AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047441

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047441.t1 MTR_2g010450 95.467 353 16 0 1 353 1 353 0.0 702
MS.gene047441.t1 MTR_4g092700 55.587 349 111 10 7 353 27 333 4.66e-115 337
MS.gene047441.t1 MTR_4g097940 39.368 348 175 13 5 345 2 320 4.42e-59 194
MS.gene047441.t1 MTR_5g014600 38.192 343 166 7 20 346 18 330 1.52e-58 192
MS.gene047441.t1 MTR_4g097920 39.368 348 175 13 5 345 2 320 3.48e-58 191
MS.gene047441.t1 MTR_5g014520 52.632 190 87 2 166 353 144 332 6.90e-55 183
MS.gene047441.t1 MTR_4g097920 41.254 303 151 11 44 345 29 305 2.23e-53 178
MS.gene047441.t1 MTR_0250s0040 45.813 203 106 2 151 353 65 263 9.12e-51 170
MS.gene047441.t1 MTR_5g014640 34.393 346 199 10 5 348 2 321 1.76e-50 171
MS.gene047441.t1 MTR_0246s0020 44.643 224 107 5 138 353 163 377 3.79e-49 169
MS.gene047441.t1 MTR_4g097950 54.749 179 69 4 177 346 70 245 1.67e-48 164
MS.gene047441.t1 MTR_8g009020 42.081 221 116 4 134 346 102 318 2.00e-48 166
MS.gene047441.t1 MTR_6g047570 46.154 195 100 4 161 353 143 334 3.33e-47 163
MS.gene047441.t1 MTR_5g014560 42.793 222 117 4 131 348 86 301 1.90e-46 160
MS.gene047441.t1 MTR_2g104550 50.847 177 81 2 173 346 134 307 2.56e-46 160
MS.gene047441.t1 MTR_0011s0210 47.059 187 82 4 175 353 181 358 9.35e-46 160
MS.gene047441.t1 MTR_0011s0260 45.810 179 96 1 175 353 181 358 2.65e-45 159
MS.gene047441.t1 MTR_0246s0020 45.771 201 92 5 138 330 163 354 7.10e-44 155
MS.gene047441.t1 MTR_4g067010 43.684 190 101 2 166 353 134 319 6.21e-43 152
MS.gene047441.t1 MTR_4g098035 39.904 208 107 3 156 353 141 340 1.67e-41 148
MS.gene047441.t1 MTR_0246s0050 39.904 208 107 3 156 353 120 319 1.90e-41 147
MS.gene047441.t1 MTR_4g009540 45.161 186 93 3 168 346 143 326 1.89e-39 142
MS.gene047441.t1 MTR_4g009110 46.067 178 90 2 173 346 170 345 2.02e-39 143
MS.gene047441.t1 MTR_2g104490 46.927 179 92 2 173 351 133 308 2.11e-39 142
MS.gene047441.t1 MTR_4g066460 41.627 209 111 3 151 352 122 326 7.09e-39 141
MS.gene047441.t1 MTR_2g104560 42.697 178 89 5 174 346 51 220 8.36e-39 138
MS.gene047441.t1 MTR_4g066380 40.952 210 112 3 151 353 120 324 1.66e-37 137
MS.gene047441.t1 MTR_2g104490 46.386 166 86 2 173 338 133 295 1.80e-36 134
MS.gene047441.t1 MTR_2g104650 43.094 181 100 2 168 346 85 264 7.52e-36 132
MS.gene047441.t1 MTR_8g009010 40.230 174 66 2 174 346 131 267 2.78e-35 131
MS.gene047441.t1 MTR_4g009540 45.294 170 84 3 168 330 143 310 1.18e-34 129
MS.gene047441.t1 MTR_8g069740 43.636 165 88 4 168 329 103 265 6.26e-34 126
MS.gene047441.t1 MTR_2g104590 39.773 176 83 3 173 346 65 219 2.73e-32 121
MS.gene047441.t1 MTR_7g080780 41.860 172 90 1 175 346 150 311 4.12e-31 120
MS.gene047441.t1 MTR_7g080780 41.860 172 90 1 175 346 163 324 5.54e-31 120
MS.gene047441.t1 MTR_2g104530 38.150 173 94 3 178 346 106 269 9.21e-30 115
MS.gene047441.t1 MTR_2g104500 38.728 173 94 4 177 346 104 267 3.29e-29 114
MS.gene047441.t1 MTR_7g451650 38.816 152 82 2 200 351 57 197 1.38e-25 102
MS.gene047441.t1 MTR_4g009510 35.260 173 99 4 180 351 45 205 4.02e-24 98.6
MS.gene047441.t1 MTR_7g050350 37.671 146 80 2 206 351 1 135 7.36e-24 95.9
MS.gene047441.t1 MTR_7g451650 37.671 146 80 2 206 351 1 135 7.36e-24 95.9
MS.gene047441.t1 MTR_4g009420 37.500 152 76 2 200 351 65 197 2.06e-23 96.3
MS.gene047441.t1 MTR_5g014550 41.732 127 73 1 207 333 54 179 1.13e-22 94.4
MS.gene047441.t1 MTR_6g047550 51.685 89 42 1 161 249 157 244 9.82e-22 93.6
MS.gene047441.t1 MTR_7g451650 37.778 135 73 2 200 334 57 180 2.26e-21 90.5
MS.gene047441.t1 MTR_1g072320 34.395 157 93 3 177 324 470 625 7.63e-20 91.3
MS.gene047441.t1 MTR_4g009420 36.296 135 67 2 200 334 65 180 5.59e-19 84.3
MS.gene047441.t1 MTR_8g027495 32.353 136 83 2 177 312 458 584 3.82e-16 80.1
MS.gene047441.t1 MTR_7g117670 31.618 136 84 2 177 312 402 528 4.84e-16 79.7
MS.gene047441.t1 MTR_3g104100 29.032 155 101 2 179 324 197 351 1.55e-15 77.4
MS.gene047441.t1 MTR_8g067280 33.143 175 106 3 150 313 434 608 1.61e-15 78.2
MS.gene047441.t1 MTR_5g030430 31.333 150 87 3 177 313 493 639 5.34e-15 76.6
MS.gene047441.t1 MTR_3g030700 29.189 185 120 4 149 329 175 352 1.10e-14 74.7
MS.gene047441.t1 MTR_8g024790 32.168 143 85 3 177 313 291 427 1.16e-14 75.1
MS.gene047441.t1 MTR_3g498695 28.846 156 102 2 178 324 299 454 1.35e-14 75.1
MS.gene047441.t1 MTR_3g498695 28.846 156 102 2 178 324 299 454 1.38e-14 75.1
MS.gene047441.t1 MTR_7g096350 54.386 57 26 0 177 233 355 411 8.23e-14 72.8
MS.gene047441.t1 MTR_8g024770 27.711 166 99 3 177 330 279 435 1.85e-13 71.6
MS.gene047441.t1 MTR_7g083900 28.302 159 99 3 179 324 288 444 2.89e-13 70.9
MS.gene047441.t1 MTR_7g083900 28.302 159 99 3 179 324 288 444 3.14e-13 70.9
MS.gene047441.t1 MTR_2g081040 29.032 155 101 3 179 324 179 333 1.18e-12 68.6
MS.gene047441.t1 MTR_8g064700 25.843 178 110 5 166 327 227 398 1.30e-11 65.9
MS.gene047441.t1 MTR_8g098275 25.962 208 121 5 174 352 241 444 3.44e-11 64.7
MS.gene047441.t1 MTR_8g098275 25.962 208 121 5 174 352 305 508 5.80e-11 63.9
MS.gene047441.t1 MTR_8g098275 25.962 208 121 5 174 352 398 601 6.67e-11 63.9
MS.gene047441.t1 MTR_1g112680 38.710 93 53 2 168 257 309 400 6.70e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047441.t1 AT4G37850 56.757 185 72 4 173 353 148 328 9.69e-60 196
MS.gene047441.t1 AT4G37850 56.757 185 72 4 173 353 148 328 9.69e-60 196
MS.gene047441.t1 AT2G22760 49.153 177 87 3 175 348 117 293 9.89e-49 166
MS.gene047441.t1 AT2G22770 46.809 188 86 2 177 350 132 319 6.52e-45 157
MS.gene047441.t1 AT2G22750 50.811 185 84 3 173 352 122 304 3.35e-43 152
MS.gene047441.t1 AT2G22750 50.811 185 84 3 173 352 150 332 6.36e-43 152
MS.gene047441.t1 AT2G22750 50.811 185 84 3 173 352 146 328 6.64e-43 152
MS.gene047441.t1 AT2G22750 50.811 185 83 4 173 352 122 303 6.67e-42 148
MS.gene047441.t1 AT2G22760 47.468 158 81 2 175 330 117 274 1.18e-41 147
MS.gene047441.t1 AT2G22750 50.811 185 83 4 173 352 150 331 1.61e-41 148
MS.gene047441.t1 AT1G32640 36.025 161 87 4 165 313 432 588 1.35e-18 87.4
MS.gene047441.t1 AT5G46760 34.783 161 101 2 177 334 415 574 3.79e-17 83.2
MS.gene047441.t1 AT2G46510 59.649 57 23 0 177 233 395 451 1.16e-16 81.6
MS.gene047441.t1 AT4G16430 37.143 140 70 5 118 241 247 384 3.30e-16 80.1
MS.gene047441.t1 AT1G01260 52.174 69 32 1 168 235 423 491 8.24e-16 79.0
MS.gene047441.t1 AT1G01260 52.174 69 32 1 168 235 423 491 8.24e-16 79.0
MS.gene047441.t1 AT1G01260 52.174 69 32 1 168 235 423 491 8.24e-16 79.0
MS.gene047441.t1 AT4G17880 31.013 158 107 2 177 334 416 571 1.36e-15 78.2
MS.gene047441.t1 AT1G12860 30.921 152 100 3 178 324 268 419 1.99e-14 74.3
MS.gene047441.t1 AT1G12860 31.126 151 99 3 179 324 269 419 2.51e-14 74.3
MS.gene047441.t1 AT3G26744 30.128 156 100 3 178 324 308 463 2.67e-13 71.2
MS.gene047441.t1 AT3G26744 30.128 156 100 3 178 324 308 463 2.97e-13 71.2
MS.gene047441.t1 AT3G26744 30.128 156 100 3 178 324 308 463 2.97e-13 71.2
MS.gene047441.t1 AT3G26744 30.128 156 100 3 178 324 308 463 2.97e-13 71.2
MS.gene047441.t1 AT5G57150 30.000 170 97 5 173 327 51 213 9.96e-13 67.0
MS.gene047441.t1 AT5G57150 30.000 170 97 5 173 327 50 212 1.16e-12 67.0
MS.gene047441.t1 AT5G57150 30.000 170 97 5 173 327 51 213 1.21e-12 67.0
MS.gene047441.t1 AT4G09820 31.343 134 65 3 178 308 364 473 1.36e-12 68.9
MS.gene047441.t1 AT5G57150 30.000 170 97 5 173 327 51 213 1.58e-12 67.4
MS.gene047441.t1 AT2G16910 27.879 165 90 4 178 317 315 475 1.84e-12 68.9
MS.gene047441.t1 AT5G41315 28.824 170 99 3 160 307 429 598 1.85e-12 68.9
MS.gene047441.t1 AT5G41315 28.824 170 99 3 160 307 424 593 1.88e-12 68.9
MS.gene047441.t1 AT5G41315 28.824 170 99 3 160 307 432 601 1.96e-12 68.9
MS.gene047441.t1 AT5G57150 30.000 170 97 5 173 327 50 212 2.17e-12 66.6
MS.gene047441.t1 AT3G61950 30.496 141 87 3 177 311 128 263 4.47e-12 66.6
MS.gene047441.t1 AT4G00870 46.875 64 34 0 178 241 250 313 6.20e-12 67.0
MS.gene047441.t1 AT3G61950 30.496 141 87 3 177 311 179 314 8.64e-12 65.9
MS.gene047441.t1 AT3G61950 30.496 141 87 3 177 311 128 263 9.10e-12 65.5
MS.gene047441.t1 AT3G61950 30.496 141 87 3 177 311 179 314 1.61e-11 65.1
MS.gene047441.t1 AT1G63650 27.564 156 96 3 169 307 397 552 1.88e-11 65.9
MS.gene047441.t1 AT1G63650 27.564 156 96 3 169 307 397 552 1.88e-11 65.9
MS.gene047441.t1 AT1G63650 27.564 156 96 3 169 307 397 552 1.88e-11 65.9
MS.gene047441.t1 AT4G29930 27.778 180 107 6 178 349 55 219 1.90e-11 63.5
MS.gene047441.t1 AT4G29930 28.161 174 111 4 178 349 55 216 3.26e-11 62.8
MS.gene047441.t1 AT4G29930 25.773 194 119 3 178 349 55 245 5.37e-11 62.8

Find 53 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATCTTGCTTCAATTTC+AGG 0.082646 2.4:+72887650 None:intergenic
AATAAATATCTTACCATTTC+AGG 0.175967 2.4:+72889169 None:intergenic
AACTTAACTGCTTCTGCTTT+TGG 0.208058 2.4:-72888861 MS.gene047441:CDS
AGCAGAAGCAGTTAAGTTAT+TGG 0.221213 2.4:+72888866 None:intergenic
ATGGATAAAGCTTCTGTTCT+TGG 0.240264 2.4:-72887845 MS.gene047441:CDS
AATAGCAGTTCCTTGACTTT+TGG 0.241912 2.4:-72887530 MS.gene047441:CDS
TTTCACCGGTCTTTCGTTTC+CGG 0.252447 2.4:+72888764 None:intergenic
GTTGTTGAAGTTTGGATTAT+TGG 0.283921 2.4:+72888812 None:intergenic
ATCGCTCAAGGTAACTTGTT+TGG 0.304705 2.4:-72888549 MS.gene047441:CDS
TTCGATACCTTCTTTAGGTT+TGG 0.309737 2.4:+72888375 None:intergenic
CATTATTCGATACCTTCTTT+AGG 0.329146 2.4:+72888370 None:intergenic
ATGAACTCTGCAGGGGATAA+TGG 0.331301 2.4:-72888940 MS.gene047441:intron
TCGCTCAAGGTAACTTGTTT+GGG 0.337984 2.4:-72888548 MS.gene047441:CDS
CTGTTCTTGGAGAAGCTATA+AGG 0.338206 2.4:-72887832 MS.gene047441:CDS
TATCAGAGGGTTACCTGAAA+TGG 0.381568 2.4:-72889182 MS.gene047441:intron
TTTCAGGATGAGTTCTCATA+TGG 0.392590 2.4:-72889215 None:intergenic
TAAAATTACCTGAGCAATGA+TGG 0.451657 2.4:+72887487 None:intergenic
TTGAATTACACAAATCAGTT+GGG 0.457187 2.4:-72888642 MS.gene047441:CDS
TCAAACAATGTAGTCTTATG+AGG 0.459967 2.4:+72887615 None:intergenic
TATAAGGTACTTAAAGCAAA+TGG 0.467859 2.4:-72887816 MS.gene047441:CDS
GAGCAATGATGGTTATATCA+AGG 0.480152 2.4:+72887498 None:intergenic
TTTGAATTACACAAATCAGT+TGG 0.490344 2.4:-72888643 MS.gene047441:CDS
TATTGGTATCAATAGAGCTT+AGG 0.492237 2.4:+72888883 None:intergenic
TTATTTCTTAACTGTTTCAC+CGG 0.499185 2.4:+72888750 None:intergenic
AACAGTTAAGAAATAACAGC+TGG 0.500916 2.4:-72888743 MS.gene047441:CDS
TGATATAACCATCATTGCTC+AGG 0.502657 2.4:-72887495 MS.gene047441:intron
GGACACACCATCTCAGACTT+AGG 0.503073 2.4:+72888609 None:intergenic
AGAGAAAGTGAGTGTTCTTG+AGG 0.506732 2.4:-72887792 MS.gene047441:CDS
CTTGAACAGCTTTAAAGACA+TGG 0.514024 2.4:+72888517 None:intergenic
TCATATTGTGTATCTGATGT+TGG 0.522543 2.4:+72888702 None:intergenic
AGCTTAGGTGATTATTGAAG+TGG 0.522860 2.4:+72888898 None:intergenic
TGGCAATTTGCAGATGGATG+TGG 0.531836 2.4:-72887104 MS.gene047441:intron
TGCATGGAGACTTCGCCTAC+CGG 0.553544 2.4:-72888783 MS.gene047441:CDS
TCTTGTTCCAAACCTAAAGA+AGG 0.556354 2.4:-72888382 MS.gene047441:intron
CTACATTGTTTGAAGAGTCA+AGG 0.557167 2.4:-72887605 MS.gene047441:CDS
GCAAACATGTTGATCGCTCA+AGG 0.561776 2.4:-72888561 MS.gene047441:CDS
TGTCTTTAAAGCTGTTCAAG+AGG 0.569037 2.4:-72888514 MS.gene047441:CDS
TGTGTAATTCAAATCAGCAA+AGG 0.572771 2.4:+72888653 None:intergenic
AGCAATGATGGTTATATCAA+GGG 0.578216 2.4:+72887499 None:intergenic
CTTCAACAACAAAACATGCA+TGG 0.578541 2.4:-72888799 MS.gene047441:CDS
CAGACAGAGCGATGAATCGT+TGG 0.578725 2.4:+72888406 None:intergenic
ACCGGTCTTTCGTTTCCGGT+AGG 0.581772 2.4:+72888768 None:intergenic
TGGAGATTTCATCTATCAGA+GGG 0.587975 2.4:-72889195 MS.gene047441:CDS
GAAAGTGAGTGTTCTTGAGG+AGG 0.588414 2.4:-72887789 MS.gene047441:CDS
ATTGAAGCCTAAGTCTGAGA+TGG 0.590244 2.4:-72888616 MS.gene047441:CDS
ATGGAGATTTCATCTATCAG+AGG 0.606668 2.4:-72889196 MS.gene047441:CDS
GGTGAAATTCCCAAAAGTCA+AGG 0.621239 2.4:+72887520 None:intergenic
GCCTACCGGAAACGAAAGAC+CGG 0.631389 2.4:-72888769 MS.gene047441:CDS
TATTGTGTATCTGATGTTGG+AGG 0.636554 2.4:+72888705 None:intergenic
AACTCTGCAGGGGATAATGG+AGG 0.663168 2.4:-72888937 MS.gene047441:intron
ATGATCACATCGTAGCGGAG+AGG 0.690331 2.4:-72888449 MS.gene047441:CDS
TGACAGTGAAGGATCTTGTG+AGG 0.718300 2.4:-72887072 MS.gene047441:CDS
AGCTCATGATCACATCGTAG+CGG 0.723921 2.4:-72888454 MS.gene047441:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTAGTTAATTATCA+GGG - chr2.4:72888090-72888109 MS.gene047441:intron 10.0%
!! TCCAATATTCATATAAAATT+AGG + chr2.4:72889117-72889136 None:intergenic 15.0%
!! TTAACATTAGATATACATAT+AGG - chr2.4:72888351-72888370 MS.gene047441:intron 15.0%
!!! AAAAGTATATATTTCATCTT+AGG - chr2.4:72887929-72887948 MS.gene047441:intron 15.0%
!!! CTTTTTTAATAGTTTATCTT+AGG + chr2.4:72888217-72888236 None:intergenic 15.0%
!!! GTAATATTTCAATTTTGATT+AGG - chr2.4:72887993-72888012 MS.gene047441:intron 15.0%
!!! GTTATTTTTAGTTAATTATC+AGG - chr2.4:72888089-72888108 MS.gene047441:intron 15.0%
!!! TCCTAATTTTATATGAATAT+TGG - chr2.4:72889113-72889132 MS.gene047441:intron 15.0%
!! AATAAATATCTTACCATTTC+AGG + chr2.4:72887081-72887100 None:intergenic 20.0%
!! AATTGTGTATCAAGTATTAT+TGG - chr2.4:72888067-72888086 MS.gene047441:intron 20.0%
!! ATATGAATATTGGAATTGTT+TGG - chr2.4:72889123-72889142 MS.gene047441:intron 20.0%
!! ATTCATATAAAATTAGGACT+TGG + chr2.4:72889111-72889130 None:intergenic 20.0%
!!! TATATACTTTTGACAATATG+AGG + chr2.4:72887920-72887939 None:intergenic 20.0%
! TTAAATCTCCATGTGTTAAA+TGG + chr2.4:72887200-72887219 None:intergenic 25.0%
! TTGAAGTGGTGTAAAAAATT+AGG + chr2.4:72887338-72887357 None:intergenic 25.0%
! TTGAATTACACAAATCAGTT+GGG - chr2.4:72887605-72887624 MS.gene047441:CDS 25.0%
! TTTGAATTACACAAATCAGT+TGG - chr2.4:72887604-72887623 MS.gene047441:CDS 25.0%
!! GAGATTTAAAACATGGTATT+TGG - chr2.4:72887211-72887230 MS.gene047441:intron 25.0%
!! TATAAGGTACTTAAAGCAAA+TGG - chr2.4:72888431-72888450 MS.gene047441:CDS 25.0%
!! TTATTTCTTAACTGTTTCAC+CGG + chr2.4:72887500-72887519 None:intergenic 25.0%
!! TTTTTGAACCATTTAACACA+TGG - chr2.4:72887189-72887208 MS.gene047441:intron 25.0%
!!! CTAAAGAAATTTTAACCAAG+AGG + chr2.4:72888129-72888148 None:intergenic 25.0%
!!! GATTGATTGTTATTTGTTGA+CGG + chr2.4:72888996-72889015 None:intergenic 25.0%
AACAGTTAAGAAATAACAGC+TGG - chr2.4:72887504-72887523 MS.gene047441:CDS 30.0%
AACATCGTGATATCTTTGTT+AGG - chr2.4:72887971-72887990 MS.gene047441:intron 30.0%
ACAAAAAAGGAAGAAAACTG+TGG - chr2.4:72888482-72888501 MS.gene047441:CDS 30.0%
AGCAATGATGGTTATATCAA+GGG + chr2.4:72888751-72888770 None:intergenic 30.0%
CAAAATCTTGCTTCAATTTC+AGG + chr2.4:72888600-72888619 None:intergenic 30.0%
CATTATTCGATACCTTCTTT+AGG + chr2.4:72887880-72887899 None:intergenic 30.0%
GTTGTTGAAGTTTGGATTAT+TGG + chr2.4:72887438-72887457 None:intergenic 30.0%
TAAAATTACCTGAGCAATGA+TGG + chr2.4:72888763-72888782 None:intergenic 30.0%
TATTGGTATCAATAGAGCTT+AGG + chr2.4:72887367-72887386 None:intergenic 30.0%
TCATATTGTGTATCTGATGT+TGG + chr2.4:72887548-72887567 None:intergenic 30.0%
TCGATATACCAACTATAACT+CGG - chr2.4:72888155-72888174 MS.gene047441:intron 30.0%
TGTGTAATTCAAATCAGCAA+AGG + chr2.4:72887597-72887616 None:intergenic 30.0%
! AATGTTTTATGAACTCTGCA+GGG - chr2.4:72887299-72887318 MS.gene047441:intron 30.0%
! ACACATGGAGATTTAAAACA+TGG - chr2.4:72887204-72887223 MS.gene047441:intron 30.0%
! AGTTATAGTTGGTATATCGA+GGG + chr2.4:72888155-72888174 None:intergenic 30.0%
! ATGTTTTATAGTTCCTCGTA+AGG + chr2.4:72887956-72887975 None:intergenic 30.0%
! TAATGTTTTATGAACTCTGC+AGG - chr2.4:72887298-72887317 MS.gene047441:intron 30.0%
! TGAGCTTGAGAGATTTTATT+AGG + chr2.4:72887779-72887798 None:intergenic 30.0%
! TTTTACATACTCATGATTCC+TGG + chr2.4:72888049-72888068 None:intergenic 30.0%
!! TCAAACAATGTAGTCTTATG+AGG + chr2.4:72888635-72888654 None:intergenic 30.0%
!!! CATGTTTTGTTGTTGAAGTT+TGG + chr2.4:72887446-72887465 None:intergenic 30.0%
!!! CATGTTTTTTATGACAAACC+AGG - chr2.4:72888028-72888047 MS.gene047441:intron 30.0%
!!! GTACTAGTGTTATCGATTTT+CGG + chr2.4:72887662-72887681 None:intergenic 30.0%
AGCAGAAGCAGTTAAGTTAT+TGG + chr2.4:72887384-72887403 None:intergenic 35.0%
AGCTTAGGTGATTATTGAAG+TGG + chr2.4:72887352-72887371 None:intergenic 35.0%
ATGGAGATTTCATCTATCAG+AGG - chr2.4:72887051-72887070 MS.gene047441:CDS 35.0%
ATGGATAAAGCTTCTGTTCT+TGG - chr2.4:72888402-72888421 MS.gene047441:CDS 35.0%
ATTGTTTGGCAATTTGCAGA+TGG - chr2.4:72889137-72889156 MS.gene047441:intron 35.0%
CCACAAAAATTCAGAAGCTA+AGG + chr2.4:72887256-72887275 None:intergenic 35.0%
CTACATTGTTTGAAGAGTCA+AGG - chr2.4:72888642-72888661 MS.gene047441:CDS 35.0%
CTTCAACAACAAAACATGCA+TGG - chr2.4:72887448-72887467 MS.gene047441:intron 35.0%
GAGCAATGATGGTTATATCA+AGG + chr2.4:72888752-72888771 None:intergenic 35.0%
TATTGTGTATCTGATGTTGG+AGG + chr2.4:72887545-72887564 None:intergenic 35.0%
TCTTGTTCCAAACCTAAAGA+AGG - chr2.4:72887865-72887884 MS.gene047441:intron 35.0%
TGATATAACCATCATTGCTC+AGG - chr2.4:72888752-72888771 MS.gene047441:CDS 35.0%
TGGAGATTTCATCTATCAGA+GGG - chr2.4:72887052-72887071 MS.gene047441:CDS 35.0%
TGGTAGCTAGGACTAATTAA+GGG - chr2.4:72887273-72887292 MS.gene047441:intron 35.0%
TTCTTGAGGAGGAACAAAAA+AGG - chr2.4:72888469-72888488 MS.gene047441:CDS 35.0%
! AACTTAACTGCTTCTGCTTT+TGG - chr2.4:72887386-72887405 MS.gene047441:intron 35.0%
! AATAGCAGTTCCTTGACTTT+TGG - chr2.4:72888717-72888736 MS.gene047441:CDS 35.0%
! ATAGCAGTTCCTTGACTTTT+GGG - chr2.4:72888718-72888737 MS.gene047441:CDS 35.0%
! ATGTTTTATGAACTCTGCAG+GGG - chr2.4:72887300-72887319 MS.gene047441:intron 35.0%
! CCTTAGCTTCTGAATTTTTG+TGG - chr2.4:72887253-72887272 MS.gene047441:intron 35.0%
! GAGTTATAGTTGGTATATCG+AGG + chr2.4:72888156-72888175 None:intergenic 35.0%
! TCTGAATTTTTGTGGTAGCT+AGG - chr2.4:72887261-72887280 MS.gene047441:intron 35.0%
! TTCAGTTTTCTGCATACAGA+TGG - chr2.4:72888383-72888402 MS.gene047441:CDS 35.0%
! TTCGATACCTTCTTTAGGTT+TGG + chr2.4:72887875-72887894 None:intergenic 35.0%
!! CTTGAACAGCTTTAAAGACA+TGG + chr2.4:72887733-72887752 None:intergenic 35.0%
!! TGTCTTTAAAGCTGTTCAAG+AGG - chr2.4:72887733-72887752 MS.gene047441:CDS 35.0%
ACCAACTATAACTCGGATAG+AGG - chr2.4:72888162-72888181 MS.gene047441:intron 40.0%
AGAGAAAGTGAGTGTTCTTG+AGG - chr2.4:72888455-72888474 MS.gene047441:CDS 40.0%
ATTGAAGCCTAAGTCTGAGA+TGG - chr2.4:72887631-72887650 MS.gene047441:CDS 40.0%
CAAATGTCATCTTTCCAAGC+AGG + chr2.4:72888300-72888319 None:intergenic 40.0%
CTGTTCTTGGAGAAGCTATA+AGG - chr2.4:72888415-72888434 MS.gene047441:CDS 40.0%
GGTGAAATTCCCAAAAGTCA+AGG + chr2.4:72888730-72888749 None:intergenic 40.0%
GTGGTAGCTAGGACTAATTA+AGG - chr2.4:72887272-72887291 MS.gene047441:intron 40.0%
TATCAGAGGGTTACCTGAAA+TGG - chr2.4:72887065-72887084 MS.gene047441:CDS 40.0%
TCCTCTATCCGAGTTATAGT+TGG + chr2.4:72888166-72888185 None:intergenic 40.0%
TTTCATCTTAGGTCCTTACG+AGG - chr2.4:72887940-72887959 MS.gene047441:intron 40.0%
! GGAATTTTGCATGACAGTGA+AGG - chr2.4:72889164-72889183 MS.gene047441:intron 40.0%
!! ATCGCTCAAGGTAACTTGTT+TGG - chr2.4:72887698-72887717 MS.gene047441:CDS 40.0%
!! TCGCTCAAGGTAACTTGTTT+GGG - chr2.4:72887699-72887718 MS.gene047441:CDS 40.0%
AGCTCATGATCACATCGTAG+CGG - chr2.4:72887793-72887812 MS.gene047441:CDS 45.0%
ATGAACTCTGCAGGGGATAA+TGG - chr2.4:72887307-72887326 MS.gene047441:intron 45.0%
GAAAGTGAGTGTTCTTGAGG+AGG - chr2.4:72888458-72888477 MS.gene047441:CDS 45.0%
GCAAACATGTTGATCGCTCA+AGG - chr2.4:72887686-72887705 MS.gene047441:CDS 45.0%
GGTTTGAACTCTAGACCTCT+TGG - chr2.4:72888111-72888130 MS.gene047441:intron 45.0%
TGACAGTGAAGGATCTTGTG+AGG - chr2.4:72889175-72889194 MS.gene047441:intron 45.0%
TGGCAATTTGCAGATGGATG+TGG - chr2.4:72889143-72889162 MS.gene047441:intron 45.0%
TTTCACCGGTCTTTCGTTTC+CGG + chr2.4:72887486-72887505 None:intergenic 45.0%
!! AGGTAGCTCAGTTGGTAAGT+TGG + chr2.4:72888280-72888299 None:intergenic 45.0%
!! GGTAGCTCAGTTGGTAAGTT+GGG + chr2.4:72888279-72888298 None:intergenic 45.0%
!! GTAGCTCAGTTGGTAAGTTG+GGG + chr2.4:72888278-72888297 None:intergenic 45.0%
CAGACAGAGCGATGAATCGT+TGG + chr2.4:72887844-72887863 None:intergenic 50.0%
GGACACACCATCTCAGACTT+AGG + chr2.4:72887641-72887660 None:intergenic 50.0%
TACCAACTGAGCTACCTGCT+TGG - chr2.4:72888283-72888302 MS.gene047441:intron 50.0%
TTCCAAGCAGGTAGCTCAGT+TGG + chr2.4:72888288-72888307 None:intergenic 50.0%
! AACTCTGCAGGGGATAATGG+AGG - chr2.4:72887310-72887329 MS.gene047441:intron 50.0%
! ATGATCACATCGTAGCGGAG+AGG - chr2.4:72887798-72887817 MS.gene047441:CDS 50.0%
! GTAAGTTGGGGTCAGCTACA+TGG + chr2.4:72888266-72888285 None:intergenic 50.0%
ACCGGTCTTTCGTTTCCGGT+AGG + chr2.4:72887482-72887501 None:intergenic 55.0%
GCCTACCGGAAACGAAAGAC+CGG - chr2.4:72887478-72887497 MS.gene047441:intron 55.0%
TGCATGGAGACTTCGCCTAC+CGG - chr2.4:72887464-72887483 MS.gene047441:intron 55.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 72887039 72889230 72887039 ID=MS.gene047441
chr2.4 mRNA 72887039 72889230 72887039 ID=MS.gene047441.t1;Parent=MS.gene047441
chr2.4 exon 72889183 72889230 72889183 ID=MS.gene047441.t1.exon1;Parent=MS.gene047441.t1
chr2.4 CDS 72889183 72889230 72889183 ID=cds.MS.gene047441.t1;Parent=MS.gene047441.t1
chr2.4 exon 72888383 72888949 72888383 ID=MS.gene047441.t1.exon2;Parent=MS.gene047441.t1
chr2.4 CDS 72888383 72888949 72888383 ID=cds.MS.gene047441.t1;Parent=MS.gene047441.t1
chr2.4 exon 72887496 72887867 72887496 ID=MS.gene047441.t1.exon3;Parent=MS.gene047441.t1
chr2.4 CDS 72887496 72887867 72887496 ID=cds.MS.gene047441.t1;Parent=MS.gene047441.t1
chr2.4 exon 72887039 72887113 72887039 ID=MS.gene047441.t1.exon4;Parent=MS.gene047441.t1
chr2.4 CDS 72887039 72887113 72887039 ID=cds.MS.gene047441.t1;Parent=MS.gene047441.t1
Gene Sequence

>MS.gene047441

ATGAGTTCTCATATGGAGATTTCATCTATCAGAGGGTTACCTGAAATGGTAAGATATTTATTTTCTGTAAAAACAAAATTGAATCAATTTAGACTATTCAAGTTAAAAGTGTGAATTATTTATTATGTATGTTTACATTGACTAACTTTATTTTTGAACCATTTAACACATGGAGATTTAAAACATGGTATTTGGTTGATGAAATTTCTTTGAACCTTAGCTTCTGAATTTTTGTGGTAGCTAGGACTAATTAAGGGTATAATGTTTTATGAACTCTGCAGGGGATAATGGAGGATCCTAATTTTTTACACCACTTCAATAATCACCTAAGCTCTATTGATACCAATAACTTAACTGCTTCTGCTTTTGGAGATGCTTTACAAAAACATATTTTGTCCAATAATCCAAACTTCAACAACAAAACATGCATGGAGACTTCGCCTACCGGAAACGAAAGACCGGTGAAACAGTTAAGAAATAACAGCTGGAATTACAACAATAGTCCTCCAACATCAGATACACAATATGATAATTGTTGCTCTAATAATCTTCTTTCCTTTGCTGATTTGAATTACACAAATCAGTTGGGACTATTGAAGCCTAAGTCTGAGATGGTGTGTCCGAAAATCGATAACACTAGTACTCTTGCAAACATGTTGATCGCTCAAGGTAACTTGTTTGGGAATCAAAACCATGTCTTTAAAGCTGTTCAAGAGGCTAAAGATATTGAGAATCGTCCTAATAAAATCTCTCAAGCTCATGATCACATCGTAGCGGAGAGGAAGCGTCGCGAGAAGCTTAGCCAACGATTCATCGCTCTGTCTGCTCTTGTTCCAAACCTAAAGAAGGTATCGAATAATGTTGTTAATGTATTATTGCCTCATATTGTCAAAAGTATATATTTCATCTTAGGTCCTTACGAGGAACTATAAAACATCGTGATATCTTTGTTAGGTAATATTTCAATTTTGATTAGGATAAATATTAAACATGTTTTTTATGACAAACCAGGAATCATGAGTATGTAAAATTGTGTATCAAGTATTATTGGTTATTTTTAGTTAATTATCAGGGTTTGAACTCTAGACCTCTTGGTTAAAATTTCTTTAGTGTCCCTCGATATACCAACTATAACTCGGATAGAGGAAAGTCAGATCACTAGAGACAGATGAAGACCTAAGATAAACTATTAAAAAAGATTTAGAGATTATAGCGTAATTTGATCCATGTAGCTGACCCCAACTTACCAACTGAGCTACCTGCTTGGAAAGATGACATTTGTGTTCAAATAATGCAGTGTCAAATTTTAAACTTAACATTAGATATACATATAGGTCTCATTTTTTCAGTTTTCTGCATACAGATGGATAAAGCTTCTGTTCTTGGAGAAGCTATAAGGTACTTAAAGCAAATGGAAGAGAAAGTGAGTGTTCTTGAGGAGGAACAAAAAAGGAAGAAAACTGTGGAATCTGTTGTAATAGTGAAGAAATCTCAACTTTCTATTAATGATGCTGAAAACTCTTGTTCAGACACTGATAGTACATTTGATGAGACATTACCTGAAATTGAAGCAAGATTTTGTGAAAGAAGTGTCCTCATAAGACTACATTGTTTGAAGAGTCAAGGAGTTATTGAGAAAATTATGAGTGAAATTGAGAAACTTCATCTGAAAGTCATCAATAGCAGTTCCTTGACTTTTGGGAATTTCACCCTTGATATAACCATCATTGCTCAGGTAATTTTACGAGTAATTAATTATATTACTCTAAGCATTATGATTAATTAGTTCACACAATATAGATATTGTTTTAAGTTAGATTATTTATAAAAGTAACACAAAAATGTTGATTATACAAATTAAATTAAATACTCAGTACTCACACTCATAATATGTATTGTACATGCAACATTCTATTTTTTCAAAAAATTAATTTTAATTTTAAAAAGTTTTACACCGTCAACAAATAACAATCAATCATATATGCGAATTTAAAAGCAGTTATAATGAAAAGTAAATATTTTTAATGATCTCGCAATTATGATTGATTGATCATGTAAATAAAATCACGCCAAGTCCTAATTTTATATGAATATTGGAATTGTTTGGCAATTTGCAGATGGATGTGGAATTTTGCATGACAGTGAAGGATCTTGTGAGGAAGCTACGTTCAGCATATTCATCTTTCATGTGA
Protein sequence

>MS.gene047441.t1

MSSHMEISSIRGLPEMGIMEDPNFLHHFNNHLSSIDTNNLTASAFGDALQKHILSNNPNFNNKTCMETSPTGNERPVKQLRNNSWNYNNSPPTSDTQYDNCCSNNLLSFADLNYTNQLGLLKPKSEMVCPKIDNTSTLANMLIAQGNLFGNQNHVFKAVQEAKDIENRPNKISQAHDHIVAERKRREKLSQRFIALSALVPNLKKMDKASVLGEAIRYLKQMEEKVSVLEEEQKRKKTVESVVIVKKSQLSINDAENSCSDTDSTFDETLPEIEARFCERSVLIRLHCLKSQGVIEKIMSEIEKLHLKVINSSSLTFGNFTLDITIIAQMDVEFCMTVKDLVRKLRSAYSSFM