Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048910.t1 | XP_013447170.2 | 82.6 | 734 | 124 | 1 | 1 | 730 | 1 | 734 | 4.10E-265 | 924.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048910.t1 | F4JZY1 | 65.1 | 43 | 13 | 1 | 688 | 728 | 1538 | 1580 | 1.0e-06 | 57.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048910.t1 | A0A072TUT3 | 81.3 | 659 | 119 | 1 | 76 | 730 | 1 | 659 | 1.2e-223 | 785.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048910 | MS.gene90400 | PPI |
| MS.gene54368 | MS.gene048910 | PPI |
| MS.gene048910 | MS.gene40883 | PPI |
| MS.gene048910 | MS.gene39948 | PPI |
| MS.gene048910 | MS.gene002442 | PPI |
| MS.gene048910 | MS.gene01091 | PPI |
| MS.gene048910 | MS.gene054884 | PPI |
| MS.gene048910 | MS.gene91179 | PPI |
| MS.gene048910 | MS.gene071322 | PPI |
| MS.gene048910 | MS.gene056066 | PPI |
| MS.gene005262 | MS.gene048910 | PPI |
| MS.gene048910 | MS.gene44133 | PPI |
| MS.gene048910 | MS.gene056067 | PPI |
| MS.gene048910 | MS.gene91529 | PPI |
| MS.gene048910 | MS.gene01425 | PPI |
| MS.gene048910 | MS.gene60920 | PPI |
| MS.gene048910 | MS.gene92243 | PPI |
| MS.gene048910 | MS.gene065848 | PPI |
| MS.gene048910 | MS.gene005205 | PPI |
| MS.gene048910 | MS.gene49380 | PPI |
| MS.gene048910 | MS.gene018136 | PPI |
| MS.gene048910 | MS.gene44072 | PPI |
| MS.gene048910 | MS.gene036192 | PPI |
| MS.gene048910 | MS.gene97766 | PPI |
| MS.gene048910 | MS.gene96757 | PPI |
| MS.gene048910 | MS.gene50540 | PPI |
| MS.gene048910 | MS.gene047578 | PPI |
| MS.gene048910 | MS.gene43392 | PPI |
| MS.gene020278 | MS.gene048910 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048910.t1 | MTR_8g099290 | 91.806 | 659 | 50 | 1 | 76 | 730 | 1 | 659 | 0.0 | 1165 |
| MS.gene048910.t1 | MTR_8g099275 | 65.954 | 702 | 156 | 8 | 78 | 730 | 556 | 1223 | 0.0 | 800 |
| MS.gene048910.t1 | MTR_8g099275 | 41.837 | 392 | 165 | 10 | 50 | 384 | 397 | 782 | 1.92e-52 | 197 |
| MS.gene048910.t1 | MTR_8g099275 | 62.857 | 70 | 13 | 2 | 6 | 62 | 18 | 87 | 2.71e-15 | 80.9 |
| MS.gene048910.t1 | MTR_8g099280 | 53.488 | 430 | 124 | 6 | 326 | 730 | 168 | 546 | 1.26e-118 | 367 |
| MS.gene048910.t1 | MTR_8g099280 | 73.611 | 72 | 16 | 1 | 1 | 72 | 1 | 69 | 2.76e-25 | 111 |
| MS.gene048910.t1 | MTR_8g099265 | 25.135 | 740 | 424 | 18 | 19 | 724 | 154 | 797 | 3.95e-28 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048910.t1 | AT5G41790 | 28.523 | 596 | 329 | 12 | 184 | 728 | 1031 | 1580 | 8.76e-38 | 152 |
| MS.gene048910.t1 | AT5G41790 | 36.548 | 197 | 94 | 3 | 58 | 230 | 1064 | 1253 | 3.34e-17 | 87.0 |
| MS.gene048910.t1 | AT5G41790 | 28.523 | 596 | 329 | 12 | 184 | 728 | 1031 | 1580 | 8.76e-38 | 152 |
| MS.gene048910.t1 | AT5G41790 | 36.548 | 197 | 94 | 3 | 58 | 230 | 1064 | 1253 | 3.34e-17 | 87.0 |
| MS.gene048910.t1 | AT1G64330 | 31.034 | 203 | 123 | 4 | 432 | 618 | 275 | 476 | 1.91e-12 | 70.9 |
Find 123 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTTCAAGTTCTGAAATT+TGG | 0.197686 | 4.2:+4668241 | None:intergenic |
| CCTCATCTCCTTTCTCTTCC+AGG | 0.214136 | 4.2:+4666936 | None:intergenic |
| TAGTTCCTCTTCTCTTTCTT+TGG | 0.220995 | 4.2:+4668215 | None:intergenic |
| AGATCAGATGGCAGCTGATT+TGG | 0.259482 | 4.2:-4666987 | MS.gene048910:CDS |
| GAACTTCCAAGTCAGATTTC+TGG | 0.263958 | 4.2:+4668037 | None:intergenic |
| GGAGGAGTTGCAGGGTAAAA+AGG | 0.265667 | 4.2:-4666561 | MS.gene048910:CDS |
| AGTGTTCAACTCACAGTCTT+TGG | 0.290321 | 4.2:+4667510 | None:intergenic |
| TTTCCAAGATAAGCTTAATA+AGG | 0.290572 | 4.2:-4667710 | MS.gene048910:CDS |
| CCATTTGTTGGAGGAGTTGC+AGG | 0.293583 | 4.2:-4666570 | MS.gene048910:CDS |
| GTTCTTCAGCTACACTCTTC+TGG | 0.293768 | 4.2:+4667542 | None:intergenic |
| CTGCCTTATTAAGCTTATCT+TGG | 0.303487 | 4.2:+4667707 | None:intergenic |
| ATTTGAGTTCTCTGCACTTC+AGG | 0.313512 | 4.2:-4667356 | MS.gene048910:CDS |
| AATCTTAATTTGCTCCTTGC+AGG | 0.324134 | 4.2:+4667657 | None:intergenic |
| GTCGATCGAAAAGCTGAAAT+TGG | 0.335030 | 4.2:-4667584 | MS.gene048910:CDS |
| AGGATCAACTCTGCAGAAAA+AGG | 0.348549 | 4.2:-4666534 | MS.gene048910:CDS |
| TTCTAAAGCTCTCTTCCTCT+TGG | 0.360119 | 4.2:+4666858 | None:intergenic |
| TGATAAAGAAAAGCAGCTTC+AGG | 0.360145 | 4.2:-4668529 | MS.gene048910:CDS |
| TAAGGCAGAGGAAGAATGTT+TGG | 0.360378 | 4.2:-4667692 | MS.gene048910:CDS |
| GTGGATAAGGAGTCTGGAAT+TGG | 0.394781 | 4.2:-4667890 | MS.gene048910:CDS |
| TGTGTCAACAGTATGATATC+TGG | 0.404527 | 4.2:-4666737 | MS.gene048910:CDS |
| CAGCGAGATGAGTAGGGAAC+AGG | 0.409754 | 4.2:-4666615 | MS.gene048910:CDS |
| AAAATTTAACGATGTGGATA+AGG | 0.413797 | 4.2:-4667903 | MS.gene048910:CDS |
| AGGAAAAGAGGGAGGCCATC+AGG | 0.414307 | 4.2:-4666370 | MS.gene048910:CDS |
| TCTCTTCCTCTTGGTTTGAC+AGG | 0.421163 | 4.2:+4666867 | None:intergenic |
| CCATCAGGCAGCTTTGTTTG+AGG | 0.432125 | 4.2:-4666355 | MS.gene048910:CDS |
| TGAAGACTCTTCCTCTGCCT+TGG | 0.433978 | 4.2:+4667324 | None:intergenic |
| GAAGTTGATAAAAGAGAAAG+AGG | 0.434583 | 4.2:-4666414 | MS.gene048910:CDS |
| CAGCTTCAGGGAGCTAAAAC+AGG | 0.439095 | 4.2:-4668516 | MS.gene048910:intron |
| CATGGAGCAAGAGAGACTTA+TGG | 0.443666 | 4.2:-4667935 | MS.gene048910:CDS |
| GATGACAAACTTGGCGAAGA+TGG | 0.444149 | 4.2:-4668348 | MS.gene048910:CDS |
| CATCTGCTATCATGATCATC+TGG | 0.444596 | 4.2:-4668289 | MS.gene048910:CDS |
| AGAGGAGGGTGTGTTGAACC+TGG | 0.450944 | 4.2:-4666396 | MS.gene048910:CDS |
| CCACTATTCTCCGAAGATCC+AGG | 0.451178 | 4.2:+4667134 | None:intergenic |
| GAATGTATTGCGGCAGGAAG+TGG | 0.451293 | 4.2:-4668073 | MS.gene048910:CDS |
| AACGATGTGGATAAGGAGTC+TGG | 0.451970 | 4.2:-4667896 | MS.gene048910:CDS |
| TTCAGAGAGCACTTGAAGAC+AGG | 0.456552 | 4.2:-4666811 | MS.gene048910:CDS |
| CATAAGTCTCTCTTGCTCCA+TGG | 0.457161 | 4.2:+4667936 | None:intergenic |
| CTTATTAAAGATGACAAACT+TGG | 0.459122 | 4.2:-4668357 | MS.gene048910:CDS |
| CCTGGATCTTCGGAGAATAG+TGG | 0.461420 | 4.2:-4667134 | MS.gene048910:CDS |
| GTTTGAGGATTGATTATCAC+AGG | 0.472341 | 4.2:-4666340 | MS.gene048910:CDS |
| CGAAGATGAAGAGCAAATAA+AGG | 0.476923 | 4.2:-4667839 | MS.gene048910:CDS |
| AAACATCTCATACGAGCTTC+AGG | 0.479335 | 4.2:-4666654 | MS.gene048910:CDS |
| AATATAAACACATCGATAGT+TGG | 0.483166 | 4.2:-4667096 | MS.gene048910:CDS |
| TTCATTGTCAACCATTGTGA+GGG | 0.483407 | 4.2:+4667180 | None:intergenic |
| CCTGCAACTCCTCCAACAAA+TGG | 0.483822 | 4.2:+4666570 | None:intergenic |
| TCGGAGAATAGTGGAAGAAC+GGG | 0.492348 | 4.2:-4667125 | MS.gene048910:CDS |
| AAGGCAGAGGAAGAGTCTTC+AGG | 0.498801 | 4.2:-4667322 | MS.gene048910:CDS |
| AAAGGATTTAAGCTCCTCTC+TGG | 0.498918 | 4.2:+4666270 | None:intergenic |
| GATAAAGAAAAGCAGCTTCA+GGG | 0.501153 | 4.2:-4668528 | MS.gene048910:CDS |
| GCAGAAAACAAAAGAAGAGT+TGG | 0.503519 | 4.2:-4667242 | MS.gene048910:CDS |
| GGGGCACAATTTAGAGTTGA+GGG | 0.505090 | 4.2:-4668265 | MS.gene048910:CDS |
| CGAAAAGCTGAAATTGGAGA+TGG | 0.508498 | 4.2:-4667578 | MS.gene048910:CDS |
| CCAAGTTGACAATCTGCAAA+AGG | 0.516726 | 4.2:-4667278 | MS.gene048910:CDS |
| AAGGAGTCTGGAATTGGAGA+TGG | 0.517960 | 4.2:-4667884 | MS.gene048910:CDS |
| AATATCCGATGAGAGAGAAT+CGG | 0.520995 | 4.2:-4667743 | MS.gene048910:CDS |
| CGTATGAGATGTTTGAGTTG+CGG | 0.521270 | 4.2:+4666663 | None:intergenic |
| AAAAGAGACCTGGAAGAGAA+AGG | 0.522300 | 4.2:-4666944 | MS.gene048910:CDS |
| ATTGTCAACTTGGGCTGTGA+AGG | 0.523312 | 4.2:+4667288 | None:intergenic |
| TCATCTGACACAGCAGAAGT+TGG | 0.523679 | 4.2:-4667797 | MS.gene048910:CDS |
| GTGTCAACAGTATGATATCT+GGG | 0.528872 | 4.2:-4666736 | MS.gene048910:CDS |
| TCAAATTCAAAGTCTGAAAG+AGG | 0.535899 | 4.2:-4667974 | MS.gene048910:CDS |
| GGATAAACTTTCCAAGGCAG+AGG | 0.537641 | 4.2:-4667335 | MS.gene048910:CDS |
| TGAAGACCTGAAAAGAGACC+TGG | 0.538192 | 4.2:-4666954 | MS.gene048910:CDS |
| TGAGGTGAATGTATTGCGGC+AGG | 0.539029 | 4.2:-4668079 | MS.gene048910:CDS |
| AATCTGTCAGCGAGATGAGT+AGG | 0.540179 | 4.2:-4666622 | MS.gene048910:CDS |
| TTTCATTGTCAACCATTGTG+AGG | 0.542166 | 4.2:+4667179 | None:intergenic |
| GGTTGAAAAGCTAGAGGCAA+AGG | 0.542679 | 4.2:-4666513 | MS.gene048910:CDS |
| TTCGGAGAATAGTGGAAGAA+CGG | 0.547270 | 4.2:-4667126 | MS.gene048910:CDS |
| ATGACTAATCGCTTGGATGT+TGG | 0.548668 | 4.2:+4667816 | None:intergenic |
| AAGTAATGAAGCTTCAACTC+GGG | 0.553568 | 4.2:-4668106 | MS.gene048910:CDS |
| GAAGTCCAAAGAAAGAGAAG+AGG | 0.554619 | 4.2:-4668220 | MS.gene048910:CDS |
| CATTGGTTCAAAAGATCAGA+TGG | 0.554870 | 4.2:-4666999 | MS.gene048910:CDS |
| TGAACCTGGGAGAGGAAAAG+AGG | 0.555646 | 4.2:-4666382 | MS.gene048910:CDS |
| TAAACTGACACAGGAGAAGT+TGG | 0.555933 | 4.2:-4667428 | MS.gene048910:CDS |
| TTGATAAAAGAGAAAGAGGA+GGG | 0.557130 | 4.2:-4666410 | MS.gene048910:CDS |
| GTTGATAAAAGAGAAAGAGG+AGG | 0.557587 | 4.2:-4666411 | MS.gene048910:CDS |
| ACAACACCAGAAATCTGACT+TGG | 0.566725 | 4.2:-4668043 | MS.gene048910:CDS |
| GGGTGTGTTGAACCTGGGAG+AGG | 0.567444 | 4.2:-4666390 | MS.gene048910:CDS |
| GTGTCAGATGACTAATCGCT+TGG | 0.569201 | 4.2:+4667809 | None:intergenic |
| AAATTGAAGACAAAGTAAGA+AGG | 0.571110 | 4.2:-4668389 | MS.gene048910:CDS |
| AGAGGAAGAGAGCTTTAGAA+AGG | 0.575491 | 4.2:-4666855 | MS.gene048910:CDS |
| CTGCACGTTTAAGTTTGACC+TGG | 0.575917 | 4.2:+4667062 | None:intergenic |
| ATAAAGAAAATTTAACGATG+TGG | 0.577744 | 4.2:-4667909 | MS.gene048910:CDS |
| AGCTTCAACTCGGGCCGATG+AGG | 0.578024 | 4.2:-4668097 | MS.gene048910:CDS |
| ATCTGTCAGCGAGATGAGTA+GGG | 0.578642 | 4.2:-4666621 | MS.gene048910:CDS |
| GGAGCGCAATGACTATCTAA+AGG | 0.579083 | 4.2:-4666318 | MS.gene048910:CDS |
| ACTTCAGGATAAACTTTCCA+AGG | 0.579657 | 4.2:-4667341 | MS.gene048910:CDS |
| AGATAAGCTTAATAAGGCAG+AGG | 0.580725 | 4.2:-4667704 | MS.gene048910:CDS |
| GAAGAGTTCCGTGAAGACAT+TGG | 0.581952 | 4.2:-4667016 | MS.gene048910:CDS |
| GCTAGAGGCAAAGGCAAGAG+AGG | 0.584233 | 4.2:-4666504 | MS.gene048910:CDS |
| GATAAGAGAAGAACATGCAC+AGG | 0.585517 | 4.2:-4667203 | MS.gene048910:CDS |
| TGCTATCATGATCATCTGGA+GGG | 0.586280 | 4.2:-4668285 | MS.gene048910:CDS |
| AGGAGTCTGGAATTGGAGAT+GGG | 0.588723 | 4.2:-4667883 | MS.gene048910:CDS |
| CCTCAAACAAAGCTGCCTGA+TGG | 0.589108 | 4.2:+4666355 | None:intergenic |
| TAGTTGGTACAATGACTGCC+AGG | 0.589912 | 4.2:-4667080 | MS.gene048910:CDS |
| TAACTCCGATTCTCTCTCAT+CGG | 0.589985 | 4.2:+4667738 | None:intergenic |
| AAAGTAATGAAGCTTCAACT+CGG | 0.590029 | 4.2:-4668107 | MS.gene048910:CDS |
| GAACCTGGGAGAGGAAAAGA+GGG | 0.590509 | 4.2:-4666381 | MS.gene048910:CDS |
| AAATCATATCAAAGACTCGA+AGG | 0.595729 | 4.2:-4666295 | MS.gene048910:CDS |
| AGCGAGATGAGTAGGGAACA+GGG | 0.595819 | 4.2:-4666614 | MS.gene048910:CDS |
| CCGCAATACATTCACCTCAT+CGG | 0.598488 | 4.2:+4668083 | None:intergenic |
| GACACAGGAGAAGTTGGAGC+TGG | 0.599447 | 4.2:-4667422 | MS.gene048910:CDS |
| GGTTGTAATATCTACCTGCA+AGG | 0.601672 | 4.2:-4667671 | MS.gene048910:CDS |
| CTGCTATCATGATCATCTGG+AGG | 0.603974 | 4.2:-4668286 | MS.gene048910:CDS |
| AATCATATCAAAGACTCGAA+GGG | 0.608354 | 4.2:-4666294 | MS.gene048910:CDS |
| AATTCAAAGTCTGAAAGAGG+AGG | 0.620184 | 4.2:-4667971 | MS.gene048910:CDS |
| CCTGGAAGAGAAAGGAGATG+AGG | 0.620827 | 4.2:-4666936 | MS.gene048910:CDS |
| AGGGGCACAATTTAGAGTTG+AGG | 0.623036 | 4.2:-4668266 | MS.gene048910:CDS |
| GAGGAGGGTGTGTTGAACCT+GGG | 0.623357 | 4.2:-4666395 | MS.gene048910:CDS |
| TGACTTGGAAGTTCAGCTTG+TGG | 0.632873 | 4.2:-4668028 | MS.gene048910:CDS |
| CATTTGTTGGAGGAGTTGCA+GGG | 0.634017 | 4.2:-4666569 | MS.gene048910:CDS |
| ATCATATCAAAGACTCGAAG+GGG | 0.636434 | 4.2:-4666293 | MS.gene048910:CDS |
| TTTGAGGATTGATTATCACA+GGG | 0.644334 | 4.2:-4666339 | MS.gene048910:CDS |
| AAGACTCGAAGGGGCCAGAG+AGG | 0.650634 | 4.2:-4666284 | MS.gene048910:CDS |
| GCGAGATGAGTAGGGAACAG+GGG | 0.650906 | 4.2:-4666613 | MS.gene048910:CDS |
| GGAAGAGAGCTTTAGAAAGG+CGG | 0.655657 | 4.2:-4666852 | MS.gene048910:CDS |
| GCTATCATGATCATCTGGAG+GGG | 0.656885 | 4.2:-4668284 | MS.gene048910:CDS |
| GCTTTGCCTGTCAAACCAAG+AGG | 0.657188 | 4.2:-4666873 | MS.gene048910:CDS |
| ACATGCACAGGCCCTCACAA+TGG | 0.665629 | 4.2:-4667191 | MS.gene048910:CDS |
| TCACATCGCTAAACTGACAC+AGG | 0.671614 | 4.2:-4667437 | MS.gene048910:CDS |
| CCGATGAGGTGAATGTATTG+CGG | 0.676679 | 4.2:-4668083 | MS.gene048910:CDS |
| TGAGAATGTCATGAATCTTG+AGG | 0.677384 | 4.2:-4666900 | MS.gene048910:CDS |
| CCTGGGAGAGGAAAAGAGGG+AGG | 0.688336 | 4.2:-4666378 | MS.gene048910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAGAAAATTTAACGATG+TGG | - | chr4.2:4666920-4666939 | MS.gene048910:CDS | 20.0% |
| !! | TATAATGAGATGCAAAAATT+AGG | - | chr4.2:4667219-4667238 | MS.gene048910:CDS | 20.0% |
| !!! | TACTATAAGCTCTAAATTTT+CGG | - | chr4.2:4668121-4668140 | MS.gene048910:CDS | 20.0% |
| ! | AAAATTTAACGATGTGGATA+AGG | - | chr4.2:4666926-4666945 | MS.gene048910:CDS | 25.0% |
| ! | AAATTGAAGACAAAGTAAGA+AGG | - | chr4.2:4666440-4666459 | MS.gene048910:CDS | 25.0% |
| ! | AATATAAACACATCGATAGT+TGG | - | chr4.2:4667733-4667752 | MS.gene048910:CDS | 25.0% |
| ! | ACTTTGTCTTCAATTTCTAT+AGG | + | chr4.2:4666436-4666455 | None:intergenic | 25.0% |
| ! | CTTATTAAAGATGACAAACT+TGG | - | chr4.2:4666472-4666491 | MS.gene048910:CDS | 25.0% |
| ! | TTTCCAAGATAAGCTTAATA+AGG | - | chr4.2:4667119-4667138 | MS.gene048910:CDS | 25.0% |
| !! | TTTTTGCATCTCATTATACA+TGG | + | chr4.2:4667217-4667236 | None:intergenic | 25.0% |
| !!! | TCATTTCAAGTTCTGAAATT+TGG | + | chr4.2:4666591-4666610 | None:intergenic | 25.0% |
| AAAGTAATGAAGCTTCAACT+CGG | - | chr4.2:4666722-4666741 | MS.gene048910:CDS | 30.0% | |
| AAATCATATCAAAGACTCGA+AGG | - | chr4.2:4668534-4668553 | MS.gene048910:CDS | 30.0% | |
| AATCATATCAAAGACTCGAA+GGG | - | chr4.2:4668535-4668554 | MS.gene048910:CDS | 30.0% | |
| ACAGCAGAATTGTGATATAA+TGG | - | chr4.2:4666373-4666392 | MS.gene048910:CDS | 30.0% | |
| GACAGATAAAAACCATTTGT+TGG | - | chr4.2:4668247-4668266 | MS.gene048910:CDS | 30.0% | |
| TCAAATTCAAAGTCTGAAAG+AGG | - | chr4.2:4666855-4666874 | MS.gene048910:CDS | 30.0% | |
| TTGATAAAAGAGAAAGAGGA+GGG | - | chr4.2:4668419-4668438 | MS.gene048910:intron | 30.0% | |
| TTTGAGGATTGATTATCACA+GGG | - | chr4.2:4668490-4668509 | MS.gene048910:intron | 30.0% | |
| ! | AGATAAAAACCATTTGTTGG+AGG | - | chr4.2:4668250-4668269 | MS.gene048910:CDS | 30.0% |
| !! | GAAGTTGATAAAAGAGAAAG+AGG | - | chr4.2:4668415-4668434 | MS.gene048910:intron | 30.0% |
| !!! | ACAATTCAGCTAGTTTTTCT+CGG | + | chr4.2:4666510-4666529 | None:intergenic | 30.0% |
| AAGTAATGAAGCTTCAACTC+GGG | - | chr4.2:4666723-4666742 | MS.gene048910:CDS | 35.0% | |
| AATATCCGATGAGAGAGAAT+CGG | - | chr4.2:4667086-4667105 | MS.gene048910:CDS | 35.0% | |
| AATTCAAAGTCTGAAAGAGG+AGG | - | chr4.2:4666858-4666877 | MS.gene048910:CDS | 35.0% | |
| ACATGCTCAGAAAAATGAAC+TGG | - | chr4.2:4666681-4666700 | MS.gene048910:CDS | 35.0% | |
| ACTTCAGGATAAACTTTCCA+AGG | - | chr4.2:4667488-4667507 | MS.gene048910:CDS | 35.0% | |
| AGATAAGCTTAATAAGGCAG+AGG | - | chr4.2:4667125-4667144 | MS.gene048910:CDS | 35.0% | |
| ATATCACAATTCTGCTGTCA+TGG | + | chr4.2:4666371-4666390 | None:intergenic | 35.0% | |
| ATCATATCAAAGACTCGAAG+GGG | - | chr4.2:4668536-4668555 | MS.gene048910:CDS | 35.0% | |
| CGAAGATGAAGAGCAAATAA+AGG | - | chr4.2:4666990-4667009 | MS.gene048910:CDS | 35.0% | |
| GAAAAAGGTTGAAAAGCTAG+AGG | - | chr4.2:4668310-4668329 | MS.gene048910:CDS | 35.0% | |
| GATAAAGAAAAGCAGCTTCA+GGG | - | chr4.2:4666301-4666320 | MS.gene048910:CDS | 35.0% | |
| GCAGAAAACAAAAGAAGAGT+TGG | - | chr4.2:4667587-4667606 | MS.gene048910:CDS | 35.0% | |
| GTGTCAACAGTATGATATCT+GGG | - | chr4.2:4668093-4668112 | MS.gene048910:CDS | 35.0% | |
| GTTTGAGGATTGATTATCAC+AGG | - | chr4.2:4668489-4668508 | MS.gene048910:intron | 35.0% | |
| TAGTTCCTCTTCTCTTTCTT+TGG | + | chr4.2:4666617-4666636 | None:intergenic | 35.0% | |
| TGAATTAGCCAACAAAAACC+TGG | - | chr4.2:4667677-4667696 | MS.gene048910:CDS | 35.0% | |
| TGAGAATGTCATGAATCTTG+AGG | - | chr4.2:4667929-4667948 | MS.gene048910:CDS | 35.0% | |
| TGATAAAGAAAAGCAGCTTC+AGG | - | chr4.2:4666300-4666319 | MS.gene048910:CDS | 35.0% | |
| TGTGTCAACAGTATGATATC+TGG | - | chr4.2:4668092-4668111 | MS.gene048910:CDS | 35.0% | |
| TTCATTGTCAACCATTGTGA+GGG | + | chr4.2:4667652-4667671 | None:intergenic | 35.0% | |
| TTTCATTGTCAACCATTGTG+AGG | + | chr4.2:4667653-4667672 | None:intergenic | 35.0% | |
| ! | CTGCCTTATTAAGCTTATCT+TGG | + | chr4.2:4667125-4667144 | None:intergenic | 35.0% |
| ! | CTTTTGAACCAATGTCTTCA+CGG | + | chr4.2:4667824-4667843 | None:intergenic | 35.0% |
| ! | CTTTTGCAGATTGTCAACTT+GGG | + | chr4.2:4667553-4667572 | None:intergenic | 35.0% |
| ! | GTTGATAAAAGAGAAAGAGG+AGG | - | chr4.2:4668418-4668437 | MS.gene048910:intron | 35.0% |
| ! | TCGTACACTCAGAATTTTCT+CGG | + | chr4.2:4666834-4666853 | None:intergenic | 35.0% |
| !! | AATCTTAATTTGCTCCTTGC+AGG | + | chr4.2:4667175-4667194 | None:intergenic | 35.0% |
| !! | CATTGGTTCAAAAGATCAGA+TGG | - | chr4.2:4667830-4667849 | MS.gene048910:CDS | 35.0% |
| !!! | CAATTCAGCTAGTTTTTCTC+GGG | + | chr4.2:4666509-4666528 | None:intergenic | 35.0% |
| !!! | CTCTTCTTTTGTTTTCTGCA+AGG | + | chr4.2:4667586-4667605 | None:intergenic | 35.0% |
| !!! | TGAAGCTGCTTTTCTTTATC+AGG | + | chr4.2:4666301-4666320 | None:intergenic | 35.0% |
| AAAAGAGACCTGGAAGAGAA+AGG | - | chr4.2:4667885-4667904 | MS.gene048910:CDS | 40.0% | |
| AAACATCTCATACGAGCTTC+AGG | - | chr4.2:4668175-4668194 | MS.gene048910:CDS | 40.0% | |
| ACAACACCAGAAATCTGACT+TGG | - | chr4.2:4666786-4666805 | MS.gene048910:CDS | 40.0% | |
| AGGATCAACTCTGCAGAAAA+AGG | - | chr4.2:4668295-4668314 | MS.gene048910:CDS | 40.0% | |
| AGTGTTCAACTCACAGTCTT+TGG | + | chr4.2:4667322-4667341 | None:intergenic | 40.0% | |
| ATGACTAATCGCTTGGATGT+TGG | + | chr4.2:4667016-4667035 | None:intergenic | 40.0% | |
| CATCTGCTATCATGATCATC+TGG | - | chr4.2:4666540-4666559 | MS.gene048910:CDS | 40.0% | |
| CCAACAAAAACCTGGATCTT+CGG | - | chr4.2:4667685-4667704 | MS.gene048910:CDS | 40.0% | |
| CGAAAAGCTGAAATTGGAGA+TGG | - | chr4.2:4667251-4667270 | MS.gene048910:CDS | 40.0% | |
| GAACTTCCAAGTCAGATTTC+TGG | + | chr4.2:4666795-4666814 | None:intergenic | 40.0% | |
| GAAGTCCAAAGAAAGAGAAG+AGG | - | chr4.2:4666609-4666628 | MS.gene048910:CDS | 40.0% | |
| GATAAGAGAAGAACATGCAC+AGG | - | chr4.2:4667626-4667645 | MS.gene048910:CDS | 40.0% | |
| GGTGCATAGTGTAATTGTGT+GGG | + | chr4.2:4666350-4666369 | None:intergenic | 40.0% | |
| GGTTGTAATATCTACCTGCA+AGG | - | chr4.2:4667158-4667177 | MS.gene048910:CDS | 40.0% | |
| GTCGATCGAAAAGCTGAAAT+TGG | - | chr4.2:4667245-4667264 | MS.gene048910:CDS | 40.0% | |
| TAAACTGACACAGGAGAAGT+TGG | - | chr4.2:4667401-4667420 | MS.gene048910:CDS | 40.0% | |
| TAACTCCGATTCTCTCTCAT+CGG | + | chr4.2:4667094-4667113 | None:intergenic | 40.0% | |
| TAAGGCAGAGGAAGAATGTT+TGG | - | chr4.2:4667137-4667156 | MS.gene048910:CDS | 40.0% | |
| TGCTATCATGATCATCTGGA+GGG | - | chr4.2:4666544-4666563 | MS.gene048910:CDS | 40.0% | |
| TGGTGCATAGTGTAATTGTG+TGG | + | chr4.2:4666351-4666370 | None:intergenic | 40.0% | |
| TTGCAGGGTAAAAAGGAAGA+AGG | - | chr4.2:4668275-4668294 | MS.gene048910:CDS | 40.0% | |
| ! | ATTTGAGTTCTCTGCACTTC+AGG | - | chr4.2:4667473-4667492 | MS.gene048910:CDS | 40.0% |
| ! | CCAAGTTGACAATCTGCAAA+AGG | - | chr4.2:4667551-4667570 | MS.gene048910:CDS | 40.0% |
| ! | CCTTTTGCAGATTGTCAACT+TGG | + | chr4.2:4667554-4667573 | None:intergenic | 40.0% |
| ! | TTCGGAGAATAGTGGAAGAA+CGG | - | chr4.2:4667703-4667722 | MS.gene048910:CDS | 40.0% |
| !! | AGAGGAAGAGAGCTTTAGAA+AGG | - | chr4.2:4667974-4667993 | MS.gene048910:CDS | 40.0% |
| !! | CGTATGAGATGTTTGAGTTG+CGG | + | chr4.2:4668169-4668188 | None:intergenic | 40.0% |
| !! | TTCTAAAGCTCTCTTCCTCT+TGG | + | chr4.2:4667974-4667993 | None:intergenic | 40.0% |
| !!! | CTCTTTTCAGGTCTTCAACT+TGG | + | chr4.2:4667872-4667891 | None:intergenic | 40.0% |
| AACGATGTGGATAAGGAGTC+TGG | - | chr4.2:4666933-4666952 | MS.gene048910:CDS | 45.0% | |
| AATCTGTCAGCGAGATGAGT+AGG | - | chr4.2:4668207-4668226 | MS.gene048910:CDS | 45.0% | |
| AGATCAGATGGCAGCTGATT+TGG | - | chr4.2:4667842-4667861 | MS.gene048910:CDS | 45.0% | |
| ATCTGTCAGCGAGATGAGTA+GGG | - | chr4.2:4668208-4668227 | MS.gene048910:CDS | 45.0% | |
| ATTGTCAACTTGGGCTGTGA+AGG | + | chr4.2:4667544-4667563 | None:intergenic | 45.0% | |
| CATAAGTCTCTCTTGCTCCA+TGG | + | chr4.2:4666896-4666915 | None:intergenic | 45.0% | |
| CATGGAGCAAGAGAGACTTA+TGG | - | chr4.2:4666894-4666913 | MS.gene048910:CDS | 45.0% | |
| CCGATGAGGTGAATGTATTG+CGG | - | chr4.2:4666746-4666765 | MS.gene048910:CDS | 45.0% | |
| CCGCAATACATTCACCTCAT+CGG | + | chr4.2:4666749-4666768 | None:intergenic | 45.0% | |
| CTGCTATCATGATCATCTGG+AGG | - | chr4.2:4666543-4666562 | MS.gene048910:CDS | 45.0% | |
| GAAGAGTTCCGTGAAGACAT+TGG | - | chr4.2:4667813-4667832 | MS.gene048910:CDS | 45.0% | |
| GATGACAAACTTGGCGAAGA+TGG | - | chr4.2:4666481-4666500 | MS.gene048910:CDS | 45.0% | |
| GCTATCATGATCATCTGGAG+GGG | - | chr4.2:4666545-4666564 | MS.gene048910:CDS | 45.0% | |
| GGAGCGCAATGACTATCTAA+AGG | - | chr4.2:4668511-4668530 | MS.gene048910:intron | 45.0% | |
| GGAGGTTGAGAGAAAAACCA+TGG | - | chr4.2:4666876-4666895 | MS.gene048910:CDS | 45.0% | |
| GGATAAACTTTCCAAGGCAG+AGG | - | chr4.2:4667494-4667513 | MS.gene048910:CDS | 45.0% | |
| GGTTGAAAAGCTAGAGGCAA+AGG | - | chr4.2:4668316-4668335 | MS.gene048910:CDS | 45.0% | |
| GTGTCAGATGACTAATCGCT+TGG | + | chr4.2:4667023-4667042 | None:intergenic | 45.0% | |
| GTTCTTCAGCTACACTCTTC+TGG | + | chr4.2:4667290-4667309 | None:intergenic | 45.0% | |
| TCACATCGCTAAACTGACAC+AGG | - | chr4.2:4667392-4667411 | MS.gene048910:CDS | 45.0% | |
| TCATCTGACACAGCAGAAGT+TGG | - | chr4.2:4667032-4667051 | MS.gene048910:CDS | 45.0% | |
| TGAAGACCTGAAAAGAGACC+TGG | - | chr4.2:4667875-4667894 | MS.gene048910:CDS | 45.0% | |
| ! | AAGGAGTCTGGAATTGGAGA+TGG | - | chr4.2:4666945-4666964 | MS.gene048910:CDS | 45.0% |
| ! | AGGAGTCTGGAATTGGAGAT+GGG | - | chr4.2:4666946-4666965 | MS.gene048910:CDS | 45.0% |
| ! | AGGGGCACAATTTAGAGTTG+AGG | - | chr4.2:4666563-4666582 | MS.gene048910:CDS | 45.0% |
| ! | CATTTGTTGGAGGAGTTGCA+GGG | - | chr4.2:4668260-4668279 | MS.gene048910:CDS | 45.0% |
| ! | CCGAAGATCCAGGTTTTTGT+TGG | + | chr4.2:4667688-4667707 | None:intergenic | 45.0% |
| ! | CTGCACGTTTAAGTTTGACC+TGG | + | chr4.2:4667770-4667789 | None:intergenic | 45.0% |
| ! | GGGGCACAATTTAGAGTTGA+GGG | - | chr4.2:4666564-4666583 | MS.gene048910:CDS | 45.0% |
| ! | GTGGATAAGGAGTCTGGAAT+TGG | - | chr4.2:4666939-4666958 | MS.gene048910:CDS | 45.0% |
| ! | TAGTTGGTACAATGACTGCC+AGG | - | chr4.2:4667749-4667768 | MS.gene048910:CDS | 45.0% |
| ! | TCGGAGAATAGTGGAAGAAC+GGG | - | chr4.2:4667704-4667723 | MS.gene048910:CDS | 45.0% |
| ! | TCTCTTCCAGGTCTCTTTTC+AGG | + | chr4.2:4667884-4667903 | None:intergenic | 45.0% |
| ! | TCTCTTCCTCTTGGTTTGAC+AGG | + | chr4.2:4667965-4667984 | None:intergenic | 45.0% |
| ! | TGACTTGGAAGTTCAGCTTG+TGG | - | chr4.2:4666801-4666820 | MS.gene048910:CDS | 45.0% |
| !! | GGAAGAGAGCTTTAGAAAGG+CGG | - | chr4.2:4667977-4667996 | MS.gene048910:CDS | 45.0% |
| !! | TTCAGAGAGCACTTGAAGAC+AGG | - | chr4.2:4668018-4668037 | MS.gene048910:CDS | 45.0% |
| AAGGCAGAGGAAGAGTCTTC+AGG | - | chr4.2:4667507-4667526 | MS.gene048910:CDS | 50.0% | |
| AGCGAGATGAGTAGGGAACA+GGG | - | chr4.2:4668215-4668234 | MS.gene048910:CDS | 50.0% | |
| CAGCTTCAGGGAGCTAAAAC+AGG | - | chr4.2:4666313-4666332 | MS.gene048910:CDS | 50.0% | |
| CCACTATTCTCCGAAGATCC+AGG | + | chr4.2:4667698-4667717 | None:intergenic | 50.0% | |
| CCTCAAACAAAGCTGCCTGA+TGG | + | chr4.2:4668477-4668496 | None:intergenic | 50.0% | |
| CCTCATCTCCTTTCTCTTCC+AGG | + | chr4.2:4667896-4667915 | None:intergenic | 50.0% | |
| CCTGCAACTCCTCCAACAAA+TGG | + | chr4.2:4668262-4668281 | None:intergenic | 50.0% | |
| CCTGGAAGAGAAAGGAGATG+AGG | - | chr4.2:4667893-4667912 | MS.gene048910:CDS | 50.0% | |
| CCTGGATCTTCGGAGAATAG+TGG | - | chr4.2:4667695-4667714 | MS.gene048910:CDS | 50.0% | |
| GAACCTGGGAGAGGAAAAGA+GGG | - | chr4.2:4668448-4668467 | MS.gene048910:intron | 50.0% | |
| GAATGTATTGCGGCAGGAAG+TGG | - | chr4.2:4666756-4666775 | MS.gene048910:CDS | 50.0% | |
| GCTTTGCCTGTCAAACCAAG+AGG | - | chr4.2:4667956-4667975 | MS.gene048910:CDS | 50.0% | |
| GGAGGAGTTGCAGGGTAAAA+AGG | - | chr4.2:4668268-4668287 | MS.gene048910:CDS | 50.0% | |
| TGAACCTGGGAGAGGAAAAG+AGG | - | chr4.2:4668447-4668466 | MS.gene048910:intron | 50.0% | |
| TGAAGACTCTTCCTCTGCCT+TGG | + | chr4.2:4667508-4667527 | None:intergenic | 50.0% | |
| TGAGGTGAATGTATTGCGGC+AGG | - | chr4.2:4666750-4666769 | MS.gene048910:CDS | 50.0% | |
| ! | CCATTTGTTGGAGGAGTTGC+AGG | - | chr4.2:4668259-4668278 | MS.gene048910:CDS | 50.0% |
| !! | CCATCAGGCAGCTTTGTTTG+AGG | - | chr4.2:4668474-4668493 | MS.gene048910:intron | 50.0% |
| ACATGCACAGGCCCTCACAA+TGG | - | chr4.2:4667638-4667657 | MS.gene048910:CDS | 55.0% | |
| AGGAAAAGAGGGAGGCCATC+AGG | - | chr4.2:4668459-4668478 | MS.gene048910:intron | 55.0% | |
| CAGCGAGATGAGTAGGGAAC+AGG | - | chr4.2:4668214-4668233 | MS.gene048910:CDS | 55.0% | |
| GACACAGGAGAAGTTGGAGC+TGG | - | chr4.2:4667407-4667426 | MS.gene048910:CDS | 55.0% | |
| GCGAGATGAGTAGGGAACAG+GGG | - | chr4.2:4668216-4668235 | MS.gene048910:CDS | 55.0% | |
| GCTAGAGGCAAAGGCAAGAG+AGG | - | chr4.2:4668325-4668344 | MS.gene048910:CDS | 55.0% | |
| ! | AGAGGAGGGTGTGTTGAACC+TGG | - | chr4.2:4668433-4668452 | MS.gene048910:intron | 55.0% |
| ! | GAGGAGGGTGTGTTGAACCT+GGG | - | chr4.2:4668434-4668453 | MS.gene048910:intron | 55.0% |
| AAGACTCGAAGGGGCCAGAG+AGG | - | chr4.2:4668545-4668564 | MS.gene048910:CDS | 60.0% | |
| AGCTTCAACTCGGGCCGATG+AGG | - | chr4.2:4666732-4666751 | MS.gene048910:CDS | 60.0% | |
| CCTGGGAGAGGAAAAGAGGG+AGG | - | chr4.2:4668451-4668470 | MS.gene048910:intron | 60.0% | |
| GGGTGTGTTGAACCTGGGAG+AGG | - | chr4.2:4668439-4668458 | MS.gene048910:intron | 60.0% | |
| ! | CCTCCCTCTTTTCCTCTCCC+AGG | + | chr4.2:4668454-4668473 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 4666277 | 4668574 | 4666277 | ID=MS.gene048910 |
| chr4.2 | mRNA | 4666277 | 4668574 | 4666277 | ID=MS.gene048910.t1;Parent=MS.gene048910 |
| chr4.2 | exon | 4668517 | 4668574 | 4668517 | ID=MS.gene048910.t1.exon1;Parent=MS.gene048910.t1 |
| chr4.2 | CDS | 4668517 | 4668574 | 4668517 | ID=cds.MS.gene048910.t1;Parent=MS.gene048910.t1 |
| chr4.2 | exon | 4666277 | 4668411 | 4666277 | ID=MS.gene048910.t1.exon2;Parent=MS.gene048910.t1 |
| chr4.2 | CDS | 4666277 | 4668411 | 4666277 | ID=cds.MS.gene048910.t1;Parent=MS.gene048910.t1 |
| Gene Sequence |
| Protein sequence |
