Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049383.t1 | XP_013461535.1 | 97.7 | 345 | 8 | 0 | 1 | 345 | 1 | 345 | 2.50E-180 | 641.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049383.t1 | Q8RXL8 | 78.0 | 354 | 69 | 1 | 1 | 345 | 1 | 354 | 9.7e-149 | 527.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049383.t1 | A0A072VBK1 | 97.7 | 345 | 8 | 0 | 1 | 345 | 1 | 345 | 1.8e-180 | 641.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049383 | MS.gene24076 | PPI |
| MS.gene049383 | MS.gene88927 | PPI |
| MS.gene24078 | MS.gene049383 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049383.t1 | MTR_3g094270 | 97.681 | 345 | 8 | 0 | 1 | 345 | 1 | 345 | 0.0 | 684 |
| MS.gene049383.t1 | MTR_3g094260 | 83.954 | 349 | 52 | 1 | 1 | 345 | 1 | 349 | 0.0 | 582 |
| MS.gene049383.t1 | MTR_4g058860 | 66.261 | 329 | 110 | 1 | 1 | 328 | 1 | 329 | 5.95e-155 | 439 |
| MS.gene049383.t1 | MTR_2g094640 | 64.157 | 332 | 115 | 2 | 1 | 328 | 1 | 332 | 1.33e-152 | 433 |
| MS.gene049383.t1 | MTR_3g095130 | 37.374 | 297 | 179 | 3 | 2 | 295 | 7 | 299 | 5.88e-59 | 193 |
| MS.gene049383.t1 | MTR_8g092190 | 40.268 | 298 | 169 | 6 | 2 | 295 | 7 | 299 | 9.10e-59 | 193 |
| MS.gene049383.t1 | MTR_1g026590 | 36.890 | 328 | 196 | 4 | 13 | 329 | 14 | 341 | 4.75e-55 | 184 |
| MS.gene049383.t1 | MTR_1g098240 | 38.516 | 283 | 173 | 1 | 14 | 295 | 17 | 299 | 3.39e-54 | 181 |
| MS.gene049383.t1 | MTR_5g004620 | 35.202 | 321 | 199 | 4 | 4 | 317 | 7 | 325 | 1.56e-51 | 174 |
| MS.gene049383.t1 | MTR_3g095130 | 36.777 | 242 | 151 | 2 | 56 | 295 | 9 | 250 | 4.57e-48 | 164 |
| MS.gene049383.t1 | MTR_1291s0010 | 70.874 | 103 | 30 | 0 | 1 | 103 | 1 | 103 | 1.36e-42 | 144 |
| MS.gene049383.t1 | MTR_5g096310 | 28.487 | 337 | 222 | 4 | 10 | 333 | 55 | 385 | 5.42e-35 | 132 |
| MS.gene049383.t1 | MTR_2g038410 | 27.301 | 326 | 223 | 3 | 10 | 331 | 54 | 369 | 2.64e-32 | 124 |
| MS.gene049383.t1 | MTR_3g072380 | 25.397 | 315 | 217 | 6 | 22 | 325 | 26 | 333 | 6.03e-25 | 103 |
| MS.gene049383.t1 | MTR_1g030320 | 24.921 | 317 | 219 | 6 | 22 | 325 | 25 | 335 | 8.56e-24 | 100 |
| MS.gene049383.t1 | MTR_0011s0320 | 24.779 | 339 | 214 | 13 | 22 | 332 | 25 | 350 | 4.36e-16 | 78.6 |
| MS.gene049383.t1 | MTR_4g114360 | 24.771 | 327 | 201 | 12 | 22 | 319 | 25 | 335 | 2.60e-15 | 76.3 |
| MS.gene049383.t1 | MTR_3g107470 | 24.465 | 327 | 202 | 12 | 22 | 319 | 29 | 339 | 1.80e-14 | 73.9 |
| MS.gene049383.t1 | MTR_2g070400 | 23.894 | 339 | 238 | 10 | 1 | 325 | 1 | 333 | 3.10e-12 | 67.0 |
| MS.gene049383.t1 | MTR_7g110380 | 23.724 | 333 | 228 | 10 | 22 | 341 | 26 | 345 | 2.93e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049383.t1 | AT1G06890 | 77.966 | 354 | 69 | 1 | 1 | 345 | 1 | 354 | 0.0 | 535 |
| MS.gene049383.t1 | AT1G06890 | 77.966 | 354 | 69 | 1 | 1 | 345 | 1 | 354 | 0.0 | 535 |
| MS.gene049383.t1 | AT2G30460 | 77.714 | 350 | 73 | 1 | 1 | 345 | 1 | 350 | 0.0 | 533 |
| MS.gene049383.t1 | AT2G30460 | 77.714 | 350 | 73 | 1 | 1 | 345 | 1 | 350 | 0.0 | 533 |
| MS.gene049383.t1 | AT1G06890 | 80.896 | 335 | 64 | 0 | 1 | 335 | 1 | 335 | 0.0 | 528 |
| MS.gene049383.t1 | AT1G06890 | 80.896 | 335 | 64 | 0 | 1 | 335 | 1 | 335 | 0.0 | 528 |
| MS.gene049383.t1 | AT2G30460 | 73.414 | 331 | 81 | 2 | 20 | 345 | 1 | 329 | 1.49e-178 | 498 |
| MS.gene049383.t1 | AT2G30460 | 73.414 | 331 | 81 | 2 | 20 | 345 | 1 | 329 | 1.49e-178 | 498 |
| MS.gene049383.t1 | AT2G30460 | 73.414 | 331 | 81 | 2 | 20 | 345 | 1 | 329 | 1.49e-178 | 498 |
| MS.gene049383.t1 | AT2G28315 | 64.140 | 343 | 118 | 2 | 1 | 339 | 1 | 342 | 4.84e-156 | 441 |
| MS.gene049383.t1 | AT2G28315 | 69.737 | 304 | 92 | 0 | 1 | 304 | 1 | 304 | 2.46e-153 | 433 |
| MS.gene049383.t1 | AT2G30460 | 83.784 | 222 | 36 | 0 | 1 | 222 | 1 | 222 | 3.77e-120 | 350 |
| MS.gene049383.t1 | AT4G09810 | 39.873 | 316 | 181 | 4 | 13 | 321 | 16 | 329 | 1.62e-65 | 210 |
| MS.gene049383.t1 | AT1G34020 | 37.942 | 311 | 184 | 4 | 18 | 321 | 21 | 329 | 4.51e-61 | 199 |
| MS.gene049383.t1 | AT1G34020 | 37.942 | 311 | 184 | 4 | 18 | 321 | 21 | 329 | 4.51e-61 | 199 |
| MS.gene049383.t1 | AT1G34020 | 37.942 | 311 | 184 | 4 | 18 | 321 | 21 | 329 | 4.51e-61 | 199 |
| MS.gene049383.t1 | AT5G42420 | 35.669 | 314 | 196 | 2 | 12 | 319 | 16 | 329 | 1.55e-59 | 195 |
| MS.gene049383.t1 | AT1G21070 | 37.459 | 307 | 186 | 3 | 3 | 305 | 7 | 311 | 3.13e-59 | 194 |
| MS.gene049383.t1 | AT1G76670 | 36.760 | 321 | 197 | 3 | 3 | 319 | 6 | 324 | 1.86e-58 | 192 |
| MS.gene049383.t1 | AT1G76670 | 36.760 | 321 | 197 | 3 | 3 | 319 | 6 | 324 | 1.86e-58 | 192 |
| MS.gene049383.t1 | AT4G39390 | 36.842 | 285 | 179 | 1 | 12 | 295 | 16 | 300 | 4.26e-57 | 189 |
| MS.gene049383.t1 | AT4G39390 | 36.842 | 285 | 179 | 1 | 12 | 295 | 20 | 304 | 4.65e-57 | 189 |
| MS.gene049383.t1 | AT4G39390 | 36.842 | 285 | 179 | 1 | 12 | 295 | 20 | 304 | 4.65e-57 | 189 |
| MS.gene049383.t1 | AT4G09810 | 39.464 | 261 | 151 | 3 | 66 | 321 | 14 | 272 | 1.92e-55 | 182 |
| MS.gene049383.t1 | AT4G09810 | 41.905 | 210 | 118 | 2 | 13 | 220 | 16 | 223 | 1.19e-44 | 153 |
| MS.gene049383.t1 | AT5G55950 | 29.794 | 339 | 220 | 5 | 10 | 337 | 56 | 387 | 2.67e-38 | 141 |
| MS.gene049383.t1 | AT5G55950 | 29.641 | 334 | 217 | 5 | 15 | 337 | 1 | 327 | 2.00e-37 | 137 |
| MS.gene049383.t1 | AT5G57100 | 29.310 | 290 | 197 | 2 | 10 | 295 | 63 | 348 | 2.81e-35 | 132 |
| MS.gene049383.t1 | AT5G55950 | 29.630 | 297 | 197 | 4 | 46 | 337 | 20 | 309 | 8.13e-34 | 127 |
| MS.gene049383.t1 | AT5G42420 | 28.025 | 314 | 153 | 7 | 12 | 319 | 16 | 262 | 2.36e-29 | 114 |
| MS.gene049383.t1 | AT5G55950 | 30.579 | 242 | 156 | 3 | 10 | 245 | 56 | 291 | 2.53e-27 | 109 |
| MS.gene049383.t1 | AT5G57100 | 28.333 | 240 | 164 | 2 | 10 | 245 | 63 | 298 | 4.25e-26 | 106 |
| MS.gene049383.t1 | AT5G57100 | 29.798 | 198 | 135 | 1 | 98 | 295 | 40 | 233 | 3.21e-24 | 100 |
| MS.gene049383.t1 | AT5G57100 | 31.395 | 172 | 114 | 1 | 10 | 177 | 63 | 234 | 1.02e-21 | 93.6 |
| MS.gene049383.t1 | AT1G77610 | 24.444 | 315 | 221 | 5 | 22 | 325 | 20 | 328 | 1.11e-20 | 91.7 |
| MS.gene049383.t1 | AT1G21870 | 25.000 | 320 | 227 | 5 | 22 | 332 | 26 | 341 | 7.37e-20 | 89.4 |
| MS.gene049383.t1 | AT5G11230 | 24.791 | 359 | 225 | 11 | 9 | 330 | 1 | 351 | 3.22e-19 | 87.8 |
| MS.gene049383.t1 | AT5G25400 | 25.152 | 330 | 223 | 10 | 22 | 338 | 29 | 347 | 3.49e-17 | 82.0 |
| MS.gene049383.t1 | AT2G25520 | 24.776 | 335 | 212 | 11 | 22 | 335 | 29 | 344 | 2.66e-15 | 76.3 |
| MS.gene049383.t1 | AT4G32390 | 24.845 | 322 | 210 | 11 | 22 | 320 | 29 | 341 | 1.18e-14 | 74.3 |
| MS.gene049383.t1 | AT5G05820 | 23.826 | 298 | 208 | 4 | 11 | 295 | 11 | 302 | 2.48e-11 | 64.3 |
| MS.gene049383.t1 | AT3G11320 | 24.497 | 298 | 206 | 6 | 11 | 295 | 11 | 302 | 3.19e-11 | 63.9 |
Find 50 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGTACATTTCTTGTAAT+TGG | 0.131705 | 3.1:-75420004 | MS.gene049383:CDS |
| TTCTCTTGCAATCCTACTTT+TGG | 0.152506 | 3.1:-75420943 | MS.gene049383:CDS |
| GTTGATAACCGGACCATATT+TGG | 0.214078 | 3.1:-75420208 | MS.gene049383:CDS |
| GAGAAACATACTAGGAATTT+TGG | 0.218917 | 3.1:-75419885 | MS.gene049383:CDS |
| CCCCTCATTAACGTGGAAAA+TGG | 0.263001 | 3.1:-75419651 | MS.gene049383:CDS |
| TGGGTTGTTAAATTTGAGTC+TGG | 0.271944 | 3.1:-75422046 | MS.gene049383:CDS |
| ACATGTCTTGTACTGGCTTT+TGG | 0.278525 | 3.1:-75419938 | MS.gene049383:CDS |
| CAGAAAGCGGTGATGGGATT+TGG | 0.280505 | 3.1:-75422090 | MS.gene049383:CDS |
| AACAAGGTTGCTGCCTGATA+TGG | 0.285190 | 3.1:+75420228 | None:intergenic |
| ATTCTGAATGGAATCTCTAT+TGG | 0.289477 | 3.1:-75422066 | MS.gene049383:CDS |
| AGTATGTTTCTCCAACTAAA+AGG | 0.331771 | 3.1:+75419896 | None:intergenic |
| AACTGCAGCACAGGCATTAC+AGG | 0.333084 | 3.1:-75419795 | MS.gene049383:intron |
| TTCTGAATGGAATCTCTATT+GGG | 0.376737 | 3.1:-75422065 | MS.gene049383:CDS |
| CCAAGGACTTGGTAGGTAAC+TGG | 0.383495 | 3.1:+75419971 | None:intergenic |
| GTAGGATTGCAAGAGAAAAC+TGG | 0.387198 | 3.1:+75420949 | None:intergenic |
| TTCATGTCTTATTTCTATCT+CGG | 0.391540 | 3.1:-75420032 | MS.gene049383:CDS |
| ATATCAATCATGTCCATATC+AGG | 0.392944 | 3.1:-75420241 | MS.gene049383:CDS |
| GGGTTGTTAAATTTGAGTCT+GGG | 0.441493 | 3.1:-75422045 | MS.gene049383:CDS |
| AGTCTGGGTTTCAATTCTGT+TGG | 0.443753 | 3.1:-75422030 | MS.gene049383:CDS |
| CAATTCTGTTGGATTCTACC+AGG | 0.443860 | 3.1:-75422019 | MS.gene049383:intron |
| ATCACCGCTTTCTGCTCAAA+AGG | 0.450801 | 3.1:+75422099 | None:intergenic |
| TCTTAAGATGTCCAAGGACT+TGG | 0.466403 | 3.1:+75419960 | None:intergenic |
| GCAGCAACCTTGTTGATAAC+CGG | 0.471022 | 3.1:-75420219 | MS.gene049383:CDS |
| GTGCACCGATAGTTCCCAAT+TGG | 0.471388 | 3.1:+75423249 | None:intergenic |
| CCAGTTACCTACCAAGTCCT+TGG | 0.485286 | 3.1:-75419971 | MS.gene049383:CDS |
| GATTTACAACTCAATGCGTT+GGG | 0.485909 | 3.1:-75420897 | MS.gene049383:CDS |
| CAGCTACAACATTGACAAGT+TGG | 0.486149 | 3.1:-75422185 | MS.gene049383:CDS |
| AATTCCGTGTACTATTCTAC+TGG | 0.494484 | 3.1:-75421877 | MS.gene049383:CDS |
| CAATTCCAACACCCAAAAGT+AGG | 0.494991 | 3.1:+75420931 | None:intergenic |
| TGATTTACAACTCAATGCGT+TGG | 0.498236 | 3.1:-75420898 | MS.gene049383:CDS |
| TTTAGTTGGAGAAACATACT+AGG | 0.501343 | 3.1:-75419893 | MS.gene049383:CDS |
| ATGGGATTTGGAATTCTGAA+TGG | 0.502641 | 3.1:-75422078 | MS.gene049383:CDS |
| TCTTAAGACATGTCTTGTAC+TGG | 0.504547 | 3.1:-75419945 | MS.gene049383:CDS |
| AGCACTTGAAACTGCAGCAC+AGG | 0.506873 | 3.1:-75419804 | MS.gene049383:CDS |
| GATTCTCAAGAATGCAAAAG+TGG | 0.512823 | 3.1:+75419834 | None:intergenic |
| AAATTCCAATTGGGAACTAT+CGG | 0.532072 | 3.1:-75423254 | MS.gene049383:CDS |
| ATGCATTCAGATGACAAAGT+TGG | 0.545812 | 3.1:-75421904 | MS.gene049383:intron |
| TTTGAGCAGAAAGCGGTGAT+GGG | 0.547487 | 3.1:-75422096 | MS.gene049383:CDS |
| GAAGTACAATATTGAACAAG+AGG | 0.558506 | 3.1:-75419629 | MS.gene049383:CDS |
| TAGGATTGCAAGAGAAAACT+GGG | 0.603720 | 3.1:+75420950 | None:intergenic |
| ATTCTCAAGAATGCAAAAGT+GGG | 0.604113 | 3.1:+75419835 | None:intergenic |
| ATCTGATCCCCTCATTAACG+TGG | 0.611663 | 3.1:-75419658 | MS.gene049383:CDS |
| ATATGGTCCGGTTATCAACA+AGG | 0.616786 | 3.1:+75420212 | None:intergenic |
| CAAGTACACAACACAAGTGA+CGG | 0.633666 | 3.1:-75420151 | MS.gene049383:intron |
| GTCGATTGTGATTTGTAACA+AGG | 0.635859 | 3.1:-75423201 | MS.gene049383:CDS |
| ATACATAAGCATCCCAACCA+TGG | 0.648173 | 3.1:+75419859 | None:intergenic |
| CGGTGCACTGAGTCTATCTG+TGG | 0.660483 | 3.1:-75423234 | MS.gene049383:CDS |
| AAGATGTCCAAGGACTTGGT+AGG | 0.668600 | 3.1:+75419964 | None:intergenic |
| ATCTCCAGTAGAATAGTACA+CGG | 0.681945 | 3.1:+75421873 | None:intergenic |
| GACATGTCTTAAGATGTCCA+AGG | 0.714030 | 3.1:+75419954 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAAAAATATGATATT+AGG | + | chr3.1:75420343-75420362 | None:intergenic | 10.0% |
| !! | TAAAAGTAATATTGATAAAA+TGG | + | chr3.1:75421673-75421692 | None:intergenic | 10.0% |
| !! | TAAATTATTAAGGTTATTAT+TGG | - | chr3.1:75421731-75421750 | MS.gene049383:intron | 10.0% |
| !!! | AAAAATGATAATGATAATTT+TGG | + | chr3.1:75421529-75421548 | None:intergenic | 10.0% |
| !! | TAAACACAAAAAATAGATAA+TGG | + | chr3.1:75421318-75421337 | None:intergenic | 15.0% |
| !! | TCGTTAAAAATAATTTCATA+AGG | + | chr3.1:75422145-75422164 | None:intergenic | 15.0% |
| !!! | ACTTATATTTTCTCTTATTA+TGG | - | chr3.1:75422328-75422347 | MS.gene049383:intron | 15.0% |
| !!! | ATTATCATTATCATTTTTTC+TGG | - | chr3.1:75421531-75421550 | MS.gene049383:intron | 15.0% |
| !!! | TAGATAATTTAATTTAAACG+AGG | - | chr3.1:75419857-75419876 | MS.gene049383:CDS | 15.0% |
| !!! | TATCATAAGAACAATTTTAT+AGG | + | chr3.1:75422222-75422241 | None:intergenic | 15.0% |
| !!! | TTTTTATTTGCAATTTGATA+TGG | - | chr3.1:75419744-75419763 | MS.gene049383:intron | 15.0% |
| !! | AAAATATTAAAAAGGAACGA+AGG | - | chr3.1:75421830-75421849 | MS.gene049383:intron | 20.0% |
| !! | AACTATAAAATGTTTGAGTA+AGG | + | chr3.1:75421389-75421408 | None:intergenic | 20.0% |
| !! | ACAAAAGTAACAAAGTTAAT+TGG | - | chr3.1:75421773-75421792 | MS.gene049383:intron | 20.0% |
| !! | ATTTACTTTAATCGACAATA+AGG | + | chr3.1:75420102-75420121 | None:intergenic | 20.0% |
| !! | CAAAATAAAATCTATGAATG+CGG | + | chr3.1:75420521-75420540 | None:intergenic | 20.0% |
| !! | CAGTAAATACTTTAATAGTT+AGG | + | chr3.1:75420438-75420457 | None:intergenic | 20.0% |
| !! | GAAATTGAGATAATTGTAAA+TGG | + | chr3.1:75421133-75421152 | None:intergenic | 20.0% |
| !! | TTATCGTCTATATACATTTA+TGG | - | chr3.1:75421057-75421076 | MS.gene049383:intron | 20.0% |
| !! | TTTAGTACATTTCTTGTAAT+TGG | - | chr3.1:75422864-75422883 | MS.gene049383:intron | 20.0% |
| !!! | ATATAAGATCTTTTTTGTTC+CGG | + | chr3.1:75420166-75420185 | None:intergenic | 20.0% |
| !!! | ATTAAAGTATTTACTGGATT+TGG | - | chr3.1:75420442-75420461 | MS.gene049383:intron | 20.0% |
| !!! | CTAACTATTAAAGTATTTAC+TGG | - | chr3.1:75420436-75420455 | MS.gene049383:intron | 20.0% |
| !!! | GCATTCATAGATTTTATTTT+GGG | - | chr3.1:75420520-75420539 | MS.gene049383:intron | 20.0% |
| !!! | TTAAAGTATTTACTGGATTT+GGG | - | chr3.1:75420443-75420462 | MS.gene049383:intron | 20.0% |
| ! | AAATGTATATAGACGATAAG+AGG | + | chr3.1:75421056-75421075 | None:intergenic | 25.0% |
| ! | AATATGATATTAGGTCACAT+CGG | + | chr3.1:75420334-75420353 | None:intergenic | 25.0% |
| ! | ACAAAGTTAATTGGTTACTT+TGG | - | chr3.1:75421782-75421801 | MS.gene049383:intron | 25.0% |
| ! | ATTAGAACTTATCATCAACA+AGG | + | chr3.1:75420050-75420069 | None:intergenic | 25.0% |
| ! | CCATGATAAAACTAATTGAA+TGG | + | chr3.1:75420401-75420420 | None:intergenic | 25.0% |
| ! | GATAGAGAAAAATTCCAATT+GGG | - | chr3.1:75419605-75419624 | MS.gene049383:CDS | 25.0% |
| ! | TAATATTGATAAAATGGCAG+AGG | + | chr3.1:75421667-75421686 | None:intergenic | 25.0% |
| ! | TATTTGCAATTTGATATGGT+TGG | - | chr3.1:75419748-75419767 | MS.gene049383:intron | 25.0% |
| ! | TCTCCATTTCTCAAAATAAA+TGG | + | chr3.1:75421362-75421381 | None:intergenic | 25.0% |
| ! | TGATAGAGAAAAATTCCAAT+TGG | - | chr3.1:75419604-75419623 | MS.gene049383:CDS | 25.0% |
| !! | AATCCTTTATTGTTGTTGTT+TGG | - | chr3.1:75420901-75420920 | MS.gene049383:CDS | 25.0% |
| !! | AATTTTATCCAAATATGGTC+CGG | + | chr3.1:75422671-75422690 | None:intergenic | 25.0% |
| !! | AGTACATTGCAATTCATTTT+TGG | - | chr3.1:75419698-75419717 | MS.gene049383:intron | 25.0% |
| !! | ATAAGTTTGAATGTTTGTTG+AGG | - | chr3.1:75420014-75420033 | MS.gene049383:CDS | 25.0% |
| !! | CAAGAGTGAAATTTTCTTTA+AGG | + | chr3.1:75422050-75422069 | None:intergenic | 25.0% |
| !! | CTTTTTCCTTATTCCAAATA+GGG | + | chr3.1:75423267-75423286 | None:intergenic | 25.0% |
| !! | GTGAGAATTTTATCCAAATA+TGG | + | chr3.1:75422676-75422695 | None:intergenic | 25.0% |
| !! | TAAGTTTGAATGTTTGTTGA+GGG | - | chr3.1:75420015-75420034 | MS.gene049383:CDS | 25.0% |
| !! | TCTTTTTCCTTATTCCAAAT+AGG | + | chr3.1:75423268-75423287 | None:intergenic | 25.0% |
| !! | TGTAAGCACTCTTTTATTAT+AGG | - | chr3.1:75421214-75421233 | MS.gene049383:intron | 25.0% |
| !! | TTGATAGATTTGAGATTCTT+TGG | - | chr3.1:75419881-75419900 | MS.gene049383:CDS | 25.0% |
| !! | TTTTTATGCATATGTTCCAA+GGG | + | chr3.1:75420260-75420279 | None:intergenic | 25.0% |
| !! | TTTTTCCTTATTCCAAATAG+GGG | + | chr3.1:75423266-75423285 | None:intergenic | 25.0% |
| !!! | AACTGCTCTAGTTTTTAAAA+TGG | - | chr3.1:75422072-75422091 | MS.gene049383:CDS | 25.0% |
| !!! | AAGAAACCTTAAACTTTTTC+TGG | + | chr3.1:75422594-75422613 | None:intergenic | 25.0% |
| !!! | ACTCCATTTATTTTGAGAAA+TGG | - | chr3.1:75421356-75421375 | MS.gene049383:intron | 25.0% |
| !!! | ATCCTTTATTGTTGTTGTTT+GGG | - | chr3.1:75420902-75420921 | MS.gene049383:CDS | 25.0% |
| !!! | CCATTCAATTAGTTTTATCA+TGG | - | chr3.1:75420398-75420417 | MS.gene049383:intron | 25.0% |
| !!! | CGCATTCATAGATTTTATTT+TGG | - | chr3.1:75420519-75420538 | MS.gene049383:intron | 25.0% |
| !!! | TAAAAGAGTGCTTACATATA+AGG | + | chr3.1:75421210-75421229 | None:intergenic | 25.0% |
| !!! | TTCATGTCTTATTTCTATCT+CGG | - | chr3.1:75422836-75422855 | MS.gene049383:intron | 25.0% |
| !!! | TTTTTTATGCATATGTTCCA+AGG | + | chr3.1:75420261-75420280 | None:intergenic | 25.0% |
| AAATATGTTGCTAACAACAC+AGG | - | chr3.1:75422166-75422185 | MS.gene049383:CDS | 30.0% | |
| AAATTCCAATTGGGAACTAT+CGG | - | chr3.1:75419614-75419633 | MS.gene049383:CDS | 30.0% | |
| AATATGTTGCTAACAACACA+GGG | - | chr3.1:75422167-75422186 | MS.gene049383:CDS | 30.0% | |
| AATTTATCCTATTAGTCCCT+TGG | - | chr3.1:75420241-75420260 | MS.gene049383:CDS | 30.0% | |
| AGTATGTTTCTCCAACTAAA+AGG | + | chr3.1:75422975-75422994 | None:intergenic | 30.0% | |
| ATATCAATCATGTCCATATC+AGG | - | chr3.1:75422627-75422646 | MS.gene049383:intron | 30.0% | |
| ATATGTCATCTCACATACAA+AGG | + | chr3.1:75422290-75422309 | None:intergenic | 30.0% | |
| ATTCTCAAGAATGCAAAAGT+GGG | + | chr3.1:75423036-75423055 | None:intergenic | 30.0% | |
| ATTCTGAATGGAATCTCTAT+TGG | - | chr3.1:75420802-75420821 | MS.gene049383:intron | 30.0% | |
| CATTTCATTTGAGCATGATT+TGG | - | chr3.1:75422439-75422458 | MS.gene049383:intron | 30.0% | |
| GAAGTACAATATTGAACAAG+AGG | - | chr3.1:75423239-75423258 | MS.gene049383:CDS | 30.0% | |
| GAGACTTGTGAATATCATAA+AGG | + | chr3.1:75421478-75421497 | None:intergenic | 30.0% | |
| TATGTCATCTCACATACAAA+GGG | + | chr3.1:75422289-75422308 | None:intergenic | 30.0% | |
| TGTGTCTTTGTCTTTCTAAA+TGG | + | chr3.1:75421158-75421177 | None:intergenic | 30.0% | |
| TTAGATATGTAGACGTCTAA+AGG | - | chr3.1:75420633-75420652 | MS.gene049383:intron | 30.0% | |
| TTCTGAATGGAATCTCTATT+GGG | - | chr3.1:75420803-75420822 | MS.gene049383:intron | 30.0% | |
| TTTAGTTGGAGAAACATACT+AGG | - | chr3.1:75422975-75422994 | MS.gene049383:intron | 30.0% | |
| ! | GAGAAACATACTAGGAATTT+TGG | - | chr3.1:75422983-75423002 | MS.gene049383:intron | 30.0% |
| ! | TACATTTTGTTCTCTTCATG+TGG | - | chr3.1:75420717-75420736 | MS.gene049383:intron | 30.0% |
| ! | TCTACATATCTAAGACAAGT+AGG | + | chr3.1:75420626-75420645 | None:intergenic | 30.0% |
| ! | TTTACCAATAAAAAAGCACG+AGG | + | chr3.1:75423128-75423147 | None:intergenic | 30.0% |
| ! | TTTTATATCCTACGCAGTTA+AGG | - | chr3.1:75420594-75420613 | MS.gene049383:intron | 30.0% |
| ! | TTTTCCTTATTCCAAATAGG+GGG | + | chr3.1:75423265-75423284 | None:intergenic | 30.0% |
| ! | TTTTTCTTGGCAAGAAATTC+AGG | - | chr3.1:75421020-75421039 | MS.gene049383:intron | 30.0% |
| !! | AACCTTAAACTTTTTCTGGA+TGG | + | chr3.1:75422590-75422609 | None:intergenic | 30.0% |
| !! | TTCTTTGGAATCACATCAAA+TGG | - | chr3.1:75419896-75419915 | MS.gene049383:CDS | 30.0% |
| !!! | ATGAGTTTTTTTTTCTTCCG+TGG | - | chr3.1:75419785-75419804 | MS.gene049383:intron | 30.0% |
| !!! | GACTTGCACTATTTTTTGTT+AGG | - | chr3.1:75419969-75419988 | MS.gene049383:CDS | 30.0% |
| !!! | TATTCCTCGTGCTTTTTTAT+TGG | - | chr3.1:75423121-75423140 | MS.gene049383:intron | 30.0% |
| AAATGCGACGAAAGAAACAT+AGG | + | chr3.1:75421591-75421610 | None:intergenic | 35.0% | |
| AATGCGACGAAAGAAACATA+GGG | + | chr3.1:75421590-75421609 | None:intergenic | 35.0% | |
| AATTCCGTGTACTATTCTAC+TGG | - | chr3.1:75420991-75421010 | MS.gene049383:intron | 35.0% | |
| ACACGTACAAAAAAAACACC+TGG | + | chr3.1:75420870-75420889 | None:intergenic | 35.0% | |
| ATATGTTCCAAGGGACTAAT+AGG | + | chr3.1:75420251-75420270 | None:intergenic | 35.0% | |
| ATCATGAAAAAGCAGATGCA+TGG | + | chr3.1:75419833-75419852 | None:intergenic | 35.0% | |
| ATCTCCAGTAGAATAGTACA+CGG | + | chr3.1:75420998-75421017 | None:intergenic | 35.0% | |
| ATGCATTCAGATGACAAAGT+TGG | - | chr3.1:75420964-75420983 | MS.gene049383:intron | 35.0% | |
| CACCATCCAGAAAAAGTTTA+AGG | - | chr3.1:75422585-75422604 | MS.gene049383:intron | 35.0% | |
| CCTGAAAACATTGGAAAACA+AGG | + | chr3.1:75423177-75423196 | None:intergenic | 35.0% | |
| GATTCTCAAGAATGCAAAAG+TGG | + | chr3.1:75423037-75423056 | None:intergenic | 35.0% | |
| GATTTACAACTCAATGCGTT+GGG | - | chr3.1:75421971-75421990 | MS.gene049383:intron | 35.0% | |
| GGGTTGTTAAATTTGAGTCT+GGG | - | chr3.1:75420823-75420842 | MS.gene049383:intron | 35.0% | |
| GTAGACGTCTAAAGGTTTAA+TGG | - | chr3.1:75420641-75420660 | MS.gene049383:intron | 35.0% | |
| GTCTTTGTCTTTCTAAATGG+AGG | + | chr3.1:75421155-75421174 | None:intergenic | 35.0% | |
| TAGGATTGCAAGAGAAAACT+GGG | + | chr3.1:75421921-75421940 | None:intergenic | 35.0% | |
| TATGATATTCACAAGTCTCG+AGG | - | chr3.1:75421479-75421498 | MS.gene049383:intron | 35.0% | |
| TCTTAAGACATGTCTTGTAC+TGG | - | chr3.1:75422923-75422942 | MS.gene049383:intron | 35.0% | |
| TGATTTACAACTCAATGCGT+TGG | - | chr3.1:75421970-75421989 | MS.gene049383:intron | 35.0% | |
| TGCCCAAACAACAACAATAA+AGG | + | chr3.1:75420907-75420926 | None:intergenic | 35.0% | |
| TGGGTTGTTAAATTTGAGTC+TGG | - | chr3.1:75420822-75420841 | MS.gene049383:intron | 35.0% | |
| TTTCCAAGACATCGTGTAAT+TGG | - | chr3.1:75421426-75421445 | MS.gene049383:intron | 35.0% | |
| ! | ACATATCTAAGACAAGTAGG+AGG | + | chr3.1:75420623-75420642 | None:intergenic | 35.0% |
| ! | AGAGTGCTTACATATAAGGA+CGG | + | chr3.1:75421206-75421225 | None:intergenic | 35.0% |
| ! | ATGGGATTTGGAATTCTGAA+TGG | - | chr3.1:75420790-75420809 | MS.gene049383:intron | 35.0% |
| ! | CTACTGGAGATTCTTTTTCT+TGG | - | chr3.1:75421007-75421026 | MS.gene049383:intron | 35.0% |
| ! | GTCGATTGTGATTTGTAACA+AGG | - | chr3.1:75419667-75419686 | MS.gene049383:CDS | 35.0% |
| ! | TCCATTTTCCACGTTAATGA+GGG | + | chr3.1:75423221-75423240 | None:intergenic | 35.0% |
| ! | TTCCATTTTCCACGTTAATG+AGG | + | chr3.1:75423222-75423241 | None:intergenic | 35.0% |
| ! | TTCTCTTGCAATCCTACTTT+TGG | - | chr3.1:75421925-75421944 | MS.gene049383:intron | 35.0% |
| ! | TTGTACGTGATCCTTTTAGT+TGG | - | chr3.1:75422961-75422980 | MS.gene049383:intron | 35.0% |
| !! | AACTTATCGTCCTTTTCAAG+TGG | + | chr3.1:75422489-75422508 | None:intergenic | 35.0% |
| !! | AATGTTTTCAGGCAAGAGAA+GGG | - | chr3.1:75423185-75423204 | MS.gene049383:CDS | 35.0% |
| !! | GCAAAGAGTGCTTACATATA+GGG | - | chr3.1:75421236-75421255 | MS.gene049383:intron | 35.0% |
| !! | TCTCTTGCAATCCTACTTTT+GGG | - | chr3.1:75421926-75421945 | MS.gene049383:intron | 35.0% |
| !!! | CCTTGTTTTCCAATGTTTTC+AGG | - | chr3.1:75423174-75423193 | MS.gene049383:CDS | 35.0% |
| !!! | GATTTTATTTTGGGCACAAG+AGG | - | chr3.1:75420529-75420548 | MS.gene049383:intron | 35.0% |
| AGTCTGGGTTTCAATTCTGT+TGG | - | chr3.1:75420838-75420857 | MS.gene049383:intron | 40.0% | |
| ATACATAAGCATCCCAACCA+TGG | + | chr3.1:75423012-75423031 | None:intergenic | 40.0% | |
| ATATGGTCCGGTTATCAACA+AGG | + | chr3.1:75422659-75422678 | None:intergenic | 40.0% | |
| CAAGTACACAACACAAGTGA+CGG | - | chr3.1:75422717-75422736 | MS.gene049383:intron | 40.0% | |
| CAATTCCAACACCCAAAAGT+AGG | + | chr3.1:75421940-75421959 | None:intergenic | 40.0% | |
| CAATTCTGTTGGATTCTACC+AGG | - | chr3.1:75420849-75420868 | MS.gene049383:CDS | 40.0% | |
| CAGCTACAACATTGACAAGT+TGG | - | chr3.1:75420683-75420702 | MS.gene049383:intron | 40.0% | |
| CTTCTCTTGCCTGAAAACAT+TGG | + | chr3.1:75423186-75423205 | None:intergenic | 40.0% | |
| GACATGTCTTAAGATGTCCA+AGG | + | chr3.1:75422917-75422936 | None:intergenic | 40.0% | |
| GCTATGTTGACCACTTGAAA+AGG | - | chr3.1:75422476-75422495 | MS.gene049383:intron | 40.0% | |
| GCTGCTTGATGTACAAATCA+TGG | + | chr3.1:75420144-75420163 | None:intergenic | 40.0% | |
| GTAGGATTGCAAGAGAAAAC+TGG | + | chr3.1:75421922-75421941 | None:intergenic | 40.0% | |
| TCACATACAAAGGGAAGCTT+AGG | + | chr3.1:75422280-75422299 | None:intergenic | 40.0% | |
| TCTTAAGATGTCCAAGGACT+TGG | + | chr3.1:75422911-75422930 | None:intergenic | 40.0% | |
| TTGCCAATTACACGATGTCT+TGG | + | chr3.1:75421432-75421451 | None:intergenic | 40.0% | |
| ! | AGAGTGCTTACATATAGGGA+CGG | - | chr3.1:75421240-75421259 | MS.gene049383:intron | 40.0% |
| ! | CCATTTTCCACGTTAATGAG+GGG | + | chr3.1:75423220-75423239 | None:intergenic | 40.0% |
| ! | GGGCTCTTTCTTATCTTTTC+TGG | - | chr3.1:75421991-75422010 | MS.gene049383:intron | 40.0% |
| ! | TGATTTGTACATCAAGCAGC+CGG | - | chr3.1:75420144-75420163 | MS.gene049383:intron | 40.0% |
| !! | ACTAGGAATTTTGGTAGCCA+TGG | - | chr3.1:75422992-75423011 | MS.gene049383:intron | 40.0% |
| !! | ATGTTTTCAGGCAAGAGAAG+GGG | - | chr3.1:75423186-75423205 | MS.gene049383:CDS | 40.0% |
| !! | CAATGTTTTCAGGCAAGAGA+AGG | - | chr3.1:75423184-75423203 | MS.gene049383:CDS | 40.0% |
| !! | GAATTTTGGTAGCCATGGTT+GGG | - | chr3.1:75422997-75423016 | MS.gene049383:intron | 40.0% |
| !! | GGCAAAGAGTGCTTACATAT+AGG | - | chr3.1:75421235-75421254 | MS.gene049383:intron | 40.0% |
| !! | GTTGATAACCGGACCATATT+TGG | - | chr3.1:75422660-75422679 | MS.gene049383:intron | 40.0% |
| !!! | ACATGTCTTGTACTGGCTTT+TGG | - | chr3.1:75422930-75422949 | MS.gene049383:intron | 40.0% |
| AACAAGGTTGCTGCCTGATA+TGG | + | chr3.1:75422643-75422662 | None:intergenic | 45.0% | |
| ACATGCAGTAACAGTCACCA+CGG | + | chr3.1:75419805-75419824 | None:intergenic | 45.0% | |
| ATCACCGCTTTCTGCTCAAA+AGG | + | chr3.1:75420772-75420791 | None:intergenic | 45.0% | |
| ATCTGATCCCCTCATTAACG+TGG | - | chr3.1:75423210-75423229 | MS.gene049383:CDS | 45.0% | |
| CCCCTCATTAACGTGGAAAA+TGG | - | chr3.1:75423217-75423236 | MS.gene049383:CDS | 45.0% | |
| GTGCTTACATATAAGGACGG+AGG | + | chr3.1:75421203-75421222 | None:intergenic | 45.0% | |
| TGCTTACATATAGGGACGGA+TGG | - | chr3.1:75421244-75421263 | MS.gene049383:intron | 45.0% | |
| TTTGAGCAGAAAGCGGTGAT+GGG | - | chr3.1:75420772-75420791 | MS.gene049383:intron | 45.0% | |
| ! | AAGATGTCCAAGGACTTGGT+AGG | + | chr3.1:75422907-75422926 | None:intergenic | 45.0% |
| ! | CAAGCCTTTTGAGCAGAAAG+CGG | - | chr3.1:75420765-75420784 | MS.gene049383:intron | 45.0% |
| ! | TTTTGAGCAGAAAGCGGTGA+TGG | - | chr3.1:75420771-75420790 | MS.gene049383:intron | 45.0% |
| !! | AGGAGTATCGAGATGCTTAC+TGG | - | chr3.1:75419989-75420008 | MS.gene049383:CDS | 45.0% |
| !! | GCAATCCTACTTTTGGGTGT+TGG | - | chr3.1:75421932-75421951 | MS.gene049383:intron | 45.0% |
| !! | GCAGCAACCTTGTTGATAAC+CGG | - | chr3.1:75422649-75422668 | MS.gene049383:intron | 45.0% |
| !! | GGAATTTTGGTAGCCATGGT+TGG | - | chr3.1:75422996-75423015 | MS.gene049383:intron | 45.0% |
| !! | AATAATACAAAATATTAAAA+AGG | - | chr3.1:75421822-75421841 | MS.gene049383:intron | 5.0% |
| !! | TACAATATATTAAATTATTA+AGG | - | chr3.1:75421721-75421740 | MS.gene049383:intron | 5.0% |
| AACTGCAGCACAGGCATTAC+AGG | - | chr3.1:75423073-75423092 | MS.gene049383:intron | 50.0% | |
| AGCACTTGAAACTGCAGCAC+AGG | - | chr3.1:75423064-75423083 | MS.gene049383:intron | 50.0% | |
| CCAGTTACCTACCAAGTCCT+TGG | - | chr3.1:75422897-75422916 | MS.gene049383:intron | 50.0% | |
| TGAACAAGAGGCCCCCTATT+TGG | - | chr3.1:75423251-75423270 | MS.gene049383:CDS | 50.0% | |
| ! | CCAAGGACTTGGTAGGTAAC+TGG | + | chr3.1:75422900-75422919 | None:intergenic | 50.0% |
| ! | GAGGCCCCCTATTTGGAATA+AGG | - | chr3.1:75423258-75423277 | MS.gene049383:CDS | 50.0% |
| ! | GTGCACCGATAGTTCCCAAT+TGG | + | chr3.1:75419622-75419641 | None:intergenic | 50.0% |
| !! | CAGAAAGCGGTGATGGGATT+TGG | - | chr3.1:75420778-75420797 | MS.gene049383:intron | 50.0% |
| CGGTGCACTGAGTCTATCTG+TGG | - | chr3.1:75419634-75419653 | MS.gene049383:CDS | 55.0% | |
| GGAGGAAGCCTTAACTGCGT+AGG | + | chr3.1:75420605-75420624 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 75419599 | 75423291 | 75419599 | ID=MS.gene049383 |
| chr3.1 | mRNA | 75419599 | 75423291 | 75419599 | ID=MS.gene049383.t1;Parent=MS.gene049383 |
| chr3.1 | exon | 75423171 | 75423291 | 75423171 | ID=MS.gene049383.t1.exon1;Parent=MS.gene049383.t1 |
| chr3.1 | CDS | 75423171 | 75423291 | 75423171 | ID=cds.MS.gene049383.t1;Parent=MS.gene049383.t1 |
| chr3.1 | exon | 75422020 | 75422204 | 75422020 | ID=MS.gene049383.t1.exon2;Parent=MS.gene049383.t1 |
| chr3.1 | CDS | 75422020 | 75422204 | 75422020 | ID=cds.MS.gene049383.t1;Parent=MS.gene049383.t1 |
| chr3.1 | exon | 75421849 | 75421916 | 75421849 | ID=MS.gene049383.t1.exon3;Parent=MS.gene049383.t1 |
| chr3.1 | CDS | 75421849 | 75421916 | 75421849 | ID=cds.MS.gene049383.t1;Parent=MS.gene049383.t1 |
| chr3.1 | exon | 75420848 | 75420980 | 75420848 | ID=MS.gene049383.t1.exon4;Parent=MS.gene049383.t1 |
| chr3.1 | CDS | 75420848 | 75420980 | 75420848 | ID=cds.MS.gene049383.t1;Parent=MS.gene049383.t1 |
| chr3.1 | exon | 75420152 | 75420313 | 75420152 | ID=MS.gene049383.t1.exon5;Parent=MS.gene049383.t1 |
| chr3.1 | CDS | 75420152 | 75420313 | 75420152 | ID=cds.MS.gene049383.t1;Parent=MS.gene049383.t1 |
| chr3.1 | exon | 75419796 | 75420068 | 75419796 | ID=MS.gene049383.t1.exon6;Parent=MS.gene049383.t1 |
| chr3.1 | CDS | 75419796 | 75420068 | 75419796 | ID=cds.MS.gene049383.t1;Parent=MS.gene049383.t1 |
| chr3.1 | exon | 75419599 | 75419694 | 75419599 | ID=MS.gene049383.t1.exon7;Parent=MS.gene049383.t1 |
| chr3.1 | CDS | 75419599 | 75419694 | 75419599 | ID=cds.MS.gene049383.t1;Parent=MS.gene049383.t1 |
| Gene Sequence |
| Protein sequence |
