Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048909.t1 | KEH21195.1 | 72.7 | 689 | 45 | 4 | 1 | 689 | 1 | 546 | 4.20E-187 | 664.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048909.t1 | A0A072U5S1 | 72.7 | 689 | 45 | 4 | 1 | 689 | 1 | 546 | 3.0e-187 | 664.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056066 | MS.gene048909 | PPI |
| MS.gene01425 | MS.gene048909 | PPI |
| MS.gene50540 | MS.gene048909 | PPI |
| MS.gene43392 | MS.gene048909 | PPI |
| MS.gene91529 | MS.gene048909 | PPI |
| MS.gene44133 | MS.gene048909 | PPI |
| MS.gene048909 | MS.gene056067 | PPI |
| MS.gene048909 | MS.gene97766 | PPI |
| MS.gene90400 | MS.gene048909 | PPI |
| MS.gene048909 | MS.gene60920 | PPI |
| MS.gene048909 | MS.gene92243 | PPI |
| MS.gene005262 | MS.gene048909 | PPI |
| MS.gene048909 | MS.gene49380 | PPI |
| MS.gene018136 | MS.gene048909 | PPI |
| MS.gene065848 | MS.gene048909 | PPI |
| MS.gene048909 | MS.gene44072 | PPI |
| MS.gene036192 | MS.gene048909 | PPI |
| MS.gene047578 | MS.gene048909 | PPI |
| MS.gene048909 | MS.gene054884 | PPI |
| MS.gene96757 | MS.gene048909 | PPI |
| MS.gene048909 | MS.gene91179 | PPI |
| MS.gene048909 | MS.gene071322 | PPI |
| MS.gene048909 | MS.gene40883 | PPI |
| MS.gene002442 | MS.gene048909 | PPI |
| MS.gene005205 | MS.gene048909 | PPI |
| MS.gene048909 | MS.gene01091 | PPI |
| MS.gene020278 | MS.gene048909 | PPI |
| MS.gene54368 | MS.gene048909 | PPI |
| MS.gene39948 | MS.gene048909 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048909.t1 | MTR_8g099280 | 63.280 | 689 | 110 | 9 | 1 | 689 | 1 | 546 | 0.0 | 717 |
| MS.gene048909.t1 | MTR_8g099275 | 64.908 | 436 | 121 | 1 | 286 | 689 | 788 | 1223 | 2.55e-162 | 499 |
| MS.gene048909.t1 | MTR_8g099275 | 71.429 | 63 | 18 | 0 | 159 | 221 | 21 | 83 | 1.11e-20 | 97.8 |
| MS.gene048909.t1 | MTR_8g099275 | 62.500 | 64 | 22 | 1 | 58 | 119 | 24 | 87 | 1.71e-14 | 78.2 |
| MS.gene048909.t1 | MTR_8g099290 | 47.969 | 640 | 207 | 12 | 132 | 687 | 60 | 657 | 8.85e-144 | 434 |
| MS.gene048909.t1 | MTR_8g099265 | 29.444 | 360 | 204 | 5 | 336 | 683 | 476 | 797 | 1.69e-29 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048909.t1 | AT5G41790 | 30.867 | 392 | 206 | 8 | 310 | 689 | 1244 | 1582 | 1.78e-32 | 135 |
| MS.gene048909.t1 | AT5G41790 | 30.867 | 392 | 206 | 8 | 310 | 689 | 1244 | 1582 | 1.78e-32 | 135 |
| MS.gene048909.t1 | AT5G41780 | 26.170 | 470 | 272 | 17 | 230 | 680 | 118 | 531 | 7.23e-12 | 68.9 |
| MS.gene048909.t1 | AT5G41780 | 26.170 | 470 | 272 | 17 | 230 | 680 | 118 | 531 | 7.23e-12 | 68.9 |
| MS.gene048909.t1 | AT5G41780 | 26.170 | 470 | 272 | 17 | 230 | 680 | 118 | 531 | 7.23e-12 | 68.9 |
| MS.gene048909.t1 | AT5G41780 | 26.170 | 470 | 272 | 17 | 230 | 680 | 118 | 531 | 7.23e-12 | 68.9 |
Find 125 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTGTGCATAAAGAAAT+TGG | 0.208825 | 4.2:+4676652 | None:intergenic |
| ACCACTTGCTGAATTTATTA+AGG | 0.209893 | 4.2:-4676691 | MS.gene048909:CDS |
| GAAGGAACCACTTGCTAAAT+TGG | 0.223145 | 4.2:-4677143 | MS.gene048909:CDS |
| GTTCTTTGTCACGGATATTT+TGG | 0.227889 | 4.2:+4675878 | None:intergenic |
| GATAGCAGGTGAGTTGTTTA+TGG | 0.227997 | 4.2:+4677110 | None:intergenic |
| AGATCAGAAGGTTGCTGATT+TGG | 0.238878 | 4.2:-4676007 | MS.gene048909:CDS |
| TGGAGGAGCTGCAGGGTAAA+AGG | 0.272472 | 4.2:-4675528 | MS.gene048909:CDS |
| AGAACAATTGCTAAGTGAAA+TGG | 0.332179 | 4.2:-4675860 | MS.gene048909:CDS |
| CTCGACATTCTCAACCAAAA+AGG | 0.335300 | 4.2:+4675930 | None:intergenic |
| CCATTTCAAGTTCTGAAACT+TGG | 0.340446 | 4.2:+4677047 | None:intergenic |
| TGAAGAGCTAGAGAAGTTGA+TGG | 0.348600 | 4.2:-4675392 | MS.gene048909:CDS |
| GGGAGAGAAAATAGATCATT+TGG | 0.349193 | 4.2:-4676346 | MS.gene048909:CDS |
| TATCTGTTATCAATCTTATC+AGG | 0.349896 | 4.2:-4677000 | MS.gene048909:CDS |
| TGATAAAGAAAAGCAGCTTC+AGG | 0.360145 | 4.2:-4677660 | MS.gene048909:CDS |
| GTTGAGAATGTCGAGAATCT+TGG | 0.368175 | 4.2:-4675922 | MS.gene048909:CDS |
| TTGAGAATGTCGAGAATCTT+GGG | 0.369897 | 4.2:-4675921 | MS.gene048909:CDS |
| TCCCTCTTCAAAACTTCTGC+CGG | 0.370296 | 4.2:+4676714 | None:intergenic |
| CCAAGTTTCAGAACTTGAAA+TGG | 0.380164 | 4.2:-4677047 | MS.gene048909:CDS |
| AAATTGGAGACAAAGTAAAA+AGG | 0.384142 | 4.2:-4677518 | MS.gene048909:CDS |
| AGAGGAGGGTATGTTGAACT+TGG | 0.386544 | 4.2:-4675362 | MS.gene048909:CDS |
| CCATTTGTTGGAGGAGCTGC+AGG | 0.387223 | 4.2:-4675536 | MS.gene048909:CDS |
| TGGTTCAACAGTGTGATATC+TGG | 0.388765 | 4.2:-4675703 | MS.gene048909:CDS |
| CCAGAAAGCAAAAGAAGAAA+TGG | 0.390780 | 4.2:-4676283 | MS.gene048909:CDS |
| CCGGGGTGCCATCCTCATTA+AGG | 0.392615 | 4.2:+4676733 | None:intergenic |
| ATCAGAGAGCACTTCAAATC+AGG | 0.394359 | 4.2:-4675798 | MS.gene048909:CDS |
| AAATTGAAGACAAAGTAAAA+AGG | 0.397832 | 4.2:-4676782 | MS.gene048909:CDS |
| GAAGAGTTTCGTCAAGGCAT+TGG | 0.413187 | 4.2:-4676036 | MS.gene048909:CDS |
| AGGAAAAGAGGGAGGCCATC+AGG | 0.414307 | 4.2:-4675336 | MS.gene048909:CDS |
| TAGGAATGAGATAAGTAAAC+TGG | 0.415967 | 4.2:-4676388 | MS.gene048909:CDS |
| AGAGAGGAAGATGGAAATAA+TGG | 0.417316 | 4.2:-4676061 | MS.gene048909:CDS |
| CCCTCTTCAAAACTTCTGCC+GGG | 0.420248 | 4.2:+4676715 | None:intergenic |
| AAACATCTCACATGAGCTTC+AGG | 0.428923 | 4.2:-4675620 | MS.gene048909:CDS |
| GAACAATTGCTAAGTGAAAT+GGG | 0.430358 | 4.2:-4675859 | MS.gene048909:CDS |
| CATCTTGAGGGAGCTAAAAC+AGG | 0.431653 | 4.2:-4677402 | MS.gene048909:intron |
| AAAAGCAAATAAATGATCAT+AGG | 0.431804 | 4.2:-4676407 | MS.gene048909:CDS |
| AAGAGTTTCGTCAAGGCATT+GGG | 0.436849 | 4.2:-4676035 | MS.gene048909:CDS |
| CAGCTTCAGGGAGCTAAAAC+AGG | 0.439095 | 4.2:-4677647 | MS.gene048909:intron |
| GCTAGAGGCAAAGGCAAGAA+AGG | 0.439791 | 4.2:-4675470 | MS.gene048909:CDS |
| GATGGGTTCACACTGCTCTC+TGG | 0.439915 | 4.2:+4675236 | None:intergenic |
| TTGTACCTTCTTTAGCTCCC+TGG | 0.440010 | 4.2:+4676933 | None:intergenic |
| TATGTTGCTGAATTATCTCC+AGG | 0.440631 | 4.2:+4676484 | None:intergenic |
| GATGACAAACTTGGCGAAGA+TGG | 0.444149 | 4.2:-4677477 | MS.gene048909:CDS |
| GAAGTTGATGGAAGAGAAAG+AGG | 0.449076 | 4.2:-4675380 | MS.gene048909:CDS |
| AAATTCACGCATACATGATA+AGG | 0.453812 | 4.2:+4676518 | None:intergenic |
| GGCACAGGAGAATTTGTTGA+TGG | 0.454836 | 4.2:-4676367 | MS.gene048909:CDS |
| CTTATTAAAGATGACAAACT+TGG | 0.459122 | 4.2:-4677486 | MS.gene048909:CDS |
| CACAATATGAAGAGCAAGCA+AGG | 0.466447 | 4.2:-4676638 | MS.gene048909:CDS |
| TTCACACTGCTCTCTGGCCC+CGG | 0.474554 | 4.2:+4675242 | None:intergenic |
| TGCTATCATGATCATCTTGA+GGG | 0.474969 | 4.2:-4677414 | MS.gene048909:CDS |
| TGATAAAGAAAAGCAGCTCC+AGG | 0.475782 | 4.2:-4676951 | MS.gene048909:CDS |
| ACCACTTGCTAAATTGGTTG+AGG | 0.479278 | 4.2:-4677137 | MS.gene048909:CDS |
| CAATTCAGCTAGTTCTGCTC+TGG | 0.482325 | 4.2:+4677452 | None:intergenic |
| GTTTGCAGATTGATTATCAC+AGG | 0.484671 | 4.2:-4675306 | MS.gene048909:CDS |
| CATCTAGAGGGGCACAACTT+AGG | 0.484981 | 4.2:-4677079 | MS.gene048909:CDS |
| TGAACTTGGGAGAGGAAAAG+AGG | 0.486625 | 4.2:-4675348 | MS.gene048909:CDS |
| GAACTTGGGAGAGGAAAAGA+GGG | 0.487533 | 4.2:-4675347 | MS.gene048909:CDS |
| CCTGCAGCTCCTCCAACAAA+TGG | 0.491576 | 4.2:+4675536 | None:intergenic |
| GGAGGAGCTGCAGGGTAAAA+GGG | 0.492835 | 4.2:-4675527 | MS.gene048909:CDS |
| TGAAGTTGCAGAGAGGAAGA+TGG | 0.500394 | 4.2:-4676070 | MS.gene048909:CDS |
| GATAAAGAAAAGCAGCTTCA+GGG | 0.501153 | 4.2:-4677659 | MS.gene048909:CDS |
| CTAGAGGCAAAGGCAAGAAA+GGG | 0.502275 | 4.2:-4675469 | MS.gene048909:CDS |
| TCCTCAACCAATTTAGCAAG+TGG | 0.510155 | 4.2:+4677136 | None:intergenic |
| CAGCTCCAGGGAGCTAAAGA+AGG | 0.520930 | 4.2:-4676938 | MS.gene048909:intron |
| TAATGATCACTACCTTAATG+AGG | 0.530750 | 4.2:-4676745 | MS.gene048909:CDS |
| TTCATTGTCAACCACTGCGA+GGG | 0.532211 | 4.2:+4676221 | None:intergenic |
| ATTCATATCAAAGACTCGCC+GGG | 0.532708 | 4.2:-4675260 | MS.gene048909:CDS |
| TTAGCAATTGTTCTTTGTCA+CGG | 0.532960 | 4.2:+4675869 | None:intergenic |
| AAGGGAAGAGGAATTAACTC+TGG | 0.534555 | 4.2:-4675509 | MS.gene048909:CDS |
| TGAGATAAGTAAACTGGCAC+AGG | 0.534623 | 4.2:-4676382 | MS.gene048909:CDS |
| TGAATTTAATAAGTCCCTCC+TGG | 0.534643 | 4.2:-4676502 | MS.gene048909:CDS |
| TTGATGGAAGAGAAAGAGGA+GGG | 0.537216 | 4.2:-4675376 | MS.gene048909:CDS |
| CCTTCTTCAAAAGTTCTGCT+CGG | 0.538720 | 4.2:+4677161 | None:intergenic |
| GGAGTCCAAAGAAAGAGAAA+AGG | 0.538947 | 4.2:-4677026 | MS.gene048909:CDS |
| GGTTGAAAAGCTAGAGGCAA+AGG | 0.542679 | 4.2:-4675479 | MS.gene048909:CDS |
| TAGATGATCATGAAGATAGC+AGG | 0.544022 | 4.2:+4677096 | None:intergenic |
| TCCTTAATAAATTCAGCAAG+TGG | 0.545699 | 4.2:+4676690 | None:intergenic |
| GAGGAGGGTATGTTGAACTT+GGG | 0.547070 | 4.2:-4675361 | MS.gene048909:CDS |
| TCAATAAAATGAACAAGGAA+AGG | 0.549546 | 4.2:-4675582 | MS.gene048909:CDS |
| AATTCATATCAAAGACTCGC+CGG | 0.556514 | 4.2:-4675261 | MS.gene048909:CDS |
| GTTGATGGAAGAGAAAGAGG+AGG | 0.560634 | 4.2:-4675377 | MS.gene048909:CDS |
| GGGTATGTTGAACTTGGGAG+AGG | 0.563137 | 4.2:-4675356 | MS.gene048909:CDS |
| CTGCTATCATGATCATCTTG+AGG | 0.563301 | 4.2:-4677415 | MS.gene048909:CDS |
| AGGGAAGAGGAATTAACTCT+GGG | 0.570351 | 4.2:-4675508 | MS.gene048909:CDS |
| CCTCTTCAAAACTTCTGCCG+GGG | 0.580729 | 4.2:+4676716 | None:intergenic |
| AATGGGAGAGAGCTTTAGAA+AGG | 0.581902 | 4.2:-4675842 | MS.gene048909:CDS |
| CTGCAAACAAAGCTGCCTGA+TGG | 0.585782 | 4.2:+4675321 | None:intergenic |
| GGAGCGCAATGACTATCTAA+AGG | 0.585903 | 4.2:-4675284 | MS.gene048909:CDS |
| GCTGCAGGGTAAAAGGGAAG+AGG | 0.586054 | 4.2:-4675521 | MS.gene048909:CDS |
| ATGAAAAGCTTCATTGTCAG+CGG | 0.588252 | 4.2:+4675750 | None:intergenic |
| TATCTTCATGATCATCTAGA+GGG | 0.588339 | 4.2:-4677091 | MS.gene048909:CDS |
| CATTGGGTCAAAAGATCAGA+AGG | 0.590474 | 4.2:-4676019 | MS.gene048909:CDS |
| GCACAGGAGAATTTGTTGAT+GGG | 0.590821 | 4.2:-4676366 | MS.gene048909:CDS |
| TGCTACTGCAGAAGCAACAA+TGG | 0.597727 | 4.2:-4675773 | MS.gene048909:CDS |
| TATGACAAACTTGACGAGGA+TGG | 0.601073 | 4.2:-4677187 | MS.gene048909:CDS |
| CTATCTTCATGATCATCTAG+AGG | 0.607415 | 4.2:-4677092 | MS.gene048909:CDS |
| ATAAAATGAACAAGGAAAGG+AGG | 0.612530 | 4.2:-4675579 | MS.gene048909:CDS |
| TTTCATTGTCAACCACTGCG+AGG | 0.613283 | 4.2:+4676220 | None:intergenic |
| TCCTACAGAAATTTATGACA+AGG | 0.617898 | 4.2:-4677236 | MS.gene048909:intron |
| GATCACTACCTTAATGAGGA+TGG | 0.627075 | 4.2:-4676741 | MS.gene048909:CDS |
| CCTTAATGAGGATGGCACCC+CGG | 0.628053 | 4.2:-4676733 | MS.gene048909:CDS |
| TTGCTGAATTATCTCCAGGA+GGG | 0.629209 | 4.2:+4676488 | None:intergenic |
| AGTTCTGAAACTTGGTTCCG+CGG | 0.631255 | 4.2:+4677055 | None:intergenic |
| TAGAGGCAAAGGCAAGAAAG+GGG | 0.635133 | 4.2:-4675468 | MS.gene048909:CDS |
| GATAAAGAAAAGCAGCTCCA+GGG | 0.645057 | 4.2:-4676950 | MS.gene048909:CDS |
| TTTGCAGATTGATTATCACA+GGG | 0.655274 | 4.2:-4675305 | MS.gene048909:CDS |
| TGAGAATGTCGAGAATCTTG+GGG | 0.660209 | 4.2:-4675920 | MS.gene048909:CDS |
| AGAGGCAAAGGCAAGAAAGG+GGG | 0.662607 | 4.2:-4675467 | MS.gene048909:CDS |
| CTATCACAAGTACTAAAGAG+TGG | 0.663853 | 4.2:-4675723 | MS.gene048909:CDS |
| CATGTGAGATGTTTGAGATG+CGG | 0.669216 | 4.2:+4675629 | None:intergenic |
| ATATATCAATAAAATGAACA+AGG | 0.669640 | 4.2:-4675587 | MS.gene048909:CDS |
| AGGGGCACAACTTAGGTCCG+CGG | 0.670503 | 4.2:-4677072 | MS.gene048909:CDS |
| GTTGCTGAATTATCTCCAGG+AGG | 0.672896 | 4.2:+4676487 | None:intergenic |
| TAAATATGACAAACTTGACG+AGG | 0.676853 | 4.2:-4677191 | MS.gene048909:CDS |
| TAAACAAGATTCAGTTCACG+TGG | 0.677408 | 4.2:-4676463 | MS.gene048909:CDS |
| ATGGCGGAAGAGTTTCGTCA+AGG | 0.679047 | 4.2:-4676042 | MS.gene048909:CDS |
| GGAAAAGGTTGAAAAGCTAG+AGG | 0.680606 | 4.2:-4675485 | MS.gene048909:CDS |
| ACAATATGAAGAGCAAGCAA+GGG | 0.681780 | 4.2:-4676637 | MS.gene048909:CDS |
| TTCATATCAAAGACTCGCCG+GGG | 0.684979 | 4.2:-4675259 | MS.gene048909:CDS |
| ATCTTCATGATCATCTAGAG+GGG | 0.685380 | 4.2:-4677090 | MS.gene048909:CDS |
| CTTGGGAGAGGAAAAGAGGG+AGG | 0.688336 | 4.2:-4675344 | MS.gene048909:CDS |
| GAGGAAGATGGAAATAATGG+CGG | 0.690602 | 4.2:-4676058 | MS.gene048909:CDS |
| CATTTGTTGGAGGAGCTGCA+GGG | 0.693707 | 4.2:-4675535 | MS.gene048909:CDS |
| GGAAGAGGAATTAACTCTGG+GGG | 0.701523 | 4.2:-4675506 | MS.gene048909:CDS |
| TCAAACTTGAAGTTGCAGAG+AGG | 0.717424 | 4.2:-4676077 | MS.gene048909:CDS |
| GGGAAGAGGAATTAACTCTG+GGG | 0.768423 | 4.2:-4675507 | MS.gene048909:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATCAATAAAATGAACA+AGG | - | chr4.2:4677339-4677358 | MS.gene048909:intron | 15.0% |
| !!! | AGGAAAAGTATAAAAAAAAA+AGG | + | chr4.2:4675384-4675403 | None:intergenic | 15.0% |
| !! | AAAAGCAAATAAATGATCAT+AGG | - | chr4.2:4676519-4676538 | MS.gene048909:CDS | 20.0% |
| !! | AAATTGAAGACAAAGTAAAA+AGG | - | chr4.2:4676144-4676163 | MS.gene048909:CDS | 20.0% |
| !!! | TATACTTTTCCTATAGAAAT+TGG | - | chr4.2:4675392-4675411 | MS.gene048909:CDS | 20.0% |
| ! | AAATTGGAGACAAAGTAAAA+AGG | - | chr4.2:4675408-4675427 | MS.gene048909:CDS | 25.0% |
| ! | CATATTGTGCATAAAGAAAT+TGG | + | chr4.2:4676277-4676296 | None:intergenic | 25.0% |
| ! | CTTATTAAAGATGACAAACT+TGG | - | chr4.2:4675440-4675459 | MS.gene048909:CDS | 25.0% |
| ! | TATCTGTTATCAATCTTATC+AGG | - | chr4.2:4675926-4675945 | MS.gene048909:CDS | 25.0% |
| ! | TCAATAAAATGAACAAGGAA+AGG | - | chr4.2:4677344-4677363 | MS.gene048909:intron | 25.0% |
| ! | TGATTTATGTATATCAGCTT+TGG | - | chr4.2:4675631-4675650 | MS.gene048909:CDS | 25.0% |
| !! | AGAAAATAACATCACCTTTT+TGG | - | chr4.2:4676982-4677001 | MS.gene048909:CDS | 25.0% |
| !! | GATTTTTGTATATCACCTTA+TGG | - | chr4.2:4676079-4676098 | MS.gene048909:CDS | 25.0% |
| !!! | TGTTATTTTCTTTCTTTTCC+AGG | + | chr4.2:4676973-4676992 | None:intergenic | 25.0% |
| AAATTCACGCATACATGATA+AGG | + | chr4.2:4676411-4676430 | None:intergenic | 30.0% | |
| ACAGCAGAATTGTGATATAA+TGG | - | chr4.2:4675339-4675358 | MS.gene048909:CDS | 30.0% | |
| ACCTTGTCATAAATTTCTGT+AGG | + | chr4.2:4675694-4675713 | None:intergenic | 30.0% | |
| ACTTCTGAATTGTGATATGA+TGG | - | chr4.2:4676031-4676050 | MS.gene048909:CDS | 30.0% | |
| ACTTTGTCTCCAATTTCTAT+AGG | + | chr4.2:4675404-4675423 | None:intergenic | 30.0% | |
| AGAACAATTGCTAAGTGAAA+TGG | - | chr4.2:4677066-4677085 | MS.gene048909:CDS | 30.0% | |
| ATAAAATGAACAAGGAAAGG+AGG | - | chr4.2:4677347-4677366 | MS.gene048909:intron | 30.0% | |
| ATATCACAATTCAGAAGTCA+TGG | + | chr4.2:4676029-4676048 | None:intergenic | 30.0% | |
| GAACAATTGCTAAGTGAAAT+GGG | - | chr4.2:4677067-4677086 | MS.gene048909:CDS | 30.0% | |
| GACAGATAAAAACCATTTGT+TGG | - | chr4.2:4677378-4677397 | MS.gene048909:intron | 30.0% | |
| GAGACAAAGTAAAAAGGATT+TGG | - | chr4.2:4675414-4675433 | MS.gene048909:CDS | 30.0% | |
| GGATGATCAAACAAATGATT+TGG | - | chr4.2:4675652-4675671 | MS.gene048909:CDS | 30.0% | |
| TAAATATGACAAACTTGACG+AGG | - | chr4.2:4675735-4675754 | MS.gene048909:CDS | 30.0% | |
| TAATGATCACTACCTTAATG+AGG | - | chr4.2:4676181-4676200 | MS.gene048909:CDS | 30.0% | |
| TAGGAATGAGATAAGTAAAC+TGG | - | chr4.2:4676538-4676557 | MS.gene048909:CDS | 30.0% | |
| TATCTTCATGATCATCTAGA+GGG | - | chr4.2:4675835-4675854 | MS.gene048909:CDS | 30.0% | |
| TCCTACAGAAATTTATGACA+AGG | - | chr4.2:4675690-4675709 | MS.gene048909:CDS | 30.0% | |
| TCCTTAATAAATTCAGCAAG+TGG | + | chr4.2:4676239-4676258 | None:intergenic | 30.0% | |
| TGAATTAGCCAACAAAAACA+TGG | - | chr4.2:4676733-4676752 | MS.gene048909:CDS | 30.0% | |
| TTAGCAATTGTTCTTTGTCA+CGG | + | chr4.2:4677060-4677079 | None:intergenic | 30.0% | |
| TTTGCAGATTGATTATCACA+GGG | - | chr4.2:4677621-4677640 | MS.gene048909:intron | 30.0% | |
| ! | ACCACTTGCTGAATTTATTA+AGG | - | chr4.2:4676235-4676254 | MS.gene048909:CDS | 30.0% |
| ! | AGATAAAAACCATTTGTTGG+AGG | - | chr4.2:4677381-4677400 | MS.gene048909:intron | 30.0% |
| ! | TAGTTCCTTTTCTCTTTCTT+TGG | + | chr4.2:4675908-4675927 | None:intergenic | 30.0% |
| AATTCATATCAAAGACTCGC+CGG | - | chr4.2:4677665-4677684 | MS.gene048909:CDS | 35.0% | |
| ACAATATGAAGAGCAAGCAA+GGG | - | chr4.2:4676289-4676308 | MS.gene048909:CDS | 35.0% | |
| AGAGAGGAAGATGGAAATAA+TGG | - | chr4.2:4676865-4676884 | MS.gene048909:intron | 35.0% | |
| ATATCACAATTCAGTGGTCA+TGG | + | chr4.2:4675582-4675601 | None:intergenic | 35.0% | |
| ATATCACAATTCTGCTGTCA+TGG | + | chr4.2:4675337-4675356 | None:intergenic | 35.0% | |
| ATCTTCATGATCATCTAGAG+GGG | - | chr4.2:4675836-4675855 | MS.gene048909:CDS | 35.0% | |
| ATGAAAAGCTTCATTGTCAG+CGG | + | chr4.2:4677179-4677198 | None:intergenic | 35.0% | |
| CCAAGTTTCAGAACTTGAAA+TGG | - | chr4.2:4675879-4675898 | MS.gene048909:CDS | 35.0% | |
| CCAGAAAGCAAAAGAAGAAA+TGG | - | chr4.2:4676643-4676662 | MS.gene048909:CDS | 35.0% | |
| CTATCACAAGTACTAAAGAG+TGG | - | chr4.2:4677203-4677222 | MS.gene048909:CDS | 35.0% | |
| CTATCTTCATGATCATCTAG+AGG | - | chr4.2:4675834-4675853 | MS.gene048909:CDS | 35.0% | |
| GATAAAGAAAAGCAGCTTCA+GGG | - | chr4.2:4675267-4675286 | MS.gene048909:CDS | 35.0% | |
| GGGAGAGAAAATAGATCATT+TGG | - | chr4.2:4676580-4676599 | MS.gene048909:CDS | 35.0% | |
| GGTGCATAGTGTAATTATGT+GGG | + | chr4.2:4675316-4675335 | None:intergenic | 35.0% | |
| GTTTGCAGATTGATTATCAC+AGG | - | chr4.2:4677620-4677639 | MS.gene048909:intron | 35.0% | |
| TAAACAAGATTCAGTTCACG+TGG | - | chr4.2:4676463-4676482 | MS.gene048909:CDS | 35.0% | |
| TAGATGATCATGAAGATAGC+AGG | + | chr4.2:4675833-4675852 | None:intergenic | 35.0% | |
| TATGTTGCTGAATTATCTCC+AGG | + | chr4.2:4676445-4676464 | None:intergenic | 35.0% | |
| TCTGTCATATCACAATTCAG+TGG | + | chr4.2:4675588-4675607 | None:intergenic | 35.0% | |
| TGAATTTAATAAGTCCCTCC+TGG | - | chr4.2:4676424-4676443 | MS.gene048909:CDS | 35.0% | |
| TGATAAAGAAAAGCAGCTTC+AGG | - | chr4.2:4675266-4675285 | MS.gene048909:CDS | 35.0% | |
| TGCTATCATGATCATCTTGA+GGG | - | chr4.2:4675512-4675531 | MS.gene048909:CDS | 35.0% | |
| TGGTGCATAGTGTAATTATG+TGG | + | chr4.2:4675317-4675336 | None:intergenic | 35.0% | |
| TTGAGAATGTCGAGAATCTT+GGG | - | chr4.2:4677005-4677024 | MS.gene048909:CDS | 35.0% | |
| ! | CCATTTCTTCTTTTGCTTTC+TGG | + | chr4.2:4676646-4676665 | None:intergenic | 35.0% |
| ! | GTTCTTTGTCACGGATATTT+TGG | + | chr4.2:4677051-4677070 | None:intergenic | 35.0% |
| ! | TCTTTTCCAGGTCTTTTTTC+AGG | + | chr4.2:4676961-4676980 | None:intergenic | 35.0% |
| ! | TTCTTCTTTTGCTTTCTGGA+GGG | + | chr4.2:4676642-4676661 | None:intergenic | 35.0% |
| ! | TTTCTTCTTTTGCTTTCTGG+AGG | + | chr4.2:4676643-4676662 | None:intergenic | 35.0% |
| !! | CCATTTCAAGTTCTGAAACT+TGG | + | chr4.2:4675882-4675901 | None:intergenic | 35.0% |
| !! | CTGAAGATCCATGTTTTTGT+TGG | + | chr4.2:4676744-4676763 | None:intergenic | 35.0% |
| !! | TGCGGTTCTCAATATTTTTG+TGG | + | chr4.2:4677282-4677301 | None:intergenic | 35.0% |
| !!! | CTTTTTTCAGGTCTTCAACT+TGG | + | chr4.2:4676949-4676968 | None:intergenic | 35.0% |
| !!! | TGAAGCTGCTTTTCTTTATC+AGG | + | chr4.2:4675267-4675286 | None:intergenic | 35.0% |
| AAACATCTCACATGAGCTTC+AGG | - | chr4.2:4677306-4677325 | MS.gene048909:intron | 40.0% | |
| AAGGGAAGAGGAATTAACTC+TGG | - | chr4.2:4677417-4677436 | MS.gene048909:CDS | 40.0% | |
| AGGGAAGAGGAATTAACTCT+GGG | - | chr4.2:4677418-4677437 | MS.gene048909:CDS | 40.0% | |
| ATTCATATCAAAGACTCGCC+GGG | - | chr4.2:4677666-4677685 | MS.gene048909:CDS | 40.0% | |
| CACAATATGAAGAGCAAGCA+AGG | - | chr4.2:4676288-4676307 | MS.gene048909:CDS | 40.0% | |
| CATTGGGTCAAAAGATCAGA+AGG | - | chr4.2:4676907-4676926 | MS.gene048909:intron | 40.0% | |
| CATTTGTTCGAGCTACCATA+AGG | + | chr4.2:4676097-4676116 | None:intergenic | 40.0% | |
| CCTTCTTCAAAAGTTCTGCT+CGG | + | chr4.2:4675768-4675787 | None:intergenic | 40.0% | |
| CTCGACATTCTCAACCAAAA+AGG | + | chr4.2:4676999-4677018 | None:intergenic | 40.0% | |
| CTGCTATCATGATCATCTTG+AGG | - | chr4.2:4675511-4675530 | MS.gene048909:CDS | 40.0% | |
| GAGGAAGATGGAAATAATGG+CGG | - | chr4.2:4676868-4676887 | MS.gene048909:intron | 40.0% | |
| GATAAAGAAAAGCAGCTCCA+GGG | - | chr4.2:4675976-4675995 | MS.gene048909:CDS | 40.0% | |
| GATAGCAGGTGAGTTGTTTA+TGG | + | chr4.2:4675819-4675838 | None:intergenic | 40.0% | |
| GATCACTACCTTAATGAGGA+TGG | - | chr4.2:4676185-4676204 | MS.gene048909:CDS | 40.0% | |
| GGAAAAGGTTGAAAAGCTAG+AGG | - | chr4.2:4677441-4677460 | MS.gene048909:CDS | 40.0% | |
| GGAGTCCAAAGAAAGAGAAA+AGG | - | chr4.2:4675900-4675919 | MS.gene048909:CDS | 40.0% | |
| GGTAGCTCGAACAAATGATT+TGG | - | chr4.2:4676100-4676119 | MS.gene048909:CDS | 40.0% | |
| GGTGCAAAGTGTAATTGTGT+GGG | + | chr4.2:4675561-4675580 | None:intergenic | 40.0% | |
| GTTGAGAATGTCGAGAATCT+TGG | - | chr4.2:4677004-4677023 | MS.gene048909:CDS | 40.0% | |
| TATGACAAACTTGACGAGGA+TGG | - | chr4.2:4675739-4675758 | MS.gene048909:CDS | 40.0% | |
| TCAAACTTGAAGTTGCAGAG+AGG | - | chr4.2:4676849-4676868 | MS.gene048909:intron | 40.0% | |
| TCCTCAACCAATTTAGCAAG+TGG | + | chr4.2:4675793-4675812 | None:intergenic | 40.0% | |
| TGAAGACCTGAAAAAAGACC+TGG | - | chr4.2:4676952-4676971 | MS.gene048909:CDS | 40.0% | |
| TGAAGAGCTAGAGAAGTTGA+TGG | - | chr4.2:4677534-4677553 | MS.gene048909:intron | 40.0% | |
| TGAGAATGTCGAGAATCTTG+GGG | - | chr4.2:4677006-4677025 | MS.gene048909:CDS | 40.0% | |
| TGAGATAAGTAAACTGGCAC+AGG | - | chr4.2:4676544-4676563 | MS.gene048909:CDS | 40.0% | |
| TGATAAAGAAAAGCAGCTCC+AGG | - | chr4.2:4675975-4675994 | MS.gene048909:CDS | 40.0% | |
| TGGTGCAAAGTGTAATTGTG+TGG | + | chr4.2:4675562-4675581 | None:intergenic | 40.0% | |
| TGGTTCAACAGTGTGATATC+TGG | - | chr4.2:4677223-4677242 | MS.gene048909:CDS | 40.0% | |
| TTGATGGAAGAGAAAGAGGA+GGG | - | chr4.2:4677550-4677569 | MS.gene048909:intron | 40.0% | |
| TTGCTGAATTATCTCCAGGA+GGG | + | chr4.2:4676441-4676460 | None:intergenic | 40.0% | |
| ! | AAGAGTTTCGTCAAGGCATT+GGG | - | chr4.2:4676891-4676910 | MS.gene048909:intron | 40.0% |
| ! | ACCACTTGCTAAATTGGTTG+AGG | - | chr4.2:4675789-4675808 | MS.gene048909:CDS | 40.0% |
| ! | AGATCAGAAGGTTGCTGATT+TGG | - | chr4.2:4676919-4676938 | MS.gene048909:intron | 40.0% |
| ! | CATGTGAGATGTTTGAGATG+CGG | + | chr4.2:4677300-4677319 | None:intergenic | 40.0% |
| ! | GAAGGAACCACTTGCTAAAT+TGG | - | chr4.2:4675783-4675802 | MS.gene048909:CDS | 40.0% |
| !! | AATGGGAGAGAGCTTTAGAA+AGG | - | chr4.2:4677084-4677103 | MS.gene048909:CDS | 40.0% |
| !! | ATCAGAGAGCACTTCAAATC+AGG | - | chr4.2:4677128-4677147 | MS.gene048909:CDS | 40.0% |
| !! | GAAGTTGATGGAAGAGAAAG+AGG | - | chr4.2:4677546-4677565 | MS.gene048909:intron | 40.0% |
| !! | GCACAGGAGAATTTGTTGAT+GGG | - | chr4.2:4676560-4676579 | MS.gene048909:CDS | 40.0% |
| CATCTTGAGGGAGCTAAAAC+AGG | - | chr4.2:4675524-4675543 | MS.gene048909:CDS | 45.0% | |
| CTAGAGGCAAAGGCAAGAAA+GGG | - | chr4.2:4677457-4677476 | MS.gene048909:CDS | 45.0% | |
| GAACTTGGGAGAGGAAAAGA+GGG | - | chr4.2:4677579-4677598 | MS.gene048909:intron | 45.0% | |
| GAAGAGTTTCGTCAAGGCAT+TGG | - | chr4.2:4676890-4676909 | MS.gene048909:intron | 45.0% | |
| GATGACAAACTTGGCGAAGA+TGG | - | chr4.2:4675449-4675468 | MS.gene048909:CDS | 45.0% | |
| GGAAGAGGAATTAACTCTGG+GGG | - | chr4.2:4677420-4677439 | MS.gene048909:CDS | 45.0% | |
| GGAGCGCAATGACTATCTAA+AGG | - | chr4.2:4677642-4677661 | MS.gene048909:intron | 45.0% | |
| GGGAAGAGGAATTAACTCTG+GGG | - | chr4.2:4677419-4677438 | MS.gene048909:CDS | 45.0% | |
| GGTTGAAAAGCTAGAGGCAA+AGG | - | chr4.2:4677447-4677466 | MS.gene048909:CDS | 45.0% | |
| GTTGCTGAATTATCTCCAGG+AGG | + | chr4.2:4676442-4676461 | None:intergenic | 45.0% | |
| TAGAGGCAAAGGCAAGAAAG+GGG | - | chr4.2:4677458-4677477 | MS.gene048909:CDS | 45.0% | |
| TCCCTCTTCAAAACTTCTGC+CGG | + | chr4.2:4676215-4676234 | None:intergenic | 45.0% | |
| TGAACTTGGGAGAGGAAAAG+AGG | - | chr4.2:4677578-4677597 | MS.gene048909:intron | 45.0% | |
| TGAAGTTGCAGAGAGGAAGA+TGG | - | chr4.2:4676856-4676875 | MS.gene048909:intron | 45.0% | |
| TGCTACTGCAGAAGCAACAA+TGG | - | chr4.2:4677153-4677172 | MS.gene048909:CDS | 45.0% | |
| TTCATATCAAAGACTCGCCG+GGG | - | chr4.2:4677667-4677686 | MS.gene048909:CDS | 45.0% | |
| TTCATTGTCAACCACTGCGA+GGG | + | chr4.2:4676708-4676727 | None:intergenic | 45.0% | |
| TTTCATTGTCAACCACTGCG+AGG | + | chr4.2:4676709-4676728 | None:intergenic | 45.0% | |
| ! | AGAGGAGGGTATGTTGAACT+TGG | - | chr4.2:4677564-4677583 | MS.gene048909:intron | 45.0% |
| ! | GAGGAGGGTATGTTGAACTT+GGG | - | chr4.2:4677565-4677584 | MS.gene048909:intron | 45.0% |
| ! | GGAATTAACTCTGGGGGAAA+AGG | - | chr4.2:4677426-4677445 | MS.gene048909:CDS | 45.0% |
| ! | GTTGATGGAAGAGAAAGAGG+AGG | - | chr4.2:4677549-4677568 | MS.gene048909:intron | 45.0% |
| ! | TTGTACCTTCTTTAGCTCCC+TGG | + | chr4.2:4675996-4676015 | None:intergenic | 45.0% |
| !! | AGTTCTGAAACTTGGTTCCG+CGG | + | chr4.2:4675874-4675893 | None:intergenic | 45.0% |
| !! | CAATTCAGCTAGTTCTGCTC+TGG | + | chr4.2:4675477-4675496 | None:intergenic | 45.0% |
| !! | CCGAGCAGAACTTTTGAAGA+AGG | - | chr4.2:4675765-4675784 | MS.gene048909:CDS | 45.0% |
| !! | GGCACAGGAGAATTTGTTGA+TGG | - | chr4.2:4676559-4676578 | MS.gene048909:CDS | 45.0% |
| ACATGCAAAAACCCTCGCAG+TGG | - | chr4.2:4676694-4676713 | MS.gene048909:CDS | 50.0% | |
| AGAGGCAAAGGCAAGAAAGG+GGG | - | chr4.2:4677459-4677478 | MS.gene048909:CDS | 50.0% | |
| CAGCTTCAGGGAGCTAAAAC+AGG | - | chr4.2:4675279-4675298 | MS.gene048909:CDS | 50.0% | |
| CCCTCTTCAAAACTTCTGCC+GGG | + | chr4.2:4676214-4676233 | None:intergenic | 50.0% | |
| CCTCTTCAAAACTTCTGCCG+GGG | + | chr4.2:4676213-4676232 | None:intergenic | 50.0% | |
| CTGCAAACAAAGCTGCCTGA+TGG | + | chr4.2:4677608-4677627 | None:intergenic | 50.0% | |
| GCTAGAGGCAAAGGCAAGAA+AGG | - | chr4.2:4677456-4677475 | MS.gene048909:CDS | 50.0% | |
| GGGTATGTTGAACTTGGGAG+AGG | - | chr4.2:4677570-4677589 | MS.gene048909:intron | 50.0% | |
| ! | ATGGCGGAAGAGTTTCGTCA+AGG | - | chr4.2:4676884-4676903 | MS.gene048909:intron | 50.0% |
| ! | CATCTAGAGGGGCACAACTT+AGG | - | chr4.2:4675847-4675866 | MS.gene048909:CDS | 50.0% |
| ! | CATTTGTTGGAGGAGCTGCA+GGG | - | chr4.2:4677391-4677410 | MS.gene048909:intron | 50.0% |
| !!! | CCCGGCAGAAGTTTTGAAGA+GGG | - | chr4.2:4676211-4676230 | MS.gene048909:CDS | 50.0% |
| AGGAAAAGAGGGAGGCCATC+AGG | - | chr4.2:4677590-4677609 | MS.gene048909:intron | 55.0% | |
| CAGCTCCAGGGAGCTAAAGA+AGG | - | chr4.2:4675988-4676007 | MS.gene048909:CDS | 55.0% | |
| CCTGCAGCTCCTCCAACAAA+TGG | + | chr4.2:4677393-4677412 | None:intergenic | 55.0% | |
| CCTTAATGAGGATGGCACCC+CGG | - | chr4.2:4676193-4676212 | MS.gene048909:CDS | 55.0% | |
| CTTGGGAGAGGAAAAGAGGG+AGG | - | chr4.2:4677582-4677601 | MS.gene048909:intron | 55.0% | |
| GCTGCAGGGTAAAAGGGAAG+AGG | - | chr4.2:4677405-4677424 | MS.gene048909:CDS | 55.0% | |
| GGAGGAGCTGCAGGGTAAAA+GGG | - | chr4.2:4677399-4677418 | MS.gene048909:intron | 55.0% | |
| TGGAGGAGCTGCAGGGTAAA+AGG | - | chr4.2:4677398-4677417 | MS.gene048909:intron | 55.0% | |
| ! | CCATTTGTTGGAGGAGCTGC+AGG | - | chr4.2:4677390-4677409 | MS.gene048909:intron | 55.0% |
| !!! | CCCCGGCAGAAGTTTTGAAG+AGG | - | chr4.2:4676210-4676229 | MS.gene048909:CDS | 55.0% |
| ! | AGGGGCACAACTTAGGTCCG+CGG | - | chr4.2:4675854-4675873 | MS.gene048909:CDS | 60.0% |
| ! | CCGGGGTGCCATCCTCATTA+AGG | + | chr4.2:4676196-4676215 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 4675243 | 4677705 | 4675243 | ID=MS.gene048909 |
| chr4.2 | mRNA | 4675243 | 4677705 | 4675243 | ID=MS.gene048909.t1;Parent=MS.gene048909 |
| chr4.2 | exon | 4677648 | 4677705 | 4677648 | ID=MS.gene048909.t1.exon1;Parent=MS.gene048909.t1 |
| chr4.2 | CDS | 4677648 | 4677705 | 4677648 | ID=cds.MS.gene048909.t1;Parent=MS.gene048909.t1 |
| chr4.2 | exon | 4677403 | 4677540 | 4677403 | ID=MS.gene048909.t1.exon2;Parent=MS.gene048909.t1 |
| chr4.2 | CDS | 4677403 | 4677540 | 4677403 | ID=cds.MS.gene048909.t1;Parent=MS.gene048909.t1 |
| chr4.2 | exon | 4676939 | 4677250 | 4676939 | ID=MS.gene048909.t1.exon3;Parent=MS.gene048909.t1 |
| chr4.2 | CDS | 4676939 | 4677250 | 4676939 | ID=cds.MS.gene048909.t1;Parent=MS.gene048909.t1 |
| chr4.2 | exon | 4675243 | 4676804 | 4675243 | ID=MS.gene048909.t1.exon4;Parent=MS.gene048909.t1 |
| chr4.2 | CDS | 4675243 | 4676804 | 4675243 | ID=cds.MS.gene048909.t1;Parent=MS.gene048909.t1 |
| Gene Sequence |
| Protein sequence |
