Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049002.t1 | XP_003630614.1 | 97.5 | 285 | 7 | 0 | 1 | 285 | 1 | 285 | 8.40E-150 | 539.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049002.t1 | Q9CAF5 | 71.9 | 249 | 70 | 0 | 34 | 282 | 89 | 337 | 3.3e-102 | 372.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049002.t1 | G7LIW2 | 97.5 | 285 | 7 | 0 | 1 | 285 | 1 | 285 | 6.1e-150 | 539.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06894 | MS.gene049002 | PPI |
| MS.gene049002 | MS.gene06683 | PPI |
| MS.gene049002 | MS.gene057128 | PPI |
| MS.gene013566 | MS.gene049002 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049002.t1 | MTR_8g101390 | 97.544 | 285 | 7 | 0 | 1 | 285 | 1 | 285 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049002.t1 | AT3G10670 | 71.888 | 249 | 70 | 0 | 34 | 282 | 89 | 337 | 2.76e-133 | 381 |
| MS.gene049002.t1 | AT5G06530 | 29.817 | 218 | 132 | 6 | 27 | 230 | 147 | 357 | 6.66e-12 | 66.2 |
| MS.gene049002.t1 | AT5G06530 | 29.358 | 218 | 133 | 6 | 27 | 230 | 147 | 357 | 6.79e-12 | 66.2 |
| MS.gene049002.t1 | AT5G06530 | 29.358 | 218 | 133 | 6 | 27 | 230 | 147 | 357 | 6.79e-12 | 66.2 |
Find 72 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCATTGGATTCAACGATTT+TGG | 0.194740 | 4.1:-3737991 | None:intergenic |
| CAATCACCTGTTGCAATTCC+TGG | 0.224835 | 4.1:+3738224 | MS.gene049002:CDS |
| CCTTCAAGGGCTCTTTCTTC+AGG | 0.248911 | 4.1:-3738185 | None:intergenic |
| GATCTTGCAACTTGCAGTTT+TGG | 0.260095 | 4.1:+3739037 | MS.gene049002:CDS |
| AGGGGAAAATTTGCTTGAAA+TGG | 0.308468 | 4.1:+3738160 | MS.gene049002:CDS |
| AAATGATCAATTTCTTGTTA+TGG | 0.315799 | 4.1:+3738253 | MS.gene049002:CDS |
| ACCTCAAGGGGTCCAAGTTC+AGG | 0.361866 | 4.1:-3738308 | None:intergenic |
| TTGCGGCGAGTGTGTGATTT+GGG | 0.362619 | 4.1:-3737906 | None:intergenic |
| ATTAACGCCGCGGAGAATTT+CGG | 0.363663 | 4.1:-3738012 | None:intergenic |
| CCGCAAATTCGCCTGCTTTG+CGG | 0.385979 | 4.1:+3737923 | MS.gene049002:CDS |
| GGAGAAGAACGGAATTGAAA+TGG | 0.406711 | 4.1:-3737885 | None:intergenic |
| TTTGCGGCGAGTGTGTGATT+TGG | 0.406874 | 4.1:-3737907 | None:intergenic |
| GATTGGATGTTGATGCGCTC+AGG | 0.409831 | 4.1:+3739096 | MS.gene049002:CDS |
| CCACTAGTAACTTCATAATC+TGG | 0.412502 | 4.1:-3738122 | None:intergenic |
| CTCGAAGATCGTTGACTTGG+AGG | 0.414656 | 4.1:-3737968 | None:intergenic |
| CACTTTCGCTAAGGTTCTTG+TGG | 0.418543 | 4.1:+3738094 | MS.gene049002:CDS |
| CCGCAAAGCAGGCGAATTTG+CGG | 0.425082 | 4.1:-3737923 | None:intergenic |
| AAACTTGGTCTTCCTGAACT+TGG | 0.426220 | 4.1:+3738296 | MS.gene049002:CDS |
| GGTGCTCGCCGCCGCAAAGC+AGG | 0.429445 | 4.1:-3737934 | None:intergenic |
| ACCCTCCCATGTCCATGTTA+TGG | 0.431294 | 4.1:+3739208 | MS.gene049002:CDS |
| ACATTTCTATTGAGAAAGTC+AGG | 0.433555 | 4.1:-3738975 | None:intergenic |
| AGGCGAAATTCACGCTATCA+TGG | 0.454010 | 4.1:+3738049 | MS.gene049002:CDS |
| AACTCATGAAAAGACCTTCA+AGG | 0.456874 | 4.1:-3738199 | None:intergenic |
| AATGTCAACGAAGGGTTTAG+TGG | 0.459977 | 4.1:+3738993 | MS.gene049002:CDS |
| ACTTTCGCTAAGGTTCTTGT+GGG | 0.463802 | 4.1:+3738095 | MS.gene049002:CDS |
| AAGGACAGGCGACCTATCTA+TGG | 0.465705 | 4.1:+3740774 | MS.gene049002:CDS |
| GAAACACCAGGAATTGCAAC+AGG | 0.465860 | 4.1:-3738230 | None:intergenic |
| ATCATCAACAGAGAATTCTC+TGG | 0.472195 | 4.1:-3739152 | None:intergenic |
| GGATGAAATTGATTCGGGAT+TGG | 0.478013 | 4.1:+3739079 | MS.gene049002:CDS |
| CCTGAAGAAAGAGCCCTTGA+AGG | 0.481223 | 4.1:+3738185 | MS.gene049002:CDS |
| TGAGGCAGATGGATATGAAC+TGG | 0.490578 | 4.1:+3740807 | MS.gene049002:CDS |
| TTGTTATGGCTTATAATGCT+CGG | 0.498223 | 4.1:+3738267 | MS.gene049002:CDS |
| GCCGCGGAGAATTTCGGCAT+TGG | 0.498807 | 4.1:-3738006 | None:intergenic |
| TCCTGAACTTGGACCCCTTG+AGG | 0.506534 | 4.1:+3738307 | MS.gene049002:CDS |
| TGGCTCGAAGATCGTTGACT+TGG | 0.513953 | 4.1:-3737971 | None:intergenic |
| CAAATTCGCCTGCTTTGCGG+CGG | 0.518445 | 4.1:+3737926 | MS.gene049002:CDS |
| TGTTGATGCGCTCAGGGATG+TGG | 0.524984 | 4.1:+3739103 | MS.gene049002:CDS |
| TGGTAAAAGCACTTTCGCTA+AGG | 0.531262 | 4.1:+3738085 | MS.gene049002:CDS |
| CTCAATAGAAATGTCAACGA+AGG | 0.535504 | 4.1:+3738984 | MS.gene049002:CDS |
| TCATCAACAGAGAATTCTCT+GGG | 0.539796 | 4.1:-3739151 | None:intergenic |
| CAATTGCATCTACCATAGAT+AGG | 0.540712 | 4.1:-3740786 | None:intergenic |
| AACGGAAGAATTGCAAGGAC+AGG | 0.551372 | 4.1:+3740760 | MS.gene049002:CDS |
| ACTCATGAAAAGACCTTCAA+GGG | 0.552552 | 4.1:-3738198 | None:intergenic |
| ATCTATGGTAGATGCAATTG+AGG | 0.552780 | 4.1:+3740789 | MS.gene049002:CDS |
| GACTTGGAGGAGGGGAACCT+CGG | 0.553003 | 4.1:-3737955 | None:intergenic |
| AAATGAATAATGAACCTCAA+GGG | 0.553158 | 4.1:-3738321 | None:intergenic |
| TCAATAGAAATGTCAACGAA+GGG | 0.553262 | 4.1:+3738985 | MS.gene049002:CDS |
| TGTTGATGATTACTCACTAT+CGG | 0.557313 | 4.1:+3739165 | MS.gene049002:CDS |
| GAAGATCGTTGACTTGGAGG+AGG | 0.561738 | 4.1:-3737965 | None:intergenic |
| GGCGAAATTCACGCTATCAT+GGG | 0.562057 | 4.1:+3738050 | MS.gene049002:CDS |
| AATTGATCATTTGAAACACC+AGG | 0.564779 | 4.1:-3738242 | None:intergenic |
| GTAGATGCAATTGAGGCAGA+TGG | 0.567240 | 4.1:+3740796 | MS.gene049002:CDS |
| AACTTACCATAACATGGACA+TGG | 0.572749 | 4.1:-3739214 | None:intergenic |
| AAGATCGTTGACTTGGAGGA+GGG | 0.579227 | 4.1:-3737964 | None:intergenic |
| ATTGGATGTTGATGCGCTCA+GGG | 0.588735 | 4.1:+3739097 | MS.gene049002:CDS |
| ACCATAACATGGACATGGGA+GGG | 0.592038 | 4.1:-3739209 | None:intergenic |
| CTTTGCGGCGGCGAGCACCG+AGG | 0.592980 | 4.1:+3737938 | MS.gene049002:CDS |
| AATGCTCGGAGAAAGAAACT+TGG | 0.594310 | 4.1:+3738281 | MS.gene049002:CDS |
| AGATCGTTGACTTGGAGGAG+GGG | 0.602773 | 4.1:-3737963 | None:intergenic |
| AATGAATAATGAACCTCAAG+GGG | 0.611116 | 4.1:-3738320 | None:intergenic |
| CCAGATTATGAAGTTACTAG+TGG | 0.621960 | 4.1:+3738122 | MS.gene049002:CDS |
| TACCATAACATGGACATGGG+AGG | 0.624925 | 4.1:-3739210 | None:intergenic |
| CTTCTAAACTATCAGGACAA+CGG | 0.631876 | 4.1:+3740742 | MS.gene049002:intron |
| ACTTACCATAACATGGACAT+GGG | 0.633255 | 4.1:-3739213 | None:intergenic |
| GCTCAGGGATGTGGCAAGTG+CGG | 0.643242 | 4.1:+3739112 | MS.gene049002:CDS |
| GTCAACGAAGGGTTTAGTGG+AGG | 0.664376 | 4.1:+3738996 | MS.gene049002:CDS |
| AGGACAACGGAAGAATTGCA+AGG | 0.667405 | 4.1:+3740755 | MS.gene049002:intron |
| TGTGTGATTTGGGAGAAGAA+CGG | 0.680750 | 4.1:-3737896 | None:intergenic |
| GTTAATCTCACTATCAACAG+AGG | 0.703089 | 4.1:+3738029 | MS.gene049002:CDS |
| TGATAGTGAGATTAACGCCG+CGG | 0.730942 | 4.1:-3738022 | None:intergenic |
| TCCAATGCCGAAATTCTCCG+CGG | 0.749562 | 4.1:+3738005 | MS.gene049002:CDS |
| CATCAACAGAGAATTCTCTG+GGG | 0.787412 | 4.1:-3739150 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATTTTTTATGGTAA+TGG | - | chr4.1:3739705-3739724 | None:intergenic | 10.0% |
| !! | CAAAAGAAAATTAGTAAAAA+AGG | - | chr4.1:3739570-3739589 | None:intergenic | 15.0% |
| !!! | AACTTCTTTGTTTTTTAAAA+CGG | + | chr4.1:3738641-3738660 | MS.gene049002:intron | 15.0% |
| !! | AAATGATCAATTTCTTGTTA+TGG | + | chr4.1:3738253-3738272 | MS.gene049002:CDS | 20.0% |
| !! | AACTATTTAGATAGATTTAG+AGG | + | chr4.1:3739872-3739891 | MS.gene049002:intron | 20.0% |
| !! | CTAAATCTATCTAAATAGTT+AGG | - | chr4.1:3739872-3739891 | None:intergenic | 20.0% |
| !! | TACATTATATGCTCATTTAT+TGG | + | chr4.1:3740402-3740421 | MS.gene049002:intron | 20.0% |
| !! | TGATAGTTTAGAAGAAAAAA+AGG | - | chr4.1:3740736-3740755 | None:intergenic | 20.0% |
| !!! | AATGTTTTGTTTAATGGTTT+AGG | + | chr4.1:3740204-3740223 | MS.gene049002:intron | 20.0% |
| !!! | ACCTTTTTAAATGAAATCAA+TGG | - | chr4.1:3740603-3740622 | None:intergenic | 20.0% |
| !!! | ATTTCATTTAAAAAGGTACA+TGG | + | chr4.1:3740606-3740625 | MS.gene049002:intron | 20.0% |
| !!! | GACTTATTTTAGCTTATTTA+TGG | + | chr4.1:3738507-3738526 | MS.gene049002:intron | 20.0% |
| !!! | TATTTTGGATGAAATTGATT+CGG | + | chr4.1:3739073-3739092 | MS.gene049002:CDS | 20.0% |
| !!! | TTTTTTTCTTCTAAACTATC+AGG | + | chr4.1:3740735-3740754 | MS.gene049002:intron | 20.0% |
| ! | AAATGAATAATGAACCTCAA+GGG | - | chr4.1:3738324-3738343 | None:intergenic | 25.0% |
| ! | AACTAAAATTGCAAGTTAGT+GGG | - | chr4.1:3740575-3740594 | None:intergenic | 25.0% |
| ! | AAGTCAGAAACCATAAAAAA+GGG | - | chr4.1:3738884-3738903 | None:intergenic | 25.0% |
| ! | AATGATTCTCCAAAATATCA+AGG | - | chr4.1:3738467-3738486 | None:intergenic | 25.0% |
| ! | ACGTTAAAATAAAATGTGAG+AGG | - | chr4.1:3740479-3740498 | None:intergenic | 25.0% |
| ! | ATGTATATACTTGCATCTTA+TGG | + | chr4.1:3739521-3739540 | MS.gene049002:intron | 25.0% |
| ! | TAAATGAATAATGAACCTCA+AGG | - | chr4.1:3738325-3738344 | None:intergenic | 25.0% |
| ! | TATGATAGTCTAATAGTTAG+AGG | + | chr4.1:3739825-3739844 | MS.gene049002:intron | 25.0% |
| ! | TGTATATACTTGCATCTTAT+GGG | + | chr4.1:3739522-3739541 | MS.gene049002:intron | 25.0% |
| ! | TTGAAATTGATGAATGCTTT+GGG | + | chr4.1:3739659-3739678 | MS.gene049002:intron | 25.0% |
| !! | ATTCTAAGTTTTCAACTTGA+AGG | + | chr4.1:3739264-3739283 | MS.gene049002:intron | 25.0% |
| !! | TTCTAAGTTTTCAACTTGAA+GGG | + | chr4.1:3739265-3739284 | MS.gene049002:intron | 25.0% |
| !! | TTTGAAATTGATGAATGCTT+TGG | + | chr4.1:3739658-3739677 | MS.gene049002:intron | 25.0% |
| !! | TTTTCATACACTGTCTATAA+CGG | - | chr4.1:3740673-3740692 | None:intergenic | 25.0% |
| !! | TTTTCTTAGAAAATGGATGT+AGG | + | chr4.1:3740444-3740463 | MS.gene049002:intron | 25.0% |
| !!! | AGATTGCTTTTCTTAGAAAA+TGG | + | chr4.1:3740437-3740456 | MS.gene049002:intron | 25.0% |
| !!! | ATTTTGGATGAAATTGATTC+GGG | + | chr4.1:3739074-3739093 | MS.gene049002:CDS | 25.0% |
| !!! | GCAGTGTTTTTCTTATTTAA+TGG | + | chr4.1:3738926-3738945 | MS.gene049002:intron | 25.0% |
| !!! | GCCATTGATTTCATTTAAAA+AGG | + | chr4.1:3740599-3740618 | MS.gene049002:intron | 25.0% |
| !!! | GTTCTGAATGTTTTGTTTAA+TGG | + | chr4.1:3740198-3740217 | MS.gene049002:intron | 25.0% |
| !!! | GTTTTTAACTTACCATAACA+TGG | - | chr4.1:3739223-3739242 | None:intergenic | 25.0% |
| AAAAGCAATCTTCTACCAAA+TGG | - | chr4.1:3740428-3740447 | None:intergenic | 30.0% | |
| AAAATAAGTCGATCCAATCA+AGG | - | chr4.1:3738497-3738516 | None:intergenic | 30.0% | |
| AAGCTATCTTGGATAACTTA+GGG | - | chr4.1:3738613-3738632 | None:intergenic | 30.0% | |
| AAGTGTGTGTTATGTAATAC+AGG | - | chr4.1:3740156-3740175 | None:intergenic | 30.0% | |
| AATGAATAATGAACCTCAAG+GGG | - | chr4.1:3738323-3738342 | None:intergenic | 30.0% | |
| ACATTTCTATTGAGAAAGTC+AGG | - | chr4.1:3738978-3738997 | None:intergenic | 30.0% | |
| AGAAAAGACCTACTTTCTTT+AGG | - | chr4.1:3740005-3740024 | None:intergenic | 30.0% | |
| AGAAAATGGATGTAGGTATT+AGG | + | chr4.1:3740451-3740470 | MS.gene049002:intron | 30.0% | |
| ATCATTGTTAAAGCCTTGAT+TGG | + | chr4.1:3738481-3738500 | MS.gene049002:intron | 30.0% | |
| CAAGTCAGAAACCATAAAAA+AGG | - | chr4.1:3738885-3738904 | None:intergenic | 30.0% | |
| CCAAAATATCAAGGATTATG+AGG | - | chr4.1:3738458-3738477 | None:intergenic | 30.0% | |
| CCAATACTATGAATTAACCA+CGG | - | chr4.1:3740129-3740148 | None:intergenic | 30.0% | |
| CTATTGTCTTCTCAACTATA+GGG | - | chr4.1:3739739-3739758 | None:intergenic | 30.0% | |
| CTTGATATTGTGGTAAAATG+TGG | + | chr4.1:3738363-3738382 | MS.gene049002:intron | 30.0% | |
| GAACTAAAATTGCAAGTTAG+TGG | - | chr4.1:3740576-3740595 | None:intergenic | 30.0% | |
| GCTATAACATTATCCTTTGA+GGG | - | chr4.1:3740049-3740068 | None:intergenic | 30.0% | |
| GTAGCTAGCAGAAAATATAT+GGG | - | chr4.1:3740257-3740276 | None:intergenic | 30.0% | |
| TAAGCTATCTTGGATAACTT+AGG | - | chr4.1:3738614-3738633 | None:intergenic | 30.0% | |
| TAATAGTTAGAGGTAGATCA+AGG | + | chr4.1:3739835-3739854 | MS.gene049002:intron | 30.0% | |
| TATCTAAATAGTTAGGCCAA+TGG | - | chr4.1:3739865-3739884 | None:intergenic | 30.0% | |
| TATTGTCTTCTCAACTATAG+GGG | - | chr4.1:3739738-3739757 | None:intergenic | 30.0% | |
| TCAATAGAAATGTCAACGAA+GGG | + | chr4.1:3738985-3739004 | MS.gene049002:CDS | 30.0% | |
| TCTATTGTCTTCTCAACTAT+AGG | - | chr4.1:3739740-3739759 | None:intergenic | 30.0% | |
| TGAGATGTATTCACATAATG+TGG | - | chr4.1:3740504-3740523 | None:intergenic | 30.0% | |
| TGCTATAACATTATCCTTTG+AGG | - | chr4.1:3740050-3740069 | None:intergenic | 30.0% | |
| TTCCATTTCCTAAAGAAAGT+AGG | + | chr4.1:3739994-3740013 | MS.gene049002:intron | 30.0% | |
| TTGTTATGGCTTATAATGCT+CGG | + | chr4.1:3738267-3738286 | MS.gene049002:CDS | 30.0% | |
| TTTAAATGAAATCAATGGCG+TGG | - | chr4.1:3740598-3740617 | None:intergenic | 30.0% | |
| TTTAAGAATAAAGGCAGCTT+TGG | + | chr4.1:3740295-3740314 | MS.gene049002:intron | 30.0% | |
| TTTCATACACTGTCTATAAC+GGG | - | chr4.1:3740672-3740691 | None:intergenic | 30.0% | |
| ! | AATTGATCATTTGAAACACC+AGG | - | chr4.1:3738245-3738264 | None:intergenic | 30.0% |
| ! | AATTTTATCACGACATCACT+TGG | - | chr4.1:3739640-3739659 | None:intergenic | 30.0% |
| ! | ATGAAGATTTTACAGCTTGT+TGG | + | chr4.1:3739487-3739506 | MS.gene049002:intron | 30.0% |
| ! | ATGATTTTCAATTTACTCCG+TGG | + | chr4.1:3740109-3740128 | MS.gene049002:intron | 30.0% |
| ! | CACATTTTACCACAATATCA+AGG | - | chr4.1:3738365-3738384 | None:intergenic | 30.0% |
| ! | CCTCATAATCCTTGATATTT+TGG | + | chr4.1:3738455-3738474 | MS.gene049002:intron | 30.0% |
| ! | TAAACAACGTATAGCTTGTA+TGG | + | chr4.1:3738672-3738691 | MS.gene049002:intron | 30.0% |
| !! | TGTTGATGATTACTCACTAT+CGG | + | chr4.1:3739165-3739184 | MS.gene049002:CDS | 30.0% |
| !!! | CCTTAAGTTTTGAGGAAAAT+GGG | + | chr4.1:3739344-3739363 | MS.gene049002:intron | 30.0% |
| !!! | CTTAAGTTTTGAGGAAAATG+GGG | + | chr4.1:3739345-3739364 | MS.gene049002:intron | 30.0% |
| !!! | GTTGTTTTGATAAGCTATCT+TGG | - | chr4.1:3738624-3738643 | None:intergenic | 30.0% |
| !!! | TCCTTAAGTTTTGAGGAAAA+TGG | + | chr4.1:3739343-3739362 | MS.gene049002:intron | 30.0% |
| AACTCATGAAAAGACCTTCA+AGG | - | chr4.1:3738202-3738221 | None:intergenic | 35.0% | |
| AACTTACCATAACATGGACA+TGG | - | chr4.1:3739217-3739236 | None:intergenic | 35.0% | |
| ACAAATGGAAAGTAGCTGAA+GGG | - | chr4.1:3739397-3739416 | None:intergenic | 35.0% | |
| ACAATAGAACACCGTTGTTT+AGG | + | chr4.1:3739752-3739771 | MS.gene049002:intron | 35.0% | |
| ACTCATGAAAAGACCTTCAA+GGG | - | chr4.1:3738201-3738220 | None:intergenic | 35.0% | |
| ACTTACCATAACATGGACAT+GGG | - | chr4.1:3739216-3739235 | None:intergenic | 35.0% | |
| ATAAAGGCCAGACATATACT+AGG | - | chr4.1:3739917-3739936 | None:intergenic | 35.0% | |
| ATCATCAACAGAGAATTCTC+TGG | - | chr4.1:3739155-3739174 | None:intergenic | 35.0% | |
| ATCTATGGTAGATGCAATTG+AGG | + | chr4.1:3740789-3740808 | MS.gene049002:CDS | 35.0% | |
| ATGCTCATTTATTGGCCATT+TGG | + | chr4.1:3740410-3740429 | MS.gene049002:intron | 35.0% | |
| ATTAAGCTGGTTATCCAGAT+AGG | + | chr4.1:3738768-3738787 | MS.gene049002:intron | 35.0% | |
| CAATTGCATCTACCATAGAT+AGG | - | chr4.1:3740789-3740808 | None:intergenic | 35.0% | |
| CCACTAGTAACTTCATAATC+TGG | - | chr4.1:3738125-3738144 | None:intergenic | 35.0% | |
| CCAGATTATGAAGTTACTAG+TGG | + | chr4.1:3738122-3738141 | MS.gene049002:CDS | 35.0% | |
| CCGTGGTTAATTCATAGTAT+TGG | + | chr4.1:3740126-3740145 | MS.gene049002:intron | 35.0% | |
| CGTAGCTAGCAGAAAATATA+TGG | - | chr4.1:3740258-3740277 | None:intergenic | 35.0% | |
| CGTTGTTATCCTTGATATTG+TGG | + | chr4.1:3738353-3738372 | MS.gene049002:intron | 35.0% | |
| CTCAATAGAAATGTCAACGA+AGG | + | chr4.1:3738984-3739003 | MS.gene049002:CDS | 35.0% | |
| CTTCTAAACTATCAGGACAA+CGG | + | chr4.1:3740742-3740761 | MS.gene049002:intron | 35.0% | |
| GCATAAGTACTTGATTAAGC+TGG | + | chr4.1:3738755-3738774 | MS.gene049002:intron | 35.0% | |
| GTATACAGACGATCTAATTC+AGG | - | chr4.1:3740385-3740404 | None:intergenic | 35.0% | |
| GTCTATCTCAAATCATGCTA+TGG | - | chr4.1:3740547-3740566 | None:intergenic | 35.0% | |
| GTTAATCTCACTATCAACAG+AGG | + | chr4.1:3738029-3738048 | MS.gene049002:CDS | 35.0% | |
| TATACTTGCATCTTATGGGA+AGG | + | chr4.1:3739526-3739545 | MS.gene049002:intron | 35.0% | |
| TCATCAACAGAGAATTCTCT+GGG | - | chr4.1:3739154-3739173 | None:intergenic | 35.0% | |
| TCCATTTGTGTGAATGTACT+CGG | + | chr4.1:3739408-3739427 | MS.gene049002:intron | 35.0% | |
| TCTCATAGATGCCTAAACAA+CGG | - | chr4.1:3739766-3739785 | None:intergenic | 35.0% | |
| TGGAAAAAGTCGCAAAATCA+AGG | - | chr4.1:3738846-3738865 | None:intergenic | 35.0% | |
| TTAAGCTGGTTATCCAGATA+GGG | + | chr4.1:3738769-3738788 | MS.gene049002:intron | 35.0% | |
| TTATGGACGTAAACATCTGT+GGG | + | chr4.1:3738524-3738543 | MS.gene049002:intron | 35.0% | |
| TTCATACACTGTCTATAACG+GGG | - | chr4.1:3740671-3740690 | None:intergenic | 35.0% | |
| TTTATGGACGTAAACATCTG+TGG | + | chr4.1:3738523-3738542 | MS.gene049002:intron | 35.0% | |
| TTTCCTCAAAACTTAAGGAG+AGG | - | chr4.1:3739342-3739361 | None:intergenic | 35.0% | |
| ! | AAACATCTGTGGGATTGTTT+TGG | + | chr4.1:3738534-3738553 | MS.gene049002:intron | 35.0% |
| ! | AGGGGAAAATTTGCTTGAAA+TGG | + | chr4.1:3738160-3738179 | MS.gene049002:CDS | 35.0% |
| ! | ATCTTGCAACTTGCAGTTTT+GGG | + | chr4.1:3739038-3739057 | MS.gene049002:CDS | 35.0% |
| ! | CCCATTTTCCTCAAAACTTA+AGG | - | chr4.1:3739347-3739366 | None:intergenic | 35.0% |
| ! | GACCTACTTTCTTTAGGAAA+TGG | - | chr4.1:3739999-3740018 | None:intergenic | 35.0% |
| ! | TAGTATATGTCTGGCCTTTA+TGG | + | chr4.1:3739916-3739935 | MS.gene049002:intron | 35.0% |
| ! | TTTCCTCTCCTTAAGTTTTG+AGG | + | chr4.1:3739336-3739355 | MS.gene049002:intron | 35.0% |
| !! | AATGTACTCGGTTTTAGCAA+AGG | + | chr4.1:3739420-3739439 | MS.gene049002:intron | 35.0% |
| !! | TAATGGTTTAGGTGCTGATT+TGG | + | chr4.1:3740215-3740234 | MS.gene049002:intron | 35.0% |
| !!! | AGTGGTAGTGTTGTTTTCAA+AGG | + | chr4.1:3738140-3738159 | MS.gene049002:CDS | 35.0% |
| !!! | GTGGTAGTGTTGTTTTCAAA+GGG | + | chr4.1:3738141-3738160 | MS.gene049002:CDS | 35.0% |
| !!! | TGGTAGTGTTGTTTTCAAAG+GGG | + | chr4.1:3738142-3738161 | MS.gene049002:CDS | 35.0% |
| AATGCTCGGAGAAAGAAACT+TGG | + | chr4.1:3738281-3738300 | MS.gene049002:CDS | 40.0% | |
| AATGTCAACGAAGGGTTTAG+TGG | + | chr4.1:3738993-3739012 | MS.gene049002:CDS | 40.0% | |
| ACCGAGTACATTCACACAAA+TGG | - | chr4.1:3739412-3739431 | None:intergenic | 40.0% | |
| ACTTCAGCTGATAATCCTCT+AGG | - | chr4.1:3739970-3739989 | None:intergenic | 40.0% | |
| ACTTTCGCTAAGGTTCTTGT+GGG | + | chr4.1:3738095-3738114 | MS.gene049002:CDS | 40.0% | |
| ATCATGGGAAAAAACGGTTC+TGG | + | chr4.1:3738065-3738084 | MS.gene049002:CDS | 40.0% | |
| ATCTGATCTTCTCTCCCTAT+CGG | - | chr4.1:3739804-3739823 | None:intergenic | 40.0% | |
| CACAAATGGAAAGTAGCTGA+AGG | - | chr4.1:3739398-3739417 | None:intergenic | 40.0% | |
| CACGCTATCATGGGAAAAAA+CGG | + | chr4.1:3738059-3738078 | MS.gene049002:CDS | 40.0% | |
| CATCAACAGAGAATTCTCTG+GGG | - | chr4.1:3739153-3739172 | None:intergenic | 40.0% | |
| CTCTGATCCTAGTATATGTC+TGG | + | chr4.1:3739907-3739926 | MS.gene049002:intron | 40.0% | |
| GGAGAAGAACGGAATTGAAA+TGG | - | chr4.1:3737888-3737907 | None:intergenic | 40.0% | |
| GGTAGATCAAGGAAAACCAT+TGG | + | chr4.1:3739846-3739865 | MS.gene049002:intron | 40.0% | |
| GTGGGTTCATCTACATTGAA+GGG | - | chr4.1:3739948-3739967 | None:intergenic | 40.0% | |
| GTTGTTTAGGCATCTATGAG+AGG | + | chr4.1:3739765-3739784 | MS.gene049002:intron | 40.0% | |
| TAAAAAAGGGCTACACACAG+TGG | - | chr4.1:3738871-3738890 | None:intergenic | 40.0% | |
| TCAGTCTCAGACTTTAAGTG+AGG | + | chr4.1:3739294-3739313 | MS.gene049002:intron | 40.0% | |
| ! | AAACTTGGTCTTCCTGAACT+TGG | + | chr4.1:3738296-3738315 | MS.gene049002:CDS | 40.0% |
| ! | AACATTATCCTTTGAGGGAC+TGG | - | chr4.1:3740044-3740063 | None:intergenic | 40.0% |
| ! | ACATTATCCTTTGAGGGACT+GGG | - | chr4.1:3740043-3740062 | None:intergenic | 40.0% |
| ! | GATCTTGCAACTTGCAGTTT+TGG | + | chr4.1:3739037-3739056 | MS.gene049002:CDS | 40.0% |
| ! | GGGTTCAGGTGCTTAATTTT+AGG | + | chr4.1:3739365-3739384 | MS.gene049002:intron | 40.0% |
| ! | TCTTGCAACTTGCAGTTTTG+GGG | + | chr4.1:3739039-3739058 | MS.gene049002:CDS | 40.0% |
| ! | TGTGTGATTTGGGAGAAGAA+CGG | - | chr4.1:3737899-3737918 | None:intergenic | 40.0% |
| !! | CTGATTTGGCAACTTTAGCA+GGG | + | chr4.1:3740229-3740248 | MS.gene049002:intron | 40.0% |
| !! | GGATGAAATTGATTCGGGAT+TGG | + | chr4.1:3739079-3739098 | MS.gene049002:CDS | 40.0% |
| !! | GGCATTGGATTCAACGATTT+TGG | - | chr4.1:3737994-3738013 | None:intergenic | 40.0% |
| !! | TGGTAAAAGCACTTTCGCTA+AGG | + | chr4.1:3738085-3738104 | MS.gene049002:CDS | 40.0% |
| !! | TTTTGAGGAAAATGGGGTTC+AGG | + | chr4.1:3739351-3739370 | MS.gene049002:intron | 40.0% |
| !!! | CTGTGTGTAGCCCTTTTTTA+TGG | + | chr4.1:3738871-3738890 | MS.gene049002:intron | 40.0% |
| !!! | GGATTGTTTTGGAGAGCTTT+TGG | + | chr4.1:3738545-3738564 | MS.gene049002:intron | 40.0% |
| AACGGAAGAATTGCAAGGAC+AGG | + | chr4.1:3740760-3740779 | MS.gene049002:CDS | 45.0% | |
| AACTGCATTTAGGCCCTATC+TGG | - | chr4.1:3738785-3738804 | None:intergenic | 45.0% | |
| ACCATAACATGGACATGGGA+GGG | - | chr4.1:3739212-3739231 | None:intergenic | 45.0% | |
| AGGACAACGGAAGAATTGCA+AGG | + | chr4.1:3740755-3740774 | MS.gene049002:intron | 45.0% | |
| AGGCGAAATTCACGCTATCA+TGG | + | chr4.1:3738049-3738068 | MS.gene049002:CDS | 45.0% | |
| ATGTAGATGAACCCACCTAG+AGG | + | chr4.1:3739952-3739971 | MS.gene049002:intron | 45.0% | |
| ATTAACGCCGCGGAGAATTT+CGG | - | chr4.1:3738015-3738034 | None:intergenic | 45.0% | |
| ATTGGATGTTGATGCGCTCA+GGG | + | chr4.1:3739097-3739116 | MS.gene049002:CDS | 45.0% | |
| CAATCACCTGTTGCAATTCC+TGG | + | chr4.1:3738224-3738243 | MS.gene049002:CDS | 45.0% | |
| CACGACATCACTTGGTACAA+TGG | - | chr4.1:3739632-3739651 | None:intergenic | 45.0% | |
| CACTTTCGCTAAGGTTCTTG+TGG | + | chr4.1:3738094-3738113 | MS.gene049002:CDS | 45.0% | |
| CAGCTGATAATCCTCTAGGT+GGG | - | chr4.1:3739966-3739985 | None:intergenic | 45.0% | |
| GAAACACCAGGAATTGCAAC+AGG | - | chr4.1:3738233-3738252 | None:intergenic | 45.0% | |
| GGCGAAATTCACGCTATCAT+GGG | + | chr4.1:3738050-3738069 | MS.gene049002:CDS | 45.0% | |
| GTAGATGCAATTGAGGCAGA+TGG | + | chr4.1:3740796-3740815 | MS.gene049002:CDS | 45.0% | |
| GTTCATCTACATTGAAGGGC+CGG | - | chr4.1:3739944-3739963 | None:intergenic | 45.0% | |
| TACCATAACATGGACATGGG+AGG | - | chr4.1:3739213-3739232 | None:intergenic | 45.0% | |
| TCAGCTGATAATCCTCTAGG+TGG | - | chr4.1:3739967-3739986 | None:intergenic | 45.0% | |
| TGAGGCAGATGGATATGAAC+TGG | + | chr4.1:3740807-3740826 | MS.gene049002:CDS | 45.0% | |
| TGCATGCCTGACTGCAATTA+AGG | - | chr4.1:3738815-3738834 | None:intergenic | 45.0% | |
| TTAGTTTCCCAGTCCCTCAA+AGG | + | chr4.1:3740033-3740052 | MS.gene049002:intron | 45.0% | |
| ! | GGTGGGTTCATCTACATTGA+AGG | - | chr4.1:3739949-3739968 | None:intergenic | 45.0% |
| ! | TGATAGTGAGATTAACGCCG+CGG | - | chr4.1:3738025-3738044 | None:intergenic | 45.0% |
| !! | AAGATCGTTGACTTGGAGGA+GGG | - | chr4.1:3737967-3737986 | None:intergenic | 45.0% |
| !! | CTTGCAACTTGCAGTTTTGG+GGG | + | chr4.1:3739040-3739059 | MS.gene049002:CDS | 45.0% |
| !! | GCTGATTTGGCAACTTTAGC+AGG | + | chr4.1:3740228-3740247 | MS.gene049002:intron | 45.0% |
| !!! | TCATTTTATTTTATTTTTTA+TGG | - | chr4.1:3739711-3739730 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTAAGAATAA+AGG | + | chr4.1:3740286-3740305 | MS.gene049002:intron | 5.0% |
| AAGGACAGGCGACCTATCTA+TGG | + | chr4.1:3740774-3740793 | MS.gene049002:CDS | 50.0% | |
| AAGGGCTACACACAGTGGTT+TGG | - | chr4.1:3738866-3738885 | None:intergenic | 50.0% | |
| ACCCTCCCATGTCCATGTTA+TGG | + | chr4.1:3739208-3739227 | MS.gene049002:CDS | 50.0% | |
| AGGCCGCATCAACTGCATTT+AGG | - | chr4.1:3738795-3738814 | None:intergenic | 50.0% | |
| ATGCGGCCTTAATTGCAGTC+AGG | + | chr4.1:3738806-3738825 | MS.gene049002:intron | 50.0% | |
| CCTGAAGAAAGAGCCCTTGA+AGG | + | chr4.1:3738185-3738204 | MS.gene049002:CDS | 50.0% | |
| CCTTCAAGGGCTCTTTCTTC+AGG | - | chr4.1:3738188-3738207 | None:intergenic | 50.0% | |
| GATTGGATGTTGATGCGCTC+AGG | + | chr4.1:3739096-3739115 | MS.gene049002:CDS | 50.0% | |
| GGCATCTATGAGAGGACATG+TGG | + | chr4.1:3739773-3739792 | MS.gene049002:intron | 50.0% | |
| GTCAACGAAGGGTTTAGTGG+AGG | + | chr4.1:3738996-3739015 | MS.gene049002:CDS | 50.0% | |
| TCCAATGCCGAAATTCTCCG+CGG | + | chr4.1:3738005-3738024 | MS.gene049002:CDS | 50.0% | |
| TTGCGGCGAGTGTGTGATTT+GGG | - | chr4.1:3737909-3737928 | None:intergenic | 50.0% | |
| TTTGCGGCGAGTGTGTGATT+TGG | - | chr4.1:3737910-3737929 | None:intergenic | 50.0% | |
| ! | ATGTCTGGCCTTTATGGCAC+CGG | + | chr4.1:3739922-3739941 | MS.gene049002:intron | 50.0% |
| ! | CACTGTCTATAACGGGGATC+AGG | - | chr4.1:3740665-3740684 | None:intergenic | 50.0% |
| ! | GGGCCTAAATGCAGTTGATG+CGG | + | chr4.1:3738789-3738808 | MS.gene049002:intron | 50.0% |
| ! | GGGGGCAGATTTGGCTATTT+TGG | + | chr4.1:3739058-3739077 | MS.gene049002:CDS | 50.0% |
| ! | TGGCTCGAAGATCGTTGACT+TGG | - | chr4.1:3737974-3737993 | None:intergenic | 50.0% |
| !! | AGATCGTTGACTTGGAGGAG+GGG | - | chr4.1:3737966-3737985 | None:intergenic | 50.0% |
| !! | CTCGAAGATCGTTGACTTGG+AGG | - | chr4.1:3737971-3737990 | None:intergenic | 50.0% |
| !! | GAAGATCGTTGACTTGGAGG+AGG | - | chr4.1:3737968-3737987 | None:intergenic | 50.0% |
| !! | GACATGTGGAAGCACCGATA+GGG | + | chr4.1:3739787-3739806 | MS.gene049002:intron | 50.0% |
| !!! | TGCAGTTTTGGGGGCAGATT+TGG | + | chr4.1:3739049-3739068 | MS.gene049002:CDS | 50.0% |
| ACCTCAAGGGGTCCAAGTTC+AGG | - | chr4.1:3738311-3738330 | None:intergenic | 55.0% | |
| CAAATTCGCCTGCTTTGCGG+CGG | + | chr4.1:3737926-3737945 | MS.gene049002:CDS | 55.0% | |
| CCGCAAAGCAGGCGAATTTG+CGG | - | chr4.1:3737926-3737945 | None:intergenic | 55.0% | |
| CCGCAAATTCGCCTGCTTTG+CGG | + | chr4.1:3737923-3737942 | MS.gene049002:CDS | 55.0% | |
| TCCTGAACTTGGACCCCTTG+AGG | + | chr4.1:3738307-3738326 | MS.gene049002:CDS | 55.0% | |
| TGTTGATGCGCTCAGGGATG+TGG | + | chr4.1:3739103-3739122 | MS.gene049002:CDS | 55.0% | |
| !! | GGACATGTGGAAGCACCGAT+AGG | + | chr4.1:3739786-3739805 | MS.gene049002:intron | 55.0% |
| !! | TTGAAGGGCCGGTGCCATAA+AGG | - | chr4.1:3739933-3739952 | None:intergenic | 55.0% |
| GACTTGGAGGAGGGGAACCT+CGG | - | chr4.1:3737958-3737977 | None:intergenic | 60.0% | |
| GCCGCGGAGAATTTCGGCAT+TGG | - | chr4.1:3738009-3738028 | None:intergenic | 60.0% | |
| GCTCAGGGATGTGGCAAGTG+CGG | + | chr4.1:3739112-3739131 | MS.gene049002:CDS | 60.0% | |
| GGTGCTCGCCGCCGCAAAGC+AGG | - | chr4.1:3737937-3737956 | None:intergenic | 75.0% | |
| ! | CTTTGCGGCGGCGAGCACCG+AGG | + | chr4.1:3737938-3737957 | MS.gene049002:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 3737861 | 3740846 | 3737861 | ID=MS.gene049002 |
| chr4.1 | mRNA | 3737861 | 3740846 | 3737861 | ID=MS.gene049002.t1;Parent=MS.gene049002 |
| chr4.1 | exon | 3737861 | 3738328 | 3737861 | ID=MS.gene049002.t1.exon1;Parent=MS.gene049002.t1 |
| chr4.1 | CDS | 3737861 | 3738328 | 3737861 | ID=cds.MS.gene049002.t1;Parent=MS.gene049002.t1 |
| chr4.1 | exon | 3738930 | 3739229 | 3738930 | ID=MS.gene049002.t1.exon2;Parent=MS.gene049002.t1 |
| chr4.1 | CDS | 3738930 | 3739229 | 3738930 | ID=cds.MS.gene049002.t1;Parent=MS.gene049002.t1 |
| chr4.1 | exon | 3740757 | 3740846 | 3740757 | ID=MS.gene049002.t1.exon3;Parent=MS.gene049002.t1 |
| chr4.1 | CDS | 3740757 | 3740846 | 3740757 | ID=cds.MS.gene049002.t1;Parent=MS.gene049002.t1 |
| Gene Sequence |
| Protein sequence |
