAGCAGCATGCCCACCTACT+AGG | + | chr5.4:429545-429564 | MS.gene046940:CDS | 60.0% | |
| TACGGTGGTCAACCTCGTCC+TGG | + | chr5.4:428170-428189 | MS.gene046940:CDS | 60.0% | |
| TGCTGCCCGTGCTTTCCCTT+TGG | + | chr5.4:429339-429358 | MS.gene046940:CDS | 60.0% | |
| TGGCAACGGATGTCTTGGGC+TGG | - | chr5.4:429310-429329 | None:intergenic | 60.0% | |
| TGGTGCGTGCGGACAATTGG+TGG | + | chr5.4:429904-429923 | MS.gene046940:CDS | 60.0% | |
| ! | AAAGGGAAAGCACGGGCAGC+AGG | - | chr5.4:429340-429359 | None:intergenic | 60.0% |
| GCTCTCAGACCACCAGGACG+AGG | - | chr5.4:428185-428204 | None:intergenic | 65.0% | |
| GGTGGTCAACCTCGTCCTGG+TGG | + | chr5.4:428173-428192 | MS.gene046940:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 427846 | 429994 | 427846 | ID=MS.gene046940 |
| chr5.4 | mRNA | 427846 | 429994 | 427846 | ID=MS.gene046940.t1;Parent=MS.gene046940 |
| chr5.4 | exon | 427846 | 428361 | 427846 | ID=MS.gene046940.t1.exon1;Parent=MS.gene046940.t1 |
| chr5.4 | CDS | 427846 | 428361 | 427846 | ID=cds.MS.gene046940.t1;Parent=MS.gene046940.t1 |
| chr5.4 | exon | 428439 | 428543 | 428439 | ID=MS.gene046940.t1.exon2;Parent=MS.gene046940.t1 |
| chr5.4 | CDS | 428439 | 428543 | 428439 | ID=cds.MS.gene046940.t1;Parent=MS.gene046940.t1 |
| chr5.4 | exon | 429232 | 429401 | 429232 | ID=MS.gene046940.t1.exon3;Parent=MS.gene046940.t1 |
| chr5.4 | CDS | 429232 | 429401 | 429232 | ID=cds.MS.gene046940.t1;Parent=MS.gene046940.t1 |
| chr5.4 | exon | 429493 | 429592 | 429493 | ID=MS.gene046940.t1.exon4;Parent=MS.gene046940.t1 |
| chr5.4 | CDS | 429493 | 429592 | 429493 | ID=cds.MS.gene046940.t1;Parent=MS.gene046940.t1 |
| chr5.4 | exon | 429755 | 429994 | 429755 | ID=MS.gene046940.t1.exon5;Parent=MS.gene046940.t1 |
| chr5.4 | CDS | 429755 | 429994 | 429755 | ID=cds.MS.gene046940.t1;Parent=MS.gene046940.t1 |
| Gene Sequence |
| Protein sequence |
