AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41839

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41839.t1 MTR_7g087430 96.750 400 13 0 86 485 1 400 0.0 775
MS.gene41839.t1 MTR_7g087410 76.860 484 105 2 4 480 2 485 0.0 746
MS.gene41839.t1 MTR_7g087400 71.784 482 131 2 3 480 2 482 0.0 703
MS.gene41839.t1 MTR_6g027200 67.568 481 152 3 3 480 10 489 0.0 644
MS.gene41839.t1 MTR_7g087410 79.293 396 81 1 86 480 1 396 0.0 637
MS.gene41839.t1 MTR_7g087370 66.804 485 127 3 3 483 2 456 0.0 630
MS.gene41839.t1 MTR_6g027190 65.496 484 161 4 1 483 1 479 0.0 603
MS.gene41839.t1 MTR_5g032720 51.868 455 218 1 20 473 29 483 3.33e-164 473
MS.gene41839.t1 MTR_3g099700 50.106 473 233 2 8 479 29 499 9.25e-163 470
MS.gene41839.t1 MTR_5g032750 48.008 477 232 7 9 478 19 486 1.91e-152 443
MS.gene41839.t1 MTR_1g021740 46.809 470 250 0 2 471 10 479 2.62e-152 443
MS.gene41839.t1 MTR_8g069470 46.102 449 242 0 23 471 46 494 3.34e-149 436
MS.gene41839.t1 MTR_3g099720 46.374 455 243 1 7 461 22 475 4.43e-145 424
MS.gene41839.t1 MTR_2g022980 44.375 480 257 3 4 473 16 495 5.40e-143 419
MS.gene41839.t1 MTR_2g088400 45.188 478 260 2 2 477 26 503 7.88e-143 419
MS.gene41839.t1 MTR_4g048000 45.975 472 253 2 2 471 38 509 1.11e-142 419
MS.gene41839.t1 MTR_5g033100 46.667 465 245 1 7 471 39 500 3.01e-141 416
MS.gene41839.t1 MTR_1g100180 46.272 456 242 2 28 481 44 498 4.10e-141 415
MS.gene41839.t1 MTR_2g088400 44.266 436 241 2 2 435 26 461 3.61e-122 365
MS.gene41839.t1 MTR_6g047640 38.797 482 283 4 2 481 13 484 1.36e-115 349
MS.gene41839.t1 MTR_5g090290 42.266 459 264 1 28 485 47 505 5.49e-112 343
MS.gene41839.t1 MTR_6g047610 38.075 478 285 4 2 477 13 481 8.29e-112 339
MS.gene41839.t1 MTR_6g047640 36.515 482 275 5 2 481 13 465 8.93e-108 328
MS.gene41839.t1 MTR_6g047590 37.234 470 286 3 2 471 13 473 4.46e-102 314
MS.gene41839.t1 MTR_8g063590 40.583 446 261 3 28 470 54 498 4.03e-101 313
MS.gene41839.t1 MTR_6g081410 36.501 463 283 5 13 470 15 471 7.05e-92 288
MS.gene41839.t1 MTR_1g108810 36.000 450 286 2 27 474 34 483 4.29e-89 281
MS.gene41839.t1 MTR_6g081300 36.703 455 273 7 23 469 6 453 5.43e-89 280
MS.gene41839.t1 MTR_6g081780 36.069 463 281 7 13 468 15 469 1.92e-86 274
MS.gene41839.t1 MTR_7g082810 36.739 460 287 2 27 482 20 479 5.92e-86 272
MS.gene41839.t1 MTR_6g081240 35.808 458 273 6 8 461 5 445 6.34e-86 271
MS.gene41839.t1 MTR_6g066380 37.808 447 264 8 30 468 31 471 5.45e-85 270
MS.gene41839.t1 MTR_6g004220 35.129 464 291 4 13 472 13 470 5.56e-85 270
MS.gene41839.t1 MTR_8g106670 33.691 466 293 5 11 470 1 456 1.37e-82 264
MS.gene41839.t1 MTR_6g081390 35.177 452 287 4 23 470 8 457 2.11e-82 263
MS.gene41839.t1 MTR_6g081400 34.205 459 294 5 23 477 11 465 5.32e-82 262
MS.gene41839.t1 MTR_5g087930 37.182 433 248 4 52 481 51 462 5.66e-82 261
MS.gene41839.t1 MTR_2g078930 35.205 463 286 4 5 459 20 476 7.52e-82 262
MS.gene41839.t1 MTR_6g004220 34.879 453 285 4 13 461 20 466 1.84e-81 261
MS.gene41839.t1 MTR_6g081810 34.839 465 270 7 6 468 10 443 4.16e-80 256
MS.gene41839.t1 MTR_2g079020 34.979 466 292 4 2 459 8 470 5.29e-80 258
MS.gene41839.t1 MTR_2g078960 34.194 465 293 4 2 459 8 466 4.03e-77 249
MS.gene41839.t1 MTR_1g108840 33.830 470 300 5 6 468 18 483 2.84e-76 248
MS.gene41839.t1 MTR_2g078970 35.541 453 283 3 15 459 13 464 3.26e-76 247
MS.gene41839.t1 MTR_6g081310 35.780 436 261 4 49 468 18 450 1.98e-75 244
MS.gene41839.t1 MTR_1g108990 32.766 470 311 2 8 472 2 471 3.76e-72 236
MS.gene41839.t1 MTR_7g082800 35.492 386 248 1 86 470 1 386 6.59e-71 231
MS.gene41839.t1 MTR_1g109060 33.548 465 305 2 8 468 2 466 8.91e-69 228
MS.gene41839.t1 MTR_1g109060 33.118 465 306 3 8 468 2 465 6.11e-67 223
MS.gene41839.t1 MTR_5g090280 34.033 429 243 6 86 484 1 419 2.11e-63 212
MS.gene41839.t1 MTR_3g111020 28.330 473 321 6 4 466 27 491 6.38e-57 198
MS.gene41839.t1 MTR_6g004220 31.771 384 252 4 13 392 20 397 1.08e-54 189
MS.gene41839.t1 MTR_0039s0080 27.696 473 322 6 26 485 37 502 4.55e-52 184
MS.gene41839.t1 MTR_2g078990 37.113 291 180 2 171 459 4 293 3.59e-51 176
MS.gene41839.t1 MTR_1g101500 28.821 458 301 4 22 466 59 504 7.50e-51 181
MS.gene41839.t1 MTR_5g010830 27.468 466 325 5 7 466 47 505 3.70e-49 177
MS.gene41839.t1 MTR_5g067460 25.514 486 338 6 1 477 35 505 8.35e-48 173
MS.gene41839.t1 MTR_6g043810 26.004 473 322 7 27 477 33 499 8.90e-46 167
MS.gene41839.t1 MTR_6g043810 26.004 473 322 7 27 477 23 489 9.23e-46 167
MS.gene41839.t1 MTR_4g027920 25.696 467 340 4 22 485 151 613 7.25e-44 163
MS.gene41839.t1 MTR_2g079030 39.196 199 121 0 261 459 315 513 3.04e-38 147
MS.gene41839.t1 MTR_5g011540 25.896 502 326 8 4 485 33 508 2.79e-35 138
MS.gene41839.t1 MTR_6g004220 30.033 303 202 4 13 311 20 316 3.63e-35 134
MS.gene41839.t1 MTR_2g435930 25.346 434 293 5 57 466 49 475 1.07e-33 133
MS.gene41839.t1 MTR_6g088805 25.893 448 312 6 27 465 27 463 8.78e-33 130
MS.gene41839.t1 MTR_8g102430 25.813 461 307 8 13 465 9 442 1.12e-32 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41839.t1 AT1G33110 63.248 468 170 1 14 481 22 487 0.0 621
MS.gene41839.t1 AT1G33100 60.879 478 186 1 9 485 14 491 0.0 612
MS.gene41839.t1 AT1G33090 62.009 458 174 0 14 471 22 479 0.0 589
MS.gene41839.t1 AT1G33080 59.957 467 185 1 14 480 22 486 0.0 588
MS.gene41839.t1 AT1G33080 61.384 448 173 0 14 461 22 469 0.0 576
MS.gene41839.t1 AT1G33110 64.660 382 135 0 14 395 22 403 5.45e-180 510
MS.gene41839.t1 AT5G65380 51.957 460 220 1 15 473 24 483 2.24e-159 461
MS.gene41839.t1 AT5G44050 48.701 462 236 1 15 475 27 488 1.58e-155 451
MS.gene41839.t1 AT5G10420 47.992 473 245 1 7 478 17 489 4.48e-148 432
MS.gene41839.t1 AT1G47530 47.059 476 243 3 5 471 3 478 1.96e-147 430
MS.gene41839.t1 AT3G26590 44.672 488 253 1 1 471 1 488 1.99e-145 426
MS.gene41839.t1 AT4G00350 46.272 456 244 1 28 483 88 542 8.39e-144 423
MS.gene41839.t1 AT3G03620 45.610 467 253 1 13 479 22 487 3.99e-143 420
MS.gene41839.t1 AT3G03620 45.610 467 253 1 13 479 22 487 3.99e-143 420
MS.gene41839.t1 AT5G38030 43.636 495 262 1 1 478 1 495 1.71e-142 418
MS.gene41839.t1 AT5G17700 43.158 475 265 1 3 472 4 478 1.95e-142 418
MS.gene41839.t1 AT5G17700 43.158 475 265 1 3 472 4 478 1.95e-142 418
MS.gene41839.t1 AT1G61890 44.672 488 255 4 1 473 6 493 2.29e-141 416
MS.gene41839.t1 AT1G23300 44.421 484 264 2 2 481 15 497 8.11e-141 415
MS.gene41839.t1 AT1G11670 45.417 480 254 3 2 476 23 499 8.61e-141 414
MS.gene41839.t1 AT1G12950 44.035 461 258 0 21 481 60 520 2.41e-139 411
MS.gene41839.t1 AT3G21690 48.026 456 236 1 19 473 43 498 9.75e-139 409
MS.gene41839.t1 AT1G61890 45.073 477 247 4 1 462 6 482 1.08e-137 406
MS.gene41839.t1 AT4G25640 44.215 484 258 3 1 484 14 485 5.79e-132 391
MS.gene41839.t1 AT4G25640 44.581 489 256 4 6 484 2 485 8.64e-132 392
MS.gene41839.t1 AT4G21910 44.111 467 254 4 16 476 39 504 1.27e-131 391
MS.gene41839.t1 AT4G21910 44.111 467 254 4 16 476 39 504 1.27e-131 391
MS.gene41839.t1 AT4G21910 45.011 451 245 3 28 476 57 506 7.83e-131 389
MS.gene41839.t1 AT4G21910 45.011 451 245 3 28 476 57 506 7.83e-131 389
MS.gene41839.t1 AT1G47530 48.705 386 198 0 86 471 1 386 1.00e-127 377
MS.gene41839.t1 AT4G21903 44.884 430 235 2 48 476 73 501 2.42e-126 377
MS.gene41839.t1 AT3G26590 47.150 386 204 0 86 471 1 386 7.41e-126 372
MS.gene41839.t1 AT4G21903 44.575 424 233 2 48 470 73 495 1.73e-121 365
MS.gene41839.t1 AT1G61890 43.077 455 244 4 1 440 6 460 2.34e-120 361
MS.gene41839.t1 AT4G21903 45.408 392 213 1 86 476 1 392 2.16e-119 355
MS.gene41839.t1 AT4G25640 44.419 430 231 2 1 430 14 435 3.53e-119 357
MS.gene41839.t1 AT3G59030 40.456 482 272 6 1 469 14 493 5.20e-113 343
MS.gene41839.t1 AT5G17700 41.709 398 227 1 3 395 4 401 2.90e-112 338
MS.gene41839.t1 AT5G52450 36.478 477 291 5 2 475 7 474 6.55e-92 288
MS.gene41839.t1 AT2G34360 35.611 483 283 9 11 485 13 475 1.16e-89 282
MS.gene41839.t1 AT1G73700 36.674 469 283 5 16 477 13 474 3.94e-87 275
MS.gene41839.t1 AT3G59030 37.469 403 241 3 1 392 14 416 5.27e-82 260
MS.gene41839.t1 AT1G71140 33.546 471 302 6 4 468 2 467 8.55e-78 251
MS.gene41839.t1 AT2G34360 32.780 482 256 7 11 485 13 433 1.21e-77 249
MS.gene41839.t1 AT1G15150 34.676 447 281 4 28 468 31 472 3.55e-76 247
MS.gene41839.t1 AT1G15160 32.505 483 300 6 1 468 1 472 2.34e-73 240
MS.gene41839.t1 AT1G66780 33.800 429 275 4 45 468 52 476 2.46e-72 237
MS.gene41839.t1 AT1G15170 34.086 443 289 2 28 468 34 475 2.81e-72 237
MS.gene41839.t1 AT1G64820 31.866 477 309 6 1 468 1 470 7.77e-72 236
MS.gene41839.t1 AT1G66760 32.473 465 300 6 9 468 14 469 8.43e-70 230
MS.gene41839.t1 AT3G23560 33.693 463 296 6 4 459 13 471 1.89e-68 227
MS.gene41839.t1 AT1G66760 32.174 460 298 6 9 463 14 464 1.07e-67 224
MS.gene41839.t1 AT2G04080 33.049 469 291 9 15 468 8 468 1.46e-67 224
MS.gene41839.t1 AT3G23550 31.263 467 302 5 2 459 7 463 1.83e-67 224
MS.gene41839.t1 AT2G04070 33.548 465 294 8 15 468 8 468 5.35e-66 220
MS.gene41839.t1 AT2G04040 33.632 446 287 7 28 468 27 468 9.44e-66 219
MS.gene41839.t1 AT2G04080 32.759 464 291 8 15 464 8 464 1.63e-65 219
MS.gene41839.t1 AT1G15180 33.781 447 285 4 28 468 35 476 2.03e-65 219
MS.gene41839.t1 AT2G04050 32.409 469 294 9 15 468 8 468 2.05e-62 211
MS.gene41839.t1 AT1G15150 34.463 354 229 2 117 468 4 356 7.35e-62 206
MS.gene41839.t1 AT1G15170 34.561 353 225 3 121 468 5 356 1.49e-61 205
MS.gene41839.t1 AT2G04100 31.920 448 292 6 28 468 30 471 8.00e-60 204
MS.gene41839.t1 AT2G04090 31.333 450 292 6 28 468 30 471 2.62e-58 200
MS.gene41839.t1 AT2G04100 31.828 443 289 6 28 463 30 466 3.63e-58 199
MS.gene41839.t1 AT3G23560 33.081 396 254 6 4 392 13 404 6.68e-50 176
MS.gene41839.t1 AT1G66760 32.544 338 223 3 129 463 1 336 1.66e-49 173
MS.gene41839.t1 AT1G58340 25.911 494 346 6 6 485 29 516 3.76e-46 168
MS.gene41839.t1 AT2G38510 25.870 460 324 7 35 484 13 465 1.31e-45 166
MS.gene41839.t1 AT1G66760 29.820 389 259 6 9 392 14 393 2.19e-43 158
MS.gene41839.t1 AT1G71870 25.210 476 332 7 27 480 23 496 1.79e-41 155
MS.gene41839.t1 AT4G29140 26.483 472 327 7 6 466 33 495 7.97e-41 154
MS.gene41839.t1 AT5G49130 25.311 482 341 6 6 470 4 483 5.03e-37 142
MS.gene41839.t1 AT5G19700 26.096 456 316 6 22 466 30 475 4.83e-36 140
MS.gene41839.t1 AT4G23030 28.218 404 277 5 82 478 87 484 8.93e-35 136
MS.gene41839.t1 AT5G52050 25.499 451 297 5 38 465 45 479 1.00e-34 136
MS.gene41839.t1 AT1G15180 31.317 281 179 5 121 392 5 280 1.05e-32 129
MS.gene41839.t1 AT4G22790 26.778 478 317 11 8 465 6 470 2.83e-28 117
MS.gene41839.t1 AT2G04066 38.793 116 71 0 353 468 48 163 6.45e-23 95.9

Find 103 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGCAAACTTTGCATCTT+TGG 0.128532 7.3:+21595494 None:intergenic
CAAATGATTGAGTGATAATT+TGG 0.160735 7.3:+21599152 None:intergenic
AATATAAGTTGACCAATATT+TGG 0.173372 7.3:+21597152 None:intergenic
TTTCAATAAGTTTGGCCTTA+TGG 0.194756 7.3:-21597178 MS.gene41839:CDS
TTTCTTCAGGTTTCATGTTA+TGG 0.213532 7.3:-21597043 MS.gene41839:intron
CTTCCTTTCTGTAGGGTATA+TGG 0.215347 7.3:-21594996 MS.gene41839:intron
TCATCTAGCAACTTCTTCTT+TGG 0.229856 7.3:+21599280 None:intergenic
CAATCATTTGTTGGTCATAT+TGG 0.249494 7.3:-21599139 MS.gene41839:CDS
TGGCCTAGGATAATTAAAAT+TGG 0.258540 7.3:+21597416 None:intergenic
GTCAAGCTTTCCCTTTCTTC+AGG 0.265362 7.3:-21597056 MS.gene41839:CDS
GCAATAAAAGCAAACAAAAT+TGG 0.278019 7.3:+21597344 None:intergenic
TGCAATGATTTCAATAAGTT+TGG 0.280321 7.3:-21597186 MS.gene41839:CDS
CTGTTCATGTATTACTCTCT+TGG 0.280963 7.3:-21597244 MS.gene41839:CDS
GCCTTATGGATTCCAAATAT+TGG 0.286497 7.3:-21597164 MS.gene41839:CDS
GATGATATCACTTGGTTTCA+TGG 0.286945 7.3:-21596099 MS.gene41839:CDS
ATTCCTGTTGGGATTGTTCT+TGG 0.302775 7.3:-21595120 MS.gene41839:CDS
AGATGAAAATCTTGTGAATA+TGG 0.308578 7.3:+21599183 None:intergenic
TAGATTCGTCAATGGCATTC+TGG 0.316111 7.3:-21599071 MS.gene41839:intron
GTCCTTACATCATTCACAAT+TGG 0.324954 7.3:-21595462 MS.gene41839:CDS
TAGCAGGAACCATTGGTTAT+TGG 0.337312 7.3:-21597373 MS.gene41839:CDS
GCATACGGTGCAAAAGAATA+TGG 0.338654 7.3:-21597524 MS.gene41839:CDS
GGAAATGCAGGAGTTGCTAT+TGG 0.356337 7.3:-21595201 MS.gene41839:intron
AAGCTAATGTGGGTGGTTGC+AGG 0.359138 7.3:-21599211 MS.gene41839:CDS
CTAGGTTGTTATTACATCAT+AGG 0.372662 7.3:-21595144 MS.gene41839:CDS
CTTGTGCTATGGTTTCATCT+TGG 0.374871 7.3:+21597396 None:intergenic
ATATGGATTGGTATGTTGTT+TGG 0.377225 7.3:-21594979 MS.gene41839:CDS
TTTGTGACTGAAGGAATGTT+TGG 0.384067 7.3:+21597309 None:intergenic
ATTATCACTCAATCATTTGT+TGG 0.393308 7.3:-21599148 MS.gene41839:CDS
TCGTATTAATAAGTGGTCTA+AGG 0.405797 7.3:-21594556 MS.gene41839:CDS
GATGCAACTGTTTCATGATC+AGG 0.408848 7.3:+21594528 None:intergenic
TAACAATGAAAATCAAGCTT+GGG 0.412212 7.3:-21597217 MS.gene41839:CDS
CTATGGTTTCATCTTGGCCT+AGG 0.413225 7.3:+21597402 None:intergenic
GAACATTATTATTGCATACT+TGG 0.415000 7.3:-21597282 MS.gene41839:CDS
ACCAATATTTGGAATCCATA+AGG 0.415630 7.3:+21597163 None:intergenic
TCCTTACATCATTCACAATT+GGG 0.421733 7.3:-21595461 MS.gene41839:CDS
TAATCAGCTACAAAACTGAT+TGG 0.436530 7.3:-21594927 MS.gene41839:CDS
TGAGGCCACGTCCTTGTTTG+TGG 0.438464 7.3:+21595383 None:intergenic
CAAAACTGATTGGGACAAAC+AGG 0.440943 7.3:-21594917 MS.gene41839:intron
TTTCTGTAGGGTATATGGAT+TGG 0.444215 7.3:-21594991 MS.gene41839:intron
ACATCATAGGTATTCCTGTT+GGG 0.447520 7.3:-21595131 MS.gene41839:CDS
AAAATCAAGCTTGGGATTGT+TGG 0.452702 7.3:-21597209 MS.gene41839:CDS
TGCAAAAGAATATGGAATGA+TGG 0.459585 7.3:-21597516 MS.gene41839:CDS
ATTTACAGTCTCAACATCAA+TGG 0.464897 7.3:-21596131 MS.gene41839:intron
GCAGGAGTTGCTATTGGAGC+AGG 0.468595 7.3:-21595195 MS.gene41839:intron
GAAAATCTTGTGAATATGGC+TGG 0.474697 7.3:+21599187 None:intergenic
GTTCTTGTTAGATTCGTCAA+TGG 0.477427 7.3:-21599079 MS.gene41839:CDS
GTGGTTGGTGTTCTGATACT+TGG 0.477864 7.3:-21597121 MS.gene41839:CDS
GGTTCCTGCTACTTGTGCTA+TGG 0.479039 7.3:+21597385 None:intergenic
AGAAGAAGAAGAATTGTCAT+TGG 0.479669 7.3:-21599257 MS.gene41839:CDS
TTGATATTTGTAGTTAGGAA+TGG 0.480094 7.3:-21597576 MS.gene41839:intron
TTAACAATGAAAATCAAGCT+TGG 0.486475 7.3:-21597218 MS.gene41839:CDS
TAACATGAAACCTGAAGAAA+GGG 0.491734 7.3:+21597046 None:intergenic
GAAAGGGAAAGCTTGACAAC+AGG 0.493053 7.3:+21597062 None:intergenic
GAGTATATCTTCAAAGATCA+TGG 0.493939 7.3:-21597493 MS.gene41839:CDS
ATAACATGAAACCTGAAGAA+AGG 0.497739 7.3:+21597045 None:intergenic
AAATTGATGCTCTATCCATA+TGG 0.498228 7.3:-21596320 MS.gene41839:intron
TTGTGACTGAAGGAATGTTT+GGG 0.500082 7.3:+21597310 None:intergenic
CTTAATTTGCAGTGTTAGAG+TGG 0.505711 7.3:-21595541 MS.gene41839:intron
TACTCACCTTGACTTGCAAA+TGG 0.506891 7.3:+21595088 None:intergenic
TACATCATAGGTATTCCTGT+TGG 0.507006 7.3:-21595132 MS.gene41839:CDS
TTACCAAGAACAATCCCAAC+AGG 0.507831 7.3:+21595117 None:intergenic
GTTAGAGTGGCAAATGAGCT+TGG 0.511731 7.3:-21595528 MS.gene41839:CDS
ACCCAATTGTGAATGATGTA+AGG 0.512296 7.3:+21595460 None:intergenic
AGTATAGAAACTGCTAATAG+AGG 0.517489 7.3:+21595342 None:intergenic
AATCAGCTACAAAACTGATT+GGG 0.519497 7.3:-21594926 MS.gene41839:CDS
GCACAAGTAGCAGGAACCAT+TGG 0.529388 7.3:-21597380 MS.gene41839:CDS
GAATGTTTGGGTAGTGAATG+AGG 0.529494 7.3:+21597322 None:intergenic
CTCGGAATCGTATTAATAAG+TGG 0.530392 7.3:-21594563 MS.gene41839:CDS
AGTTTACCATTTGCAAGTCA+AGG 0.535482 7.3:-21595094 MS.gene41839:intron
GTGGCAAATGAGCTTGGAAA+AGG 0.536358 7.3:-21595522 MS.gene41839:CDS
GTTAGGAATGGCTAGTGCAT+TGG 0.537339 7.3:-21597564 MS.gene41839:CDS
TTATATTTATTACATGTGGT+TGG 0.539646 7.3:-21597136 MS.gene41839:CDS
ACAGTCTCAACATCAATGGA+TGG 0.543286 7.3:-21596127 MS.gene41839:intron
GCAAAAGAATATGGAATGAT+GGG 0.553514 7.3:-21597515 MS.gene41839:CDS
ATGCAACTGTTTCATGATCA+GGG 0.553642 7.3:+21594529 None:intergenic
CAACTTATATTTATTACATG+TGG 0.553817 7.3:-21597140 MS.gene41839:CDS
ATGTGCAGGTAACTATTGCT+CGG 0.559960 7.3:-21594581 MS.gene41839:intron
TGTTCCTGCTTTGTGACTGA+AGG 0.561666 7.3:+21597300 None:intergenic
GAAGGAAAATTCAATATGGA+GGG 0.561732 7.3:-21599313 None:intergenic
AGTGTTCAACCTGTACTCTC+AGG 0.564512 7.3:-21595312 MS.gene41839:intron
GAAACCATAGCACAAGTAGC+AGG 0.568631 7.3:-21597389 MS.gene41839:CDS
TGGTGTTCTGATACTTGGAA+AGG 0.574232 7.3:-21597116 MS.gene41839:CDS
GAATTAGTACCTGAGAGTAC+AGG 0.575479 7.3:+21595303 None:intergenic
AAGGACGTGGCCTCAGCTGT+TGG 0.580851 7.3:-21595375 MS.gene41839:CDS
TGTCATTGGTGAAGAAGATG+TGG 0.581561 7.3:-21599243 MS.gene41839:CDS
CAGTCTCAACATCAATGGAT+GGG 0.581906 7.3:-21596126 MS.gene41839:CDS
GGAGTTGTGAAGATGAATAG+TGG 0.583244 7.3:+21597437 None:intergenic
CATTCCTTCAGTCACAAAGC+AGG 0.586851 7.3:-21597304 MS.gene41839:CDS
TGGAATTGACCAATAACCAA+TGG 0.593039 7.3:+21597364 None:intergenic
AGTGCATTGGCAACACTATG+TGG 0.597511 7.3:-21597551 MS.gene41839:CDS
ACACTATGTGGACAAGCATA+CGG 0.598328 7.3:-21597539 MS.gene41839:CDS
TATTAATAAGTGGTCTAAGG+TGG 0.600657 7.3:-21594553 MS.gene41839:CDS
GGAAAGAGAGCAAGCTAATG+TGG 0.601094 7.3:-21599222 MS.gene41839:CDS
CTATGATGTAATAACAACCT+AGG 0.609684 7.3:+21595145 None:intergenic
ATTGTAGCATATGTGAACCT+AGG 0.624206 7.3:-21595162 MS.gene41839:CDS
TTGGTTTCATGGCTGCAGCA+AGG 0.634709 7.3:-21596088 MS.gene41839:intron
CAGGAGTTGCTATTGGAGCA+GGG 0.643737 7.3:-21595194 MS.gene41839:CDS
TGACAAATCACCAACAGCTG+AGG 0.652453 7.3:+21595365 None:intergenic
TGGGAAATGATGATATCACT+TGG 0.667441 7.3:-21596107 MS.gene41839:CDS
AGAGAGCAAGCTAATGTGGG+TGG 0.672151 7.3:-21599218 MS.gene41839:CDS
GAAAGAGAGCAAGCTAATGT+GGG 0.682728 7.3:-21599221 MS.gene41839:CDS
TCTTGAGCTTTGGTACAACA+CGG 0.696417 7.3:-21596385 MS.gene41839:CDS
GAGTTGCTATTGGAGCAGGG+TGG 0.770495 7.3:-21595191 MS.gene41839:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTTTTATTATTAT+TGG + chr7.3:21594975-21594994 None:intergenic 0.0%
!! AGATAGAAAAATATATAAAT+AGG - chr7.3:21595372-21595391 MS.gene41839:CDS 10.0%
!! TAAAGCAAAAAAAAAAAAAA+TGG + chr7.3:21598942-21598961 None:intergenic 10.0%
!! TATCATCAATATAAATATTT+GGG + chr7.3:21595141-21595160 None:intergenic 10.0%
!! TTATCATCAATATAAATATT+TGG + chr7.3:21595142-21595161 None:intergenic 10.0%
!! TTATGATAAATTACTTTAAA+TGG + chr7.3:21595651-21595670 None:intergenic 10.0%
!!! AACATTTAACATTTTTTTTT+TGG + chr7.3:21597379-21597398 None:intergenic 10.0%
!!! TTTAATTAACAAATGTTTTT+TGG + chr7.3:21595414-21595433 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGCTTTAT+TGG - chr7.3:21598943-21598962 MS.gene41839:intron 10.0%
!! AAAAAAAAAAAATTAGTGTG+TGG - chr7.3:21595716-21595735 MS.gene41839:intron 15.0%
!! AAATATCTTCGTATAATTTA+TGG + chr7.3:21598063-21598082 None:intergenic 15.0%
!! AAATGTTAATGTTAATTTCA+TGG + chr7.3:21598594-21598613 None:intergenic 15.0%
!! AAGTTTCAAAAATAATCATA+TGG - chr7.3:21595091-21595110 MS.gene41839:intron 15.0%
!! AGTTTCAAAAATAATCATAT+GGG - chr7.3:21595092-21595111 MS.gene41839:intron 15.0%
!! ATAAATTGATATTTGTAGTT+AGG - chr7.3:21596235-21596254 MS.gene41839:intron 15.0%
!! ATAAGAAAAATAAAAACAGA+AGG + chr7.3:21598383-21598402 None:intergenic 15.0%
!!! AATAAAAACAAAAAAGCATA+GGG - chr7.3:21595327-21595346 MS.gene41839:CDS 15.0%
!!! AATTATGTTGTTTTTTACTA+TGG - chr7.3:21598232-21598251 MS.gene41839:intron 15.0%
!!! ACACACTAATTTTTTTTTTT+TGG + chr7.3:21595717-21595736 None:intergenic 15.0%
!!! ATTCTCTTATTTTATGTTTT+CGG + chr7.3:21595786-21595805 None:intergenic 15.0%
!!! GTTTTAGACAATAAATAAAT+AGG - chr7.3:21595190-21595209 MS.gene41839:CDS 15.0%
!!! TAATAAAAACAAAAAAGCAT+AGG - chr7.3:21595326-21595345 MS.gene41839:CDS 15.0%
!!! TAGTTTTAAAAGAAAAACAT+TGG - chr7.3:21596842-21596861 MS.gene41839:intron 15.0%
!!! TGAAATTAACATTAACATTT+TGG - chr7.3:21598594-21598613 MS.gene41839:intron 15.0%
!! AAATTAGACCATGAATATTA+GGG - chr7.3:21595441-21595460 MS.gene41839:CDS 20.0%
!! AAGTAGATTTAAAAGGTAAA+AGG - chr7.3:21596132-21596151 MS.gene41839:intron 20.0%
!! ACATAACATAATGTATGAAA+AGG + chr7.3:21596911-21596930 None:intergenic 20.0%
!! ATAAACTTATGTCACATTAT+TGG + chr7.3:21595276-21595295 None:intergenic 20.0%
!! ATTAATACAACCAAAAACAT+AGG + chr7.3:21597578-21597597 None:intergenic 20.0%
!! CAACTTATATTTATTACATG+TGG - chr7.3:21596676-21596695 MS.gene41839:intron 20.0%
!! CATAACATAATGTATGAAAA+GGG + chr7.3:21596910-21596929 None:intergenic 20.0%
!! CATTTAACGTAATTCTTAAA+CGG + chr7.3:21596986-21597005 None:intergenic 20.0%
!! GTGAAATGAATAAGAAAATT+GGG - chr7.3:21595066-21595085 MS.gene41839:intron 20.0%
!! GTTGTATAATTTCAAACTAT+AGG - chr7.3:21597026-21597045 MS.gene41839:intron 20.0%
!! TAAAAAACAACATAATTGTG+TGG + chr7.3:21598229-21598248 None:intergenic 20.0%
!! TAAATTAGACCATGAATATT+AGG - chr7.3:21595440-21595459 MS.gene41839:CDS 20.0%
!! TAACTATAATATGCTTAAGA+TGG + chr7.3:21599004-21599023 None:intergenic 20.0%
!! TCATACATTATGTTATGTTA+CGG - chr7.3:21596913-21596932 MS.gene41839:intron 20.0%
!! TGAGTTAAAGTAGATTTAAA+AGG - chr7.3:21596125-21596144 MS.gene41839:CDS 20.0%
!! TGTGAAATGAATAAGAAAAT+TGG - chr7.3:21595065-21595084 MS.gene41839:intron 20.0%
!! TTAATACAACCAAAAACATA+GGG + chr7.3:21597577-21597596 None:intergenic 20.0%
!! TTAGTTATCATAACTACAAA+GGG - chr7.3:21597251-21597270 MS.gene41839:CDS 20.0%
!! TTATATTTATTACATGTGGT+TGG - chr7.3:21596680-21596699 MS.gene41839:intron 20.0%
!! TTTATAAAAGCCATTAGTAT+TGG + chr7.3:21596220-21596239 None:intergenic 20.0%
!! TTTGAATATTGTGATAGTAT+AGG + chr7.3:21596166-21596185 None:intergenic 20.0%
!!! AAAAAACATGTTTCTTTTTG+AGG - chr7.3:21594879-21594898 MS.gene41839:intron 20.0%
!!! AAAAACATGTTTCTTTTTGA+GGG - chr7.3:21594880-21594899 MS.gene41839:intron 20.0%
!!! AACATTTTTTTATGATTCAG+TGG - chr7.3:21599139-21599158 MS.gene41839:CDS 20.0%
!!! AAGAATTTAATTTTCATGCA+CGG - chr7.3:21599036-21599055 MS.gene41839:intron 20.0%
!!! AATATAAGTTGACCAATATT+TGG + chr7.3:21596667-21596686 None:intergenic 20.0%
!!! AATCAAGCTATTTTGTTTAT+TGG + chr7.3:21597619-21597638 None:intergenic 20.0%
!!! AATTTTAACCCTAATATTCA+TGG + chr7.3:21595452-21595471 None:intergenic 20.0%
!!! ATAAAACTCAGTTAATTTGT+TGG + chr7.3:21596010-21596029 None:intergenic 20.0%
!!! CATAAGTTTATTTCTTTTGA+AGG - chr7.3:21595285-21595304 MS.gene41839:intron 20.0%
!!! GGTGGATTTTATATATTTTA+AGG - chr7.3:21598120-21598139 MS.gene41839:intron 20.0%
!!! TAATTTATGGACTAAATTGA+TGG + chr7.3:21598050-21598069 None:intergenic 20.0%
!!! TATGTATGTGATTTTATAAG+TGG - chr7.3:21599101-21599120 MS.gene41839:CDS 20.0%
!!! TTCTCTAAGATATTTCTTTT+TGG - chr7.3:21596806-21596825 MS.gene41839:intron 20.0%
! AAATATTTGGGAAGATAGAA+AGG + chr7.3:21595129-21595148 None:intergenic 25.0%
! AATTAAGAAAGGCAAAAAGT+TGG + chr7.3:21598262-21598281 None:intergenic 25.0%
! AGATATATAGTAGTGTCTAA+TGG + chr7.3:21598799-21598818 None:intergenic 25.0%
! AGATGAAAATCTTGTGAATA+TGG + chr7.3:21594636-21594655 None:intergenic 25.0%
! AGTGGAAAAATAGAGAATTT+AGG - chr7.3:21595555-21595574 MS.gene41839:intron 25.0%
! ATAATATGCTTAAGATGGAA+TGG + chr7.3:21598999-21599018 None:intergenic 25.0%
! ATGAAATGTGAATATGCAAA+AGG + chr7.3:21597526-21597545 None:intergenic 25.0%
! ATTATCACTCAATCATTTGT+TGG - chr7.3:21594668-21594687 MS.gene41839:intron 25.0%
! CAAATGATTGAGTGATAATT+TGG + chr7.3:21594667-21594686 None:intergenic 25.0%
! CATAAAAAGTTCGATCAAAT+TGG - chr7.3:21598163-21598182 MS.gene41839:intron 25.0%
! CTTAATAGTTGAGACTAAAT+TGG - chr7.3:21598099-21598118 MS.gene41839:intron 25.0%
! GAACATTATTATTGCATACT+TGG - chr7.3:21596534-21596553 MS.gene41839:intron 25.0%
! GCAATAAAAGCAAACAAAAT+TGG + chr7.3:21596475-21596494 None:intergenic 25.0%
! GTAGTTATGATAACTAACTA+TGG + chr7.3:21597248-21597267 None:intergenic 25.0%
! GTGGAAAAATAGAGAATTTA+GGG - chr7.3:21595556-21595575 MS.gene41839:intron 25.0%
! GTTAGTTATCATAACTACAA+AGG - chr7.3:21597250-21597269 MS.gene41839:CDS 25.0%
! TAACAATGAAAATCAAGCTT+GGG - chr7.3:21596599-21596618 MS.gene41839:intron 25.0%
! TGCAATGATTTCAATAAGTT+TGG - chr7.3:21596630-21596649 MS.gene41839:intron 25.0%
! TTAACAATGAAAATCAAGCT+TGG - chr7.3:21596598-21596617 MS.gene41839:intron 25.0%
! TTACATTGCTTCTTTATTAG+TGG - chr7.3:21598970-21598989 MS.gene41839:intron 25.0%
! TTGATATTTGTAGTTAGGAA+TGG - chr7.3:21596240-21596259 MS.gene41839:intron 25.0%
! TTGGAAAAAAGTTGAAGATT+CGG - chr7.3:21594911-21594930 MS.gene41839:intron 25.0%
! TTGTATTCTTAGTTTCTTTG+AGG + chr7.3:21595879-21595898 None:intergenic 25.0%
!! AATGTTGTAGTCATTGTTTT+TGG - chr7.3:21597924-21597943 MS.gene41839:intron 25.0%
!! ATAATTATGTTTTCATGTGC+AGG - chr7.3:21599221-21599240 MS.gene41839:CDS 25.0%
!! CTAGTGGATCTAAAATAAAA+GGG - chr7.3:21594850-21594869 MS.gene41839:intron 25.0%
!! TAGTGGATCTAAAATAAAAG+GGG - chr7.3:21594851-21594870 MS.gene41839:intron 25.0%
!! TATTGACTATACTCGAAATA+TGG - chr7.3:21596027-21596046 MS.gene41839:intron 25.0%
!! TCTAGTGGATCTAAAATAAA+AGG - chr7.3:21594849-21594868 MS.gene41839:intron 25.0%
!! TGATTTGAAGCAAATACTAT+TGG - chr7.3:21597004-21597023 MS.gene41839:intron 25.0%
!! TTCACAAGATTTTCATCTTT+TGG - chr7.3:21594638-21594657 MS.gene41839:intron 25.0%
!! TTTTATATACTTTAGCGAGT+AGG + chr7.3:21597999-21598018 None:intergenic 25.0%
!!! ACTCCAATTTTAATTATCCT+AGG - chr7.3:21596397-21596416 MS.gene41839:intron 25.0%
!!! CTTTTTGAGGGAATTTTTTT+TGG - chr7.3:21594892-21594911 MS.gene41839:intron 25.0%
!!! TATTTTTGTGATGATTCTAG+TGG - chr7.3:21594834-21594853 MS.gene41839:intron 25.0%
!!! TCATATTTTTACCACAAACA+AGG - chr7.3:21598422-21598441 MS.gene41839:intron 25.0%
!!! TTTTAGCTTTACAAGATCTT+TGG - chr7.3:21596731-21596750 MS.gene41839:intron 25.0%
AAAAAGTTCGATCAAATTGG+TGG - chr7.3:21598166-21598185 MS.gene41839:intron 30.0%
AAATTGATGCTCTATCCATA+TGG - chr7.3:21597496-21597515 MS.gene41839:CDS 30.0%
AACAAACTTGTGCTAATCTA+TGG + chr7.3:21597125-21597144 None:intergenic 30.0%
AACAATAGAGTTTAGTCGAA+AGG + chr7.3:21595984-21596003 None:intergenic 30.0%
AATAGTTGAGACTAAATTGG+TGG - chr7.3:21598102-21598121 MS.gene41839:intron 30.0%
AATCAGCTACAAAACTGATT+GGG - chr7.3:21598890-21598909 MS.gene41839:intron 30.0%
ACTCTAAGTGATTAACTAAG+AGG - chr7.3:21595915-21595934 MS.gene41839:intron 30.0%
AGAAGAAGAAGAATTGTCAT+TGG - chr7.3:21594559-21594578 MS.gene41839:CDS 30.0%
AGAGGTAAACATAGGATAAA+TGG + chr7.3:21596960-21596979 None:intergenic 30.0%
AGTACAACTCAGATGATAAA+AGG + chr7.3:21597872-21597891 None:intergenic 30.0%
AGTATAGAAACTGCTAATAG+AGG + chr7.3:21598477-21598496 None:intergenic 30.0%
AGTCTCAACTATTAAGATAC+AGG + chr7.3:21598095-21598114 None:intergenic 30.0%
ATAACATGAAACCTGAAGAA+AGG + chr7.3:21596774-21596793 None:intergenic 30.0%
ATATCTTCTTCCTTTCTGTA+GGG - chr7.3:21598813-21598832 MS.gene41839:intron 30.0%
ATCTTAAGCGACGTAATTAA+AGG + chr7.3:21597654-21597673 None:intergenic 30.0%
ATGTTCAACGACTTAAAGTT+AGG + chr7.3:21597404-21597423 None:intergenic 30.0%
ATTTACAGTCTCAACATCAA+TGG - chr7.3:21597685-21597704 MS.gene41839:intron 30.0%
CAAACTAAGTCCAATACTAA+TGG - chr7.3:21596207-21596226 MS.gene41839:intron 30.0%
CTAACACTGCAAATTAAGAA+AGG + chr7.3:21598273-21598292 None:intergenic 30.0%
CTATGATGTAATAACAACCT+AGG + chr7.3:21598674-21598693 None:intergenic 30.0%
GAAAAACATTGGTACCTTAT+AGG - chr7.3:21596853-21596872 MS.gene41839:intron 30.0%
GAGTATATCTTCAAAGATCA+TGG - chr7.3:21596323-21596342 MS.gene41839:CDS 30.0%
GCAAAAGAATATGGAATGAT+GGG - chr7.3:21596301-21596320 MS.gene41839:intron 30.0%
GGTAACAATACACAAGTAAT+AGG + chr7.3:21596889-21596908 None:intergenic 30.0%
TAACATGAAACCTGAAGAAA+GGG + chr7.3:21596773-21596792 None:intergenic 30.0%
TAATCAGCTACAAAACTGAT+TGG - chr7.3:21598889-21598908 MS.gene41839:intron 30.0%
TATATCTTCTTCCTTTCTGT+AGG - chr7.3:21598812-21598831 MS.gene41839:intron 30.0%
TATGCAAAAGGATTACCATA+TGG + chr7.3:21597514-21597533 None:intergenic 30.0%
TATTAATAAGTGGTCTAAGG+TGG - chr7.3:21599263-21599282 MS.gene41839:CDS 30.0%
TCACTTAGAGTTCAATGATT+TGG + chr7.3:21595906-21595925 None:intergenic 30.0%
TCCTTACATCATTCACAATT+GGG - chr7.3:21598355-21598374 MS.gene41839:intron 30.0%
TCGTATTAATAAGTGGTCTA+AGG - chr7.3:21599260-21599279 MS.gene41839:CDS 30.0%
TCTCTTTCACATTATTCTAG+TGG - chr7.3:21594797-21594816 MS.gene41839:intron 30.0%
TGCAAAAGAATATGGAATGA+TGG - chr7.3:21596300-21596319 MS.gene41839:intron 30.0%
TGCAAGGAAGATTATATGTA+GGG + chr7.3:21595601-21595620 None:intergenic 30.0%
TGGCCTAGGATAATTAAAAT+TGG + chr7.3:21596403-21596422 None:intergenic 30.0%
TTAAGGACTACTCATAAAGT+TGG - chr7.3:21598137-21598156 MS.gene41839:intron 30.0%
TTGCAAGGAAGATTATATGT+AGG + chr7.3:21595602-21595621 None:intergenic 30.0%
! ACCAATATTTGGAATCCATA+AGG + chr7.3:21596656-21596675 None:intergenic 30.0%
! AGTGGATCTAAAATAAAAGG+GGG - chr7.3:21594852-21594871 MS.gene41839:intron 30.0%
! ATTGAAGTACCAACATAGTT+TGG + chr7.3:21595242-21595261 None:intergenic 30.0%
! CAATCATTTGTTGGTCATAT+TGG - chr7.3:21594677-21594696 MS.gene41839:intron 30.0%
! CATTAGTATTGGACTTAGTT+TGG + chr7.3:21596209-21596228 None:intergenic 30.0%
! CTAGGTTGTTATTACATCAT+AGG - chr7.3:21598672-21598691 MS.gene41839:intron 30.0%
! TCGGTCTAAAAAGTTTTACA+CGG - chr7.3:21599059-21599078 MS.gene41839:intron 30.0%
! TGCATCTTAGCATATAGTTT+TGG - chr7.3:21595006-21595025 MS.gene41839:intron 30.0%
! TTTCTTCAGGTTTCATGTTA+TGG - chr7.3:21596773-21596792 MS.gene41839:intron 30.0%
!! AGATTCACACATTTTAAGAG+TGG - chr7.3:21595537-21595556 MS.gene41839:intron 30.0%
!! ATATGGATTGGTATGTTGTT+TGG - chr7.3:21598837-21598856 MS.gene41839:intron 30.0%
!! ATTTAATTTTCATGCACGGT+CGG - chr7.3:21599040-21599059 MS.gene41839:intron 30.0%
!! CATTAACATTTTGGAAATGC+AGG - chr7.3:21598603-21598622 MS.gene41839:intron 30.0%
!! TCTATCTCTGCTTTTGAATT+TGG + chr7.3:21595359-21595378 None:intergenic 30.0%
!! TTAGAGTTCAATGATTTGGT+TGG + chr7.3:21595902-21595921 None:intergenic 30.0%
!! TTTCAATAAGTTTGGCCTTA+TGG - chr7.3:21596638-21596657 MS.gene41839:intron 30.0%
!!! AATATTTTGATGTTAGGGCA+CGG + chr7.3:21597842-21597861 None:intergenic 30.0%
!!! ACGGTATTGATTCTTTTAAC+AGG - chr7.3:21597450-21597469 MS.gene41839:CDS 30.0%
!!! GCAGGAATATTTTGATGTTA+GGG + chr7.3:21597847-21597866 None:intergenic 30.0%
!!! GTCATTGTTTTTGGAACAAA+CGG - chr7.3:21597933-21597952 MS.gene41839:intron 30.0%
!!! TGCAGGAATATTTTGATGTT+AGG + chr7.3:21597848-21597867 None:intergenic 30.0%
AAAATCAAGCTTGGGATTGT+TGG - chr7.3:21596607-21596626 MS.gene41839:intron 35.0%
AAGAATTCAGATTCTGTCGA+AGG + chr7.3:21595944-21595963 None:intergenic 35.0%
AATCCATATACCCTACAGAA+AGG + chr7.3:21598826-21598845 None:intergenic 35.0%
ACATCATAACAACTATGCAC+TGG + chr7.3:21597097-21597116 None:intergenic 35.0%
ACATCATAGGTATTCCTGTT+GGG - chr7.3:21598685-21598704 MS.gene41839:intron 35.0%
ACCCAATTGTGAATGATGTA+AGG + chr7.3:21598359-21598378 None:intergenic 35.0%
AGTTTACCATTTGCAAGTCA+AGG - chr7.3:21598722-21598741 MS.gene41839:intron 35.0%
ATACAACCAAAAACATAGGG+TGG + chr7.3:21597574-21597593 None:intergenic 35.0%
ATAGTTTGGATGTTATGCAG+TGG + chr7.3:21595228-21595247 None:intergenic 35.0%
ATGCAACTGTTTCATGATCA+GGG + chr7.3:21599290-21599309 None:intergenic 35.0%
ATTATGTTATGTTACGGACG+TGG - chr7.3:21596919-21596938 MS.gene41839:intron 35.0%
ATTGTAGCATATGTGAACCT+AGG - chr7.3:21598654-21598673 MS.gene41839:intron 35.0%
CAACTCAATTGTTAGTTGCA+AGG + chr7.3:21595617-21595636 None:intergenic 35.0%
CTCGGAATCGTATTAATAAG+TGG - chr7.3:21599253-21599272 MS.gene41839:CDS 35.0%
CTGTTCATGTATTACTCTCT+TGG - chr7.3:21596572-21596591 MS.gene41839:intron 35.0%
GAAAATCTTGTGAATATGGC+TGG + chr7.3:21594632-21594651 None:intergenic 35.0%
GATGATATCACTTGGTTTCA+TGG - chr7.3:21597717-21597736 MS.gene41839:intron 35.0%
GCATAACATCCAAACTATGT+TGG - chr7.3:21595230-21595249 MS.gene41839:intron 35.0%
GCCTTATGGATTCCAAATAT+TGG - chr7.3:21596652-21596671 MS.gene41839:intron 35.0%
GTAATTCTTAAACGGACAAG+AGG + chr7.3:21596978-21596997 None:intergenic 35.0%
GTCCTTACATCATTCACAAT+TGG - chr7.3:21598354-21598373 MS.gene41839:intron 35.0%
GTTCTTGTTAGATTCGTCAA+TGG - chr7.3:21594737-21594756 MS.gene41839:intron 35.0%
TACATCATAGGTATTCCTGT+TGG - chr7.3:21598684-21598703 MS.gene41839:intron 35.0%
TAGGACTTAAGAGACCTATA+AGG + chr7.3:21596870-21596889 None:intergenic 35.0%
TCATCTAGCAACTTCTTCTT+TGG + chr7.3:21594539-21594558 None:intergenic 35.0%
TCGACAGAATCTGAATTCTT+CGG - chr7.3:21595944-21595963 MS.gene41839:intron 35.0%
TGGAATTGACCAATAACCAA+TGG + chr7.3:21596455-21596474 None:intergenic 35.0%
TGGGAAATGATGATATCACT+TGG - chr7.3:21597709-21597728 MS.gene41839:intron 35.0%
TTGTGACTGAAGGAATGTTT+GGG + chr7.3:21596509-21596528 None:intergenic 35.0%
TTTCTGTAGGGTATATGGAT+TGG - chr7.3:21598825-21598844 MS.gene41839:intron 35.0%
TTTGTGACTGAAGGAATGTT+TGG + chr7.3:21596510-21596529 None:intergenic 35.0%
! AAACAAAAAAGCATAGGGCA+TGG - chr7.3:21595332-21595351 MS.gene41839:CDS 35.0%
! AGAATTTAGGGTTCAAACTC+AGG - chr7.3:21595568-21595587 MS.gene41839:intron 35.0%
! AGACTTGTTCTCACTAAACA+GGG + chr7.3:21595510-21595529 None:intergenic 35.0%
! GATTCTTTTAACAGGCAACA+TGG - chr7.3:21597458-21597477 MS.gene41839:CDS 35.0%
! TAGACTTGTTCTCACTAAAC+AGG + chr7.3:21595511-21595530 None:intergenic 35.0%
!! CTTAATTTGCAGTGTTAGAG+TGG - chr7.3:21598275-21598294 MS.gene41839:intron 35.0%
AACGGACAAGAGGTAAACAT+AGG + chr7.3:21596968-21596987 None:intergenic 40.0%
ACACTATGTGGACAAGCATA+CGG - chr7.3:21596277-21596296 MS.gene41839:intron 40.0%
ACAGTCTCAACATCAATGGA+TGG - chr7.3:21597689-21597708 MS.gene41839:intron 40.0%
ATGTGCAGGTAACTATTGCT+CGG - chr7.3:21599235-21599254 MS.gene41839:CDS 40.0%
ATTCCTGTTGGGATTGTTCT+TGG - chr7.3:21598696-21598715 MS.gene41839:intron 40.0%
CAAAACTGATTGGGACAAAC+AGG - chr7.3:21598899-21598918 MS.gene41839:intron 40.0%
CACTGCAAACTTTGCATCTT+TGG + chr7.3:21598325-21598344 None:intergenic 40.0%
CAGTCTCAACATCAATGGAT+GGG - chr7.3:21597690-21597709 MS.gene41839:intron 40.0%
CTCAGATGATAAAAGGTTGC+AGG + chr7.3:21597865-21597884 None:intergenic 40.0%
CTTCCTTTCTGTAGGGTATA+TGG - chr7.3:21598820-21598839 MS.gene41839:intron 40.0%
CTTGTGCTATGGTTTCATCT+TGG + chr7.3:21596423-21596442 None:intergenic 40.0%
GAAAGAGAGCAAGCTAATGT+GGG - chr7.3:21594595-21594614 MS.gene41839:intron 40.0%
GAATGTTTGGGTAGTGAATG+AGG + chr7.3:21596497-21596516 None:intergenic 40.0%
GATGCAACTGTTTCATGATC+AGG + chr7.3:21599291-21599310 None:intergenic 40.0%
GCATACGGTGCAAAAGAATA+TGG - chr7.3:21596292-21596311 MS.gene41839:intron 40.0%
GGAGTTGTGAAGATGAATAG+TGG + chr7.3:21596382-21596401 None:intergenic 40.0%
TAATTACTTGCGCACCATAG+AGG - chr7.3:21597053-21597072 MS.gene41839:CDS 40.0%
TAGATTCGTCAATGGCATTC+TGG - chr7.3:21594745-21594764 MS.gene41839:intron 40.0%
TGGTGTTCTGATACTTGGAA+AGG - chr7.3:21596700-21596719 MS.gene41839:intron 40.0%
TGTCATTGGTGAAGAAGATG+TGG - chr7.3:21594573-21594592 MS.gene41839:CDS 40.0%
TTACCAAGAACAATCCCAAC+AGG + chr7.3:21598702-21598721 None:intergenic 40.0%
! ACTCTTAGTGTTGAGAAGTG+GGG - chr7.3:21597802-21597821 MS.gene41839:intron 40.0%
! CACTCTTAGTGTTGAGAAGT+GGG - chr7.3:21597801-21597820 MS.gene41839:intron 40.0%
! CATTTTGCAGTCTTGAGCTT+TGG - chr7.3:21597421-21597440 MS.gene41839:CDS 40.0%
! GTTTGTCCACCCTATGTTTT+TGG - chr7.3:21597565-21597584 MS.gene41839:CDS 40.0%
! TAGCAGGAACCATTGGTTAT+TGG - chr7.3:21596443-21596462 MS.gene41839:intron 40.0%
! TCTTGAGCTTTGGTACAACA+CGG - chr7.3:21597431-21597450 MS.gene41839:CDS 40.0%
! TTTTACCACAAACAAGGACG+TGG - chr7.3:21598428-21598447 MS.gene41839:intron 40.0%
!! TACTCACCTTGACTTGCAAA+TGG + chr7.3:21598731-21598750 None:intergenic 40.0%
CATTCCTTCAGTCACAAAGC+AGG - chr7.3:21596512-21596531 MS.gene41839:intron 45.0%
CTATGGTTTCATCTTGGCCT+AGG + chr7.3:21596417-21596436 None:intergenic 45.0%
GAAACCATAGCACAAGTAGC+AGG - chr7.3:21596427-21596446 MS.gene41839:intron 45.0%
GAAAGGGAAAGCTTGACAAC+AGG + chr7.3:21596757-21596776 None:intergenic 45.0%
GGAAAGAGAGCAAGCTAATG+TGG - chr7.3:21594594-21594613 MS.gene41839:intron 45.0%
GGAAATGCAGGAGTTGCTAT+TGG - chr7.3:21598615-21598634 MS.gene41839:intron 45.0%
GTCAAGCTTTCCCTTTCTTC+AGG - chr7.3:21596760-21596779 MS.gene41839:intron 45.0%
GTGAACCAACACATCCTCTA+TGG + chr7.3:21597070-21597089 None:intergenic 45.0%
GTGGCAAATGAGCTTGGAAA+AGG - chr7.3:21598294-21598313 MS.gene41839:intron 45.0%
GTTAGAGTGGCAAATGAGCT+TGG - chr7.3:21598288-21598307 MS.gene41839:intron 45.0%
GTTAGGAATGGCTAGTGCAT+TGG - chr7.3:21596252-21596271 MS.gene41839:intron 45.0%
TGACAAATCACCAACAGCTG+AGG + chr7.3:21598454-21598473 None:intergenic 45.0%
TGTTCCTGCTTTGTGACTGA+AGG + chr7.3:21596519-21596538 None:intergenic 45.0%
TGTTGAGAAGTGGGGAATTG+TGG - chr7.3:21597810-21597829 MS.gene41839:intron 45.0%
! AGTGCATTGGCAACACTATG+TGG - chr7.3:21596265-21596284 MS.gene41839:intron 45.0%
! GCACTCTTAGTGTTGAGAAG+TGG - chr7.3:21597800-21597819 MS.gene41839:intron 45.0%
! GTGGTTGGTGTTCTGATACT+TGG - chr7.3:21596695-21596714 MS.gene41839:intron 45.0%
!! TAGAGGATGTGTTGGTTCAC+TGG - chr7.3:21597070-21597089 MS.gene41839:CDS 45.0%
!! AATTTAAATTATTTCAAATT+AGG - chr7.3:21595842-21595861 MS.gene41839:intron 5.0%
AAGCTAATGTGGGTGGTTGC+AGG - chr7.3:21594605-21594624 MS.gene41839:intron 50.0%
AGAGAGCAAGCTAATGTGGG+TGG - chr7.3:21594598-21594617 MS.gene41839:intron 50.0%
GCACAAGTAGCAGGAACCAT+TGG - chr7.3:21596436-21596455 MS.gene41839:intron 50.0%
TGTTATGTTACGGACGTGGC+AGG - chr7.3:21596923-21596942 MS.gene41839:intron 50.0%
TTGGTTTCATGGCTGCAGCA+AGG - chr7.3:21597728-21597747 MS.gene41839:intron 50.0%
! CAGGAGTTGCTATTGGAGCA+GGG - chr7.3:21598622-21598641 MS.gene41839:intron 50.0%
! GGTTCCTGCTACTTGTGCTA+TGG + chr7.3:21596434-21596453 None:intergenic 50.0%
GCGCACCATAGAGGATGTGT+TGG - chr7.3:21597062-21597081 MS.gene41839:CDS 55.0%
! GAGTTGCTATTGGAGCAGGG+TGG - chr7.3:21598625-21598644 MS.gene41839:intron 55.0%
! GCAGGAGTTGCTATTGGAGC+AGG - chr7.3:21598621-21598640 MS.gene41839:intron 55.0%
! TGAGGCCACGTCCTTGTTTG+TGG + chr7.3:21598436-21598455 None:intergenic 55.0%
AAGGACGTGGCCTCAGCTGT+TGG - chr7.3:21598441-21598460 MS.gene41839:intron 60.0%
TTACGGACGTGGCAGGAACG+AGG - chr7.3:21596930-21596949 MS.gene41839:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 21594518 21599320 21594518 ID=MS.gene41839
chr7.3 mRNA 21594518 21599320 21594518 ID=MS.gene41839.t1;Parent=MS.gene41839
chr7.3 exon 21599072 21599320 21599072 ID=MS.gene41839.t1.exon1;Parent=MS.gene41839.t1
chr7.3 CDS 21599072 21599320 21599072 ID=cds.MS.gene41839.t1;Parent=MS.gene41839.t1
chr7.3 exon 21597044 21597585 21597044 ID=MS.gene41839.t1.exon2;Parent=MS.gene41839.t1
chr7.3 CDS 21597044 21597585 21597044 ID=cds.MS.gene41839.t1;Parent=MS.gene41839.t1
chr7.3 exon 21596321 21596407 21596321 ID=MS.gene41839.t1.exon3;Parent=MS.gene41839.t1
chr7.3 CDS 21596321 21596407 21596321 ID=cds.MS.gene41839.t1;Parent=MS.gene41839.t1
chr7.3 exon 21596089 21596145 21596089 ID=MS.gene41839.t1.exon4;Parent=MS.gene41839.t1
chr7.3 CDS 21596089 21596145 21596089 ID=cds.MS.gene41839.t1;Parent=MS.gene41839.t1
chr7.3 exon 21595313 21595551 21595313 ID=MS.gene41839.t1.exon5;Parent=MS.gene41839.t1
chr7.3 CDS 21595313 21595551 21595313 ID=cds.MS.gene41839.t1;Parent=MS.gene41839.t1
chr7.3 exon 21595095 21595213 21595095 ID=MS.gene41839.t1.exon6;Parent=MS.gene41839.t1
chr7.3 CDS 21595095 21595213 21595095 ID=cds.MS.gene41839.t1;Parent=MS.gene41839.t1
chr7.3 exon 21594918 21595004 21594918 ID=MS.gene41839.t1.exon7;Parent=MS.gene41839.t1
chr7.3 CDS 21594918 21595004 21594918 ID=cds.MS.gene41839.t1;Parent=MS.gene41839.t1
chr7.3 exon 21594518 21594595 21594518 ID=MS.gene41839.t1.exon8;Parent=MS.gene41839.t1
chr7.3 CDS 21594518 21594595 21594518 ID=cds.MS.gene41839.t1;Parent=MS.gene41839.t1
Gene Sequence

>MS.gene41839

ATGGAGGGAGATCATGATCCAAAGAAGAAGTTGCTAGATGAAGAAGAAGAAGAATTGTCATTGGTGAAGAAGATGTGGAAAGAGAGCAAGCTAATGTGGGTGGTTGCAGGTCCAGCCATATTCACAAGATTTTCATCTTTTGGTGTCCAAATTATCACTCAATCATTTGTTGGTCATATTGGTTCTACTGAACTTGCTGCATATTCTCTAGTATTCACTGTTCTTGTTAGATTCGTCAATGGCATTCTGGTATGTTTATCTTTATCAACTACTACTTTTTCTCTTTCACATTATTCTAGTGGATCTTTTTTTTATATATTTTTGTGATGATTCTAGTGGATCTAAAATAAAAGGGGGAAAAAAAAAACATGTTTCTTTTTGAGGGAATTTTTTTTGGAAAAAAGTTGAAGATTCGGATCTATGCATCTTAATTCTTAATAGAAAAGAAATAGTACCAATAATAATAAAAAAAAAATAGAGAATATACTTGCATCTTAGCATATAGTTTTGGTTTGAGTTTTGAATTTGTGCTATTAATAATATTAACTGTGAAATGAATAAGAAAATTGGGCAAAGTTTCAAAAATAATCATATGGGTATTTAAATTTCCTTTCTATCTTCCCAAATATTTATATTGATGATAAAGTTTTTGAAATTATTCACTAGTATAGTGTTTTAGACAATAAATAAATAGGTATGCAAAAGCACCACTGCATAACATCCAAACTATGTTGGTACTTCAATTTCAAACATCACCAATAATGTGACATAAGTTTATTTCTTTTGAAGGAATGTGACATAAGTTTATTAATAAAAACAAAAAAGCATAGGGCATGGACCAAATTCAAAAGCAGAGATAGAAAAATATATAAATAGGAAGACTTATCTTATTACCAAAAAACATTTGTTAATTAAATCGCACTAAATTAGACCATGAATATTAGGGTTAAAATTTGCTAATTTGTCTACTCAAGAGTTGACTTTTGCTTCCCTGTTTAGTGAGAACAAGTCTAGTGACTAGATTCACACATTTTAAGAGTGGAAAAATAGAGAATTTAGGGTTCAAACTCAGGAGTCACGCCCTACATATAATCTTCCTTGCAACTAACAATTGAGTTGTACTTACGTAACCATTTAAAGTAATTTATCATAATTTAATATATTTGTTTATGTTAGAAAAAAATTAGAGTGTTGTACCAAAAAAAAAAAATTAGTGTGTGGTATGTGTTTATTTTTAGTATAAGTATTTATATCTCTAAAAACAACCGAAAACATAAAATAAGAGAATAATATAGTTCAAGCTTCTCTAAGAGTAAGAAAATGTAATTTAAATTATTTCAAATTAGGTCTTAATTTTGCCTCAAAGAAACTAAGAATACAACCAACCAAATCATTGAACTCTAAGTGATTAACTAAGAGGAATCCTTCGACAGAATCTGAATTCTTCGGTTAGACTTTACTTACCTTTCGACTAAACTCTATTGTTTTGCCAACAAATTAACTGAGTTTTATTGACTATACTCGAAATATGGTATTAGTTTTACTAGAATAATTTTAATGATATCTTAAACATGTTGTAAGAAAAACATCAGCAGCAAATATTGTAATGAGTTAAAGTAGATTTAAAAGGTAAAAGGATGTGAAACCTATACTATCACAATATTCAAAAAATATATGTGCATCTATCTCCAAACTAAGTCCAATACTAATGGCTTTTATAAATTGATATTTGTAGTTAGGAATGGCTAGTGCATTGGCAACACTATGTGGACAAGCATACGGTGCAAAAGAATATGGAATGATGGGAGTATATCTTCAAAGATCATGGATAGTTTTATCTTTAACTGCACTCATTCTTCTTCCACTATTCATCTTCACAACTCCAATTTTAATTATCCTAGGCCAAGATGAAACCATAGCACAAGTAGCAGGAACCATTGGTTATTGGTCAATTCCAATTTTGTTTGCTTTTATTGCCTCATTCACTACCCAAACATTCCTTCAGTCACAAAGCAGGAACATTATTATTGCATACTTGGCAGCTTTCTCAATTTCTGTTCATGTATTACTCTCTTGGCTTTTAACAATGAAAATCAAGCTTGGGATTGTTGGTGCAATGATTTCAATAAGTTTGGCCTTATGGATTCCAAATATTGGTCAACTTATATTTATTACATGTGGTTGGTGTTCTGATACTTGGAAAGGTTTCTCATTTTTAGCTTTACAAGATCTTTGGCCTGTTGTCAAGCTTTCCCTTTCTTCAGGTTTCATGTTATGGTGAGCTTTTCTTCTCTAAGATATTTCTTTTTGGCAAAATACATGATTAGTTTTAAAAGAAAAACATTGGTACCTTATAGGTCTCTTAAGTCCTATTACTTGTGTATTGTTACCCTTTTCATACATTATGTTATGTTACGGACGTGGCAGGAACGAGGTTGACCATTTATCCTATGTTTACCTCTTGTCCGTTTAAGAATTACGTTAAATGATTTGAAGCAAATACTATTGGTTGTATAATTTCAAACTATAGGTTGTTAATTACTTGCGCACCATAGAGGATGTGTTGGTTCACTGGTCCAGTGCATAGTTGTTATGATGTATATACCATAGATTAGCACAAGTTTGTTAGAGATTAGTTACTTGAACTAGAAGTTAGTTGAATAAGATTGAGTTAGTTAGTTAGTTAGAGATTAACTTAATCATAGAATTTACTTGTCAGTCAAGTAACCATAGTTAGTTATCATAACTACAAAGGGTTAATGCATTGTGTATTCTAACAACTTCTCTATTCAATACAATTTACATAGTAATTCATTCATACTCTTAAACACAAATGTTCACTAACATAGATATGCTGACCAAAAAAAAAATGTTAAATGTTTTCCTAACTTTAAGTCGTTGAACATTTTGCAGTCTTGAGCTTTGGTACAACACGGTATTGATTCTTTTAACAGGCAACATGGAAAATGCAGAGATTCAAATTGATGCTCTATCCATATGGTAATCCTTTTGCATATTCACATTTCATTTTTTTCAATATAAGTATTGTTTGTCCACCCTATGTTTTTGGTTGTATTAATTAGCTTGATTATTATGTACCAATAAACAAAATAGCTTGATTAACTGCATATATCCTTTAATTACGTCGCTTAAGATAAAGTTGAATTATTTACAGTCTCAACATCAATGGATGGGAAATGATGATATCACTTGGTTTCATGGCTGCAGCAAGGTATTGACATCTTACTCTTTTTTACTCTAAAGAGCATAACAGTGAAACTTGCACTCTTAGTGTTGAGAAGTGGGGAATTGTGGTTAGAACCGTGCCCTAACATCAAAATATTCCTGCAACCTTTTATCATCTGAGTTGTACTTATGAGATTGTCATTCTCACTCTTTAATATCTAATGTTGTAGTCATTGTTTTTGGAACAAACGGTTAATTTAGTTCTTAAAGTATCACTTTCTCTAATTTAGTTCCTACTCGCTAAAGTATATAAAAAATGATTAGTCTCATATGTATGTGAAATCCATCAATTTAGTCCATAAATTATACGAAGATATTTCATGTTACTCCTGTATCTTAATAGTTGAGACTAAATTGGTGGATTTTATATATTTTAAGGACTACTCATAAAGTTGGCATCATAAAAAGTTCGATCAAATTGGTGGTTTATTCTTGTTTTCATCATCATTTGAGTTATGAATTCCACACAATTATGTTGTTTTTTACTATGGAGAACCAACTTTTTGCCTTTCTTAATTTGCAGTGTTAGAGTGGCAAATGAGCTTGGAAAAGGAAGTGCCAAAGATGCAAAGTTTGCAGTGAACATGATAGTCCTTACATCATTCACAATTGGGTTCCTTCTGTTTTTATTTTTCTTATTTTTTAGAGAAAGACTTGCTCATATTTTTACCACAAACAAGGACGTGGCCTCAGCTGTTGGTGATTTGTCACCTCTATTAGCAGTTTCTATACTACTAAACAGTGTTCAACCTGTACTCTCAGGTACTAATTCTTCACAACATTTCATCTCTTTGAATTTGTCTAGCAAAATGTATGAAACTACAAGACCATGAAATTAACATTAACATTTTGGAAATGCAGGAGTTGCTATTGGAGCAGGGTGGCAAAGTATTGTAGCATATGTGAACCTAGGTTGTTATTACATCATAGGTATTCCTGTTGGGATTGTTCTTGGTAAAGTTTACCATTTGCAAGTCAAGGTGAGTACTATTTTCTCATTTCAAATTGTAGTTATATGTTTGCTTCTTTCTTCCATTAGACACTACTATATATCTTCTTCCTTTCTGTAGGGTATATGGATTGGTATGTTGTTTGGAACACTAATGCAAACTATTATACTACTCATAATCAGCTACAAAACTGATTGGGACAAACAGGTATTTAATCAAATATTGCCATTTTTTTTTTTTTTGCTTTATTGGTGTATTACATTGCTTCTTTATTAGTGGATTCCATTCCATCTTAAGCATATTATAGTTATTATAATAAAATAAGAATTTAATTTTCATGCACGGTCGGTCTAAAAAGTTTTACACGGATCTCACATCACAATCAATTATGTATGTGATTTTATAAGTGGTTATAATAAAAGTCAAACATTTTTTTATGATTCAGTGGTTATGATTGATTGACTACATAAAAACACTGAATTATATATGAATTACATTCATAAAATAATAATTATGTTTTCATGTGCAGGTAACTATTGCTCGGAATCGTATTAATAAGTGGTCTAAGGTGGACCCTGATCATGAAACAGTTGCATCAGATAATTAG
Protein sequence

>MS.gene41839.t1

MEGDHDPKKKLLDEEEEELSLVKKMWKESKLMWVVAGPAIFTRFSSFGVQIITQSFVGHIGSTELAAYSLVFTVLVRFVNGILLGMASALATLCGQAYGAKEYGMMGVYLQRSWIVLSLTALILLPLFIFTTPILIILGQDETIAQVAGTIGYWSIPILFAFIASFTTQTFLQSQSRNIIIAYLAAFSISVHVLLSWLLTMKIKLGIVGAMISISLALWIPNIGQLIFITCGWCSDTWKGFSFLALQDLWPVVKLSLSSGFMLCLELWYNTVLILLTGNMENAEIQIDALSICLNINGWEMMISLGFMAAASVRVANELGKGSAKDAKFAVNMIVLTSFTIGFLLFLFFLFFRERLAHIFTTNKDVASAVGDLSPLLAVSILLNSVQPVLSGVAIGAGWQSIVAYVNLGCYYIIGIPVGIVLGKVYHLQVKGIWIGMLFGTLMQTIILLIISYKTDWDKQVTIARNRINKWSKVDPDHETVASDN