AlfalfaGEDB | MS.gene047578

M. sativa cultivar XinJiangDaYe / MS.gene047578

KEGG: K09495
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0006457 GO:0008144 GO:0008150 GO:0009987 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0051082 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00118.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047578.t1	XP_003593572.2	99.1	555	5	0	1	555	1	555	0.00E+00	1080.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047578.t1	Q84WV1	89.5	555	58	0	1	555	1	555	1.4e-290	999.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047578.t1	G7IPS8	99.1	555	5	0	1	555	1	555	0.0e+00	1080.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene005792	MS.gene047578	PPI
MS.gene009372	MS.gene047578	PPI
MS.gene009874	MS.gene047578	PPI
MS.gene013506	MS.gene047578	PPI
MS.gene014682	MS.gene047578	PPI
MS.gene01952	MS.gene047578	PPI
MS.gene026610	MS.gene047578	PPI
MS.gene031181	MS.gene047578	PPI
MS.gene031183	MS.gene047578	PPI
MS.gene031184	MS.gene047578	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047578.t1	MTR_2g013540	99.099	555	5	0	1	555	1	555	0.0	1125
MS.gene047578.t1	MTR_2g013540	99.261	406	3	0	150	555	1	406	0.0	829
MS.gene047578.t1	MTR_5g087560	32.163	541	350	5	1	533	5	536	1.88e-94	299
MS.gene047578.t1	MTR_3g086330	33.461	523	332	9	9	524	18	531	2.90e-89	285
MS.gene047578.t1	MTR_8g088270	30.697	531	347	8	13	527	13	538	1.42e-71	239
MS.gene047578.t1	MTR_3g109925	30.528	511	344	7	20	524	25	530	2.79e-71	238
MS.gene047578.t1	MTR_1g030650	29.063	523	345	12	24	538	29	533	1.16e-67	228
MS.gene047578.t1	MTR_6g032870	28.755	546	361	12	1	538	5	530	4.45e-66	224
MS.gene047578.t1	MTR_7g406870	26.966	534	348	10	22	532	20	534	7.37e-66	223
MS.gene047578.t1	MTR_7g113470	29.848	526	347	11	7	524	6	517	2.76e-63	216

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047578.t1	AT5G26360	89.550	555	58	0	1	555	1	555	0.0	1017
MS.gene047578.t1	AT3G11830	33.457	541	343	5	1	533	5	536	6.84e-95	300
MS.gene047578.t1	AT3G11830	33.272	541	342	6	1	533	5	534	3.08e-92	293
MS.gene047578.t1	AT1G24510	34.549	521	329	8	9	524	18	531	1.45e-90	288
MS.gene047578.t1	AT3G18190	31.418	522	342	9	10	524	22	534	1.96e-77	254
MS.gene047578.t1	AT1G24510	32.787	488	311	9	42	524	3	478	2.96e-76	249
MS.gene047578.t1	AT1G24510	32.900	462	298	8	68	524	1	455	2.60e-72	238
MS.gene047578.t1	AT3G20050	30.114	528	352	6	14	527	14	538	3.75e-71	238
MS.gene047578.t1	AT3G03960	27.778	522	353	11	24	538	32	536	6.66e-65	221
MS.gene047578.t1	AT5G20890	29.356	528	347	10	7	524	6	517	7.18e-62	213

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Find 131 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCTAAGATTGAGACCG+AGG	0.639722	2.1:-71349886	MS.gene047578:CDS
AAATGCAGGAGGACAAATGT+TGG	0.537076	2.1:-71352868	MS.gene047578:intron
AAATTATATCAAGGTTGAGA+AGG	0.566760	2.1:-71351447	MS.gene047578:CDS
AACAAAGATGTGGTTGCCCC+TGG	0.456951	2.1:-71351374	MS.gene047578:CDS
AACCGAATTGCCAAGGCATG+CGG	0.607588	2.1:-71351071	MS.gene047578:CDS
AACTTCTTAAAGAAGAAGAC+TGG	0.529976	2.1:-71351262	MS.gene047578:CDS
AAGAAGCAGGCCCCTGGAGC+AGG	0.394021	2.1:-71349915	MS.gene047578:CDS
AAGATGCTTCTTGATGCTTC+TGG	0.319424	2.1:-71354525	MS.gene047578:CDS
AAGCATCTTTAGCATGGACC+TGG	0.533448	2.1:+71354539	None:intergenic
AAGCATGCATGCAGCTTCAA+TGG	0.478250	2.1:+71349971	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAGCTAACGCGTAAA+GGG	+	chr2.1:71349892-71349911	None:intergenic	30.0%
AAAAAGCAACCTGATAAATC+AGG	+	chr2.1:71352235-71352254	None:intergenic	30.0%
AAAAGCAACCTGATAAATCA+GGG	+	chr2.1:71352234-71352253	None:intergenic	30.0%
AAACAAAGAGAAAGTAAACG+TGG	+	chr2.1:71351869-71351888	None:intergenic	30.0%
AAAGAATTTAGGAGGTTCTA+AGG	+	chr2.1:71353305-71353324	None:intergenic	30.0%
AAATACTAGTTCCAAGGATT+AGG	+	chr2.1:71353392-71353411	None:intergenic	30.0%
AACTTCTTAAAGAAGAAGAC+TGG	-	chr2.1:71354395-71354414	MS.gene047578:intron	30.0%
AAGCAAACAGAATTGCAATA+TGG	+	chr2.1:71352691-71352710	None:intergenic	30.0%
AATAGAAGTTAAAGAAGACC+AGG	+	chr2.1:71355282-71355301	None:intergenic	30.0%
AATCAAGAAGAATGATACGT+GGG	+	chr2.1:71354333-71354352	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	71349851	71355828	71349851	ID=MS.gene047578
chr2.1	mRNA	71349851	71355828	71349851	ID=MS.gene047578.t1;Parent=MS.gene047578
chr2.1	exon	71355804	71355828	71355804	ID=MS.gene047578.t1.exon1;Parent=MS.gene047578.t1
chr2.1	CDS	71355804	71355828	71355804	ID=cds.MS.gene047578.t1;Parent=MS.gene047578.t1
chr2.1	exon	71354700	71354761	71354700	ID=MS.gene047578.t1.exon2;Parent=MS.gene047578.t1
chr2.1	CDS	71354700	71354761	71354700	ID=cds.MS.gene047578.t1;Parent=MS.gene047578.t1
chr2.1	exon	71354523	71354595	71354523	ID=MS.gene047578.t1.exon3;Parent=MS.gene047578.t1
chr2.1	CDS	71354523	71354595	71354523	ID=cds.MS.gene047578.t1;Parent=MS.gene047578.t1
chr2.1	exon	71353931	71353998	71353931	ID=MS.gene047578.t1.exon4;Parent=MS.gene047578.t1
chr2.1	CDS	71353931	71353998	71353931	ID=cds.MS.gene047578.t1;Parent=MS.gene047578.t1
chr2.1	exon	71353681	71353750	71353681	ID=MS.gene047578.t1.exon5;Parent=MS.gene047578.t1
chr2.1	CDS	71353681	71353750	71353681	ID=cds.MS.gene047578.t1;Parent=MS.gene047578.t1
chr2.1	exon	71353324	71353392	71353324	ID=MS.gene047578.t1.exon6;Parent=MS.gene047578.t1
chr2.1	CDS	71353324	71353392	71353324	ID=cds.MS.gene047578.t1;Parent=MS.gene047578.t1
chr2.1	exon	71353170	71353241	71353170	ID=MS.gene047578.t1.exon7;Parent=MS.gene047578.t1
chr2.1	CDS	71353170	71353241	71353170	ID=cds.MS.gene047578.t1;Parent=MS.gene047578.t1
chr2.1	exon	71352809	71352882	71352809	ID=MS.gene047578.t1.exon8;Parent=MS.gene047578.t1
chr2.1	CDS	71352809	71352882	71352809	ID=cds.MS.gene047578.t1;Parent=MS.gene047578.t1
chr2.1	exon	71350878	71351540	71350878	ID=MS.gene047578.t1.exon9;Parent=MS.gene047578.t1
chr2.1	CDS	71350878	71351540	71350878	ID=cds.MS.gene047578.t1;Parent=MS.gene047578.t1
chr2.1	exon	71350673	71350798	71350673	ID=MS.gene047578.t1.exon10;Parent=MS.gene047578.t1
chr2.1	CDS	71350673	71350798	71350673	ID=cds.MS.gene047578.t1;Parent=MS.gene047578.t1
chr2.1	exon	71350448	71350552	71350448	ID=MS.gene047578.t1.exon11;Parent=MS.gene047578.t1
chr2.1	CDS	71350448	71350552	71350448	ID=cds.MS.gene047578.t1;Parent=MS.gene047578.t1
chr2.1	exon	71350289	71350363	71350289	ID=MS.gene047578.t1.exon12;Parent=MS.gene047578.t1
chr2.1	CDS	71350289	71350363	71350289	ID=cds.MS.gene047578.t1;Parent=MS.gene047578.t1
chr2.1	exon	71349851	71350036	71349851	ID=MS.gene047578.t1.exon13;Parent=MS.gene047578.t1
chr2.1	CDS	71349851	71350036	71349851	ID=cds.MS.gene047578.t1;Parent=MS.gene047578.t1

Gene Sequence

>MS.gene047578

ATGCAGTCCTCAGTTGTAGTTCTCAGTAAGTTCTCTCTCCCTTTACGCGTTAGCTTTTTTTGTTCTAAATGACTCATGGAAGTGATTTAATATTTCGTATGAGTTCATGTTTGTCTGGGGACAAAAATTGATTCCGAGTGAACTGGTTTTATGTATGTTTGGTTTTGATTTGAGAAAAAAATGATTTCGAATGTATTGATTATGGTTAAAATTCAGTTGAATGTGAAGTGATTTATGTTTGTATTCATCAATGAAAAAGTGAGTTGAACAGTAAGTTTGAGTGTAAAAATCAGTTCTTGAATTAGAAGATACAATTTCTTGTTTCAAGTAGAATCAAATCTGGAGGAAAATCAATTCTACACTGCTAGAATCAATTATGCCTCCAAAAGTGGAACCAAACACACTTTGTGAAATTGATTTTAGTTAAAAGTGACTTGAATGTGCAATGGTTTATGTTTTGGATAGAGTCACGTAAAAGTGATTGTGTATTGGTTTATGTTTTGGATAGCATTACATAGAAGTGAGATGAACAATAAGTTTGAGTGTAAGAATCATGTTTGGAGTCAAAAGCTACAAATCCTAGCTTCAAGTTAGAATCAAGCATGAAGACAAGATTAATCCTATTCGAGAATAGACAAACATGAAAAAAAAATCAATTCTACACCTCCCAATCAATTTTCTCTCCAGAATCATTTGGTAATAAAATAATTTGCCATATTTTGTTTTCACATTAGAGAATGCATTATGGAAGTTTTTGAAAATGATTTTAAACATAGGTTGGATATTGAAAAGCCTAAAAAAAAATTTAACGTTGTTTTCAGTGTTTCTTTCTCTCTAGTTAGGTTCCATTTTATATCTGTCCACATTTTAAAAGAATAATCTATAGCCATATATCATTTCAGCCACCCATGTACAAAGTTAAAATTGAGAATGTTGTTAGAAAATAAGCGGGCTCTTAACCTTTGGTTTTAATTCTGATGTGTTTTAATATTCGATTTCTGTTATACATTTAAGCATAGCTTTTTAAATATGGAGTGGTTCATTAAATCCACGCTTTAAATGTGCAGAGGACTCTTTGAAACGTGAGTCTGGAGCAAAGGTGCATCATGCTAATATCCAGGCGTCAAAGGTGATCCTCTTACTGATTACCGACCAAAACTAAGTAGTGCTTGCTAATGTTTCTAAATATTCATTTGTTGTTTCTAATTTAATGTGGTTGTTGTTGACTGGAAGGCTGTTGCTGATATAATTCGTACAACATTGGGACCCAGGTCCATGCTAAAGATGCTTCTTGATGCTTCTGGAGGTTAGTGTTTTCATTACTTAATCAACTTATTGCCTACAAAGCACTGGCACTGATACGTCTACACCTGTAGTAATTTAAGAAAACAACATAATTGAATGTAATCCCATGTGTTGGTGTCATATCAGACACCGGACACACCTTCAATCATAAGTGTTGGTGCTACGGAGCTTATAGCTTATTAAGGACTATTGTGAATCACACTGTTTGCAATTGTCATTCACTGAGGTTCTAGCTTATTAAGGACTATTGTGAATCATACCGTTTGCAATTGTCATTCACCGAGGCTAAATATTTTCTTATTTGCATCGTTAGTGTCTGAGATGTACATAGTTTCTTGGTGATTGCAAGATGTGGTAATTTTTATAAGAGTTTGGAATTATTTGTGCTGTTTAACATCTTATGTAAGTTGTAGGTTCTGGGTATGAAATTGTTAATGTAACAGTGTTTATCTTAAATGTATAGTTTTATGTCTTGTTTTTCCGAGTACTTAGACACCTATTCTTTTTTCCTGTAAACTACAACAGGAATTGTGGTAACAAACGATGGAAATGCTATCTTACGTGAATTAGATATTGCTCATCCAGCTGCCAAGGTACTTGTCTCTCATTCTTCATTTTATTGATATTGCTTCGTGGTACATATATTGCCATATAGTACGTTCTTGCTCACGTCCTTTGAAGGCACAACTTTCTGGTTTGCATTGAATTTTCCACGTTTACTTTCTCTTTGTTTCATACTTTCTGAAATTGCTGGCTTATTGGAATGGCTACAGTCTATGATTGAATTAAGTCGCACCCAAGACGAAGAAGTCGGAGATGGAACCACATCTGTCATCATTCTTGGTATGCTATCTGTGCCTATATATATTGATGTTAAACATACATACCCACACAAATAACATCAGTAATTTTTGCCTAAAATTCCCTGATACCCGTAGTAATTTAAATTCTCCTCTCTGGTGTTAAGTTGCTTTGAACTGAGATTCTTTCACATGGTAACTTCGCTATTTTAGTACATGATTTAATATCAAATTCCAGAATGTGTTGTCATATACTAAATGGAAGATTACTTTTTCCCTGATTTATCAGGTTGCTTTTTCATATTTTCAATATCTCATCATTTTTGTGCAGCTGGTGAGATGCTCCATGTTGCCGAAGCTTTCATTGACAAGAACTATCATCCTACAGTTATTTGCCGAGGTAATGTATCGTATTAATCAGCGGTTCTTTCCTTACAGTATAAAATTGTGTACAATGACAGCTACAATTATGTAATTTGCAGCATATAACAAAGCTTTGGAGGATGCTATTGCTGCCATTGACAAAATTGCGATGCCTATTGATGCTCAAGACCGTAAGTTTTTTTTTCCTATCAAGATTGGTACATTTTTTTGTCACAAACCCTCCCAAGTGGATTTGCAAAAGTTCAGTGAGCTAAACTGTCAATTCTATATTCCGATTATTTATGGAGGTGGCACCTAGATAGATTGCACAAATAGTTTGTGGGCTGGGTAGTAATTCATAGTACAGGGCCATATTGCAATTCTGTTTGCTTCAAATTCTCCTAGCAGTATACATCACTCATCCTTTGAATTTCTTCTTGACATATAATCCCAATTCTATTGATGAACGAAAATGCAGGAGGACAAATGTTGGGGCTTGTAAAAAGCTGCATAGGCACCAAATTCACAAGTCAATTTGGGGATTTAATTGCTGTGAGTATATTTCTCTTGGCTATTATTTCCAAATATGATATTCTTTGCTCATTAATATTTTCAAACATTTTAGGTTGATGTTTAACTTGGTAATGTTAATTCTTAAACCAGATAACTGTAATTTTCTACCAAAGCACGGATTGATGTAATTTTTGTTAATCAATGCAATTGGTTATTATTCATGTGATGGTTATTGGCATCTAGACAACTGTGTTGATGTTAGGGAGGCACCACATCTTCATTACACTGTACTCCGTCCCAAGTTATAAGCAAAAAAAAAAAAAAAAAAAACCAAGATCAGACTTACTAAGAAAATCATTTAATATTCTAAAATTTACCAAACAAAATAGTTTTATTTCCTAAATTACCCTTCATAGTATTTTACACGCCACATTGAAAATCAAAACAACTAAATGACTATAATTCTTTCTCCTTAGAACCTCCTAAATTCTTTCTTGTTCACTGTTTGCAGTTGTACAATATTAAAAATACGAGCCGTCTAATGAAAACATCAGCCTCCTAATCCTTGGAACTAGTATTTCACGGTAATTGAGTAGATGTTTTGGAAAACATAACTCTAAATATCAAGGGTACTTTTGGAACAACAAATTTAAATTGGTCAAAATTAAAGTTTTTTGCTTATAATTTGGGTGAAAAAGGTGATTTTTTTGCTTATAATTTGAGACGGAGGGAGTAGTCATTTATTTGTTTTGATTTTCAATGTGGCGTGTAAAATACTATGAAGGGTAATTTAGGAAATAAAACTATTTTAGGAGTATTATTTTCCTTTTTCAATTCAACTGCTTTACATGCAGACCTAGCTAATAGTGTATAAATAATATCATTATTTGTGCTCTTGTTCTTTGGTTGTATTTGTTTCTGTTCGAGTGAACAGGACTAAAATTTAATGGGAAATGCTAACTTGTGCCCCAACTTGTGCCCTTGGGGCACAAGTTAGCATGACCCAAATTTAATGCTACTATAAGTACAGATAATTATTGCAGCCCTTTATAACTATAGCTGTGCACAACTGCATTCACTATTGTTAAATGATGGCTGTGGCGGTGCCGTGGCGGAATGGCATGGCAGATTTTTAGATAACCGTCTTAGACGATCCGTGAAGGGATGCCCACCATTGTGACGTTATAGGCCGCAATGGCGTGTTTATAGGGCTGATTTTCAGCTTTCCTCCATTAACAGCATTGATTGCATGACCTTTCTAGATCTATTGAATTATATTTAAAGTGTTGTCCTTGATTATACTCCAGGATTTAGCTATTGATGCTACTACAACAGTGGGTGTTGATATTGGCCATGGTTTAAGAGATGTAGATATTAAAAATTATATCAAGGTTGAGAAGGTCCCTGGTGCACAGCTTGAGGATTCGAGAGTTCTCAAGGGAGTAATGTTTAACAAAGATGTGGTTGCCCCTGGCAAGATGAGGAGAAAGATTGTTAACCCACGTATCATTCTTCTTGATTGCCCTCTTGAGTATAAAAAGGGTGAAAACCAAACAAATGCTGAACTTCTTAAAGAAGAAGACTGGAGTCTCTTGTTGAAGTTGGAGGAAGAATACATTGAGGAGCTCTGCATGCAGATATTGAAGTTTAAACCAGACTTGGTTGTTACAGAGAAGGGTCTTAGTGATTTGGCATGCCATTATCTGAGCAAGCATGGAGTTAGTGCAATCAGAAGACTGAGGAAAACTGATAATAACCGAATTGCCAAGGCATGCGGTGCTGTTATTGTGAACAGACCAGATGAGTTGCAGGAGTCTGATGTCGGTACTGGTGCTGGGTTATTTGAAGTTAAGAAAATTGGAGACGAGTACTTTGCTTTTATTGTTGATTGCAAAGAACCCAAAGCTTGTACTGTATTATTAAGGGGTGCTAGTAAGGATCTCTTGAATGAGGTTGAAAGAAACCTACAGGTTAGTTATTGATATTTTTATTTACTATTATCCAAACCTATTTGATCATGCTGCTTTCTGAAACTCTTTTGCATGCCAGGATGCCATGTCTGTTGCTAGGAACATAATAAAAAATCCAAAACTTGTTCCTGGAGGTGGTGCTACAGAGATGACTGTGTCAGCTGCTTTGAAACAGAAGAGTTCTTCTATCGAAGGCATTGAGAAGGTGAGTGTATTTCACTGTTGTTTCGTTGAACCAGTGGATGCTTCATCCATGTTCGATGGGTTTGAATTCCTAACTTTTAATTCATTCTGGTTCTAACTTTTAATTCTTGTTGATTATCAGTGGCCATATGAAGCTGCTGCCATTGCTTTTGAATCTATTCCACGTACTTTGGCACAAAATTGTGGAGTAAACGTCATCCGGACAATGACCGCACTACAAGGAAAAGTAAGAATAGTTTGCTACATATATTCTTTATGCTCTTTTCTCTGAAGCCTGGTCTTCTTTAACTTCTATTTTTGAAAATTATAGCATGCAAATGGAGAAAATGCATGGATTGGCATTGATGGAAATACTGGTGTCATTGCTGACATGAAAGAGCGCAAGGTACTTTATTTATTTTATTCTTGAAGTTTGCATATTGTAATTGAAACCGAAAACTATCCATCATTATTTTGCCAAAGTCACATTAGAGTTAGGACCTTCGTTATCCATTTATTTTTAAACGAGGCAACACAATGTAGAAATCCATGTTTATTTCAGTACAACGGATCATTGCGATTTACTGAGCACATGCTTAGTTGTCTTGTAAGTGTATATGTCAGCAATTGAACTCTGATGTTTTGTATTATGGGCTAGATCTGGGATGCCTATAATGTGAAGGCACAAACTTTTAAGACTGCCATTGAAGCTGCATGCATGCTTCTAAGGATTGATGATATAGTGAGTGGAATCAAGAAGAAGCAGGCCCCTGGAGCAGGCCCTTCAAAGCCTAAGATTGAGACCGAGGGAGATGCCGACGGCGAGCAAATCCTTCCAGACTGA

Protein sequence

>MS.gene047578.t1

MQSSVVVLKDSLKRESGAKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDIAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLHVAEAFIDKNYHPTVICRAYNKALEDAIAAIDKIAMPIDAQDRGQMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDIGHGLRDVDIKNYIKVEKVPGAQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDCPLEYKKGENQTNAELLKEEDWSLLLKLEEEYIEELCMQILKFKPDLVVTEKGLSDLACHYLSKHGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEYFAFIVDCKEPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATEMTVSAALKQKSSSIEGIEKWPYEAAAIAFESIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGVIADMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGAGPSKPKIETEGDADGEQILPD