Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04894.t1 | XP_013460652.1 | 95 | 218 | 7 | 2 | 1 | 217 | 1 | 215 | 5.20E-107 | 397.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04894.t1 | Q6NLC8 | 47.9 | 217 | 94 | 6 | 1 | 206 | 1 | 209 | 3.8e-42 | 172.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04894.t1 | A0A072UZ14 | 95.0 | 218 | 7 | 2 | 1 | 217 | 1 | 215 | 3.7e-107 | 397.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene83133 | MS.gene04894 | PPI |
| MS.gene006970 | MS.gene04894 | PPI |
| MS.gene62991 | MS.gene04894 | PPI |
| MS.gene026608 | MS.gene04894 | PPI |
| MS.gene59144 | MS.gene04894 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04894.t1 | MTR_3g067730 | 94.091 | 220 | 9 | 2 | 1 | 219 | 1 | 217 | 6.19e-150 | 416 |
| MS.gene04894.t1 | MTR_5g079610 | 60.987 | 223 | 68 | 6 | 1 | 218 | 1 | 209 | 2.96e-81 | 241 |
| MS.gene04894.t1 | MTR_1g030740 | 46.222 | 225 | 101 | 5 | 1 | 219 | 1 | 211 | 7.40e-56 | 177 |
| MS.gene04894.t1 | MTR_4g085100 | 44.643 | 224 | 105 | 8 | 1 | 219 | 1 | 210 | 5.47e-50 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04894.t1 | AT5G37840 | 48.815 | 211 | 95 | 7 | 1 | 206 | 1 | 203 | 1.92e-56 | 179 |
| MS.gene04894.t1 | AT1G66480 | 53.039 | 181 | 69 | 6 | 1 | 171 | 1 | 175 | 2.59e-54 | 173 |
| MS.gene04894.t1 | AT2G01340 | 50.568 | 176 | 72 | 7 | 1 | 174 | 1 | 163 | 2.24e-47 | 155 |
| MS.gene04894.t1 | AT1G71015 | 47.953 | 171 | 79 | 5 | 1 | 171 | 1 | 161 | 1.09e-39 | 135 |
| MS.gene04894.t1 | AT1G71015 | 47.953 | 171 | 79 | 5 | 1 | 171 | 1 | 161 | 1.09e-39 | 135 |
Find 68 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCCCGGTCATGCTCTTT+TGG | 0.180720 | 3.4:-68437774 | MS.gene04894:CDS |
| GAAGATTGTAAGTTTGTATA+TGG | 0.218805 | 3.4:-68437390 | MS.gene04894:CDS |
| GGCCAAGAAAATCTATTTCT+TGG | 0.236205 | 3.4:-68437687 | MS.gene04894:CDS |
| TCACAAGCAGTGAAGCATTT+TGG | 0.240768 | 3.4:-68437749 | MS.gene04894:CDS |
| AATGGTTGAGATTGAACTTT+TGG | 0.273954 | 3.4:+68437656 | None:intergenic |
| AGTTTGTATATGGGGAATAA+TGG | 0.285165 | 3.4:-68437380 | MS.gene04894:CDS |
| GGGCCCATCATCACCTATAT+TGG | 0.340286 | 3.4:+68437514 | None:intergenic |
| GTTTGTATATGGGGAATAAT+GGG | 0.375975 | 3.4:-68437379 | MS.gene04894:CDS |
| GCAAAGGTAATGAAAATAGA+TGG | 0.392442 | 3.4:-68437848 | MS.gene04894:CDS |
| GTTATCGAAACGTTCCGTTT+CGG | 0.396966 | 3.4:-68437558 | MS.gene04894:CDS |
| ACTACGTCATTTGCTTTAGC+TGG | 0.402674 | 3.4:+68437803 | None:intergenic |
| TGAATTTCTCCTTCTTCCAC+TGG | 0.404762 | 3.4:+68435128 | None:intergenic |
| AAGATTGTAAGTTTGTATAT+GGG | 0.412790 | 3.4:-68437389 | MS.gene04894:CDS |
| TTCCGTTTCGGATCTTCCTT+CGG | 0.426951 | 3.4:-68437546 | MS.gene04894:CDS |
| TGACCCATCACGAATTAAAC+CGG | 0.445887 | 3.4:+68437493 | None:intergenic |
| GGCTCAGTTGGATAGGTTGA+TGG | 0.448296 | 3.4:-68437444 | MS.gene04894:CDS |
| TCGCGATGGAGCCGAGGTGG+CGG | 0.453581 | 3.4:-68437414 | MS.gene04894:CDS |
| CGATCCAATATAGGTGATGA+TGG | 0.454916 | 3.4:-68437518 | MS.gene04894:CDS |
| CCACTGGATCGCACCCTCTT+CGG | 0.473786 | 3.4:+68437632 | None:intergenic |
| AACCTATCCAACTGAGCCTT+AGG | 0.477024 | 3.4:+68437449 | None:intergenic |
| AGAGATGGGAAACGTTATGA+TGG | 0.479796 | 3.4:-68437885 | None:intergenic |
| TGAATCCAAAAGAGCATGAC+CGG | 0.484308 | 3.4:+68437769 | None:intergenic |
| AGTTTCAGTCCAGTGGAAGA+AGG | 0.490701 | 3.4:-68435137 | MS.gene04894:CDS |
| GAGGATTCCTAAGGCTCAGT+TGG | 0.502372 | 3.4:-68437456 | MS.gene04894:CDS |
| ACGTGAAGGGTGTAATCCAC+TGG | 0.505273 | 3.4:+68437616 | None:intergenic |
| GATCGCACCCTCTTCGGCAA+TGG | 0.515740 | 3.4:+68437638 | None:intergenic |
| TGAACCTCACCAACAACTAA+AGG | 0.523764 | 3.4:-68437708 | MS.gene04894:CDS |
| TAATTCGTGATGGGTCAACT+CGG | 0.530636 | 3.4:-68437487 | MS.gene04894:CDS |
| AAATAGAGGTTCACAATCAA+AGG | 0.532449 | 3.4:-68437313 | MS.gene04894:CDS |
| GGCCCGGTTTAATTCGTGAT+GGG | 0.533844 | 3.4:-68437496 | MS.gene04894:CDS |
| ATCTCAACCATTGCCGAAGA+GGG | 0.536330 | 3.4:-68437645 | MS.gene04894:CDS |
| TCGGTGAAGCGATCCAATAT+AGG | 0.537324 | 3.4:-68437527 | MS.gene04894:CDS |
| GCTTCTGTGAAGGGTGGTGG+TGG | 0.538063 | 3.4:-68437350 | MS.gene04894:CDS |
| GGGAATAATGCTTCTGTGAA+GGG | 0.540774 | 3.4:-68437359 | MS.gene04894:CDS |
| AATATAGGTGATGATGGGCC+CGG | 0.541049 | 3.4:-68437512 | MS.gene04894:CDS |
| GGGCCCGGTTTAATTCGTGA+TGG | 0.543179 | 3.4:-68437497 | MS.gene04894:CDS |
| TTGGCCTTTAGTTGTTGGTG+AGG | 0.543375 | 3.4:+68437704 | None:intergenic |
| AATGCTTCTGTGAAGGGTGG+TGG | 0.549716 | 3.4:-68437353 | MS.gene04894:CDS |
| TTCCTAAGGCTCAGTTGGAT+AGG | 0.549884 | 3.4:-68437451 | MS.gene04894:CDS |
| GGTCAACTCGGGTGAAAATG+AGG | 0.551532 | 3.4:-68437475 | MS.gene04894:CDS |
| CCGAAGAGGGTGCGATCCAG+TGG | 0.555597 | 3.4:-68437632 | MS.gene04894:CDS |
| AGTTGTTGGTGAGGTTCAAG+TGG | 0.562454 | 3.4:+68437713 | None:intergenic |
| AATTCGTGATGGGTCAACTC+GGG | 0.562866 | 3.4:-68437486 | MS.gene04894:CDS |
| CACCGAAGGAAGATCCGAAA+CGG | 0.564039 | 3.4:+68437544 | None:intergenic |
| AATAAATGAAGGCAAAATAG+AGG | 0.565866 | 3.4:-68437327 | MS.gene04894:CDS |
| TAGCGTTCATGCCACGTGAA+GGG | 0.567892 | 3.4:+68437603 | None:intergenic |
| GGTGAAAATGAGGATTCCTA+AGG | 0.569823 | 3.4:-68437465 | MS.gene04894:CDS |
| AGATTGTAAGTTTGTATATG+GGG | 0.573949 | 3.4:-68437388 | MS.gene04894:CDS |
| GAGATGGGAAACGTTATGAT+GGG | 0.574353 | 3.4:-68437884 | MS.gene04894:CDS |
| ACGTGTTAGTTTCAGTCCAG+TGG | 0.576212 | 3.4:-68435144 | MS.gene04894:CDS |
| GGTGGTGGTGGAATAAATGA+AGG | 0.580631 | 3.4:-68437338 | MS.gene04894:CDS |
| GTAGCGTTCATGCCACGTGA+AGG | 0.586669 | 3.4:+68437602 | None:intergenic |
| GGAGAGTCGCGATGGAGCCG+AGG | 0.592155 | 3.4:-68437420 | MS.gene04894:CDS |
| TGGGAATAATGCTTCTGTGA+AGG | 0.606264 | 3.4:-68437360 | MS.gene04894:CDS |
| TTGATGGAGGAGAGTCGCGA+TGG | 0.607880 | 3.4:-68437428 | MS.gene04894:CDS |
| AATCTCAACCATTGCCGAAG+AGG | 0.610208 | 3.4:-68437646 | MS.gene04894:CDS |
| GATCCAATATAGGTGATGAT+GGG | 0.621522 | 3.4:-68437517 | MS.gene04894:CDS |
| TACAATCTTCTCCGCCACCT+CGG | 0.636314 | 3.4:+68437403 | None:intergenic |
| ATATTGGATCGCTTCACCGA+AGG | 0.641719 | 3.4:+68437530 | None:intergenic |
| TCACAATCAAAGGTCACGAA+GGG | 0.650446 | 3.4:-68437303 | MS.gene04894:intron |
| GACCCATCACGAATTAAACC+GGG | 0.651488 | 3.4:+68437494 | None:intergenic |
| GAGTCGCGATGGAGCCGAGG+TGG | 0.651574 | 3.4:-68437417 | MS.gene04894:CDS |
| TTCACAATCAAAGGTCACGA+AGG | 0.658645 | 3.4:-68437304 | MS.gene04894:CDS |
| TCAGTTGGATAGGTTGATGG+AGG | 0.664629 | 3.4:-68437441 | MS.gene04894:CDS |
| GAATCCAAAAGAGCATGACC+GGG | 0.671253 | 3.4:+68437770 | None:intergenic |
| AATAATGCTTCTGTGAAGGG+TGG | 0.672066 | 3.4:-68437356 | MS.gene04894:CDS |
| GTGGCATGAACGCTACTGAG+AGG | 0.701603 | 3.4:-68437595 | MS.gene04894:CDS |
| AGTGGATTACACCCTTCACG+TGG | 0.716983 | 3.4:-68437614 | MS.gene04894:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATGTTCTTAATAATAT+AGG | - | chr3.4:68436897-68436916 | MS.gene04894:intron | 10.0% |
| !!! | GCAAATATTATTTTAATAAA+AGG | + | chr3.4:68436128-68436147 | None:intergenic | 10.0% |
| !!! | TGATATACTTTTTTTTTTTT+TGG | + | chr3.4:68437705-68437724 | None:intergenic | 10.0% |
| !!! | TTAACCTTTTTTTTTTTTTA+TGG | - | chr3.4:68437354-68437373 | MS.gene04894:CDS | 10.0% |
| !!! | TTATTTTAATAAAAGGTATT+TGG | + | chr3.4:68436121-68436140 | None:intergenic | 10.0% |
| !! | AAAAAAATAGGAAAATTCTA+TGG | - | chr3.4:68436242-68436261 | MS.gene04894:intron | 15.0% |
| !! | AAAAAATTTGTAAGTATTCT+AGG | + | chr3.4:68436065-68436084 | None:intergenic | 15.0% |
| !! | AGTGTTTATTAAAAAATAAG+AGG | - | chr3.4:68436172-68436191 | MS.gene04894:intron | 15.0% |
| !! | ATTGTAATCTTAGTTAATAA+CGG | + | chr3.4:68437566-68437585 | None:intergenic | 15.0% |
| !! | CAAGAATAACAAAAAAAAAT+AGG | - | chr3.4:68436230-68436249 | MS.gene04894:intron | 15.0% |
| !! | GTATCCATAAAAAAAAAAAA+AGG | + | chr3.4:68437361-68437380 | None:intergenic | 15.0% |
| !!! | AAATTTTGGTCATTAATATT+TGG | + | chr3.4:68436809-68436828 | None:intergenic | 15.0% |
| !!! | AATATTAATGACCAAAATTT+TGG | - | chr3.4:68436809-68436828 | MS.gene04894:intron | 15.0% |
| !!! | ATACTTACAAATTTTTTTTG+AGG | - | chr3.4:68436068-68436087 | MS.gene04894:intron | 15.0% |
| !!! | CTTATTTTTTAATAAACACT+CGG | + | chr3.4:68436172-68436191 | None:intergenic | 15.0% |
| !!! | TACTTACAAATTTTTTTTGA+GGG | - | chr3.4:68436069-68436088 | MS.gene04894:intron | 15.0% |
| !!! | TTTGATTCATTTTTTTTGAA+AGG | + | chr3.4:68436620-68436639 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTAGTGCAAAA+TGG | + | chr3.4:68435883-68435902 | None:intergenic | 15.0% |
| !! | AAGATTGTAAGTTTGTATAT+GGG | - | chr3.4:68435601-68435620 | MS.gene04894:intron | 20.0% |
| !! | TAATAATACTTACAACATCT+TGG | + | chr3.4:68436540-68436559 | None:intergenic | 20.0% |
| !! | TTTATATATTCATTTAGCCA+TGG | + | chr3.4:68437645-68437664 | None:intergenic | 20.0% |
| !!! | AAAAATGGTTACCAAAATTT+TGG | + | chr3.4:68436823-68436842 | None:intergenic | 20.0% |
| !!! | AAAACAAATATTTTCTGTCT+TGG | - | chr3.4:68437029-68437048 | MS.gene04894:intron | 20.0% |
| !!! | ACAAGAAAAGTATATATCAT+AGG | - | chr3.4:68437676-68437695 | MS.gene04894:CDS | 20.0% |
| !!! | TATATTTTCCTCTAAGAAAA+CGG | + | chr3.4:68437541-68437560 | None:intergenic | 20.0% |
| !!! | TTTACAAGTACTTTTCAATA+AGG | + | chr3.4:68437390-68437409 | None:intergenic | 20.0% |
| ! | AAAAGAAACTTATCATGTCA+TGG | + | chr3.4:68436704-68436723 | None:intergenic | 25.0% |
| ! | AAAGAAACTTATCATGTCAT+GGG | + | chr3.4:68436703-68436722 | None:intergenic | 25.0% |
| ! | AATAAATGAAGGCAAAATAG+AGG | - | chr3.4:68435663-68435682 | MS.gene04894:intron | 25.0% |
| ! | AGATTGTAAGTTTGTATATG+GGG | - | chr3.4:68435602-68435621 | MS.gene04894:intron | 25.0% |
| ! | GAAGATTGTAAGTTTGTATA+TGG | - | chr3.4:68435600-68435619 | MS.gene04894:intron | 25.0% |
| ! | TATCTTTCAATATCATCTTG+TGG | + | chr3.4:68436736-68436755 | None:intergenic | 25.0% |
| ! | TTAAAAAATAAGAGGACACA+CGG | - | chr3.4:68436180-68436199 | MS.gene04894:intron | 25.0% |
| ! | TTATGTATGAGGTAACAATA+CGG | + | chr3.4:68437281-68437300 | None:intergenic | 25.0% |
| ! | TTGCTTGAAACTACAAATAT+AGG | + | chr3.4:68437751-68437770 | None:intergenic | 25.0% |
| !! | AACCAAGAAATAGATTTTCT+TGG | + | chr3.4:68435308-68435327 | None:intergenic | 25.0% |
| !! | TTATGAAAGAAAGTGTAACT+GGG | - | chr3.4:68436867-68436886 | MS.gene04894:intron | 25.0% |
| !! | TTTCAAAAAAGTCAGTTTTC+TGG | - | chr3.4:68436661-68436680 | MS.gene04894:intron | 25.0% |
| !!! | AGTCATAAGAATGACTTTTT+TGG | - | chr3.4:68436268-68436287 | MS.gene04894:intron | 25.0% |
| !!! | TAAATTTGTTTTTGTAGCCA+TGG | - | chr3.4:68437625-68437644 | MS.gene04894:CDS | 25.0% |
| !!! | TTTCATTACCTTTGCTTTTT+TGG | + | chr3.4:68435137-68435156 | None:intergenic | 25.0% |
| AAATAGAGGTTCACAATCAA+AGG | - | chr3.4:68435677-68435696 | MS.gene04894:intron | 30.0% | |
| AGTTTGTATATGGGGAATAA+TGG | - | chr3.4:68435610-68435629 | MS.gene04894:intron | 30.0% | |
| ATTGAGATACTTCATTGAGT+TGG | - | chr3.4:68436038-68436057 | MS.gene04894:intron | 30.0% | |
| GCAAAGGTAATGAAAATAGA+TGG | - | chr3.4:68435142-68435161 | MS.gene04894:CDS | 30.0% | |
| GTTTCAATTTCTATGCAAAC+AGG | - | chr3.4:68437774-68437793 | MS.gene04894:CDS | 30.0% | |
| GTTTGTATATGGGGAATAAT+GGG | - | chr3.4:68435611-68435630 | MS.gene04894:intron | 30.0% | |
| TAAAAAATAAGAGGACACAC+GGG | - | chr3.4:68436181-68436200 | MS.gene04894:intron | 30.0% | |
| TAGTCGTAATTACTTGAAAG+TGG | + | chr3.4:68437477-68437496 | None:intergenic | 30.0% | |
| TCTTGTTAAGCTATCTAACA+TGG | - | chr3.4:68437240-68437259 | MS.gene04894:intron | 30.0% | |
| TTGACTTCATCTTATGTATG+AGG | + | chr3.4:68437292-68437311 | None:intergenic | 30.0% | |
| TTTAATGAGAGTTTGCAAGT+CGG | - | chr3.4:68435831-68435850 | MS.gene04894:intron | 30.0% | |
| ! | AATACAATCCGTTTTCTTAG+AGG | - | chr3.4:68437530-68437549 | MS.gene04894:CDS | 30.0% |
| ! | AATGGTTGAGATTGAACTTT+TGG | + | chr3.4:68435337-68435356 | None:intergenic | 30.0% |
| ! | CTTATGAAAGAAAGTGTAAC+TGG | - | chr3.4:68436866-68436885 | MS.gene04894:intron | 30.0% |
| ! | GATGAATTGATGATACTATG+AGG | + | chr3.4:68436369-68436388 | None:intergenic | 30.0% |
| ! | TACAGGTACTATTTTATCGT+TGG | + | chr3.4:68436514-68436533 | None:intergenic | 30.0% |
| AATGAGATATGTACCCGTTT+CGG | - | chr3.4:68435943-68435962 | MS.gene04894:intron | 35.0% | |
| ACACAATACATATCCGAAAC+GGG | + | chr3.4:68435959-68435978 | None:intergenic | 35.0% | |
| ATACACTCAACGAATTACAC+TGG | + | chr3.4:68437176-68437195 | None:intergenic | 35.0% | |
| CACACAATACATATCCGAAA+CGG | + | chr3.4:68435960-68435979 | None:intergenic | 35.0% | |
| GACGTAGTTAAAAACTATCC+CGG | - | chr3.4:68435202-68435221 | MS.gene04894:intron | 35.0% | |
| GATCCAATATAGGTGATGAT+GGG | - | chr3.4:68435473-68435492 | MS.gene04894:intron | 35.0% | |
| GTTTGTACAATGGCATCAAA+AGG | - | chr3.4:68436338-68436357 | MS.gene04894:intron | 35.0% | |
| TATTTCCCCAACTTTCATCT+TGG | + | chr3.4:68436949-68436968 | None:intergenic | 35.0% | |
| TCGTAAGTGTTACACTTTGT+GGG | + | chr3.4:68436449-68436468 | None:intergenic | 35.0% | |
| TGTTACGCTTATAACAAGGT+AGG | + | chr3.4:68436425-68436444 | None:intergenic | 35.0% | |
| TTACAACATCTTGGACTTAC+AGG | + | chr3.4:68436531-68436550 | None:intergenic | 35.0% | |
| ! | GGCCAAGAAAATCTATTTCT+TGG | - | chr3.4:68435303-68435322 | MS.gene04894:intron | 35.0% |
| !! | TTTTCTTGGCCTTTAGTTGT+TGG | + | chr3.4:68435294-68435313 | None:intergenic | 35.0% |
| !!! | AGTGAAGCATTTTGGTCTTA+GGG | - | chr3.4:68435249-68435268 | MS.gene04894:intron | 35.0% |
| AATAATGCTTCTGTGAAGGG+TGG | - | chr3.4:68435634-68435653 | MS.gene04894:intron | 40.0% | |
| ACTACGTCATTTGCTTTAGC+TGG | + | chr3.4:68435190-68435209 | None:intergenic | 40.0% | |
| ACTTGTTTCGATGTTGCAAG+TGG | - | chr3.4:68435795-68435814 | MS.gene04894:intron | 40.0% | |
| ATCTTGGCATCAGCAAGATA+AGG | + | chr3.4:68436933-68436952 | None:intergenic | 40.0% | |
| ATTGCAAGTGTTTAGCTACG+TGG | - | chr3.4:68436979-68436998 | MS.gene04894:intron | 40.0% | |
| CGATCCAATATAGGTGATGA+TGG | - | chr3.4:68435472-68435491 | MS.gene04894:intron | 40.0% | |
| CGGGAAGACGATATTGAAAT+AGG | - | chr3.4:68436200-68436219 | MS.gene04894:intron | 40.0% | |
| CGTAAGTGTTACACTTTGTG+GGG | + | chr3.4:68436448-68436467 | None:intergenic | 40.0% | |
| CTGATGCCAAGATGAAAGTT+GGG | - | chr3.4:68436940-68436959 | MS.gene04894:intron | 40.0% | |
| GACTGAAACTAACACGTTTC+TGG | + | chr3.4:68437843-68437862 | None:intergenic | 40.0% | |
| GGGAAGAACCAAAAAAGCAA+AGG | - | chr3.4:68435126-68435145 | MS.gene04894:CDS | 40.0% | |
| GGGAATAATGCTTCTGTGAA+GGG | - | chr3.4:68435631-68435650 | MS.gene04894:intron | 40.0% | |
| GGTGAAAATGAGGATTCCTA+AGG | - | chr3.4:68435525-68435544 | MS.gene04894:intron | 40.0% | |
| GTCGTAAGTGTTACACTTTG+TGG | + | chr3.4:68436450-68436469 | None:intergenic | 40.0% | |
| GTTATCGAAACGTTCCGTTT+CGG | - | chr3.4:68435432-68435451 | MS.gene04894:intron | 40.0% | |
| TCACAATCAAAGGTCACGAA+GGG | - | chr3.4:68435687-68435706 | MS.gene04894:intron | 40.0% | |
| TGAACCTCACCAACAACTAA+AGG | - | chr3.4:68435282-68435301 | MS.gene04894:intron | 40.0% | |
| TGAATTTCTCCTTCTTCCAC+TGG | + | chr3.4:68437865-68437884 | None:intergenic | 40.0% | |
| TGACCCATCACGAATTAAAC+CGG | + | chr3.4:68435500-68435519 | None:intergenic | 40.0% | |
| TGATGCCAAGATGAAAGTTG+GGG | - | chr3.4:68436941-68436960 | MS.gene04894:intron | 40.0% | |
| TGATGCCATTGTACAAACAG+CGG | + | chr3.4:68436336-68436355 | None:intergenic | 40.0% | |
| TGGGAATAATGCTTCTGTGA+AGG | - | chr3.4:68435630-68435649 | MS.gene04894:intron | 40.0% | |
| TTCACAATCAAAGGTCACGA+AGG | - | chr3.4:68435686-68435705 | MS.gene04894:intron | 40.0% | |
| TTGTTCTTCTGACGTGGTTA+TGG | + | chr3.4:68437125-68437144 | None:intergenic | 40.0% | |
| ! | ATGGCAAGTTGGGTGAATTT+AGG | + | chr3.4:68437106-68437125 | None:intergenic | 40.0% |
| ! | TGAATCCAAAAGAGCATGAC+CGG | + | chr3.4:68435224-68435243 | None:intergenic | 40.0% |
| ! | TGGCAAGTTGGGTGAATTTA+GGG | + | chr3.4:68437105-68437124 | None:intergenic | 40.0% |
| !! | CAGTGAAGCATTTTGGTCTT+AGG | - | chr3.4:68435248-68435267 | MS.gene04894:intron | 40.0% |
| !! | TAATTCGTGATGGGTCAACT+CGG | - | chr3.4:68435503-68435522 | MS.gene04894:intron | 40.0% |
| !! | TCACAAGCAGTGAAGCATTT+TGG | - | chr3.4:68435241-68435260 | MS.gene04894:intron | 40.0% |
| !!! | AGCTGGAGTTTTTAGCTTGA+AGG | + | chr3.4:68435173-68435192 | None:intergenic | 40.0% |
| AACCTATCCAACTGAGCCTT+AGG | + | chr3.4:68435544-68435563 | None:intergenic | 45.0% | |
| AATCTCAACCATTGCCGAAG+AGG | - | chr3.4:68435344-68435363 | MS.gene04894:intron | 45.0% | |
| AGTTTCAGTCCAGTGGAAGA+AGG | - | chr3.4:68437853-68437872 | MS.gene04894:CDS | 45.0% | |
| ATATTGGATCGCTTCACCGA+AGG | + | chr3.4:68435463-68435482 | None:intergenic | 45.0% | |
| ATCTCAACCATTGCCGAAGA+GGG | - | chr3.4:68435345-68435364 | MS.gene04894:intron | 45.0% | |
| ATGCCATTGTACAAACAGCG+GGG | + | chr3.4:68436334-68436353 | None:intergenic | 45.0% | |
| GACCCATCACGAATTAAACC+GGG | + | chr3.4:68435499-68435518 | None:intergenic | 45.0% | |
| GATGCCATTGTACAAACAGC+GGG | + | chr3.4:68436335-68436354 | None:intergenic | 45.0% | |
| GCTGATGCCAAGATGAAAGT+TGG | - | chr3.4:68436939-68436958 | MS.gene04894:intron | 45.0% | |
| TCATGTCATGGGAGCTTCTA+CGG | + | chr3.4:68436692-68436711 | None:intergenic | 45.0% | |
| TCGATGTTGCAAGTGGATGT+TGG | - | chr3.4:68435802-68435821 | MS.gene04894:intron | 45.0% | |
| TCGGTGAAGCGATCCAATAT+AGG | - | chr3.4:68435463-68435482 | MS.gene04894:intron | 45.0% | |
| TGACGTGGTTATGGCAAGTT+GGG | + | chr3.4:68437116-68437135 | None:intergenic | 45.0% | |
| TTCCGTTTCGGATCTTCCTT+CGG | - | chr3.4:68435444-68435463 | MS.gene04894:intron | 45.0% | |
| TTCCTAAGGCTCAGTTGGAT+AGG | - | chr3.4:68435539-68435558 | MS.gene04894:intron | 45.0% | |
| ! | ACGTGTTAGTTTCAGTCCAG+TGG | - | chr3.4:68437846-68437865 | MS.gene04894:CDS | 45.0% |
| ! | AGTTGTTGGTGAGGTTCAAG+TGG | + | chr3.4:68435280-68435299 | None:intergenic | 45.0% |
| ! | GAATCCAAAAGAGCATGACC+GGG | + | chr3.4:68435223-68435242 | None:intergenic | 45.0% |
| ! | GGGGTGTTACGCTTATAACA+AGG | + | chr3.4:68436429-68436448 | None:intergenic | 45.0% |
| ! | TTGGCCTTTAGTTGTTGGTG+AGG | + | chr3.4:68435289-68435308 | None:intergenic | 45.0% |
| !! | AATATAGGTGATGATGGGCC+CGG | - | chr3.4:68435478-68435497 | MS.gene04894:intron | 45.0% |
| !! | AATTCGTGATGGGTCAACTC+GGG | - | chr3.4:68435504-68435523 | MS.gene04894:intron | 45.0% |
| !! | CTCTTGTTGTTCTTCTGACG+TGG | + | chr3.4:68437131-68437150 | None:intergenic | 45.0% |
| !! | GGTGGTGGTGGAATAAATGA+AGG | - | chr3.4:68435652-68435671 | MS.gene04894:intron | 45.0% |
| !! | TCAGTTGGATAGGTTGATGG+AGG | - | chr3.4:68435549-68435568 | MS.gene04894:intron | 45.0% |
| !!! | ACTTTTTTATATATAAAAAA+TGG | + | chr3.4:68436838-68436857 | None:intergenic | 5.0% |
| AATGCTTCTGTGAAGGGTGG+TGG | - | chr3.4:68435637-68435656 | MS.gene04894:intron | 50.0% | |
| ACACCCCGCTGTTTGTACAA+TGG | - | chr3.4:68436328-68436347 | MS.gene04894:intron | 50.0% | |
| CACCGAAGGAAGATCCGAAA+CGG | + | chr3.4:68435449-68435468 | None:intergenic | 50.0% | |
| CTGACGTGGTTATGGCAAGT+TGG | + | chr3.4:68437117-68437136 | None:intergenic | 50.0% | |
| GAGGATTCCTAAGGCTCAGT+TGG | - | chr3.4:68435534-68435553 | MS.gene04894:intron | 50.0% | |
| GAGGTAACAATACGGCGCAA+AGG | + | chr3.4:68437273-68437292 | None:intergenic | 50.0% | |
| GGCCCGGTTTAATTCGTGAT+GGG | - | chr3.4:68435494-68435513 | MS.gene04894:intron | 50.0% | |
| GGGCCCATCATCACCTATAT+TGG | + | chr3.4:68435479-68435498 | None:intergenic | 50.0% | |
| GGTCAACTCGGGTGAAAATG+AGG | - | chr3.4:68435515-68435534 | MS.gene04894:intron | 50.0% | |
| TACAATCTTCTCCGCCACCT+CGG | + | chr3.4:68435590-68435609 | None:intergenic | 50.0% | |
| TAGCGTTCATGCCACGTGAA+GGG | + | chr3.4:68435390-68435409 | None:intergenic | 50.0% | |
| ! | ACGTGAAGGGTGTAATCCAC+TGG | + | chr3.4:68435377-68435396 | None:intergenic | 50.0% |
| ! | CTATCCCGGTCATGCTCTTT+TGG | - | chr3.4:68435216-68435235 | MS.gene04894:intron | 50.0% |
| ! | GGCTCAGTTGGATAGGTTGA+TGG | - | chr3.4:68435546-68435565 | MS.gene04894:intron | 50.0% |
| !! | AGTGGATTACACCCTTCACG+TGG | - | chr3.4:68435376-68435395 | MS.gene04894:intron | 50.0% |
| GGGCCCGGTTTAATTCGTGA+TGG | - | chr3.4:68435493-68435512 | MS.gene04894:intron | 55.0% | |
| GTAGCGTTCATGCCACGTGA+AGG | + | chr3.4:68435391-68435410 | None:intergenic | 55.0% | |
| GTGGCATGAACGCTACTGAG+AGG | - | chr3.4:68435395-68435414 | MS.gene04894:intron | 55.0% | |
| TTGATGGAGGAGAGTCGCGA+TGG | - | chr3.4:68435562-68435581 | MS.gene04894:intron | 55.0% | |
| CCACTGGATCGCACCCTCTT+CGG | + | chr3.4:68435361-68435380 | None:intergenic | 60.0% | |
| GATCGCACCCTCTTCGGCAA+TGG | + | chr3.4:68435355-68435374 | None:intergenic | 60.0% | |
| ! | GCTTCTGTGAAGGGTGGTGG+TGG | - | chr3.4:68435640-68435659 | MS.gene04894:intron | 60.0% |
| ! | CCGAAGAGGGTGCGATCCAG+TGG | - | chr3.4:68435358-68435377 | MS.gene04894:intron | 65.0% |
| GAGTCGCGATGGAGCCGAGG+TGG | - | chr3.4:68435573-68435592 | MS.gene04894:intron | 70.0% | |
| GGAGAGTCGCGATGGAGCCG+AGG | - | chr3.4:68435570-68435589 | MS.gene04894:intron | 70.0% | |
| TCGCGATGGAGCCGAGGTGG+CGG | - | chr3.4:68435576-68435595 | MS.gene04894:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 68435109 | 68437903 | 68435109 | ID=MS.gene04894 |
| chr3.4 | mRNA | 68435109 | 68437903 | 68435109 | ID=MS.gene04894.t1;Parent=MS.gene04894 |
| chr3.4 | exon | 68437304 | 68437903 | 68437304 | ID=MS.gene04894.t1.exon1;Parent=MS.gene04894.t1 |
| chr3.4 | CDS | 68437304 | 68437903 | 68437304 | ID=cds.MS.gene04894.t1;Parent=MS.gene04894.t1 |
| chr3.4 | exon | 68435109 | 68435168 | 68435109 | ID=MS.gene04894.t1.exon2;Parent=MS.gene04894.t1 |
| chr3.4 | CDS | 68435109 | 68435168 | 68435109 | ID=cds.MS.gene04894.t1;Parent=MS.gene04894.t1 |
| Gene Sequence |
| Protein sequence |
