AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048265

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048265.t1 MTR_2g027130 96.918 584 15 1 1 581 1 584 0.0 1097
MS.gene048265.t1 MTR_4g134110 58.844 571 210 7 11 578 2 550 0.0 551
MS.gene048265.t1 MTR_3g060660 43.085 564 309 7 9 565 12 570 5.56e-106 333
MS.gene048265.t1 MTR_3g060660 42.582 519 291 4 51 565 44 559 6.76e-93 298
MS.gene048265.t1 MTR_3g007920 39.506 567 330 7 9 565 12 575 2.03e-89 290
MS.gene048265.t1 MTR_5g096080 38.624 567 335 7 9 565 12 575 4.24e-89 289
MS.gene048265.t1 MTR_4g133450 52.978 319 138 4 262 578 6 314 2.26e-78 251
MS.gene048265.t1 MTR_3g101660 29.325 607 359 18 1 562 270 851 1.60e-29 124
MS.gene048265.t1 MTR_1g019490 26.403 606 360 17 14 563 259 834 3.02e-24 108
MS.gene048265.t1 MTR_7g072550 27.018 285 205 2 282 565 150 432 9.38e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048265.t1 AT1G12150 45.357 560 275 8 11 563 8 543 7.16e-127 384
MS.gene048265.t1 AT1G12150 45.357 560 275 8 11 563 8 543 7.16e-127 384
MS.gene048265.t1 AT5G55860 41.901 568 315 6 6 565 8 568 3.85e-86 281
MS.gene048265.t1 AT4G17210 34.220 564 312 7 10 563 12 526 2.79e-68 230
MS.gene048265.t1 AT2G26570 26.557 610 379 15 9 575 154 737 2.36e-27 117
MS.gene048265.t1 AT2G26570 26.557 610 379 15 9 575 154 737 2.36e-27 117
MS.gene048265.t1 AT4G33390 28.088 591 375 16 8 561 138 715 9.18e-24 106
MS.gene048265.t1 AT1G45545 24.370 595 348 17 8 562 143 675 1.34e-13 74.3
MS.gene048265.t1 AT1G45545 24.370 595 348 17 8 562 142 674 1.60e-13 74.3
MS.gene048265.t1 AT5G42880 25.251 598 362 18 6 565 115 665 2.26e-13 73.6

Find 79 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTCTTGATGCTTTCA+TGG 0.211121 2.3:+62166604 None:intergenic
CAATTCTTGAAGTGTTATAT+TGG 0.291401 2.3:+62166958 None:intergenic
TGAAACAAGTGCTGAAATTC+AGG 0.294476 2.3:-62166411 MS.gene048265:CDS
TCGAGACCTTGTGTTTCTTC+AGG 0.296144 2.3:+62166446 None:intergenic
CAATCTGTCAAGGCTGCTAT+TGG 0.319700 2.3:-62167758 MS.gene048265:CDS
TGCCGCTTTGGAGGCGAAAT+TGG 0.336907 2.3:-62166711 MS.gene048265:CDS
TTCTGTCGAGTTAATAACTT+TGG 0.337764 2.3:-62166345 MS.gene048265:CDS
TTGGAGAACTATCTCTGTTT+CGG 0.342248 2.3:+62167834 None:intergenic
TTGGTGAAGTTCGTGTCAAC+CGG 0.365739 2.3:-62167730 MS.gene048265:CDS
AATAAAAGCAGCAACAGATT+TGG 0.368777 2.3:-62165658 MS.gene048265:CDS
AAGGCTGCTATTGGTTTGTT+TGG 0.369565 2.3:-62167749 MS.gene048265:CDS
CAAAGAAAAGGAAGATTCTA+TGG 0.384617 2.3:-62166141 MS.gene048265:CDS
ACTGGAGAATCTGTCTCCTT+TGG 0.400995 2.3:+62167815 None:intergenic
TATTTCTTCAGACAAAGCTT+TGG 0.407479 2.3:+62165977 None:intergenic
TGAGAGTCATTGTCAAGAAA+TGG 0.411564 2.3:-62166102 MS.gene048265:CDS
GAAAGAACAAGAGGAACTTA+AGG 0.412694 2.3:-62166222 MS.gene048265:CDS
TTCTAGCTCTGCAGCGAGAT+TGG 0.424207 2.3:+62165522 None:intergenic
TGGCGTCAAGAAGAACAAAA+AGG 0.451952 2.3:-62165573 MS.gene048265:CDS
AGAAATAGATAATAAATTGA+TGG 0.464169 2.3:-62166489 MS.gene048265:CDS
TGATAGAATTATTTCTATCC+CGG 0.469818 2.3:+62167711 None:intergenic
TACCTTGTAGTTCGCCGGTT+AGG 0.471965 2.3:+62166165 None:intergenic
AGAGATGAGAATGAAAGCTC+AGG 0.473161 2.3:-62166024 MS.gene048265:CDS
GTGTGATATGCAGAATGTAT+TGG 0.475004 2.3:-62167089 MS.gene048265:intron
TCAATCTCCCTCTCTCCCAC+TGG 0.484697 2.3:+62167797 None:intergenic
AAAGGAGACTCAGCTTCTCT+TGG 0.484746 2.3:-62167065 MS.gene048265:CDS
TATGCAGAATGTATTGGAAA+AGG 0.485982 2.3:-62167083 MS.gene048265:intron
GGCAGGAGAAGCTCAGCGTT+CGG 0.487792 2.3:-62166675 MS.gene048265:CDS
GCTCTTGCTGCAAACCTAAC+CGG 0.490559 2.3:-62166179 MS.gene048265:CDS
AAGCGATAGGGTATGAAGCT+TGG 0.500293 2.3:-62166832 MS.gene048265:CDS
AGAACTAGAACATGCAAGAA+AGG 0.501099 2.3:-62166804 MS.gene048265:CDS
AGCGCTTATCGAGCTTGATA+AGG 0.503328 2.3:-62166981 MS.gene048265:CDS
AGATTCTCCAGTGGGAGAGA+GGG 0.507692 2.3:-62167804 MS.gene048265:CDS
TTGGCTGCATTTCAGATGGC+AGG 0.508839 2.3:-62166692 MS.gene048265:CDS
TCAGCAAAACTAGCAGTTGA+AGG 0.511221 2.3:-62165609 MS.gene048265:CDS
ACTACAAGGTAGCAAAGAAA+AGG 0.511736 2.3:-62166153 MS.gene048265:CDS
CAGATTCTCCAGTGGGAGAG+AGG 0.514331 2.3:-62167805 MS.gene048265:CDS
AGAGTTTCGTAATTCTGAGA+TGG 0.518540 2.3:-62166369 MS.gene048265:CDS
TTTGCTACCTTGTAGTTCGC+CGG 0.522771 2.3:+62166160 None:intergenic
AGAAACAACTGCAATGGCTC+AGG 0.523434 2.3:-62165751 MS.gene048265:CDS
GATGAATTTGCTGCTCTAAG+TGG 0.529272 2.3:-62165810 MS.gene048265:CDS
AAAGATCAATGAACTTTCAA+AGG 0.534366 2.3:-62166636 MS.gene048265:CDS
GGCTCTGAGGAATGCAGAGA+TGG 0.535386 2.3:-62165637 MS.gene048265:CDS
TCAAGCCAAAGAACTCGAAA+AGG 0.537588 2.3:-62166867 MS.gene048265:CDS
GCTTTGTCTGAAGAAATAGA+AGG 0.539516 2.3:-62165972 MS.gene048265:CDS
GCAGCCTTGACAGATTGAAA+TGG 0.548681 2.3:+62167764 None:intergenic
AACAACTGCAATGGCTCAGG+TGG 0.549356 2.3:-62165748 MS.gene048265:CDS
TGCAACTGCACAAGCACAAG+AGG 0.549409 2.3:-62166573 MS.gene048265:CDS
ACAAGTGAAGAAAGAACAAG+AGG 0.551605 2.3:-62166231 MS.gene048265:CDS
GCGCTATCACAGAAAGCGAT+AGG 0.554886 2.3:-62166845 MS.gene048265:CDS
CGCTATCACAGAAAGCGATA+GGG 0.555926 2.3:-62166844 MS.gene048265:CDS
AGAGGAACAGATTAAAGCGA+TGG 0.561662 2.3:-62166555 MS.gene048265:CDS
GAAATTGGCTGCATTTCAGA+TGG 0.565691 2.3:-62166696 MS.gene048265:CDS
AGAATCAAAGCAATCTGCAA+TGG 0.566703 2.3:-62166912 MS.gene048265:CDS
AGCTTCACTGAGAAACCTTG+TGG 0.568186 2.3:-62166276 MS.gene048265:CDS
CTTACCACTGGAATCAGAAA+CGG 0.572360 2.3:+62165848 None:intergenic
AACCTAACCGGCGAACTACA+AGG 0.573065 2.3:-62166167 MS.gene048265:CDS
TGGTGAAGTTCGTGTCAACC+GGG 0.573487 2.3:-62167729 MS.gene048265:CDS
ACAAGAGGAACTTAAGGAGA+AGG 0.576875 2.3:-62166216 MS.gene048265:CDS
CTGTCTTAAGCGAATCCACA+AGG 0.577030 2.3:+62166261 None:intergenic
GAGGAACAGATTAAAGCGAT+GGG 0.592140 2.3:-62166554 MS.gene048265:CDS
TGTCAACACGATCTTACCAC+TGG 0.594761 2.3:+62165836 None:intergenic
AATGTGAAGATTTGATTGAG+AGG 0.600637 2.3:-62165776 MS.gene048265:CDS
ATCTGCAATGGAAGAAAGTG+AGG 0.605339 2.3:-62166900 MS.gene048265:CDS
CAGCAACAGATTTGGCTCTG+AGG 0.613910 2.3:-62165650 MS.gene048265:CDS
AGCACCATTTCAATCTGTCA+AGG 0.619152 2.3:-62167768 MS.gene048265:CDS
CAAGCAGTTATCATTCGAGA+CGG 0.628969 2.3:-62166069 MS.gene048265:CDS
GCGTTCGGCGAAATTGAACT+CGG 0.630622 2.3:-62166660 MS.gene048265:CDS
AAGGAGACAGATTCTCCAGT+GGG 0.630732 2.3:-62167812 MS.gene048265:CDS
TGAAGAAACACAAGGTCTCG+AGG 0.631495 2.3:-62166444 MS.gene048265:CDS
TATCAAGAGAAGATCTTCAG+AGG 0.632667 2.3:-62167693 MS.gene048265:intron
AAACAGAGATAGTTCTCCAA+AGG 0.633433 2.3:-62167831 MS.gene048265:CDS
GAGGACAGAAACAACTGCAA+TGG 0.637220 2.3:-62165757 MS.gene048265:CDS
GTCTCCGTTTCTGATTCCAG+TGG 0.639257 2.3:-62165852 MS.gene048265:CDS
TTGAAGGTGAATTAAAGAAG+TGG 0.644395 2.3:-62165593 MS.gene048265:CDS
TAAGGAGAAGGAACAAGCAG+CGG 0.645739 2.3:-62166204 MS.gene048265:CDS
AGCCAATTTCGCCTCCAAAG+CGG 0.663081 2.3:+62166709 None:intergenic
AAAGGAGACAGATTCTCCAG+TGG 0.701967 2.3:-62167813 MS.gene048265:CDS
AAGTTGTTGTCTGACGCACA+AGG 0.705883 2.3:-62165879 MS.gene048265:CDS
TATGATCCTGAAGAAACACA+AGG 0.738699 2.3:-62166452 MS.gene048265:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTACAAAAAAAAAAAAAAAA+AGG + chr2.3:62165748-62165767 None:intergenic 10.0%
!! GTTATTTATTTGTAATATTA+AGG + chr2.3:62165795-62165814 None:intergenic 10.0%
!! AGAAATAGATAATAAATTGA+TGG - chr2.3:62166877-62166896 MS.gene048265:CDS 15.0%
!! ATATTACAAATAAATAACCA+TGG - chr2.3:62165797-62165816 MS.gene048265:CDS 15.0%
!!! TTTTTTTTTTTTTTTGTACC+AGG - chr2.3:62165749-62165768 MS.gene048265:CDS 15.0%
!! AACGATTATTTGCAATATTA+AGG + chr2.3:62165718-62165737 None:intergenic 20.0%
!! ATTTGTAATATTAAGGATTG+CGG + chr2.3:62165788-62165807 None:intergenic 20.0%
!! TTAATATTGCAAATAATCGT+TGG - chr2.3:62165717-62165736 MS.gene048265:CDS 20.0%
!!! AAACTTTTACAAAACTTCAA+AGG - chr2.3:62166853-62166872 MS.gene048265:CDS 20.0%
!!! AATGCTAATTTTAATACAAG+AGG - chr2.3:62166138-62166157 MS.gene048265:CDS 20.0%
! AAAGATCAATGAACTTTCAA+AGG - chr2.3:62166730-62166749 MS.gene048265:CDS 25.0%
! ATTTGCAATATTAAGGATAG+CGG + chr2.3:62165711-62165730 None:intergenic 25.0%
! TTATTCGCAAAATTTAACCA+TGG + chr2.3:62165817-62165836 None:intergenic 25.0%
!! AATAGCAGTTTGTTCAAATT+CGG - chr2.3:62166037-62166056 MS.gene048265:CDS 25.0%
!! CAATTCTTGAAGTGTTATAT+TGG + chr2.3:62166411-62166430 None:intergenic 25.0%
!! TATTTTGTTAAGTTCTTGCT+TGG + chr2.3:62166621-62166640 None:intergenic 25.0%
!!! TGATAGAATTATTTCTATCC+CGG + chr2.3:62165658-62165677 None:intergenic 25.0%
AATAAAAGCAGCAACAGATT+TGG - chr2.3:62167708-62167727 MS.gene048265:CDS 30.0%
AATGTGAAGATTTGATTGAG+AGG - chr2.3:62167590-62167609 MS.gene048265:intron 30.0%
ACAAAAAGGTTTGGATTTGT+CGG - chr2.3:62167807-62167826 MS.gene048265:CDS 30.0%
CAAAGAAAAGGAAGATTCTA+TGG - chr2.3:62167225-62167244 MS.gene048265:intron 30.0%
TACAATATAGCACTATAGCA+TGG + chr2.3:62166063-62166082 None:intergenic 30.0%
TATGCAGAATGTATTGGAAA+AGG - chr2.3:62166283-62166302 MS.gene048265:CDS 30.0%
TATTTATGAGTTATGCGTCA+AGG - chr2.3:62166243-62166262 MS.gene048265:CDS 30.0%
TATTTCTTCAGACAAAGCTT+TGG + chr2.3:62167392-62167411 None:intergenic 30.0%
TCAAGAAGAACAAAAAGGTT+TGG - chr2.3:62167798-62167817 MS.gene048265:CDS 30.0%
TTCTGTCGAGTTAATAACTT+TGG - chr2.3:62167021-62167040 MS.gene048265:CDS 30.0%
TTGAAGGTGAATTAAAGAAG+TGG - chr2.3:62167773-62167792 MS.gene048265:CDS 30.0%
!!! ATCTAGTTCTTTTACAGTTG+TGG + chr2.3:62166594-62166613 None:intergenic 30.0%
!!! TTTTCAAGTTTGCGTGATTT+TGG - chr2.3:62166180-62166199 MS.gene048265:CDS 30.0%
AAACAGAGATAGTTCTCCAA+AGG - chr2.3:62165535-62165554 MS.gene048265:CDS 35.0%
ACAAGTGAAGAAAGAACAAG+AGG - chr2.3:62167135-62167154 MS.gene048265:intron 35.0%
ACTACAAGGTAGCAAAGAAA+AGG - chr2.3:62167213-62167232 MS.gene048265:intron 35.0%
AGAACTAGAACATGCAAGAA+AGG - chr2.3:62166562-62166581 MS.gene048265:CDS 35.0%
AGAATCAAAGCAATCTGCAA+TGG - chr2.3:62166454-62166473 MS.gene048265:CDS 35.0%
AGATGAAAAAAGAGCTGTTG+AGG - chr2.3:62167459-62167478 MS.gene048265:intron 35.0%
ATCTTCAGAGGTAAACATCA+CGG - chr2.3:62165685-62165704 MS.gene048265:CDS 35.0%
GAAAGAACAAGAGGAACTTA+AGG - chr2.3:62167144-62167163 MS.gene048265:intron 35.0%
GCTTTGTCTGAAGAAATAGA+AGG - chr2.3:62167394-62167413 MS.gene048265:intron 35.0%
GTGTGATATGCAGAATGTAT+TGG - chr2.3:62166277-62166296 MS.gene048265:CDS 35.0%
TATCAAGAGAAGATCTTCAG+AGG - chr2.3:62165673-62165692 MS.gene048265:CDS 35.0%
TATGATCCTGAAGAAACACA+AGG - chr2.3:62166914-62166933 MS.gene048265:CDS 35.0%
TATTGCACAACAATAGCGAT+TGG - chr2.3:62166081-62166100 MS.gene048265:CDS 35.0%
TGAGAGTCATTGTCAAGAAA+TGG - chr2.3:62167264-62167283 MS.gene048265:intron 35.0%
TTCTTCTCTTGATGCTTTCA+TGG + chr2.3:62166765-62166784 None:intergenic 35.0%
TTGGAGAACTATCTCTGTTT+CGG + chr2.3:62165535-62165554 None:intergenic 35.0%
! AGAGTTTCGTAATTCTGAGA+TGG - chr2.3:62166997-62167016 MS.gene048265:CDS 35.0%
! TTTTGACGTCTATGCGATTA+AGG + chr2.3:62165856-62165875 None:intergenic 35.0%
!! TGAAACAAGTGCTGAAATTC+AGG - chr2.3:62166955-62166974 MS.gene048265:CDS 35.0%
AAGCATTCAATCTTCGAAGC+AGG + chr2.3:62165935-62165954 None:intergenic 40.0%
ACAAGAGGAACTTAAGGAGA+AGG - chr2.3:62167150-62167169 MS.gene048265:intron 40.0%
AGAGATGAGAATGAAAGCTC+AGG - chr2.3:62167342-62167361 MS.gene048265:intron 40.0%
AGAGGAACAGATTAAAGCGA+TGG - chr2.3:62166811-62166830 MS.gene048265:CDS 40.0%
AGCACCATTTCAATCTGTCA+AGG - chr2.3:62165598-62165617 MS.gene048265:CDS 40.0%
AGCATTCAATCTTCGAAGCA+GGG + chr2.3:62165934-62165953 None:intergenic 40.0%
ATCTGCAATGGAAGAAAGTG+AGG - chr2.3:62166466-62166485 MS.gene048265:CDS 40.0%
CAAGCAGTTATCATTCGAGA+CGG - chr2.3:62167297-62167316 MS.gene048265:intron 40.0%
CTTACCACTGGAATCAGAAA+CGG + chr2.3:62167521-62167540 None:intergenic 40.0%
GAAATTGGCTGCATTTCAGA+TGG - chr2.3:62166670-62166689 MS.gene048265:CDS 40.0%
GAAGCAGGGTTATGACAAAA+TGG + chr2.3:62165920-62165939 None:intergenic 40.0%
GAGGAACAGATTAAAGCGAT+GGG - chr2.3:62166812-62166831 MS.gene048265:CDS 40.0%
TCAAGCCAAAGAACTCGAAA+AGG - chr2.3:62166499-62166518 MS.gene048265:CDS 40.0%
TCAGCAAAACTAGCAGTTGA+AGG - chr2.3:62167757-62167776 MS.gene048265:CDS 40.0%
TGCTTCGAAGATTGAATGCT+TGG - chr2.3:62165934-62165953 MS.gene048265:CDS 40.0%
TGGCGTCAAGAAGAACAAAA+AGG - chr2.3:62167793-62167812 MS.gene048265:CDS 40.0%
!! AAGGCTGCTATTGGTTTGTT+TGG - chr2.3:62165617-62165636 MS.gene048265:CDS 40.0%
!! ACAAGATTTTGATGCCGCTT+TGG - chr2.3:62166643-62166662 MS.gene048265:CDS 40.0%
!! GATGAATTTGCTGCTCTAAG+TGG - chr2.3:62167556-62167575 MS.gene048265:intron 40.0%
AAAGGAGACAGATTCTCCAG+TGG - chr2.3:62165553-62165572 MS.gene048265:CDS 45.0%
AAAGGAGACTCAGCTTCTCT+TGG - chr2.3:62166301-62166320 MS.gene048265:CDS 45.0%
AAGCGATAGGGTATGAAGCT+TGG - chr2.3:62166534-62166553 MS.gene048265:CDS 45.0%
AAGGAGACAGATTCTCCAGT+GGG - chr2.3:62165554-62165573 MS.gene048265:CDS 45.0%
AAGTTGTTGTCTGACGCACA+AGG - chr2.3:62167487-62167506 MS.gene048265:intron 45.0%
ACTGGAGAATCTGTCTCCTT+TGG + chr2.3:62165554-62165573 None:intergenic 45.0%
AGAAACAACTGCAATGGCTC+AGG - chr2.3:62167615-62167634 MS.gene048265:intron 45.0%
AGCGCTTATCGAGCTTGATA+AGG - chr2.3:62166385-62166404 MS.gene048265:CDS 45.0%
AGCTTCACTGAGAAACCTTG+TGG - chr2.3:62167090-62167109 MS.gene048265:intron 45.0%
CAATCTGTCAAGGCTGCTAT+TGG - chr2.3:62165608-62165627 MS.gene048265:CDS 45.0%
CGACTAACTAGCTACCATCT+GGG + chr2.3:62165974-62165993 None:intergenic 45.0%
CGCTATCACAGAAAGCGATA+GGG - chr2.3:62166522-62166541 MS.gene048265:CDS 45.0%
CGTCAAAAACCTTGATGTCG+CGG - chr2.3:62165868-62165887 MS.gene048265:CDS 45.0%
CTGTCTTAAGCGAATCCACA+AGG + chr2.3:62167108-62167127 None:intergenic 45.0%
GAGGACAGAAACAACTGCAA+TGG - chr2.3:62167609-62167628 MS.gene048265:intron 45.0%
GATTGAATGCTTGGTCCCAA+AGG - chr2.3:62165943-62165962 MS.gene048265:CDS 45.0%
GCAGCCTTGACAGATTGAAA+TGG + chr2.3:62165605-62165624 None:intergenic 45.0%
TAAGGAGAAGGAACAAGCAG+CGG - chr2.3:62167162-62167181 MS.gene048265:intron 45.0%
TCGAGACCTTGTGTTTCTTC+AGG + chr2.3:62166923-62166942 None:intergenic 45.0%
TGAAGAAACACAAGGTCTCG+AGG - chr2.3:62166922-62166941 MS.gene048265:CDS 45.0%
TGTCAACACGATCTTACCAC+TGG + chr2.3:62167533-62167552 None:intergenic 45.0%
TTGGTGAAGTTCGTGTCAAC+CGG - chr2.3:62165636-62165655 MS.gene048265:CDS 45.0%
TTGTACCAGGAAGCAGATCA+TGG - chr2.3:62165762-62165781 MS.gene048265:CDS 45.0%
TTTGCTACCTTGTAGTTCGC+CGG + chr2.3:62167209-62167228 None:intergenic 45.0%
!! CAGTTTTAACCGCGACATCA+AGG + chr2.3:62165880-62165899 None:intergenic 45.0%
!!! AGATTTTGATGCCGCTTTGG+AGG - chr2.3:62166646-62166665 MS.gene048265:CDS 45.0%
!!! TAGCGCCTTTTCGAGTTCTT+TGG + chr2.3:62166507-62166526 None:intergenic 45.0%
AACAACTGCAATGGCTCAGG+TGG - chr2.3:62167618-62167637 MS.gene048265:intron 50.0%
AACCTAACCGGCGAACTACA+AGG - chr2.3:62167199-62167218 MS.gene048265:intron 50.0%
ACCATCTGGGTCATGCCTTT+GGG + chr2.3:62165961-62165980 None:intergenic 50.0%
AGATTCTCCAGTGGGAGAGA+GGG - chr2.3:62165562-62165581 MS.gene048265:CDS 50.0%
AGCCAATTTCGCCTCCAAAG+CGG + chr2.3:62166660-62166679 None:intergenic 50.0%
GCGACTAACTAGCTACCATC+TGG + chr2.3:62165975-62165994 None:intergenic 50.0%
GCGCTATCACAGAAAGCGAT+AGG - chr2.3:62166521-62166540 MS.gene048265:CDS 50.0%
GCGTTCGGCGAAATTGAACT+CGG - chr2.3:62166706-62166725 MS.gene048265:CDS 50.0%
GCTCTTGCTGCAAACCTAAC+CGG - chr2.3:62167187-62167206 MS.gene048265:intron 50.0%
GTCTCCGTTTCTGATTCCAG+TGG - chr2.3:62167514-62167533 MS.gene048265:intron 50.0%
TACCATCTGGGTCATGCCTT+TGG + chr2.3:62165962-62165981 None:intergenic 50.0%
TGCAACTGCACAAGCACAAG+AGG - chr2.3:62166793-62166812 MS.gene048265:CDS 50.0%
TGGTGAAGTTCGTGTCAACC+GGG - chr2.3:62165637-62165656 MS.gene048265:CDS 50.0%
TTGGCTGCATTTCAGATGGC+AGG - chr2.3:62166674-62166693 MS.gene048265:CDS 50.0%
! TACCTTGTAGTTCGCCGGTT+AGG + chr2.3:62167204-62167223 None:intergenic 50.0%
!! CAGCAACAGATTTGGCTCTG+AGG - chr2.3:62167716-62167735 MS.gene048265:CDS 50.0%
CAGATTCTCCAGTGGGAGAG+AGG - chr2.3:62165561-62165580 MS.gene048265:CDS 55.0%
TCAATCTCCCTCTCTCCCAC+TGG + chr2.3:62165572-62165591 None:intergenic 55.0%
! TCCCAAAGGCATGACCCAGA+TGG - chr2.3:62165957-62165976 MS.gene048265:CDS 55.0%
!! GGCTCTGAGGAATGCAGAGA+TGG - chr2.3:62167729-62167748 MS.gene048265:CDS 55.0%
!! TGCCGCTTTGGAGGCGAAAT+TGG - chr2.3:62166655-62166674 MS.gene048265:CDS 55.0%
GGCAGGAGAAGCTCAGCGTT+CGG - chr2.3:62166691-62166710 MS.gene048265:CDS 60.0%
TGCGGCCATGATCTGCTTCC+TGG + chr2.3:62165770-62165789 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 62165524 62167864 62165524 ID=MS.gene048265
chr2.3 mRNA 62165524 62167864 62165524 ID=MS.gene048265.t1;Parent=MS.gene048265
chr2.3 exon 62167694 62167864 62167694 ID=MS.gene048265.t1.exon1;Parent=MS.gene048265.t1
chr2.3 CDS 62167694 62167864 62167694 ID=cds.MS.gene048265.t1;Parent=MS.gene048265.t1
chr2.3 exon 62165524 62167098 62165524 ID=MS.gene048265.t1.exon2;Parent=MS.gene048265.t1
chr2.3 CDS 62165524 62167098 62165524 ID=cds.MS.gene048265.t1;Parent=MS.gene048265.t1
Gene Sequence

>MS.gene048265

ATGAGTTTCCGAAACAGAGATAGTTCTCCAAAGGAGACAGATTCTCCAGTGGGAGAGAGGGAGATTGACACAAGAGCACCATTTCAATCTGTCAAGGCTGCTATTGGTTTGTTTGGTGAAGTTCGTGTCAACCGGGATAGAAATAATTCTATCAAGAGAAGATCTTCAGAGGTAAACATCACGGCCGCTATCCTTAATATTGCAAATAATCGTTGGAAACTCCTTTTTTTTTTTTTTTTTGTACCAGGAAGCAGATCATGGCCGCAATCCTTAATATTACAAATAAATAACCATGGTTAAATTTTGCGAATAATTGCAGTCAAATGCAGCCTTAATCGCATAGACGTCAAAAACCTTGATGTCGCGGTTAAAACTGCAGTTGCTAGTTGCAGACCATTTTGTCATAACCCTGCTTCGAAGATTGAATGCTTGGTCCCAAAGGCATGACCCAGATGGTAGCTAGTTAGTCGCTTACATAGTTTTAATCAGTGTTGTCAACTGAGAATCGCAGAAAATAGCAGTTTGTTCAAATTCGGCCATGCTATAGTGCTATATTGTATTGCACAACAATAGCGATTGGTTCGAATTCTGTTATGCAATAGCTGTTATTTGACAATGCTAATTTTAATACAAGAGGCACACACAACATGAGAAGATTTTCAAGTTTGCGTGATTTTGGAATTCAGAAATTTTATCATTTTTCATTGTGTTAGTGTCATTATTTATGAGTTATGCGTCAAGGTCATTAACTTTGTGTGATATGCAGAATGTATTGGAAAAGGAGACTCAGCTTCTCTTGGCTCAAAGAGAACTGAACAAGATAAAGAAAAAGCTTGAAAGTGCTGAGAGTACAAAAGCTAAAGCGCTTATCGAGCTTGATAAGGCCAATATAACACTTCAAGAATTGACAAAGAAACTCAACACTGTGAGAGAATCAAAGCAATCTGCAATGGAAGAAAGTGAGGTTGTGAAGAATCAAGCCAAAGAACTCGAAAAGGCGCTATCACAGAAAGCGATAGGGTATGAAGCTTGGAAACAAGAACTAGAACATGCAAGAAAGGAGTACACCACAACTGTAAAAGAACTAGATGCTTCCAAGCAAGAACTTAACAAAATAAGACAAGATTTTGATGCCGCTTTGGAGGCGAAATTGGCTGCATTTCAGATGGCAGGAGAAGCTCAGCGTTCGGCGAAATTGAACTCGGAAAAGATCAATGAACTTTCAAAGGAAATTGCAACCATGAAAGCATCAAGAGAAGAACTCAAGCTTGCAACTGCACAAGCACAAGAGGAACAGATTAAAGCGATGGGAGAAAGAGAAGAAAAGTTAAACTTTTACAAAACTTCAAAGGAAGAAATAGATAATAAATTGATGGAAGTGAAGAATGAGTATGATCCTGAAGAAACACAAGGTCTCGAGGCAAAACTTGCTGAAACAAGTGCTGAAATTCAGGTTCTTCAAGAGAAGATAAAAGAGTTTCGTAATTCTGAGATGGATTCTGTCGAGTTAATAACTTTGGAAATCAAAGAAGCAACAAAGACACTGCAAGAAATTTCTGAAGAAGAAGCTTCACTGAGAAACCTTGTGGATTCGCTTAAGACAGAATTAGAACAAGTGAAGAAAGAACAAGAGGAACTTAAGGAGAAGGAACAAGCAGCGGAAGCTCTTGCTGCAAACCTAACCGGCGAACTACAAGGTAGCAAAGAAAAGGAAGATTCTATGGAAAACAAAGAATCTAATGAGAGTCATTGTCAAGAAATGGAGTTGAAAATCAAGCAGTTATCATTCGAGACGGAAAATGCAAGAAAAGAAGAAGAAGAGATGAGAATGAAAGCTCAGGAACTGAAACAAGAAGCTGAGAATTCCAAAGCTTTGTCTGAAGAAATAGAAGGTAAACTAGAGATTTTATTTAAACAAGCTGAAGAAGCAAAAGCAGATGAAAAAAGAGCTGTTGAGGAGATGAAGTTGTTGTCTGACGCACAAGGTAGTGTCTCCGTTTCTGATTCCAGTGGTAAGATCGTGTTGACAGTTGATGAATTTGCTGCTCTAAGTGGAAAAATCAATGAATGTGAAGATTTGATTGAGAGGACAGAAACAACTGCAATGGCTCAGGTGGAAGCAATCAACACAAGAAGAAATGAAGTGAACAAAAAAGTCGAAGCTAATCTTCAAGCAATCGAAGAAATAAAAGCAGCAACAGATTTGGCTCTGAGGAATGCAGAGATGGCAGACTCAGCAAAACTAGCAGTTGAAGGTGAATTAAAGAAGTGGCGTCAAGAAGAACAAAAAGGTTTGGATTTGTCGGATAACTCTTCAACACCAATCTCGCTGCAGAGCTAG
Protein sequence

>MS.gene048265.t1

MSFRNRDSSPKETDSPVGEREIDTRAPFQSVKAAIGLFGEVRVNRDRNNSIKRRSSENVLEKETQLLLAQRELNKIKKKLESAESTKAKALIELDKANITLQELTKKLNTVRESKQSAMEESEVVKNQAKELEKALSQKAIGYEAWKQELEHARKEYTTTVKELDASKQELNKIRQDFDAALEAKLAAFQMAGEAQRSAKLNSEKINELSKEIATMKASREELKLATAQAQEEQIKAMGEREEKLNFYKTSKEEIDNKLMEVKNEYDPEETQGLEAKLAETSAEIQVLQEKIKEFRNSEMDSVELITLEIKEATKTLQEISEEEASLRNLVDSLKTELEQVKKEQEELKEKEQAAEALAANLTGELQGSKEKEDSMENKESNESHCQEMELKIKQLSFETENARKEEEEMRMKAQELKQEAENSKALSEEIEGKLEILFKQAEEAKADEKRAVEEMKLLSDAQGSVSVSDSSGKIVLTVDEFAALSGKINECEDLIERTETTAMAQVEAINTRRNEVNKKVEANLQAIEEIKAATDLALRNAEMADSAKLAVEGELKKWRQEEQKGLDLSDNSSTPISLQS