AlfalfaGEDB | MS.gene90400

M. sativa cultivar XinJiangDaYe / MS.gene90400

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90400.t1	XP_003595879.3	98.2	571	9	1	1	570	1	571	2.00E-304	1054.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90400.t1	Q1PFB9	69.4	438	116	5	150	570	119	555	2.3e-171	603.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90400.t1	A0A396JGZ8	98.2	571	9	1	1	570	1	571	1.5e-304	1054.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene003144	MS.gene90400	PPI
MS.gene010910	MS.gene90400	PPI
MS.gene022109	MS.gene90400	PPI
MS.gene027441	MS.gene90400	PPI
MS.gene037950	MS.gene90400	PPI
MS.gene039682	MS.gene90400	PPI
MS.gene042783	MS.gene90400	PPI
MS.gene048267	MS.gene90400	PPI
MS.gene048910	MS.gene90400	PPI
MS.gene050270	MS.gene90400	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90400.t1	MTR_2g062850	98.230	565	9	1	7	570	1	565	0.0	1150
MS.gene90400.t1	MTR_8g446990	62.153	576	165	12	1	570	1	529	0.0	677
MS.gene90400.t1	MTR_2g027240	62.528	451	155	8	130	570	158	604	0.0	563
MS.gene90400.t1	MTR_8g006870	64.371	421	114	7	133	524	307	720	0.0	537
MS.gene90400.t1	MTR_7g081665	59.488	469	145	10	136	570	304	761	0.0	536
MS.gene90400.t1	MTR_7g033640	49.498	598	250	13	5	570	41	618	4.45e-179	519
MS.gene90400.t1	MTR_6g004720	57.778	450	162	7	126	570	204	630	5.53e-179	520
MS.gene90400.t1	MTR_1g060790	57.377	427	164	6	150	570	445	859	4.21e-164	489
MS.gene90400.t1	MTR_7g104180	60.660	394	148	5	140	530	459	848	1.15e-163	488
MS.gene90400.t1	MTR_3g010260	59.314	408	154	5	142	539	382	787	1.81e-159	475

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene90400.t1	AT1G79250	72.160	449	104	9	140	570	110	555	646
MS.gene90400.t1	AT1G79250	72.160	449	104	9	140	570	110	555	646
MS.gene90400.t1	AT1G79250	72.160	449	104	9	140	570	110	555	646
MS.gene90400.t1	AT1G79250	72.160	449	104	9	140	570	110	555	646
MS.gene90400.t1	AT3G12690	71.395	430	106	5	149	570	157	577	626
MS.gene90400.t1	AT3G12690	71.395	430	106	5	149	570	157	577	626
MS.gene90400.t1	AT3G12690	71.395	430	106	5	149	570	157	577	626
MS.gene90400.t1	AT1G16440	70.023	427	109	8	150	570	86	499	606
MS.gene90400.t1	AT5G55910	59.283	474	163	7	114	570	38	498	547
MS.gene90400.t1	AT5G55910	59.283	474	163	7	114	570	38	498	547

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Find 102 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGACTTCGGCCTAT+TGG	0.376017	2.3:+31614039	MS.gene90400:CDS
AAACCGCCTTCCTGAATTAA+TGG	0.294493	2.3:+31614069	MS.gene90400:CDS
AAATGACATTGATCTTACAT+TGG	0.536629	2.3:-31614101	None:intergenic
AACATTAGGCCACATACTGG+TGG	0.650784	2.3:+31612878	MS.gene90400:CDS
AACCAGACAGTAAAACTTAT+CGG	0.395042	2.3:-31613170	None:intergenic
AACTTCTTATCAACTGGTGG+TGG	0.533626	2.3:-31614517	None:intergenic
AAGAGAATTGCATATAAAAG+AGG	0.501521	2.3:+31614370	MS.gene90400:CDS
AAGGTGGGATGCAATTAACA+TGG	0.670858	2.3:+31612907	MS.gene90400:CDS
AAGTCGTCCTCCACCCACGG+AGG	0.748275	2.3:+31613899	MS.gene90400:CDS
AATACAAAGACGAACAATCA+AGG	0.539318	2.3:+31612794	MS.gene90400:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCAGACAGTAAAACTTAT+CGG	-	chr2.3:31613173-31613192	None:intergenic	30.0%
AACGGTAATTTCAACCAATA+CGG	-	chr2.3:31612346-31612365	None:intergenic	30.0%
AATACAAAGACGAACAATCA+AGG	+	chr2.3:31612794-31612813	MS.gene90400:CDS	30.0%
AATTACCGTTGTGATATCAT+TGG	+	chr2.3:31612356-31612375	MS.gene90400:intron	30.0%
AGAATACAAAGTAGGCAAAA+AGG	-	chr2.3:31613140-31613159	None:intergenic	30.0%
ATTAACATGGCTTCCAAAAA+TGG	+	chr2.3:31612920-31612939	MS.gene90400:CDS	30.0%
CAAGTTGTTCATCAAACATT+AGG	+	chr2.3:31612864-31612883	MS.gene90400:CDS	30.0%
CAATTCACTCCTTCAAAAAA+TGG	-	chr2.3:31614418-31614437	None:intergenic	30.0%
CGTTTAGTCCTTAAAATTGT+AGG	+	chr2.3:31613457-31613476	MS.gene90400:intron	30.0%
CTAAAATGGGTAAGATTTAG+AGG	-	chr2.3:31612947-31612966	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	31612182	31614612	31612182	ID=MS.gene90400
chr2.3	mRNA	31612182	31614612	31612182	ID=MS.gene90400.t1;Parent=MS.gene90400
chr2.3	exon	31612182	31612199	31612182	ID=MS.gene90400.t1.exon1;Parent=MS.gene90400.t1
chr2.3	CDS	31612182	31612199	31612182	ID=cds.MS.gene90400.t1;Parent=MS.gene90400.t1
chr2.3	exon	31612455	31613272	31612455	ID=MS.gene90400.t1.exon2;Parent=MS.gene90400.t1
chr2.3	CDS	31612455	31613272	31612455	ID=cds.MS.gene90400.t1;Parent=MS.gene90400.t1
chr2.3	exon	31613736	31614612	31613736	ID=MS.gene90400.t1.exon3;Parent=MS.gene90400.t1
chr2.3	CDS	31613736	31614612	31613736	ID=cds.MS.gene90400.t1;Parent=MS.gene90400.t1

Gene Sequence

>MS.gene90400

ATGCCTGATTTACCAGAGGTAAGAGTTTCATCATATTTTATTCTACACATGCACAATAGCTATAAGTCCATGGTTTCTTAAGTAAAAGATACAACATTGATTTTAAGTTGCAGCCGCGATTGCAGTTACAAAGTGAACATTTTTAATGCGGGAAAATGTGGCCGTATTGGTTGAAATTACCGTTGTGATATCATTGGCTGAAATTTGCATTTGTGCACATTATTCATGATTGCAAAAACTTGATCAAAACTTATGTTTCATTCATATATGCAGATGAATCACAATACATCAGAAGAACATTTTGAGACACATCATAATGCTCGTAGTTATCCGAATTCAGGAAACAATTCACCAACTCATCACAAAAAGTTTAATAATGAAGAAAAAGAAGCATACAAAAATGAATATTCAGCAAGTGAATCTACTAAAAATATAGACCAAGTTTCTAAAACAGATTCAAATTCTGCAAATAAAACTAGACCACAGAAACTAAGTCCACCAAACAAAAACATTCCTGATGCTTTCTTAAGACAAAGTCCAAGGAACAGGATGCCTTCAAATTCTGATGCTGCAACTCCATTACCATCAGGAGTTTCAAAGGGTATGTCGACTAATACAAAGACGAACAATCAAGGTGCGCCAGGAAGTGGAGCTAGCTCGCGAAGCGACAGTTTAGAGAGCACAAGTTGTTCATCAAACATTAGGCCACATACTGGTGGTGATATAAGGTGGGATGCAATTAACATGGCTTCCAAAAATGGTCCTCTAAATCTTACCCATTTTAGGCTTCTGAAGCGTATCGGTTATGGAGACATTGGAAGTGTTTATCTTGTTGAACTTAAAGGAACTGATGCTCATTTTGCTATGAAAGTAATGGACAAGGCTGCTCTTATAAGTAGAAACAAACTTCTTAGATCACAAACTGAAAGGGAGATTCTTGGACTTCTTGATCATCCCTTTTTGCCTACTTTGTATTCTTACTTTGAGACCGATAAGTTTTACTGTCTGGTTATGGAGTATTGTAGTGGCGGTGATCTTCATTCGCTTCGACAGAAACAACCAAATAAGTGTTTCACTGAAGAAGCTGCAAGGTTAGTTGAATCTGTTTGCAGCATTTCCTCATTTGTTCTTCTATTTTTCTACATATAGTTCACAAGACATTGAAAAGTAACTATAACTTCATATAAGTTGATATATTATGTTTTTGCACACAATGCAATTGCATGTCTGTATTGAACTTAACAAACTGTGATTCCTTTATTCAAGTGAATTGTGCGTTTAGTCCTTAAAATTGTAGGGGTCAGGAAATGTGGTCTGTAAAATTAACGAAATTTTGGAAATCCTCGATCACGTTAATTCTTTTGAGTCAGTCAATTTAGTCACTGATATTGTCTAAGGTGAACTAATGTGATCGATTAATTTCAAGTACTAAATTGTCTGACTCTACAATTCAGTTTAGCCTACTGTCATGACAGACTTCTGCTAGAAATTTGATTTAACCTTGATAATTCAGTTTGTTGATAAGAATCTTATGTTTCAAATCTCTTTTGATAGGTTCTATGCTTCCGAGGTTTTGTTAGCTCTTGAATACCTACACATGCTTGGCATTGTATACCGAGACTTAAAGCCAGAAAATCTTTTAGTTAGGGACGAAGGTCACATCATGCTCTCAGATTTCGATTTATCACTTCGCTGTTCTGTCTGTCCAACACTTGTTAAGTCGTCCTCCACCCACGGAGGAAACAGCAGCGGCAATAGTGATTCCGGAGGTATATTGAATGATGACCAAGCAGTGATTGCTCAGTCATCAACAAGCTTCTTCCCTCGCATTTTACCTTCGAAGAAAAATCGAAAAGCAAAATCAGACTTCGGCCTATTGGTTAACGGAAACCGCCTTCCTGAATTAATGGCAGAACCAACCAATGTAAGATCAATGTCATTTGTAGGGACACACGAGTATCTCGCACCTGAAATCATCAAAGGAGAAGGACACGGTAGCGCGGTAGATTGGTGGACTTTCGGTATCTTCTTGTATGAACTGTTGCATGGTGCAACGCCTTTTAAAGGCGCAGGATACAAAGCGACACTTTTTAATGTTGTTGGTCAGCCATTAAGGTTTCCAGATAGTCCTCAAATTAGTCCTGTGGCTAGAGATCTTATTAGAGGATTGTTGATTAAGGAACCTCAGAAGAGAATTGCATATAAAAGAGGAGCAACAGAAATAAAACAGCATCCATTTTTTGAAGGAGTGAATTGGGCTCTTGTTAGAAGTGCAACACCACCACATATACCAGATGCTATAGACTTTTCAAAGTATGCTAAAAAAGAAACAGCACCACCACCAGTTGATAAGAAGTTGCCAGATGTTACCAATGATAAAAAGGGCAAAACTTCAACTGATAATTCTTATGTAGATTTTGAGTATTTTTAG

Protein sequence

>MS.gene90400.t1

MPDLPEMNHNTSEEHFETHHNARSYPNSGNNSPTHHKKFNNEEKEAYKNEYSASESTKNIDQVSKTDSNSANKTRPQKLSPPNKNIPDAFLRQSPRNRMPSNSDAATPLPSGVSKGMSTNTKTNNQGAPGSGASSRSDSLESTSCSSNIRPHTGGDIRWDAINMASKNGPLNLTHFRLLKRIGYGDIGSVYLVELKGTDAHFAMKVMDKAALISRNKLLRSQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEYCSGGDLHSLRQKQPNKCFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVCPTLVKSSSTHGGNSSGNSDSGGILNDDQAVIAQSSTSFFPRILPSKKNRKAKSDFGLLVNGNRLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGATPFKGAGYKATLFNVVGQPLRFPDSPQISPVARDLIRGLLIKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSATPPHIPDAIDFSKYAKKETAPPPVDKKLPDVTNDKKGKTSTDNSYVDFEYF