AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048965

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048965.t1 MTR_8g099785 99.194 868 7 0 34 901 1 868 0.0 1791
MS.gene048965.t1 MTR_3g491860 78.637 866 182 2 36 899 1 865 0.0 1405
MS.gene048965.t1 MTR_3g491840 74.309 868 219 3 36 901 1 866 0.0 1319
MS.gene048965.t1 MTR_1g059590 32.063 446 251 14 162 574 3 429 2.26e-43 167
MS.gene048965.t1 MTR_1g059590 31.640 433 225 14 168 574 9 396 6.03e-39 153
MS.gene048965.t1 MTR_1g112920 23.760 484 260 21 51 474 34 468 1.41e-20 98.2
MS.gene048965.t1 MTR_1g112920 23.760 484 260 21 51 474 34 468 1.69e-20 97.8
MS.gene048965.t1 MTR_2g006750 21.549 594 388 22 34 612 1 531 1.59e-12 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048965.t1 AT5G53480 81.682 868 155 3 34 899 1 866 0.0 1466
MS.gene048965.t1 AT3G08947 58.994 656 263 5 248 900 1 653 0.0 772
MS.gene048965.t1 AT3G08947 61.945 586 217 5 248 830 1 583 0.0 729
MS.gene048965.t1 AT2G16950 23.540 582 322 21 53 569 34 557 3.64e-24 109
MS.gene048965.t1 AT2G16960 24.009 429 254 14 360 742 8 410 1.56e-13 74.7
MS.gene048965.t1 AT5G19820 20.211 663 427 24 53 679 38 634 4.52e-13 73.9

Find 234 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATTGACTCCCTTCTTTC+AGG 0.134357 4.1:+4189504 MS.gene048965:CDS
CCTGGTAGTCCTCAAAATTT+TGG 0.156124 4.1:-4189984 None:intergenic
CACTTCAGGCAATTGAATTT+TGG 0.183012 4.1:+4188846 MS.gene048965:CDS
GTTATATTCTCTTCAATAAA+TGG 0.205370 4.1:-4189124 None:intergenic
ATTTCTTGTTCCCATGTTAT+TGG 0.237769 4.1:+4188973 MS.gene048965:CDS
CAGAGGATAAGCACTCTTTC+AGG 0.242624 4.1:-4190631 None:intergenic
TTACGCATTTGGCTCCATTT+TGG 0.253121 4.1:+4189180 MS.gene048965:CDS
ACTTGTGCCACTTGTGAATA+TGG 0.256386 4.1:+4189222 MS.gene048965:CDS
GCAGTATGCTGATCAAATTA+TGG 0.274415 4.1:+4189819 MS.gene048965:CDS
CAAGTCATTATTCAGAAGTT+AGG 0.280801 4.1:+4189766 MS.gene048965:CDS
TGAAGAGCCTGTTGCACTTC+AGG 0.288892 4.1:+4188832 MS.gene048965:CDS
CATCGTCAGCCCCATTAGTA+TGG 0.289010 4.1:-4190251 None:intergenic
GATACTCACTGCAGTTGTTC+AGG 0.299274 4.1:+4188538 MS.gene048965:CDS
CCACTGCTTGGGCATTTAAC+AGG 0.303789 4.1:-4188040 None:intergenic
AGCTCTCTGCCCATACTAAT+GGG 0.311132 4.1:+4190241 MS.gene048965:CDS
CCATCAGGAGCTGTGTCTTT+GGG 0.315481 4.1:-4190353 None:intergenic
GCCATCAGGAGCTGTGTCTT+TGG 0.315677 4.1:-4190354 None:intergenic
AGCAAGAGAAAATAAGAAAC+TGG 0.318864 4.1:-4188123 None:intergenic
AATGCTTGCCATTGGTGCCT+TGG 0.327556 4.1:+4189894 MS.gene048965:CDS
GAGCTCTCTGCCCATACTAA+TGG 0.341088 4.1:+4190240 MS.gene048965:CDS
GTGTCCTTCACATGATTGTT+TGG 0.347716 4.1:-4189280 None:intergenic
TTCATCTTCCCTCACAGCTT+TGG 0.350492 4.1:-4188813 None:intergenic
CAGTATGCTGATCAAATTAT+GGG 0.353241 4.1:+4189820 MS.gene048965:CDS
GGTTATGAGGATGCTGGATC+TGG 0.354727 4.1:+4189475 MS.gene048965:CDS
GTCATTATCCCATCACAATA+AGG 0.359476 4.1:-4190069 None:intergenic
TGGAGGTACTTGCCTGGGAT+TGG 0.360619 4.1:+4189060 MS.gene048965:CDS
GCAGTTTCCTTGATTGATGA+TGG 0.367706 4.1:-4189362 None:intergenic
GACACCACTGCATGGACTCT+TGG 0.370639 4.1:+4189298 MS.gene048965:CDS
CAGAAGAAAACAATGATGTT+AGG 0.370918 4.1:+4188573 MS.gene048965:CDS
TGTTCTGAGGCGGGACTCTC+CGG 0.371354 4.1:-4189569 None:intergenic
GCTTGGAACATTGCCATGGC+TGG 0.372026 4.1:+4189040 MS.gene048965:CDS
TGATCGGCAGAATGAGTTAC+AGG 0.373312 4.1:+4189723 MS.gene048965:CDS
CAGGCCTTCTCAGCAACATT+TGG 0.374330 4.1:-4189427 None:intergenic
AGGGGATGGACCTTCCAAAA+TGG 0.375158 4.1:-4189194 None:intergenic
AATAACATGGGAACAAGAAA+TGG 0.381988 4.1:-4188971 None:intergenic
AGCGAGAAAGCGAGTTAAAT+CGG 0.383479 4.1:-4186855 None:intergenic
TGATCCTGTTCTACCACATC+TGG 0.389683 4.1:-4188506 None:intergenic
TACACAAACACTTTAAGAAA+TGG 0.393810 4.1:+4190285 MS.gene048965:CDS
TTCCCCAGATGTGGTAGAAC+AGG 0.395175 4.1:+4188502 MS.gene048965:CDS
AGACCTATGCAACTGATTGC+TGG 0.396439 4.1:-4190112 None:intergenic
ACAAGTGGCACAAGTTTCTC+AGG 0.400186 4.1:-4189214 None:intergenic
TGCCCCAATGGTCGCTCAAC+TGG 0.400842 4.1:+4189642 MS.gene048965:CDS
TCCACACGTACTGCAATTCT+TGG 0.401769 4.1:+4190383 MS.gene048965:CDS
ATTGATATAATAGAAGAATA+TGG 0.402981 4.1:+4188890 MS.gene048965:CDS
TTCTACATATTATGAAAAGT+TGG 0.403663 4.1:+4188757 MS.gene048965:CDS
TGTCCTTCACATGATTGTTT+GGG 0.405785 4.1:-4189279 None:intergenic
GAAGCTGCAACTTACGCATT+TGG 0.408628 4.1:+4189169 MS.gene048965:CDS
GGTGACATTGCCTTGGCAAT+TGG 0.409678 4.1:+4190162 MS.gene048965:CDS
AAGCACGCCAATTGCTGTCT+TGG 0.411502 4.1:-4190537 None:intergenic
GCTATCACGGTGGGTGTTGT+AGG 0.417143 4.1:+4190012 MS.gene048965:CDS
AGACAACTTGAAGCAATTCC+AGG 0.417432 4.1:+4188088 MS.gene048965:CDS
CAGGAAGTCTTTGCTAGATA+CGG 0.421192 4.1:-4190612 None:intergenic
TCGAGAGTTGCTTGCCTGGT+AGG 0.422233 4.1:-4188452 None:intergenic
CCTCACAGCTTTGGCAGTGA+TGG 0.423246 4.1:-4188804 None:intergenic
AAGATCAGGACGAAGGGGCT+TGG 0.423425 4.1:+4189023 MS.gene048965:CDS
CATGGCTGGAGGTACTTGCC+TGG 0.426721 4.1:+4189054 MS.gene048965:CDS
GATAATGACCCAACTCCTTA+AGG 0.426907 4.1:+4190083 MS.gene048965:CDS
TCAATTGCCTGAAGTGCAAC+AGG 0.431951 4.1:-4188839 None:intergenic
TACAGCTCCATCCACTGCTT+GGG 0.433181 4.1:-4188051 None:intergenic
GCACGTCGGATCTTCAGTTC+AGG 0.434216 4.1:-4188707 None:intergenic
TTACAGCTCCATCCACTGCT+TGG 0.435941 4.1:-4188052 None:intergenic
CTGAACAATTTCCTGAAAGA+AGG 0.436938 4.1:-4189515 None:intergenic
TTACCAGTTGAGCGACCATT+GGG 0.439888 4.1:-4189645 None:intergenic
CGAGAGTTGCTTGCCTGGTA+GGG 0.439906 4.1:-4188451 None:intergenic
AAGACAGCAATTGGCGTGCT+TGG 0.441158 4.1:+4190539 MS.gene048965:CDS
GTGTTGTAGGTGATGTATGC+AGG 0.441369 4.1:+4190025 MS.gene048965:CDS
AACTGGGGAGATTCTGCTCC+TGG 0.442025 4.1:-4188106 None:intergenic
AGAATATAACTAAACAAGAT+TGG 0.445539 4.1:+4189137 MS.gene048965:CDS
CAGTTTCCTTGATTGATGAT+GGG 0.446294 4.1:-4189361 None:intergenic
TTTCCTCGCCCAAGGTTATG+AGG 0.447160 4.1:+4189462 MS.gene048965:CDS
TGGAGATTTAGCTGATACAT+TGG 0.448027 4.1:+4190559 MS.gene048965:CDS
GATGCAGTTGATCGAGCATC+AGG 0.449020 4.1:-4188332 None:intergenic
CAGAGAGCTCAGCAGCACTC+TGG 0.450335 4.1:-4190227 None:intergenic
ACACCACTGCATGGACTCTT+GGG 0.452875 4.1:+4189299 MS.gene048965:CDS
CTTGCAAGCAACCACATAGA+AGG 0.452890 4.1:-4189747 None:intergenic
AGATAGAATTTGTTCAAAGA+TGG 0.453096 4.1:+4188240 MS.gene048965:CDS
ATTAATTCTCAAGAATGCTC+TGG 0.453554 4.1:+4188196 MS.gene048965:CDS
CCAGAGAGTAGGAGGCTAGC+AGG 0.454749 4.1:+4188173 MS.gene048965:CDS
GTAGTCACGCTCCATATCAT+TGG 0.457398 4.1:-4188651 None:intergenic
CCTTCTGATTCTCAAGAGTC+TGG 0.458641 4.1:-4189690 None:intergenic
TCCTGAAAGAAGGGAGTCAA+TGG 0.459959 4.1:-4189505 None:intergenic
AAGCAATGGCCTGAGTTGAT+AGG 0.460469 4.1:+4188395 MS.gene048965:CDS
GATACATTGGGTAGTGCTGC+TGG 0.460884 4.1:+4190572 MS.gene048965:CDS
AGGTGATGTATGCAGGGCTT+TGG 0.461239 4.1:+4190032 MS.gene048965:CDS
GGTGCCTTGGCCTATGCGAC+CGG 0.461623 4.1:+4189907 MS.gene048965:CDS
TGCATTAAATGATGTTTCGT+TGG 0.464790 4.1:-4189799 None:intergenic
TTGGGGAACCTTTGAAACCT+TGG 0.465050 4.1:-4190335 None:intergenic
CAATGCACTGGGGTTTGCTC+AGG 0.466486 4.1:+4188619 MS.gene048965:CDS
GATCAAGGAATCTGCAGAAT+GGG 0.471174 4.1:+4190664 MS.gene048965:CDS
CCTGCTAGCCTCCTACTCTC+TGG 0.477069 4.1:-4188173 None:intergenic
ATACTCACTGCAGTTGTTCA+GGG 0.477501 4.1:+4188539 MS.gene048965:CDS
GATTGCTGGACAAATCCTTA+AGG 0.479489 4.1:-4190098 None:intergenic
CTGCTTTATAAAATAAAAGC+AGG 0.479737 4.1:-4188942 None:intergenic
TGGACAAATCCTTAAGGAGT+TGG 0.480247 4.1:-4190092 None:intergenic
TGTCTCGAGAGTTGCTTGCC+TGG 0.482603 4.1:-4188456 None:intergenic
CGTGTGGAGCATAAGCCATC+AGG 0.483270 4.1:-4190368 None:intergenic
TACTCGACCGAGTGCCAACT+TGG 0.485525 4.1:-4190687 None:intergenic
TGTTAGGCTTGCTGCCATAC+AGG 0.486349 4.1:+4188589 MS.gene048965:CDS
TGTTCAAAGATGGCTGGCTA+TGG 0.486955 4.1:+4188250 MS.gene048965:CDS
TGATGTATGCAGGGCTTTGG+AGG 0.488355 4.1:+4190035 MS.gene048965:CDS
TCCAGCATCCTCATAACCTT+GGG 0.488936 4.1:-4189470 None:intergenic
ATGCTTTGGTGACATTGCCT+TGG 0.490682 4.1:+4190155 MS.gene048965:CDS
CTCTGATGATCCTTTGATCA+AGG 0.493103 4.1:+4190649 MS.gene048965:CDS
ATCCAGCATCCTCATAACCT+TGG 0.496201 4.1:-4189471 None:intergenic
ACAGGCATTGTACAATGCAC+TGG 0.496396 4.1:+4188607 MS.gene048965:CDS
GGAGATTTAGCTGATACATT+GGG 0.496630 4.1:+4190560 MS.gene048965:CDS
GGACAAATCCTTAAGGAGTT+GGG 0.496800 4.1:-4190091 None:intergenic
GTTACCAGTTGAGCGACCAT+TGG 0.497957 4.1:-4189646 None:intergenic
TAAACAAGATTGGAGGCAAA+GGG 0.502299 4.1:+4189147 MS.gene048965:CDS
ATCAGCTTCCTGCCCCTACC+AGG 0.502327 4.1:+4188438 MS.gene048965:CDS
ATCTGCAGAATGGGCCAAGT+TGG 0.503758 4.1:+4190673 MS.gene048965:CDS
GTTGCTTGCCTGGTAGGGGC+AGG 0.509060 4.1:-4188446 None:intergenic
ATGGCTGGAGGTACTTGCCT+GGG 0.510391 4.1:+4189055 MS.gene048965:CDS
ATATGCTGCTGTTCTGAGGC+GGG 0.510421 4.1:-4189578 None:intergenic
GCTCTTTATTTCCTCGCCCA+AGG 0.513509 4.1:+4189454 MS.gene048965:CDS
GAACATCTTTCATACTCTGA+AGG 0.515677 4.1:-4189405 None:intergenic
GTTGATCGAGCATCAGGAGA+TGG 0.515853 4.1:-4188326 None:intergenic
AGAAGCCTCCAGAGAGTAGG+AGG 0.517901 4.1:+4188165 MS.gene048965:CDS
CGCATAGGCCAAGGCACCAA+TGG 0.518296 4.1:-4189902 None:intergenic
CTAAACAAGATTGGAGGCAA+AGG 0.518571 4.1:+4189146 MS.gene048965:CDS
AGAATTTGTTCAAAGATGGC+TGG 0.519883 4.1:+4188244 MS.gene048965:CDS
TGTTCCAAATGTTGCTGAGA+AGG 0.523547 4.1:+4189423 MS.gene048965:CDS
CAAGCAACTCTCGAGACACT+TGG 0.524864 4.1:+4188461 MS.gene048965:CDS
TGCATTGTACAATGCCTGTA+TGG 0.525160 4.1:-4188603 None:intergenic
AGATACGGATTGCTGAATCA+AGG 0.525366 4.1:-4190597 None:intergenic
AACTCAGGCCATTGCTTGTG+TGG 0.526011 4.1:-4188389 None:intergenic
TGATCAAGGAATCTGCAGAA+TGG 0.527584 4.1:+4190663 MS.gene048965:CDS
AAAGTACTGCCTTATTGTGA+TGG 0.528988 4.1:+4190060 MS.gene048965:CDS
CAGGCATTGTACAATGCACT+GGG 0.531316 4.1:+4188608 MS.gene048965:CDS
ACAAGAAGAAGATCAAGATC+AGG 0.532148 4.1:+4189009 MS.gene048965:CDS
GGCACAAGTTTCTCAGGGGA+TGG 0.532459 4.1:-4189208 None:intergenic
GGTATCTTCCAAGGTTTCAA+AGG 0.535621 4.1:+4190327 MS.gene048965:CDS
AAATTAAAGCATTATTGTTG+AGG 0.536926 4.1:+4188291 MS.gene048965:CDS
ATGATGTTTCGTTGGTTCAG+AGG 0.542632 4.1:-4189791 None:intergenic
GAGAGTTGCTTGCCTGGTAG+GGG 0.543011 4.1:-4188450 None:intergenic
GTTGTGACCAAGACAGCAAT+TGG 0.543566 4.1:+4190530 MS.gene048965:CDS
CAAGTTGTAGCAAAAGTAGC+TGG 0.546666 4.1:+4188356 MS.gene048965:CDS
CTGTTCGTGCAACCAATCCC+AGG 0.547121 4.1:-4189072 None:intergenic
TAGCAGTGTCTCCAATAACA+TGG 0.549544 4.1:-4188984 None:intergenic
AAGCAGTGGATGGAGCTGTA+AGG 0.550403 4.1:+4188054 MS.gene048965:CDS
CTTCATATGCTGCTGTTCTG+AGG 0.550654 4.1:-4189582 None:intergenic
CATCACTGCCAAAGCTGTGA+GGG 0.552784 4.1:+4188805 MS.gene048965:CDS
GGAGCACAGTAATGATCTGT+TGG 0.553103 4.1:-4189384 None:intergenic
GATCCTGTTCTACCACATCT+GGG 0.553388 4.1:-4188505 None:intergenic
AAACTCAGTGCCGGTCGCAT+AGG 0.553961 4.1:-4189917 None:intergenic
GGAATCCTCGAGGCATACTC+AGG 0.554014 4.1:+4190306 MS.gene048965:CDS
CATATGCTGCTGTTCTGAGG+CGG 0.555202 4.1:-4189579 None:intergenic
TCTGCAGATTCCTTGATCAA+AGG 0.555512 4.1:-4190659 None:intergenic
GCCCAAGGTTATGAGGATGC+TGG 0.556275 4.1:+4189469 MS.gene048965:CDS
AAAGTTCTCTCCAATTGCCA+AGG 0.557612 4.1:-4190172 None:intergenic
TCAGCAGCACTCTGGAGCAT+AGG 0.557925 4.1:-4190219 None:intergenic
AAGATCAAGATCAGGACGAA+GGG 0.561937 4.1:+4189017 MS.gene048965:CDS
CCCAAAGACACAGCTCCTGA+TGG 0.562014 4.1:+4190353 MS.gene048965:CDS
AGTTTCCTTGATTGATGATG+GGG 0.562642 4.1:-4189360 None:intergenic
GCATACTCAGGTATCTTCCA+AGG 0.563345 4.1:+4190318 MS.gene048965:CDS
GGACAGTTTGTATAATGAGA+AGG 0.563358 4.1:+4190404 MS.gene048965:CDS
GTTATGAGGATGCTGGATCT+GGG 0.563729 4.1:+4189476 MS.gene048965:CDS
AGTGCCGGTCGCATAGGCCA+AGG 0.564121 4.1:-4189911 None:intergenic
TGAACAATTTCCTGAAAGAA+GGG 0.564391 4.1:-4189514 None:intergenic
TTGAGTTGCCACACAAGCAA+TGG 0.565914 4.1:+4188381 MS.gene048965:CDS
TGTCCAGCAATCAGTTGCAT+AGG 0.567618 4.1:+4190109 MS.gene048965:CDS
GAATGGGCCAAGTTGGCACT+CGG 0.568465 4.1:+4190680 MS.gene048965:CDS
CAGGTTTGTGCTATCACGGT+GGG 0.569193 4.1:+4190003 MS.gene048965:CDS
CAGGATCTGTGTAACTTCCA+TGG 0.570571 4.1:-4188021 None:intergenic
AAGTACTGCCTTATTGTGAT+GGG 0.570745 4.1:+4190061 MS.gene048965:CDS
CTACCAGGTTTGTGCTATCA+CGG 0.572808 4.1:+4189999 MS.gene048965:CDS
CCACCGTGATAGCACAAACC+TGG 0.572956 4.1:-4190002 None:intergenic
ACTGGTAACTGTCATCATGA+TGG 0.574454 4.1:+4189660 MS.gene048965:CDS
AAGTGCAACGGCTCATGAAG+AGG 0.576373 4.1:+4189870 MS.gene048965:CDS
GATACGGATTGCTGAATCAA+GGG 0.577574 4.1:-4190596 None:intergenic
TTAAATGCCCAAGCAGTGGA+TGG 0.577816 4.1:+4188044 MS.gene048965:CDS
ACGAGAAGCCTCCAGAGAGT+AGG 0.581280 4.1:+4188162 MS.gene048965:CDS
CAAGTGGCACAAGTTTCTCA+GGG 0.582115 4.1:-4189213 None:intergenic
ATTTGCTTCTCGAAGTGCAA+CGG 0.582177 4.1:+4189858 MS.gene048965:CDS
ATCGTCAGCCCCATTAGTAT+GGG 0.583986 4.1:-4190250 None:intergenic
GAGTTACAGGGCCTTCTATG+TGG 0.585544 4.1:+4189736 MS.gene048965:CDS
CATCAGGAGCTGTGTCTTTG+GGG 0.586130 4.1:-4190352 None:intergenic
TAATGATGATACTGCCCCAA+TGG 0.589216 4.1:+4189630 MS.gene048965:CDS
AGAAGGTCTCATCTGATGAT+CGG 0.590815 4.1:+4189707 MS.gene048965:CDS
GAATATGGTGGTGAGTTTAG+CGG 0.591705 4.1:+4188905 MS.gene048965:CDS
CATCCTCATAACCTTGGGCG+AGG 0.592160 4.1:-4189465 None:intergenic
GAGGAAATAAAGAGCCCCAC+AGG 0.592672 4.1:-4189446 None:intergenic
TGAAGAAGTTTCCCCAGATG+TGG 0.592903 4.1:+4188493 MS.gene048965:CDS
TGGTGATGATATCGTGCCGC+TGG 0.593663 4.1:+4189096 MS.gene048965:CDS
CATGCTTAATGCACTGACAA+AGG 0.595219 4.1:+4189255 MS.gene048965:CDS
CTTCAGTTCAGGAGAAAGAG+TGG 0.596383 4.1:-4188696 None:intergenic
GCAAGAGAAAATAAGAAACT+GGG 0.596667 4.1:-4188122 None:intergenic
TGTTGTAGGTGATGTATGCA+GGG 0.599790 4.1:+4190026 MS.gene048965:CDS
AAGAGAGATCCTATCAACTC+AGG 0.600840 4.1:-4188404 None:intergenic
ATGTTGCTGAGAAGGCCTGT+GGG 0.602231 4.1:+4189431 MS.gene048965:CDS
GAAGAGGCAATGCTTGCCAT+TGG 0.606299 4.1:+4189886 MS.gene048965:CDS
ATATAACTAAACAAGATTGG+AGG 0.606900 4.1:+4189140 MS.gene048965:CDS
CCTGTTAAATGCCCAAGCAG+TGG 0.608616 4.1:+4188040 MS.gene048965:CDS
CTCAAAGCCATATTCACAAG+TGG 0.609599 4.1:-4189229 None:intergenic
TCCAAGAATTGCAGTACGTG+TGG 0.611322 4.1:-4190384 None:intergenic
ATGTGAAGGACACCACTGCA+TGG 0.613716 4.1:+4189290 MS.gene048965:CDS
CAGGCAAGTACCTCCAGCCA+TGG 0.613963 4.1:-4189053 None:intergenic
GAAGATCAAGATCAGGACGA+AGG 0.615536 4.1:+4189016 MS.gene048965:CDS
GGATTGGTTGCACGAACAGT+TGG 0.618513 4.1:+4189076 MS.gene048965:CDS
ATACGGATTGCTGAATCAAG+GGG 0.621023 4.1:-4190595 None:intergenic
CCAGACTCTTGAGAATCAGA+AGG 0.621657 4.1:+4189690 MS.gene048965:CDS
AGCAGTGTCTCCAATAACAT+GGG 0.623959 4.1:-4188983 None:intergenic
TGGAACATTGCCATGGCTGG+AGG 0.625120 4.1:+4189043 MS.gene048965:CDS
GCTAGCCTCCTACTCTCTGG+AGG 0.627410 4.1:-4188170 None:intergenic
GTATTTAAGAAACTCAGTGC+CGG 0.628766 4.1:-4189926 None:intergenic
GTTTCCTTGATTGATGATGG+GGG 0.631049 4.1:-4189359 None:intergenic
GCTCTCTGCCCATACTAATG+GGG 0.634636 4.1:+4190242 MS.gene048965:CDS
TGCTTTATAAAATAAAAGCA+GGG 0.635578 4.1:-4188941 None:intergenic
TCAATAAATGGCATGACCAG+CGG 0.635810 4.1:-4189112 None:intergenic
GGACCCAAACAATCATGTGA+AGG 0.641028 4.1:+4189276 MS.gene048965:CDS
AGGGGCAGGAAGCTGATGAA+CGG 0.641795 4.1:-4188432 None:intergenic
GATATAATAGAAGAATATGG+TGG 0.651482 4.1:+4188893 MS.gene048965:CDS
AGGGGCTTGGAACATTGCCA+TGG 0.653146 4.1:+4189036 MS.gene048965:CDS
CCATCACTGCCAAAGCTGTG+AGG 0.657942 4.1:+4188804 MS.gene048965:CDS
AATGTTGCTGAGAAGGCCTG+TGG 0.660902 4.1:+4189430 MS.gene048965:CDS
CCAGGTTTGTGCTATCACGG+TGG 0.662189 4.1:+4190002 MS.gene048965:CDS
AAAGAAGGGAGTCAATGGAG+AGG 0.666954 4.1:-4189500 None:intergenic
CTTGATCAAAGGATCATCAG+AGG 0.667213 4.1:-4190648 None:intergenic
ATCCTGTTCTACCACATCTG+GGG 0.668216 4.1:-4188504 None:intergenic
CAAGAGAAAATAAGAAACTG+GGG 0.669093 4.1:-4188121 None:intergenic
TGTTGCTGAGAAGGCCTGTG+GGG 0.670031 4.1:+4189432 MS.gene048965:CDS
GATCGGCAGAATGAGTTACA+GGG 0.670106 4.1:+4189724 MS.gene048965:CDS
AGATCAAGATCAGGACGAAG+GGG 0.673526 4.1:+4189018 MS.gene048965:CDS
AGTGAAAAGTGAGTGAAGCG+CGG 0.697103 4.1:-4186798 None:intergenic
TCGCCCAAGAGTCCATGCAG+TGG 0.699413 4.1:-4189302 None:intergenic
GTAACTCACAGAGAGGACAC+CGG 0.704952 4.1:+4189550 MS.gene048965:CDS
TTTAAGAAATGGAATCCTCG+AGG 0.714463 4.1:+4190296 MS.gene048965:CDS
AGCATTCAAAAGCTGCACGT+CGG 0.714957 4.1:-4188721 None:intergenic
AAGCTCTGAATGAAGTAGTG+AGG 0.725661 4.1:+4189602 MS.gene048965:CDS
TACCAGTTGAGCGACCATTG+GGG 0.742764 4.1:-4189644 None:intergenic
AAGTGGCACAAGTTTCTCAG+GGG 0.744442 4.1:-4189212 None:intergenic
TCTCACTGTAACTCACAGAG+AGG 0.768022 4.1:+4189543 MS.gene048965:CDS
AGATACCTGAGTATGCCTCG+AGG 0.782208 4.1:-4190311 None:intergenic
AGGCATTGTACAATGCACTG+GGG 0.801386 4.1:+4188609 MS.gene048965:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTAATTTAATTAAATA+GGG - chr4.1:4186563-4186582 None:intergenic 0.0%
!!! TAAATTTAATTTAATTAAAT+AGG - chr4.1:4186564-4186583 None:intergenic 0.0%
!! ATTAAAAAAAATCAACAAAA+AGG - chr4.1:4187853-4187872 None:intergenic 10.0%
!! TAATTAAAAAAAAAAAAAGC+AGG - chr4.1:4187659-4187678 None:intergenic 10.0%
!! TTAAAAAAAATCAACAAAAA+GGG - chr4.1:4187852-4187871 None:intergenic 10.0%
!! TTTCATTTATTATATTCTTA+TGG + chr4.1:4187267-4187286 MS.gene048965:intron 10.0%
!!! AATTAGTATTTTTATCTAAT+CGG + chr4.1:4187088-4187107 MS.gene048965:intron 10.0%
!! AATTATCATTCTTATTGAAA+TGG + chr4.1:4187423-4187442 MS.gene048965:intron 15.0%
!! ATTAACAATATTTGAATGAA+CGG + chr4.1:4186641-4186660 MS.gene048965:intron 15.0%
!! ATTGATATAATAGAAGAATA+TGG + chr4.1:4188890-4188909 MS.gene048965:CDS 15.0%
!! TAAAAAAAATCAACAAAAAG+GGG - chr4.1:4187851-4187870 None:intergenic 15.0%
!!! AGATATGCTTTTTATTTTTA+AGG - chr4.1:4186372-4186391 None:intergenic 15.0%
!!! ATTGGTTTTATATTCAAATT+GGG + chr4.1:4187481-4187500 MS.gene048965:intron 15.0%
!!! TCTATTTTGATTTTGATTAT+GGG + chr4.1:4187224-4187243 MS.gene048965:intron 15.0%
!! AAAAAAAATCAACAAAAAGG+GGG - chr4.1:4187850-4187869 None:intergenic 20.0%
!! AGAACAAATAGCATAAATAA+AGG - chr4.1:4187980-4187999 None:intergenic 20.0%
!! AGAATATAACTAAACAAGAT+TGG + chr4.1:4189137-4189156 MS.gene048965:CDS 20.0%
!! GAACAAATAGCATAAATAAA+GGG - chr4.1:4187979-4187998 None:intergenic 20.0%
!! GAGAAACAAAAATTTAACAT+TGG + chr4.1:4186726-4186745 MS.gene048965:intron 20.0%
!! GTTATATTCTCTTCAATAAA+TGG - chr4.1:4189127-4189146 None:intergenic 20.0%
!! TGCTTTATAAAATAAAAGCA+GGG - chr4.1:4188944-4188963 None:intergenic 20.0%
!! TTCTACATATTATGAAAAGT+TGG + chr4.1:4188757-4188776 MS.gene048965:CDS 20.0%
!! TTTATATCTTGAATCATTTG+TGG + chr4.1:4187698-4187717 MS.gene048965:intron 20.0%
!!! AAATTAAAGCATTATTGTTG+AGG + chr4.1:4188291-4188310 MS.gene048965:CDS 20.0%
!!! CATTGGTTTTATATTCAAAT+TGG + chr4.1:4187480-4187499 MS.gene048965:intron 20.0%
!!! CTATTTTGATTTTGATTATG+GGG + chr4.1:4187225-4187244 MS.gene048965:intron 20.0%
!!! CTCTATTTTGATTTTGATTA+TGG + chr4.1:4187223-4187242 MS.gene048965:intron 20.0%
!!! TTCGTTAACTATCATTTTTA+GGG + chr4.1:4187060-4187079 MS.gene048965:intron 20.0%
!!! TTGCATCAATTGTTTTTTTA+GGG + chr4.1:4190502-4190521 MS.gene048965:intron 20.0%
!!! TTGGTTTTATATTCAAATTG+GGG + chr4.1:4187482-4187501 MS.gene048965:intron 20.0%
!!! TTTCGTTAACTATCATTTTT+AGG + chr4.1:4187059-4187078 MS.gene048965:intron 20.0%
!!! TTTGCATCAATTGTTTTTTT+AGG + chr4.1:4190501-4190520 MS.gene048965:intron 20.0%
! ACATTCCTCAAAAAAATACA+AGG - chr4.1:4187197-4187216 None:intergenic 25.0%
! ATATAACTAAACAAGATTGG+AGG + chr4.1:4189140-4189159 MS.gene048965:CDS 25.0%
! ATGATTAATGTTGGTCAAAT+TGG + chr4.1:4187508-4187527 MS.gene048965:intron 25.0%
! ATTCCTCAAAAAAATACAAG+GGG - chr4.1:4187195-4187214 None:intergenic 25.0%
! CATTCCTCAAAAAAATACAA+GGG - chr4.1:4187196-4187215 None:intergenic 25.0%
! CTGCTTTATAAAATAAAAGC+AGG - chr4.1:4188945-4188964 None:intergenic 25.0%
! GATATAATAGAAGAATATGG+TGG + chr4.1:4188893-4188912 MS.gene048965:CDS 25.0%
! GTAGAAGCGAATATAAAAAA+GGG + chr4.1:4186698-4186717 MS.gene048965:intron 25.0%
! GTTTATTGTTGAGATATCAT+TGG + chr4.1:4187463-4187482 MS.gene048965:intron 25.0%
! TAGAAGCGAATATAAAAAAG+GGG + chr4.1:4186699-4186718 MS.gene048965:intron 25.0%
! TGATTAATGTTGGTCAAATT+GGG + chr4.1:4187509-4187528 MS.gene048965:intron 25.0%
!! AATACATGCAAGAATTTTAC+AGG + chr4.1:4189944-4189963 MS.gene048965:CDS 25.0%
!! AGATAGAATTTGTTCAAAGA+TGG + chr4.1:4188240-4188259 MS.gene048965:CDS 25.0%
!! CAAATATATGATCCTCTTTT+TGG - chr4.1:4186449-4186468 None:intergenic 25.0%
!! CATATTTTGTAACCAAAAAG+AGG + chr4.1:4186434-4186453 MS.gene048965:intron 25.0%
!! CTATTTGTTCTGTATGTTTT+AGG + chr4.1:4187989-4188008 MS.gene048965:intron 25.0%
!!! CTGCTTTTATTTTATAAAGC+AGG + chr4.1:4188943-4188962 MS.gene048965:CDS 25.0%
!!! GCTTTTTATTTTTAAGGAGA+AGG - chr4.1:4186366-4186385 None:intergenic 25.0%
AATAACATGGGAACAAGAAA+TGG - chr4.1:4188974-4188993 None:intergenic 30.0%
ACTAGCAACATAAACATGTT+AGG - chr4.1:4187931-4187950 None:intergenic 30.0%
AGAAGAGAGAAAAAACAACT+GGG + chr4.1:4186531-4186550 MS.gene048965:intron 30.0%
AGCAAGAGAAAATAAGAAAC+TGG - chr4.1:4188126-4188145 None:intergenic 30.0%
ATTAATTCTCAAGAATGCTC+TGG + chr4.1:4188196-4188215 MS.gene048965:CDS 30.0%
ATTTCTTGTTCCCATGTTAT+TGG + chr4.1:4188973-4188992 MS.gene048965:CDS 30.0%
CAAAAAAATACAAGGGGATT+AGG - chr4.1:4187189-4187208 None:intergenic 30.0%
CAAGAGAAAATAAGAAACTG+GGG - chr4.1:4188124-4188143 None:intergenic 30.0%
CAAGTCATTATTCAGAAGTT+AGG + chr4.1:4189766-4189785 MS.gene048965:CDS 30.0%
CAGAAGAAAACAATGATGTT+AGG + chr4.1:4188573-4188592 MS.gene048965:CDS 30.0%
CAGTATGCTGATCAAATTAT+GGG + chr4.1:4189820-4189839 MS.gene048965:CDS 30.0%
GATAAGAGAAAATCAACGAA+AGG - chr4.1:4186894-4186913 None:intergenic 30.0%
GATCTGTTGTCTTTATATTG+TGG + chr4.1:4187289-4187308 MS.gene048965:intron 30.0%
GATTAATGTTGGTCAAATTG+GGG + chr4.1:4187510-4187529 MS.gene048965:intron 30.0%
GCAAGAGAAAATAAGAAACT+GGG - chr4.1:4188125-4188144 None:intergenic 30.0%
GGTAGAAGCGAATATAAAAA+AGG + chr4.1:4186697-4186716 MS.gene048965:intron 30.0%
GTCAAATTAGGGTTTATGAT+TGG + chr4.1:4187335-4187354 MS.gene048965:intron 30.0%
TCACCAAAGCATGAAAAAAT+CGG - chr4.1:4190147-4190166 None:intergenic 30.0%
TGAACAATTTCCTGAAAGAA+GGG - chr4.1:4189517-4189536 None:intergenic 30.0%
TGCATTAAATGATGTTTCGT+TGG - chr4.1:4189802-4189821 None:intergenic 30.0%
TGTCTTTATATTGTGGTATG+CGG + chr4.1:4187296-4187315 MS.gene048965:intron 30.0%
TTGGGGTTTATGATTAATGT+TGG + chr4.1:4187499-4187518 MS.gene048965:intron 30.0%
! ATTTTACAGGTATATGGAGA+TGG + chr4.1:4189957-4189976 MS.gene048965:CDS 30.0%
! GCAAGAATTTTACAGGTATA+TGG + chr4.1:4189951-4189970 MS.gene048965:CDS 30.0%
! GGCAAATTTTTCCAATGATA+TGG + chr4.1:4188640-4188659 MS.gene048965:CDS 30.0%
! TGAGTGATGTTGGTAAAATT+GGG + chr4.1:4187593-4187612 MS.gene048965:intron 30.0%
! TGTGTGTATTTTCCTGTTAT+GGG + chr4.1:4187793-4187812 MS.gene048965:intron 30.0%
! TTGAGTGATGTTGGTAAAAT+TGG + chr4.1:4187592-4187611 MS.gene048965:intron 30.0%
! TTTTACAGGTATATGGAGAT+GGG + chr4.1:4189958-4189977 MS.gene048965:CDS 30.0%
!! ATGCGTTTAAGTTGTAGTTT+GGG + chr4.1:4187881-4187900 MS.gene048965:intron 30.0%
!! CACTAATAATGGGTAATACA+AGG - chr4.1:4187763-4187782 None:intergenic 30.0%
!! TATGCGTTTAAGTTGTAGTT+TGG + chr4.1:4187880-4187899 MS.gene048965:intron 30.0%
!!! AATCCCCTTGTATTTTTTTG+AGG + chr4.1:4187189-4187208 MS.gene048965:intron 30.0%
!!! AGTTTCTTATTTTCTCTTGC+TGG + chr4.1:4188125-4188144 MS.gene048965:CDS 30.0%
!!! ATGATTGGTTTTGGTCTAAT+TGG + chr4.1:4187350-4187369 MS.gene048965:intron 30.0%
!!! CTGTATGTTTTAGGTTAAGA+TGG + chr4.1:4187998-4188017 MS.gene048965:intron 30.0%
!!! TGATTGGTTTTGGTCTAATT+GGG + chr4.1:4187351-4187370 MS.gene048965:intron 30.0%
!!! TTAGGGTTTATGATTGGTTT+TGG + chr4.1:4187341-4187360 MS.gene048965:intron 30.0%
AAATAACGAACTCGGATCAA+CGG - chr4.1:4186964-4186983 None:intergenic 35.0%
ACAACCCATATTCACAAACA+AGG - chr4.1:4187820-4187839 None:intergenic 35.0%
ACAAGAAGAAGATCAAGATC+AGG + chr4.1:4189009-4189028 MS.gene048965:CDS 35.0%
ATATTGTGGTATGCGGTTTA+TGG + chr4.1:4187303-4187322 MS.gene048965:intron 35.0%
CAGAAGAGAGAAAAAACAAC+TGG + chr4.1:4186530-4186549 MS.gene048965:intron 35.0%
CCCTAGATAAATAACGAACT+CGG - chr4.1:4186972-4186991 None:intergenic 35.0%
CCCTATGATTATCTCATCAA+CGG - chr4.1:4186616-4186635 None:intergenic 35.0%
CCGAGTTCGTTATTTATCTA+GGG + chr4.1:4186969-4186988 MS.gene048965:intron 35.0%
CTGAACAATTTCCTGAAAGA+AGG - chr4.1:4189518-4189537 None:intergenic 35.0%
GAACATCTTTCATACTCTGA+AGG - chr4.1:4189408-4189427 None:intergenic 35.0%
GCAGTATGCTGATCAAATTA+TGG + chr4.1:4189819-4189838 MS.gene048965:CDS 35.0%
GGACAGTTTGTATAATGAGA+AGG + chr4.1:4190404-4190423 MS.gene048965:CDS 35.0%
GGAGATTTAGCTGATACATT+GGG + chr4.1:4190560-4190579 MS.gene048965:CDS 35.0%
GTATTTAAGAAACTCAGTGC+CGG - chr4.1:4189929-4189948 None:intergenic 35.0%
GTCATTATCCCATCACAATA+AGG - chr4.1:4190072-4190091 None:intergenic 35.0%
GTCTAATTGGGGTTTATGAT+TGG + chr4.1:4187363-4187382 MS.gene048965:intron 35.0%
TAAACAAGATTGGAGGCAAA+GGG + chr4.1:4189147-4189166 MS.gene048965:CDS 35.0%
TCCGAGTTCGTTATTTATCT+AGG + chr4.1:4186968-4186987 MS.gene048965:intron 35.0%
TGGAGATTTAGCTGATACAT+TGG + chr4.1:4190559-4190578 MS.gene048965:CDS 35.0%
TGTCCTTCACATGATTGTTT+GGG - chr4.1:4189282-4189301 None:intergenic 35.0%
TTGATGAGATAATCATAGGG+CGG + chr4.1:4186616-4186635 MS.gene048965:intron 35.0%
TTGGTCAAATTGGGGTTTAT+GGG + chr4.1:4187388-4187407 MS.gene048965:intron 35.0%
! AAGTACTGCCTTATTGTGAT+GGG + chr4.1:4190061-4190080 MS.gene048965:CDS 35.0%
! AGAATTTGTTCAAAGATGGC+TGG + chr4.1:4188244-4188263 MS.gene048965:CDS 35.0%
! ATTTTCTCTTGCTGGAGAAT+TGG + chr4.1:4188133-4188152 MS.gene048965:CDS 35.0%
! CACTTCAGGCAATTGAATTT+TGG + chr4.1:4188846-4188865 MS.gene048965:CDS 35.0%
! CAGTTTCCTTGATTGATGAT+GGG - chr4.1:4189364-4189383 None:intergenic 35.0%
! CCGTTGATGAGATAATCATA+GGG + chr4.1:4186613-4186632 MS.gene048965:intron 35.0%
! GAGTGATGTTGGTAAAATTG+GGG + chr4.1:4187594-4187613 MS.gene048965:intron 35.0%
! GTGTGTGTATTTTCCTGTTA+TGG + chr4.1:4187792-4187811 MS.gene048965:intron 35.0%
! TAATGGGTAATACAAGGACA+CGG - chr4.1:4187757-4187776 None:intergenic 35.0%
!! AAAGTACTGCCTTATTGTGA+TGG + chr4.1:4190060-4190079 MS.gene048965:CDS 35.0%
!! AGTTTCCTTGATTGATGATG+GGG - chr4.1:4189363-4189382 None:intergenic 35.0%
!! ATGATTGGTGTTGGTCAAAT+TGG + chr4.1:4187378-4187397 MS.gene048965:intron 35.0%
!! TGATTGGTGTTGGTCAAATT+GGG + chr4.1:4187379-4187398 MS.gene048965:intron 35.0%
!!! GATTGGTTTTGGTCTAATTG+GGG + chr4.1:4187352-4187371 MS.gene048965:intron 35.0%
AAAGTTCTCTCCAATTGCCA+AGG - chr4.1:4190175-4190194 None:intergenic 40.0%
AACCCTAATTTGACCAACAC+TGG - chr4.1:4187329-4187348 None:intergenic 40.0%
AAGAGAGATCCTATCAACTC+AGG - chr4.1:4188407-4188426 None:intergenic 40.0%
AAGATCAAGATCAGGACGAA+GGG + chr4.1:4189017-4189036 MS.gene048965:CDS 40.0%
ACTGGTAACTGTCATCATGA+TGG + chr4.1:4189660-4189679 MS.gene048965:CDS 40.0%
AGAAGGTCTCATCTGATGAT+CGG + chr4.1:4189707-4189726 MS.gene048965:CDS 40.0%
AGACAACTTGAAGCAATTCC+AGG + chr4.1:4188088-4188107 MS.gene048965:CDS 40.0%
AGCAGTGTCTCCAATAACAT+GGG - chr4.1:4188986-4189005 None:intergenic 40.0%
AGCGAGAAAGCGAGTTAAAT+CGG - chr4.1:4186858-4186877 None:intergenic 40.0%
ATACTCACTGCAGTTGTTCA+GGG + chr4.1:4188539-4188558 MS.gene048965:CDS 40.0%
ATGGGTGATCTTGGTCAAAT+TGG + chr4.1:4187536-4187555 MS.gene048965:intron 40.0%
ATTGATGCTCGCTGTTTGTT+TGG + chr4.1:4187132-4187151 MS.gene048965:intron 40.0%
ATTTGCTTCTCGAAGTGCAA+CGG + chr4.1:4189858-4189877 MS.gene048965:CDS 40.0%
CAAGTTGTAGCAAAAGTAGC+TGG + chr4.1:4188356-4188375 MS.gene048965:CDS 40.0%
CAGGAAGTCTTTGCTAGATA+CGG - chr4.1:4190615-4190634 None:intergenic 40.0%
CCAAAGCATGAAAAAATCGG+AGG - chr4.1:4190144-4190163 None:intergenic 40.0%
CTAAACAAGATTGGAGGCAA+AGG + chr4.1:4189146-4189165 MS.gene048965:CDS 40.0%
CTCAAAGCCATATTCACAAG+TGG - chr4.1:4189232-4189251 None:intergenic 40.0%
CTCTGATGATCCTTTGATCA+AGG + chr4.1:4190649-4190668 MS.gene048965:CDS 40.0%
CTTGATCAAAGGATCATCAG+AGG - chr4.1:4190651-4190670 None:intergenic 40.0%
CTTGGTCAAATTGGGGTTTA+TGG + chr4.1:4187545-4187564 MS.gene048965:intron 40.0%
GAGAAAAAACAACTGGGCTT+AGG + chr4.1:4186537-4186556 MS.gene048965:intron 40.0%
GATAATGACCCAACTCCTTA+AGG + chr4.1:4190083-4190102 MS.gene048965:CDS 40.0%
GATCAAGGAATCTGCAGAAT+GGG + chr4.1:4190664-4190683 MS.gene048965:CDS 40.0%
GATTGCTGGACAAATCCTTA+AGG - chr4.1:4190101-4190120 None:intergenic 40.0%
GCAGTTTCCTTGATTGATGA+TGG - chr4.1:4189365-4189384 None:intergenic 40.0%
GGACAAATCCTTAAGGAGTT+GGG - chr4.1:4190094-4190113 None:intergenic 40.0%
GGTATCTTCCAAGGTTTCAA+AGG + chr4.1:4190327-4190346 MS.gene048965:CDS 40.0%
GTCAAATTGGGGTTTATCAG+TGG + chr4.1:4187391-4187410 MS.gene048965:intron 40.0%
GTGTCCTTCACATGATTGTT+TGG - chr4.1:4189283-4189302 None:intergenic 40.0%
GTTGGTCAAATTGGGGTTTA+TGG + chr4.1:4187387-4187406 MS.gene048965:intron 40.0%
TAATACAAGGACACGGAACA+GGG - chr4.1:4187750-4187769 None:intergenic 40.0%
TAATGATGATACTGCCCCAA+TGG + chr4.1:4189630-4189649 MS.gene048965:CDS 40.0%
TAGCAGTGTCTCCAATAACA+TGG - chr4.1:4188987-4189006 None:intergenic 40.0%
TCAATAAATGGCATGACCAG+CGG - chr4.1:4189115-4189134 None:intergenic 40.0%
TCTGCAGATTCCTTGATCAA+AGG - chr4.1:4190662-4190681 None:intergenic 40.0%
TGATCAAGGAATCTGCAGAA+TGG + chr4.1:4190663-4190682 MS.gene048965:CDS 40.0%
TGCATTGTACAATGCCTGTA+TGG - chr4.1:4188606-4188625 None:intergenic 40.0%
TGGACAAATCCTTAAGGAGT+TGG - chr4.1:4190095-4190114 None:intergenic 40.0%
TGGGTGATCTTGGTCAAATT+GGG + chr4.1:4187537-4187556 MS.gene048965:intron 40.0%
TGTTCCAAATGTTGCTGAGA+AGG + chr4.1:4189423-4189442 MS.gene048965:CDS 40.0%
TGTTGTAGGTGATGTATGCA+GGG + chr4.1:4190026-4190045 MS.gene048965:CDS 40.0%
TTCAAGCAGGGGATTCATAT+GGG - chr4.1:4186475-4186494 None:intergenic 40.0%
TTGGGGTTTATGATTGGTGT+TGG + chr4.1:4187369-4187388 MS.gene048965:intron 40.0%
TTTCAAGCAGGGGATTCATA+TGG - chr4.1:4186476-4186495 None:intergenic 40.0%
! AGATACGGATTGCTGAATCA+AGG - chr4.1:4190600-4190619 None:intergenic 40.0%
! ATACGGATTGCTGAATCAAG+GGG - chr4.1:4190598-4190617 None:intergenic 40.0%
! CATGCTTAATGCACTGACAA+AGG + chr4.1:4189255-4189274 MS.gene048965:CDS 40.0%
! CCTGGTAGTCCTCAAAATTT+TGG - chr4.1:4189987-4190006 None:intergenic 40.0%
! GAATATGGTGGTGAGTTTAG+CGG + chr4.1:4188905-4188924 MS.gene048965:CDS 40.0%
! GATACGGATTGCTGAATCAA+GGG - chr4.1:4190599-4190618 None:intergenic 40.0%
! GATGGGTCTCCAAAATTTTG+AGG + chr4.1:4189975-4189994 MS.gene048965:CDS 40.0%
! GCCGTTGATGAGATAATCAT+AGG + chr4.1:4186612-4186631 MS.gene048965:intron 40.0%
! GGGTCCTTGTTTGTGAATAT+GGG + chr4.1:4187813-4187832 MS.gene048965:intron 40.0%
! TGGGTCCTTGTTTGTGAATA+TGG + chr4.1:4187812-4187831 MS.gene048965:intron 40.0%
!! AAGCTCTGAATGAAGTAGTG+AGG + chr4.1:4189602-4189621 MS.gene048965:CDS 40.0%
!! ACTTGTGCCACTTGTGAATA+TGG + chr4.1:4189222-4189241 MS.gene048965:CDS 40.0%
!! ATGATGTTTCGTTGGTTCAG+AGG - chr4.1:4189794-4189813 None:intergenic 40.0%
!! CCAAAATTTTGAGGACTACC+AGG + chr4.1:4189984-4190003 MS.gene048965:CDS 40.0%
!! CGAATGTTCGAGTTTTTGCA+CGG + chr4.1:4189322-4189341 MS.gene048965:CDS 40.0%
!! GATTGGTGTTGGTCAAATTG+GGG + chr4.1:4187380-4187399 MS.gene048965:intron 40.0%
!! GTTTCCTTGATTGATGATGG+GGG - chr4.1:4189362-4189381 None:intergenic 40.0%
!! TTACGCATTTGGCTCCATTT+TGG + chr4.1:4189180-4189199 MS.gene048965:CDS 40.0%
!! TTGGGGATTTTGAGTGATGT+TGG + chr4.1:4187583-4187602 MS.gene048965:intron 40.0%
!!! CCTCCGATTTTTTCATGCTT+TGG + chr4.1:4190141-4190160 MS.gene048965:CDS 40.0%
!!! GTTTTAGGTTAAGATGGCCA+TGG + chr4.1:4188004-4188023 MS.gene048965:intron 40.0%
AAAGAAGGGAGTCAATGGAG+AGG - chr4.1:4189503-4189522 None:intergenic 45.0%
AAGTGGCACAAGTTTCTCAG+GGG - chr4.1:4189215-4189234 None:intergenic 45.0%
AATACAAGGACACGGAACAG+GGG - chr4.1:4187749-4187768 None:intergenic 45.0%
ACAAGTGGCACAAGTTTCTC+AGG - chr4.1:4189217-4189236 None:intergenic 45.0%
ACACACGCACGCACTAATAA+TGG - chr4.1:4187774-4187793 None:intergenic 45.0%
AGACCTATGCAACTGATTGC+TGG - chr4.1:4190115-4190134 None:intergenic 45.0%
AGATCAAGATCAGGACGAAG+GGG + chr4.1:4189018-4189037 MS.gene048965:CDS 45.0%
AGCATTCAAAAGCTGCACGT+CGG - chr4.1:4188724-4188743 None:intergenic 45.0%
AGCTCTCTGCCCATACTAAT+GGG + chr4.1:4190241-4190260 MS.gene048965:CDS 45.0%
AGTGAAAAGTGAGTGAAGCG+CGG - chr4.1:4186801-4186820 None:intergenic 45.0%
ATCCAGCATCCTCATAACCT+TGG - chr4.1:4189474-4189493 None:intergenic 45.0%
ATCCTGTTCTACCACATCTG+GGG - chr4.1:4188507-4188526 None:intergenic 45.0%
ATCGTCAGCCCCATTAGTAT+GGG - chr4.1:4190253-4190272 None:intergenic 45.0%
CAAGTGGCACAAGTTTCTCA+GGG - chr4.1:4189216-4189235 None:intergenic 45.0%
CACAAACAAGGACCCATAAC+AGG - chr4.1:4187808-4187827 None:intergenic 45.0%
CACACGCACGCACTAATAAT+GGG - chr4.1:4187773-4187792 None:intergenic 45.0%
CAGAGGATAAGCACTCTTTC+AGG - chr4.1:4190634-4190653 None:intergenic 45.0%
CAGGATCTGTGTAACTTCCA+TGG - chr4.1:4188024-4188043 None:intergenic 45.0%
CCAGACTCTTGAGAATCAGA+AGG + chr4.1:4189690-4189709 MS.gene048965:CDS 45.0%
CCTTCTGATTCTCAAGAGTC+TGG - chr4.1:4189693-4189712 None:intergenic 45.0%
CTACCAGGTTTGTGCTATCA+CGG + chr4.1:4189999-4190018 MS.gene048965:CDS 45.0%
CTTCAGTTCAGGAGAAAGAG+TGG - chr4.1:4188699-4188718 None:intergenic 45.0%
CTTCATATGCTGCTGTTCTG+AGG - chr4.1:4189585-4189604 None:intergenic 45.0%
CTTGCAAGCAACCACATAGA+AGG - chr4.1:4189750-4189769 None:intergenic 45.0%
GAAGATCAAGATCAGGACGA+AGG + chr4.1:4189016-4189035 MS.gene048965:CDS 45.0%
GAAGCTGCAACTTACGCATT+TGG + chr4.1:4189169-4189188 MS.gene048965:CDS 45.0%
GATACTCACTGCAGTTGTTC+AGG + chr4.1:4188538-4188557 MS.gene048965:CDS 45.0%
GATCCTGTTCTACCACATCT+GGG - chr4.1:4188508-4188527 None:intergenic 45.0%
GATCGGCAGAATGAGTTACA+GGG + chr4.1:4189724-4189743 MS.gene048965:CDS 45.0%
GCATACTCAGGTATCTTCCA+AGG + chr4.1:4190318-4190337 MS.gene048965:CDS 45.0%
GGACCCAAACAATCATGTGA+AGG + chr4.1:4189276-4189295 MS.gene048965:CDS 45.0%
GGAGCACAGTAATGATCTGT+TGG - chr4.1:4189387-4189406 None:intergenic 45.0%
GGGTGATCTTGGTCAAATTG+GGG + chr4.1:4187538-4187557 MS.gene048965:intron 45.0%
GTAATACAAGGACACGGAAC+AGG - chr4.1:4187751-4187770 None:intergenic 45.0%
GTAGTCACGCTCCATATCAT+TGG - chr4.1:4188654-4188673 None:intergenic 45.0%
GTCAAATTGGGGTTTATGGG+TGG + chr4.1:4187521-4187540 MS.gene048965:intron 45.0%
GTGTTGTAGGTGATGTATGC+AGG + chr4.1:4190025-4190044 MS.gene048965:CDS 45.0%
GTTATGAGGATGCTGGATCT+GGG + chr4.1:4189476-4189495 MS.gene048965:CDS 45.0%
GTTGTGACCAAGACAGCAAT+TGG + chr4.1:4190530-4190549 MS.gene048965:CDS 45.0%
TCAAGCAGGGGATTCATATG+GGG - chr4.1:4186474-4186493 None:intergenic 45.0%
TCAATTGCCTGAAGTGCAAC+AGG - chr4.1:4188842-4188861 None:intergenic 45.0%
TCCAAGAATTGCAGTACGTG+TGG - chr4.1:4190387-4190406 None:intergenic 45.0%
TCCACACGTACTGCAATTCT+TGG + chr4.1:4190383-4190402 MS.gene048965:CDS 45.0%
TCCAGCATCCTCATAACCTT+GGG - chr4.1:4189473-4189492 None:intergenic 45.0%
TCCTGAAAGAAGGGAGTCAA+TGG - chr4.1:4189508-4189527 None:intergenic 45.0%
TCTCACTGTAACTCACAGAG+AGG + chr4.1:4189543-4189562 MS.gene048965:CDS 45.0%
TGAAGAAGTTTCCCCAGATG+TGG + chr4.1:4188493-4188512 MS.gene048965:CDS 45.0%
TGATCCTGTTCTACCACATC+TGG - chr4.1:4188509-4188528 None:intergenic 45.0%
TGATCGGCAGAATGAGTTAC+AGG + chr4.1:4189723-4189742 MS.gene048965:CDS 45.0%
TGTCCAGCAATCAGTTGCAT+AGG + chr4.1:4190109-4190128 MS.gene048965:CDS 45.0%
TTAAATGCCCAAGCAGTGGA+TGG + chr4.1:4188044-4188063 MS.gene048965:CDS 45.0%
TTACCAGTTGAGCGACCATT+GGG - chr4.1:4189648-4189667 None:intergenic 45.0%
TTCATCTTCCCTCACAGCTT+TGG - chr4.1:4188816-4188835 None:intergenic 45.0%
TTGGGGTTTATGGGTGATCT+TGG + chr4.1:4187527-4187546 MS.gene048965:intron 45.0%
! AAAAGCACGCGCAGAAAATG+TGG + chr4.1:4186493-4186512 MS.gene048965:intron 45.0%
! ACAGGCATTGTACAATGCAC+TGG + chr4.1:4188607-4188626 MS.gene048965:CDS 45.0%
! ACGTGCAGCTTTTGAATGCT+TGG + chr4.1:4188724-4188743 MS.gene048965:CDS 45.0%
! AGGCATTGTACAATGCACTG+GGG + chr4.1:4188609-4188628 MS.gene048965:CDS 45.0%
! ATGCTTTGGTGACATTGCCT+TGG + chr4.1:4190155-4190174 MS.gene048965:CDS 45.0%
! CAGGCATTGTACAATGCACT+GGG + chr4.1:4188608-4188627 MS.gene048965:CDS 45.0%
! GCGAACGAACGAGTTTTTGA+AGG - chr4.1:4186824-4186843 None:intergenic 45.0%
! TGTTCAAAGATGGCTGGCTA+TGG + chr4.1:4188250-4188269 MS.gene048965:CDS 45.0%
! TTGAGTTGCCACACAAGCAA+TGG + chr4.1:4188381-4188400 MS.gene048965:CDS 45.0%
!! AAGCAATGGCCTGAGTTGAT+AGG + chr4.1:4188395-4188414 MS.gene048965:CDS 45.0%
!! ATGGGTGGTGTTGGTCAAAT+TGG + chr4.1:4187564-4187583 MS.gene048965:intron 45.0%
!! CTACTCTGAAACCCTAGCAA+GGG - chr4.1:4186778-4186797 None:intergenic 45.0%
!! GCATTTGGCTCCATTTTGGA+AGG + chr4.1:4189184-4189203 MS.gene048965:CDS 45.0%
!! GGCCAGTGTTGGTCAAATTA+GGG + chr4.1:4187324-4187343 MS.gene048965:intron 45.0%
!! TCCATTGACTCCCTTCTTTC+AGG + chr4.1:4189504-4189523 MS.gene048965:CDS 45.0%
!! TGGCCAGTGTTGGTCAAATT+AGG + chr4.1:4187323-4187342 MS.gene048965:intron 45.0%
!! TGGGTGGTGTTGGTCAAATT+GGG + chr4.1:4187565-4187584 MS.gene048965:intron 45.0%
!! TTGGGGAACCTTTGAAACCT+TGG - chr4.1:4190338-4190357 None:intergenic 45.0%
AACTCAGGCCATTGCTTGTG+TGG - chr4.1:4188392-4188411 None:intergenic 50.0%
AAGACAGCAATTGGCGTGCT+TGG + chr4.1:4190539-4190558 MS.gene048965:CDS 50.0%
AAGCACGCCAATTGCTGTCT+TGG - chr4.1:4190540-4190559 None:intergenic 50.0%
AAGCAGTGGATGGAGCTGTA+AGG + chr4.1:4188054-4188073 MS.gene048965:CDS 50.0%
AAGTGCAACGGCTCATGAAG+AGG + chr4.1:4189870-4189889 MS.gene048965:CDS 50.0%
AATGTTGCTGAGAAGGCCTG+TGG + chr4.1:4189430-4189449 MS.gene048965:CDS 50.0%
ACACCACTGCATGGACTCTT+GGG + chr4.1:4189299-4189318 MS.gene048965:CDS 50.0%
AGATACCTGAGTATGCCTCG+AGG - chr4.1:4190314-4190333 None:intergenic 50.0%
AGGGGATGGACCTTCCAAAA+TGG - chr4.1:4189197-4189216 None:intergenic 50.0%
AGGTGATGTATGCAGGGCTT+TGG + chr4.1:4190032-4190051 MS.gene048965:CDS 50.0%
ATCTGCAGAATGGGCCAAGT+TGG + chr4.1:4190673-4190692 MS.gene048965:CDS 50.0%
ATGCGGTTTATGGCCAGTGT+TGG + chr4.1:4187313-4187332 MS.gene048965:intron 50.0%
ATGTGAAGGACACCACTGCA+TGG + chr4.1:4189290-4189309 MS.gene048965:CDS 50.0%
ATGTTGCTGAGAAGGCCTGT+GGG + chr4.1:4189431-4189450 MS.gene048965:CDS 50.0%
CAAGCAACTCTCGAGACACT+TGG + chr4.1:4188461-4188480 MS.gene048965:CDS 50.0%
CACTAACACACGTAGCGACA+CGG - chr4.1:4186678-4186697 None:intergenic 50.0%
CAGGCCTTCTCAGCAACATT+TGG - chr4.1:4189430-4189449 None:intergenic 50.0%
CAGGTTTGTGCTATCACGGT+GGG + chr4.1:4190003-4190022 MS.gene048965:CDS 50.0%
CATCACTGCCAAAGCTGTGA+GGG + chr4.1:4188805-4188824 MS.gene048965:CDS 50.0%
CATCAGGAGCTGTGTCTTTG+GGG - chr4.1:4190355-4190374 None:intergenic 50.0%
CATCGTCAGCCCCATTAGTA+TGG - chr4.1:4190254-4190273 None:intergenic 50.0%
CCACTGCTTGGGCATTTAAC+AGG - chr4.1:4188043-4188062 None:intergenic 50.0%
CCATCAGGAGCTGTGTCTTT+GGG - chr4.1:4190356-4190375 None:intergenic 50.0%
CCTGTTAAATGCCCAAGCAG+TGG + chr4.1:4188040-4188059 MS.gene048965:CDS 50.0%
GAAGAGGCAATGCTTGCCAT+TGG + chr4.1:4189886-4189905 MS.gene048965:CDS 50.0%
GACACCCCCATCATCAATCA+AGG + chr4.1:4189355-4189374 MS.gene048965:CDS 50.0%
GAGCTCTCTGCCCATACTAA+TGG + chr4.1:4190240-4190259 MS.gene048965:CDS 50.0%
GAGGAAATAAAGAGCCCCAC+AGG - chr4.1:4189449-4189468 None:intergenic 50.0%
GAGTTACAGGGCCTTCTATG+TGG + chr4.1:4189736-4189755 MS.gene048965:CDS 50.0%
GATACATTGGGTAGTGCTGC+TGG + chr4.1:4190572-4190591 MS.gene048965:CDS 50.0%
GATGCAGTTGATCGAGCATC+AGG - chr4.1:4188335-4188354 None:intergenic 50.0%
GCTCTCTGCCCATACTAATG+GGG + chr4.1:4190242-4190261 MS.gene048965:CDS 50.0%
GGTGACATTGCCTTGGCAAT+TGG + chr4.1:4190162-4190181 MS.gene048965:CDS 50.0%
GGTTATGAGGATGCTGGATC+TGG + chr4.1:4189475-4189494 MS.gene048965:CDS 50.0%
GTAACTCACAGAGAGGACAC+CGG + chr4.1:4189550-4189569 MS.gene048965:CDS 50.0%
GTTACCAGTTGAGCGACCAT+TGG - chr4.1:4189649-4189668 None:intergenic 50.0%
GTTGATCGAGCATCAGGAGA+TGG - chr4.1:4188329-4188348 None:intergenic 50.0%
TAACGAACTCGGATCAACGG+TGG - chr4.1:4186961-4186980 None:intergenic 50.0%
TACAGCTCCATCCACTGCTT+GGG - chr4.1:4188054-4188073 None:intergenic 50.0%
TACCAGTTGAGCGACCATTG+GGG - chr4.1:4189647-4189666 None:intergenic 50.0%
TGAAGAGCCTGTTGCACTTC+AGG + chr4.1:4188832-4188851 MS.gene048965:CDS 50.0%
TTACAGCTCCATCCACTGCT+TGG - chr4.1:4188055-4188074 None:intergenic 50.0%
TTCCCCAGATGTGGTAGAAC+AGG + chr4.1:4188502-4188521 MS.gene048965:CDS 50.0%
TTGGGGTTTATGGGTGGTGT+TGG + chr4.1:4187555-4187574 MS.gene048965:intron 50.0%
TTTCCTCGCCCAAGGTTATG+AGG + chr4.1:4189462-4189481 MS.gene048965:CDS 50.0%
! AATGCTTGCCATTGGTGCCT+TGG + chr4.1:4189894-4189913 MS.gene048965:CDS 50.0%
! GCTCTTTATTTCCTCGCCCA+AGG + chr4.1:4189454-4189473 MS.gene048965:CDS 50.0%
! GTTTTTGCACGGCTCAACTC+TGG + chr4.1:4189333-4189352 MS.gene048965:CDS 50.0%
! TGATGTATGCAGGGCTTTGG+AGG + chr4.1:4190035-4190054 MS.gene048965:CDS 50.0%
!! ATATGCTGCTGTTCTGAGGC+GGG - chr4.1:4189581-4189600 None:intergenic 50.0%
!! CATATGCTGCTGTTCTGAGG+CGG - chr4.1:4189582-4189601 None:intergenic 50.0%
!! GCTACTCTGAAACCCTAGCA+AGG - chr4.1:4186779-4186798 None:intergenic 50.0%
!! GGATTGGTTGCACGAACAGT+TGG + chr4.1:4189076-4189095 MS.gene048965:CDS 50.0%
!! GGGTGGTGTTGGTCAAATTG+GGG + chr4.1:4187566-4187585 MS.gene048965:intron 50.0%
!! TGTTAGGCTTGCTGCCATAC+AGG + chr4.1:4188589-4188608 MS.gene048965:CDS 50.0%
AACTGGGGAGATTCTGCTCC+TGG - chr4.1:4188109-4188128 None:intergenic 55.0%
AAGATCAGGACGAAGGGGCT+TGG + chr4.1:4189023-4189042 MS.gene048965:CDS 55.0%
ACGAGAAGCCTCCAGAGAGT+AGG + chr4.1:4188162-4188181 MS.gene048965:CDS 55.0%
AGAAGCCTCCAGAGAGTAGG+AGG + chr4.1:4188165-4188184 MS.gene048965:CDS 55.0%
AGGGGCAGGAAGCTGATGAA+CGG - chr4.1:4188435-4188454 None:intergenic 55.0%
AGGGGCTTGGAACATTGCCA+TGG + chr4.1:4189036-4189055 MS.gene048965:CDS 55.0%
CATCCTCATAACCTTGGGCG+AGG - chr4.1:4189468-4189487 None:intergenic 55.0%
CCACACTCTCTCCCTTGCTA+GGG + chr4.1:4186764-4186783 MS.gene048965:intron 55.0%
CCACCGTGATAGCACAAACC+TGG - chr4.1:4190005-4190024 None:intergenic 55.0%
CCAGGTTTGTGCTATCACGG+TGG + chr4.1:4190002-4190021 MS.gene048965:CDS 55.0%
CCATCACTGCCAAAGCTGTG+AGG + chr4.1:4188804-4188823 MS.gene048965:CDS 55.0%
CCCAAAGACACAGCTCCTGA+TGG + chr4.1:4190353-4190372 MS.gene048965:CDS 55.0%
CGAGAGTTGCTTGCCTGGTA+GGG - chr4.1:4188454-4188473 None:intergenic 55.0%
CGTGTGGAGCATAAGCCATC+AGG - chr4.1:4190371-4190390 None:intergenic 55.0%
CTGTTCGTGCAACCAATCCC+AGG - chr4.1:4189075-4189094 None:intergenic 55.0%
GACACCACTGCATGGACTCT+TGG + chr4.1:4189298-4189317 MS.gene048965:CDS 55.0%
GAGAGTTGCTTGCCTGGTAG+GGG - chr4.1:4188453-4188472 None:intergenic 55.0%
GCACGTCGGATCTTCAGTTC+AGG - chr4.1:4188710-4188729 None:intergenic 55.0%
GCCATCAGGAGCTGTGTCTT+TGG - chr4.1:4190357-4190376 None:intergenic 55.0%
GCCCAAGGTTATGAGGATGC+TGG + chr4.1:4189469-4189488 MS.gene048965:CDS 55.0%
GCTTGGAACATTGCCATGGC+TGG + chr4.1:4189040-4189059 MS.gene048965:CDS 55.0%
GGAATCCTCGAGGCATACTC+AGG + chr4.1:4190306-4190325 MS.gene048965:CDS 55.0%
GGCACAAGTTTCTCAGGGGA+TGG - chr4.1:4189211-4189230 None:intergenic 55.0%
TACTCGACCGAGTGCCAACT+TGG - chr4.1:4190690-4190709 None:intergenic 55.0%
TCGAGAGTTGCTTGCCTGGT+AGG - chr4.1:4188455-4188474 None:intergenic 55.0%
TGGAACATTGCCATGGCTGG+AGG + chr4.1:4189043-4189062 MS.gene048965:CDS 55.0%
TGTCTCGAGAGTTGCTTGCC+TGG - chr4.1:4188459-4188478 None:intergenic 55.0%
TGTTGCTGAGAAGGCCTGTG+GGG + chr4.1:4189432-4189451 MS.gene048965:CDS 55.0%
! CAATGCACTGGGGTTTGCTC+AGG + chr4.1:4188619-4188638 MS.gene048965:CDS 55.0%
! CCTAGCAAGGGAGAGAGTGT+GGG - chr4.1:4186766-4186785 None:intergenic 55.0%
! CCTCACAGCTTTGGCAGTGA+TGG - chr4.1:4188807-4188826 None:intergenic 55.0%
! CGTGTCGCTACGTGTGTTAG+TGG + chr4.1:4186676-4186695 MS.gene048965:intron 55.0%
! GAATGGGCCAAGTTGGCACT+CGG + chr4.1:4190680-4190699 MS.gene048965:CDS 55.0%
! GCTATCACGGTGGGTGTTGT+AGG + chr4.1:4190012-4190031 MS.gene048965:CDS 55.0%
! TGGTGATGATATCGTGCCGC+TGG + chr4.1:4189096-4189115 MS.gene048965:CDS 55.0%
!! AAACTCAGTGCCGGTCGCAT+AGG - chr4.1:4189920-4189939 None:intergenic 55.0%
!! ATGGCTGGAGGTACTTGCCT+GGG + chr4.1:4189055-4189074 MS.gene048965:CDS 55.0%
!! CTGCGCGTGCTTTTCAAGCA+GGG - chr4.1:4186487-4186506 None:intergenic 55.0%
!! TCAGCAGCACTCTGGAGCAT+AGG - chr4.1:4190222-4190241 None:intergenic 55.0%
!! TCTGCGCGTGCTTTTCAAGC+AGG - chr4.1:4186488-4186507 None:intergenic 55.0%
!! TGCGCGTGCTTTTCAAGCAG+GGG - chr4.1:4186486-4186505 None:intergenic 55.0%
!! TGGAGGTACTTGCCTGGGAT+TGG + chr4.1:4189060-4189079 MS.gene048965:CDS 55.0%
ATCAGCTTCCTGCCCCTACC+AGG + chr4.1:4188438-4188457 MS.gene048965:CDS 60.0%
CAGAGAGCTCAGCAGCACTC+TGG - chr4.1:4190230-4190249 None:intergenic 60.0%
CAGGCAAGTACCTCCAGCCA+TGG - chr4.1:4189056-4189075 None:intergenic 60.0%
CCAGAGAGTAGGAGGCTAGC+AGG + chr4.1:4188173-4188192 MS.gene048965:CDS 60.0%
CCCACACTCTCTCCCTTGCT+AGG + chr4.1:4186763-4186782 MS.gene048965:intron 60.0%
CCCTAGCAAGGGAGAGAGTG+TGG - chr4.1:4186767-4186786 None:intergenic 60.0%
TCGCCCAAGAGTCCATGCAG+TGG - chr4.1:4189305-4189324 None:intergenic 60.0%
TGCCCCAATGGTCGCTCAAC+TGG + chr4.1:4189642-4189661 MS.gene048965:CDS 60.0%
! CCTGCTAGCCTCCTACTCTC+TGG - chr4.1:4188176-4188195 None:intergenic 60.0%
! CGCATAGGCCAAGGCACCAA+TGG - chr4.1:4189905-4189924 None:intergenic 60.0%
! GCTAGCCTCCTACTCTCTGG+AGG - chr4.1:4188173-4188192 None:intergenic 60.0%
!! CATGGCTGGAGGTACTTGCC+TGG + chr4.1:4189054-4189073 MS.gene048965:CDS 60.0%
!! TGTTCTGAGGCGGGACTCTC+CGG - chr4.1:4189572-4189591 None:intergenic 60.0%
GGTGCCTTGGCCTATGCGAC+CGG + chr4.1:4189907-4189926 MS.gene048965:CDS 65.0%
GTTGCTTGCCTGGTAGGGGC+AGG - chr4.1:4188449-4188468 None:intergenic 65.0%
!! AGTGCCGGTCGCATAGGCCA+AGG - chr4.1:4189914-4189933 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 4186298 4190715 4186298 ID=MS.gene048965
chr4.1 mRNA 4186298 4190715 4186298 ID=MS.gene048965.t1;Parent=MS.gene048965
chr4.1 exon 4186298 4186305 4186298 ID=MS.gene048965.t1.exon1;Parent=MS.gene048965.t1
chr4.1 CDS 4186298 4186305 4186298 ID=cds.MS.gene048965.t1;Parent=MS.gene048965.t1
chr4.1 exon 4186793 4186877 4186793 ID=MS.gene048965.t1.exon2;Parent=MS.gene048965.t1
chr4.1 CDS 4186793 4186877 4186793 ID=cds.MS.gene048965.t1;Parent=MS.gene048965.t1
chr4.1 exon 4188011 4190430 4188011 ID=MS.gene048965.t1.exon3;Parent=MS.gene048965.t1
chr4.1 CDS 4188011 4190430 4188011 ID=cds.MS.gene048965.t1;Parent=MS.gene048965.t1
chr4.1 exon 4190523 4190715 4190523 ID=MS.gene048965.t1.exon4;Parent=MS.gene048965.t1
chr4.1 CDS 4190523 4190715 4190523 ID=cds.MS.gene048965.t1;Parent=MS.gene048965.t1
Gene Sequence

>MS.gene048965

ATGGCAGTGTATTCACATTATATCATTTTTTTAGTATAGTTCATTCATAGTATATCATATCATTTCCTTCTCCTTAAAAATAAAAAGCATATCTTGTCATATGATCATTTGTTTTGAGAGAATATTGTCATATGATCATATTTTGTAACCAAAAAGAGGATCATATATTTGCACCCCATATGAATCCCCTGCTTGAAAAGCACGCGCAGAAAATGTGGTGTGCACTACTTTACAGAAGAGAGAAAAAACAACTGGGCTTAGGCCCTATTTAATTAAATTAAATTTAATGAAAAACAATTCAAAATGAAAATAAAGCCGTTGATGAGATAATCATAGGGCGGAGATTAACAATATTTGAATGAACGGTAGAGATTGATCCGTGTCGCTACGTGTGTTAGTGGTAGAAGCGAATATAAAAAAGGGGAAAAGAGAAACAAAAATTTAACATTGGCTTCTCTGCTTTTTCCCACACTCTCTCCCTTGCTAGGGTTTCAGAGTAGCCGCGCTTCACTCACTTTTCACTCCTTCAAAAACTCGTTCGTTCGCTCGTTCTATCGCCGATTTAACTCGCTTTCTCGCTGTAAGTTTCTCTTCCTTTCGTTGATTTTCTCTTATCGTATGCTTTGATTTGCTTATTTTTTTCTTCATTATTGCTTTGTTCCACCGTTGATCCGAGTTCGTTATTTATCTAGGGTTTGATATTTTTAGTTTCGTAAATTAATTTGATTTGTTTATTTCTGATTACAATTAGATTCAGTTCATTTCGTTAACTATCATTTTTAGGGTTTTTAATTAGTATTTTTATCTAATCGGTACTGTTTAGTATTACTCATTATTGATGCTCGCTGTTTGTTTGGTTGCTGATGAAATGTTGAAAATTGATTTTGACCTAATCCCCTTGTATTTTTTTGAGGAATGTTTTGTGCTCTATTTTGATTTTGATTATGGGGTTAATATAAAGATTGTTTCTTTCATTTATTATATTCTTATGGATCTGTTGTCTTTATATTGTGGTATGCGGTTTATGGCCAGTGTTGGTCAAATTAGGGTTTATGATTGGTTTTGGTCTAATTGGGGTTTATGATTGGTGTTGGTCAAATTGGGGTTTATCAGTGGTATATGTCAAATTATCATTCTTATTGAAATGGCTGTGTTTTTTTTTTTAGTTTATTGTTGAGATATCATTGGTTTTATATTCAAATTGGGGTTTATGATTAATGTTGGTCAAATTGGGGTTTATGGGTGATCTTGGTCAAATTGGGGTTTATGGGTGGTGTTGGTCAAATTGGGGATTTTGAGTGATGTTGGTAAAATTGGGGTTTACGTGTCTTAGTCAAATTATCATTCTTATTGAAATGCCTGCTTTTTTTTTTTTTAATTATTGTTGAGATATGATTGAGTTTATATCTTGAATCATTTGTGGTTTTAACATTTTATTTTCTATATTTCCCCTGTTCCGTGTCCTTGTATTACCCATTATTAGTGCGTGCGTGTGTGTGTGTATTTTCCTGTTATGGGTCCTTGTTTGTGAATATGGGTTGTTTATCTTCCCCCTTTTTGTTGATTTTTTTTAATGTATTGTTATGCGTTTAAGTTGTAGTTTGGGAGTTTGCAGTAACTTTATTACGTACCTAACATGTTTATGTTGCTAGTTTATGACTGTTTTTTCGTTTTTGTGCCCTTTATTTATGCTATTTGTTCTGTATGTTTTAGGTTAAGATGGCCATGGAAGTTACACAGATCCTGTTAAATGCCCAAGCAGTGGATGGAGCTGTAAGGAAACAAGCTGAAGACAACTTGAAGCAATTCCAGGAGCAGAATCTCCCCAGTTTCTTATTTTCTCTTGCTGGAGAATTGGCAAATGACGAGAAGCCTCCAGAGAGTAGGAGGCTAGCAGGATTAATTCTCAAGAATGCTCTGGATTCAAAAGAACAACACAAAAAGATAGAATTTGTTCAAAGATGGCTGGCTATGGATCAAGCTTATAAAGCGCAAATTAAAGCATTATTGTTGAGGACATTGTCTTCTCCATCTCCTGATGCTCGATCAACTGCATCTCAAGTTGTAGCAAAAGTAGCTGGCATTGAGTTGCCACACAAGCAATGGCCTGAGTTGATAGGATCTCTCTTGTCAACCGTTCATCAGCTTCCTGCCCCTACCAGGCAAGCAACTCTCGAGACACTTGGATACATTTGTGAAGAAGTTTCCCCAGATGTGGTAGAACAGGATCATGTAAATAAGATACTCACTGCAGTTGTTCAGGGAATGAATTCTTCAGAAGAAAACAATGATGTTAGGCTTGCTGCCATACAGGCATTGTACAATGCACTGGGGTTTGCTCAGGCAAATTTTTCCAATGATATGGAGCGTGACTACATAATGAGAATTGTTTGTGAAGCCACTCTTTCTCCTGAACTGAAGATCCGACGTGCAGCTTTTGAATGCTTGGTTGCTATTTCTTCTACATATTATGAAAAGTTGGCTCAATATATGCAAGATATTTTCACCATCACTGCCAAAGCTGTGAGGGAAGATGAAGAGCCTGTTGCACTTCAGGCAATTGAATTTTGGAGTTCAATCTGTGATGAAGAAATTGATATAATAGAAGAATATGGTGGTGAGTTTAGCGGTGATTCAGATGTTCCCTGCTTTTATTTTATAAAGCAGGCACTTCCATTTCTTGTTCCCATGTTATTGGAGACACTGCTAAAACAAGAAGAAGATCAAGATCAGGACGAAGGGGCTTGGAACATTGCCATGGCTGGAGGTACTTGCCTGGGATTGGTTGCACGAACAGTTGGTGATGATATCGTGCCGCTGGTCATGCCATTTATTGAAGAGAATATAACTAAACAAGATTGGAGGCAAAGGGAAGCTGCAACTTACGCATTTGGCTCCATTTTGGAAGGTCCATCCCCTGAGAAACTTGTGCCACTTGTGAATATGGCTTTGAGCTTCATGCTTAATGCACTGACAAAGGACCCAAACAATCATGTGAAGGACACCACTGCATGGACTCTTGGGCGAATGTTCGAGTTTTTGCACGGCTCAACTCTGGACACCCCCATCATCAATCAAGGAAACTGCCAACAGATCATTACTGTGCTCCTTCAGAGTATGAAAGATGTTCCAAATGTTGCTGAGAAGGCCTGTGGGGCTCTTTATTTCCTCGCCCAAGGTTATGAGGATGCTGGATCTGGGTCCTCTCCATTGACTCCCTTCTTTCAGGAAATTGTTCAGTCTCTTCTCACTGTAACTCACAGAGAGGACACCGGAGAGTCCCGCCTCAGAACAGCAGCATATGAAGCTCTGAATGAAGTAGTGAGGTGTTCTAATGATGATACTGCCCCAATGGTCGCTCAACTGGTAACTGTCATCATGATGGAGCTTCACCAGACTCTTGAGAATCAGAAGGTCTCATCTGATGATCGGCAGAATGAGTTACAGGGCCTTCTATGTGGTTGCTTGCAAGTCATTATTCAGAAGTTAGGAGCCTCTGAACCAACGAAACATCATTTAATGCAGTATGCTGATCAAATTATGGGTTTGTTCTTGAGAGTATTTGCTTCTCGAAGTGCAACGGCTCATGAAGAGGCAATGCTTGCCATTGGTGCCTTGGCCTATGCGACCGGCACTGAGTTTCTTAAATACATGCAAGAATTTTACAGGTATATGGAGATGGGTCTCCAAAATTTTGAGGACTACCAGGTTTGTGCTATCACGGTGGGTGTTGTAGGTGATGTATGCAGGGCTTTGGAGGAGAAAGTACTGCCTTATTGTGATGGGATAATGACCCAACTCCTTAAGGATTTGTCCAGCAATCAGTTGCATAGGTCTGTAAAGCCTCCGATTTTTTCATGCTTTGGTGACATTGCCTTGGCAATTGGAGAGAACTTTGAAAAGTATTTGTTATATGCTATGCCTATGCTCCAGAGTGCTGCTGAGCTCTCTGCCCATACTAATGGGGCTGACGATGATATGATTGAGTACACAAACACTTTAAGAAATGGAATCCTCGAGGCATACTCAGGTATCTTCCAAGGTTTCAAAGGTTCCCCAAAGACACAGCTCCTGATGGCTTATGCTCCACACGTACTGCAATTCTTGGACAGTTTGTATAATGAGAAGGACATGTAAGTATATTTCTGTATATTCAAATCTTAGTAGCGAGTTTTTCTTCTATGAATTTTTAATTTTGATTTGTTTGCATCAATTGTTTTTTTAGGGATGATGTTGTGACCAAGACAGCAATTGGCGTGCTTGGAGATTTAGCTGATACATTGGGTAGTGCTGCTGGCCCCTTGATTCAGCAATCCGTATCTAGCAAAGACTTCCTGAAAGAGTGCTTATCCTCTGATGATCCTTTGATCAAGGAATCTGCAGAATGGGCCAAGTTGGCACTCGGTCGAGTATTTTGA
Protein sequence

>MS.gene048965.t1

MAVVAALHSLFTPSKTRSFARSIADLTRFLAVKMAMEVTQILLNAQAVDGAVRKQAEDNLKQFQEQNLPSFLFSLAGELANDEKPPESRRLAGLILKNALDSKEQHKKIEFVQRWLAMDQAYKAQIKALLLRTLSSPSPDARSTASQVVAKVAGIELPHKQWPELIGSLLSTVHQLPAPTRQATLETLGYICEEVSPDVVEQDHVNKILTAVVQGMNSSEENNDVRLAAIQALYNALGFAQANFSNDMERDYIMRIVCEATLSPELKIRRAAFECLVAISSTYYEKLAQYMQDIFTITAKAVREDEEPVALQAIEFWSSICDEEIDIIEEYGGEFSGDSDVPCFYFIKQALPFLVPMLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFIEENITKQDWRQREAATYAFGSILEGPSPEKLVPLVNMALSFMLNALTKDPNNHVKDTTAWTLGRMFEFLHGSTLDTPIINQGNCQQIITVLLQSMKDVPNVAEKACGALYFLAQGYEDAGSGSSPLTPFFQEIVQSLLTVTHREDTGESRLRTAAYEALNEVVRCSNDDTAPMVAQLVTVIMMELHQTLENQKVSSDDRQNELQGLLCGCLQVIIQKLGASEPTKHHLMQYADQIMGLFLRVFASRSATAHEEAMLAIGALAYATGTEFLKYMQEFYRYMEMGLQNFEDYQVCAITVGVVGDVCRALEEKVLPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLLYAMPMLQSAAELSAHTNGADDDMIEYTNTLRNGILEAYSGIFQGFKGSPKTQLLMAYAPHVLQFLDSLYNEKDMDDVVTKTAIGVLGDLADTLGSAAGPLIQQSVSSKDFLKECLSSDDPLIKESAEWAKLALGRVF