Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049584.t1 | RHN67914.1 | 63.1 | 578 | 145 | 9 | 1 | 526 | 1326 | 1887 | 3.00E-169 | 605.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049584.t1 | A0A396IU65 | 63.1 | 578 | 145 | 9 | 1 | 526 | 1326 | 1887 | 2.2e-169 | 605.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049584 | MS.gene07876 | 0.812906 | 3.35E-51 | -1.69E-46 |
| MS.gene049584 | MS.gene35822 | 0.803864 | 2.84E-49 | -1.69E-46 |
| MS.gene049584 | MS.gene53321 | 0.808363 | 3.21E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049584.t1 | MTR_3g466750 | 61.235 | 583 | 157 | 10 | 1 | 526 | 1298 | 1868 | 0.0 | 633 |
| MS.gene049584.t1 | MTR_3g435040 | 56.349 | 630 | 144 | 9 | 1 | 517 | 1003 | 1614 | 0.0 | 608 |
| MS.gene049584.t1 | MTR_3g435040 | 56.349 | 630 | 144 | 9 | 1 | 517 | 1005 | 1616 | 0.0 | 608 |
| MS.gene049584.t1 | MTR_3g435040 | 56.349 | 630 | 144 | 9 | 1 | 517 | 1220 | 1831 | 0.0 | 607 |
| MS.gene049584.t1 | MTR_3g435040 | 56.082 | 633 | 144 | 9 | 1 | 517 | 1220 | 1834 | 0.0 | 607 |
| MS.gene049584.t1 | MTR_3g435040 | 58.031 | 579 | 153 | 7 | 1 | 517 | 1005 | 1555 | 0.0 | 593 |
| MS.gene049584.t1 | MTR_3g451150 | 53.344 | 628 | 167 | 16 | 1 | 526 | 1276 | 1879 | 2.36e-173 | 535 |
| MS.gene049584.t1 | MTR_3g452250 | 53.344 | 628 | 167 | 16 | 1 | 526 | 1276 | 1879 | 2.36e-173 | 535 |
| MS.gene049584.t1 | MTR_3g062980 | 54.827 | 549 | 171 | 14 | 1 | 526 | 204 | 698 | 7.14e-170 | 497 |
| MS.gene049584.t1 | MTR_3g062980 | 48.246 | 114 | 41 | 3 | 1 | 98 | 92 | 203 | 3.65e-22 | 100 |
| MS.gene049584.t1 | MTR_3g063010 | 55.335 | 553 | 173 | 16 | 1 | 526 | 1297 | 1802 | 1.67e-165 | 513 |
| MS.gene049584.t1 | MTR_3g062320 | 56.272 | 558 | 155 | 15 | 1 | 526 | 1106 | 1606 | 9.63e-165 | 508 |
| MS.gene049584.t1 | MTR_3g062340 | 73.961 | 361 | 65 | 3 | 192 | 526 | 1592 | 1949 | 1.08e-157 | 494 |
| MS.gene049584.t1 | MTR_3g062340 | 53.461 | 419 | 130 | 10 | 1 | 370 | 1206 | 1608 | 5.21e-110 | 360 |
| MS.gene049584.t1 | MTR_3g062130 | 53.801 | 513 | 103 | 10 | 60 | 526 | 1 | 425 | 7.55e-155 | 449 |
| MS.gene049584.t1 | MTR_2g023000 | 52.199 | 523 | 90 | 12 | 1 | 476 | 1 | 410 | 9.48e-141 | 412 |
| MS.gene049584.t1 | MTR_3g062420 | 44.760 | 668 | 193 | 16 | 1 | 524 | 1304 | 1939 | 5.46e-133 | 426 |
| MS.gene049584.t1 | MTR_3g464870 | 42.090 | 689 | 213 | 20 | 1 | 526 | 1212 | 1877 | 2.96e-123 | 397 |
| MS.gene049584.t1 | MTR_3g464840 | 46.774 | 558 | 204 | 16 | 1 | 513 | 1206 | 1715 | 9.64e-123 | 396 |
| MS.gene049584.t1 | MTR_3g435040 | 57.520 | 379 | 101 | 5 | 1 | 323 | 1003 | 1377 | 2.01e-120 | 385 |
| MS.gene049584.t1 | MTR_3g062090 | 66.774 | 310 | 63 | 5 | 1 | 274 | 1285 | 1590 | 1.64e-116 | 379 |
| MS.gene049584.t1 | MTR_3g062090 | 66.774 | 310 | 63 | 5 | 1 | 274 | 1285 | 1590 | 2.39e-116 | 377 |
| MS.gene049584.t1 | MTR_3g027360 | 73.246 | 228 | 50 | 1 | 253 | 469 | 51 | 278 | 1.98e-110 | 330 |
| MS.gene049584.t1 | MTR_3g435040 | 66.023 | 259 | 79 | 2 | 1 | 254 | 1005 | 1259 | 5.18e-100 | 328 |
| MS.gene049584.t1 | MTR_3g062230 | 55.183 | 328 | 108 | 8 | 1 | 302 | 249 | 563 | 3.65e-94 | 301 |
| MS.gene049584.t1 | MTR_3g435040 | 50.132 | 379 | 87 | 6 | 1 | 323 | 1003 | 1335 | 2.44e-93 | 310 |
| MS.gene049584.t1 | MTR_3g062010 | 39.888 | 534 | 224 | 14 | 1 | 526 | 800 | 1244 | 1.87e-88 | 296 |
| MS.gene049584.t1 | MTR_2g049960 | 59.919 | 247 | 76 | 3 | 303 | 526 | 77 | 323 | 3.31e-87 | 272 |
| MS.gene049584.t1 | MTR_3g062400 | 51.961 | 306 | 85 | 4 | 269 | 526 | 1 | 292 | 1.61e-85 | 266 |
| MS.gene049584.t1 | MTR_0922s0020 | 63.877 | 227 | 56 | 3 | 311 | 526 | 1 | 212 | 3.12e-85 | 263 |
| MS.gene049584.t1 | MTR_3g464950 | 42.478 | 452 | 160 | 12 | 144 | 526 | 1368 | 1788 | 1.83e-78 | 269 |
| MS.gene049584.t1 | MTR_3g464950 | 40.143 | 279 | 106 | 9 | 4 | 273 | 1105 | 1331 | 1.74e-41 | 160 |
| MS.gene049584.t1 | MTR_3g464920 | 41.892 | 444 | 154 | 14 | 144 | 526 | 1341 | 1741 | 2.94e-76 | 262 |
| MS.gene049584.t1 | MTR_3g464920 | 64.407 | 118 | 33 | 2 | 4 | 112 | 1118 | 1235 | 7.20e-38 | 149 |
| MS.gene049584.t1 | MTR_3g464810 | 45.293 | 393 | 116 | 9 | 163 | 487 | 1496 | 1857 | 2.84e-75 | 259 |
| MS.gene049584.t1 | MTR_3g464810 | 38.202 | 356 | 133 | 12 | 1 | 324 | 1172 | 1472 | 1.67e-51 | 190 |
| MS.gene049584.t1 | MTR_3g062180 | 47.143 | 350 | 105 | 9 | 1 | 337 | 115 | 397 | 2.28e-74 | 248 |
| MS.gene049584.t1 | MTR_3g062140 | 47.143 | 350 | 105 | 9 | 1 | 337 | 1233 | 1515 | 1.05e-70 | 246 |
| MS.gene049584.t1 | MTR_2g451270 | 52.632 | 247 | 66 | 4 | 303 | 526 | 33 | 251 | 2.08e-68 | 221 |
| MS.gene049584.t1 | MTR_0257s0040 | 75.556 | 135 | 31 | 1 | 1 | 135 | 46 | 178 | 2.73e-62 | 202 |
| MS.gene049584.t1 | MTR_3g467660 | 70.588 | 153 | 39 | 2 | 1 | 148 | 164 | 315 | 3.54e-62 | 206 |
| MS.gene049584.t1 | MTR_0043s0080 | 37.859 | 383 | 152 | 12 | 1 | 343 | 11 | 347 | 2.13e-55 | 194 |
| MS.gene049584.t1 | MTR_0043s0080 | 37.143 | 385 | 142 | 9 | 1 | 343 | 11 | 337 | 2.50e-55 | 194 |
| MS.gene049584.t1 | MTR_3g062050 | 70.714 | 140 | 35 | 1 | 1 | 134 | 230 | 369 | 1.58e-53 | 186 |
| MS.gene049584.t1 | MTR_3g062060 | 69.531 | 128 | 38 | 1 | 149 | 275 | 1 | 128 | 9.37e-50 | 174 |
| MS.gene049584.t1 | MTR_7g026240 | 66.667 | 132 | 37 | 1 | 395 | 526 | 208 | 332 | 1.29e-49 | 174 |
| MS.gene049584.t1 | MTR_7g026240 | 48.223 | 197 | 80 | 6 | 1 | 185 | 61 | 247 | 2.94e-45 | 162 |
| MS.gene049584.t1 | MTR_3g436180 | 48.969 | 194 | 87 | 2 | 1 | 188 | 110 | 297 | 1.86e-49 | 173 |
| MS.gene049584.t1 | MTR_3g062390 | 55.080 | 187 | 64 | 6 | 60 | 240 | 1 | 173 | 1.88e-49 | 168 |
| MS.gene049584.t1 | MTR_3g466610 | 39.441 | 322 | 154 | 11 | 3 | 308 | 11 | 307 | 9.85e-47 | 173 |
| MS.gene049584.t1 | MTR_3g464870 | 40.397 | 302 | 141 | 9 | 1 | 287 | 1212 | 1489 | 9.36e-46 | 173 |
| MS.gene049584.t1 | MTR_3g069220 | 71.963 | 107 | 28 | 1 | 345 | 451 | 33 | 137 | 9.48e-46 | 157 |
| MS.gene049584.t1 | MTR_1147s0010 | 53.529 | 170 | 56 | 3 | 345 | 514 | 14 | 160 | 1.34e-44 | 155 |
| MS.gene049584.t1 | MTR_3g466590 | 61.151 | 139 | 47 | 2 | 1 | 132 | 9 | 147 | 1.10e-43 | 164 |
| MS.gene049584.t1 | MTR_3g466530 | 55.128 | 156 | 57 | 4 | 1 | 152 | 225 | 371 | 1.15e-42 | 162 |
| MS.gene049584.t1 | MTR_3g048593 | 61.429 | 140 | 44 | 3 | 1 | 134 | 81 | 216 | 1.22e-41 | 152 |
| MS.gene049584.t1 | MTR_3g031750 | 40.187 | 321 | 109 | 12 | 53 | 342 | 1441 | 1709 | 9.31e-40 | 155 |
| MS.gene049584.t1 | MTR_3g063320 | 83.750 | 80 | 13 | 0 | 447 | 526 | 60 | 139 | 8.68e-38 | 135 |
| MS.gene049584.t1 | MTR_3g464820 | 57.812 | 128 | 46 | 3 | 1 | 124 | 46 | 169 | 4.08e-37 | 135 |
| MS.gene049584.t1 | MTR_3g466550 | 70.330 | 91 | 27 | 0 | 436 | 526 | 22 | 112 | 1.21e-36 | 132 |
| MS.gene049584.t1 | MTR_3g048690 | 50.000 | 188 | 34 | 3 | 255 | 431 | 1117 | 1255 | 1.34e-36 | 145 |
| MS.gene049584.t1 | MTR_2g450490 | 70.330 | 91 | 27 | 0 | 436 | 526 | 180 | 270 | 3.07e-35 | 133 |
| MS.gene049584.t1 | MTR_2g450490 | 36.842 | 171 | 79 | 2 | 194 | 339 | 1 | 167 | 7.90e-17 | 81.3 |
| MS.gene049584.t1 | MTR_2g450480 | 72.289 | 83 | 17 | 2 | 1 | 77 | 1 | 83 | 1.40e-25 | 110 |
| MS.gene049584.t1 | MTR_1g031830 | 32.979 | 188 | 104 | 6 | 1 | 177 | 1242 | 1418 | 1.51e-18 | 90.1 |
| MS.gene049584.t1 | MTR_5g085400 | 31.408 | 277 | 133 | 13 | 3 | 268 | 1384 | 1614 | 9.54e-18 | 87.8 |
| MS.gene049584.t1 | MTR_3g055210 | 39.535 | 129 | 68 | 5 | 1 | 119 | 1028 | 1156 | 6.27e-15 | 78.6 |
| MS.gene049584.t1 | MTR_3g055230 | 36.800 | 125 | 67 | 4 | 7 | 119 | 1097 | 1221 | 1.71e-13 | 73.9 |
| MS.gene049584.t1 | MTR_3g055230 | 36.800 | 125 | 67 | 4 | 7 | 119 | 1097 | 1221 | 1.82e-13 | 73.9 |
| MS.gene049584.t1 | MTR_3g055230 | 36.800 | 125 | 67 | 4 | 7 | 119 | 1097 | 1221 | 2.13e-13 | 73.6 |
| MS.gene049584.t1 | MTR_8g464870 | 31.452 | 124 | 80 | 3 | 1 | 119 | 1085 | 1208 | 1.29e-12 | 71.2 |
| MS.gene049584.t1 | MTR_7g068110 | 27.160 | 162 | 116 | 1 | 365 | 524 | 57 | 218 | 4.28e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAAGAGCTTCCCAATTT+AGG | 0.116348 | 3.2:+58463763 | MS.gene049584:CDS |
| TATCACTAGAGCCCCTAAAT+TGG | 0.249955 | 3.2:-58463776 | None:intergenic |
| GAAAGTCTCCAAAGCTGTTT+TGG | 0.255195 | 3.2:+58466778 | MS.gene049584:CDS |
| GTAAAGAGCTTCCCAATTTA+GGG | 0.266047 | 3.2:+58463764 | MS.gene049584:CDS |
| AGCATCCTTCAGTTCTTCTA+AGG | 0.267895 | 3.2:+58466426 | MS.gene049584:CDS |
| TTCAATAGCCAAATGCTTCT+TGG | 0.280176 | 3.2:-58466372 | None:intergenic |
| AGCTCTTTACATATGGATAT+TGG | 0.291486 | 3.2:-58463751 | None:intergenic |
| GAATATTATTGAAGATGATT+TGG | 0.296996 | 3.2:+58463645 | MS.gene049584:CDS |
| AATAGAAGAGGTTATTGATT+TGG | 0.298452 | 3.2:-58466177 | None:intergenic |
| TCATGAGAAGGTTCGACATT+AGG | 0.299217 | 3.2:-58465221 | None:intergenic |
| GACTTCGAAAATGATATTTC+TGG | 0.306919 | 3.2:+58463994 | MS.gene049584:CDS |
| CAAATTACCTCTGAATTTGT+TGG | 0.354731 | 3.2:-58465035 | None:intergenic |
| ATTACAAGTATCGTGGCCTT+TGG | 0.364565 | 3.2:-58464764 | None:intergenic |
| GATAAGAGAAGCAGATAAGA+TGG | 0.381205 | 3.2:+58463795 | MS.gene049584:CDS |
| ATTGGGAAGCTCTTTACATA+TGG | 0.383558 | 3.2:-58463758 | None:intergenic |
| ATTGATGACTGAACAACAAA+TGG | 0.392511 | 3.2:+58465169 | MS.gene049584:CDS |
| GCTGAAACCAGAGATAGTTT+TGG | 0.392628 | 3.2:-58463961 | None:intergenic |
| CTTTGGGAAGCATGTCTTTG+AGG | 0.397922 | 3.2:-58463680 | None:intergenic |
| CTTGACAATAGTGTCAAGTT+TGG | 0.407547 | 3.2:+58464018 | MS.gene049584:CDS |
| CATCCAATGCACTATGCGTT+TGG | 0.420595 | 3.2:-58466517 | None:intergenic |
| GAATTCCCTGGTCATGATAG+AGG | 0.420854 | 3.2:-58463900 | None:intergenic |
| GAGACTCTCCAAAACAGCTT+TGG | 0.429080 | 3.2:-58466786 | None:intergenic |
| GAATTGTCCAAAACTATCTC+TGG | 0.436112 | 3.2:+58463954 | MS.gene049584:CDS |
| CATAGTGCATTGGATGTGTT+AGG | 0.440608 | 3.2:+58466524 | MS.gene049584:CDS |
| ATCACTAGAGCCCCTAAATT+GGG | 0.450299 | 3.2:-58463775 | None:intergenic |
| TTGATGACTGAACAACAAAT+GGG | 0.456653 | 3.2:+58465170 | MS.gene049584:CDS |
| TATAGTCTCCAAGAAGCATT+TGG | 0.462591 | 3.2:+58466364 | MS.gene049584:CDS |
| AATATGTTGATGTTAAAATC+TGG | 0.463166 | 3.2:+58465948 | MS.gene049584:CDS |
| TTCATTGAGTAGCAGATACA+AGG | 0.465388 | 3.2:+58466454 | MS.gene049584:CDS |
| TATTATTGAAGATGATTTGG+AGG | 0.465895 | 3.2:+58463648 | MS.gene049584:CDS |
| TAGATCAGCTAGGCAGTTGT+AGG | 0.469552 | 3.2:-58466483 | None:intergenic |
| ACTTCAGTGATTTCTGAACT+TGG | 0.473853 | 3.2:-58464793 | None:intergenic |
| TATCTTGGCATTAGCTGATG+TGG | 0.478426 | 3.2:-58465605 | None:intergenic |
| CAGCTTGAAATTGAATTCCC+TGG | 0.479469 | 3.2:-58463912 | None:intergenic |
| TTCTTTCGTGACACGCTGCT+CGG | 0.483183 | 3.2:-58466690 | None:intergenic |
| GCTGCTTTAAGTGCCCCTCT+TGG | 0.505217 | 3.2:+58466842 | MS.gene049584:CDS |
| GAACTGAAGGATGCTTAACT+AGG | 0.520733 | 3.2:-58466418 | None:intergenic |
| CCCTGGTCATGATAGAGGCT+TGG | 0.522382 | 3.2:-58463895 | None:intergenic |
| AGAAGAACTTAAATTTGAGA+AGG | 0.524158 | 3.2:-58466315 | None:intergenic |
| ACACGAGTTGACTTCTTCAC+AGG | 0.531013 | 3.2:+58464831 | MS.gene049584:CDS |
| ATGGGGCAACAACGTCGACT+TGG | 0.532933 | 3.2:+58465188 | MS.gene049584:CDS |
| GCATCCTTCAGTTCTTCTAA+GGG | 0.535706 | 3.2:+58466427 | MS.gene049584:CDS |
| ACCAAGCCTCTATCATGACC+AGG | 0.536556 | 3.2:+58463894 | MS.gene049584:CDS |
| AGAAACACTAATGATGATCA+AGG | 0.542170 | 3.2:+58465980 | MS.gene049584:CDS |
| CCAATGCACTATGCGTTTGG+AGG | 0.545224 | 3.2:-58466514 | None:intergenic |
| AGATAGTCTAATAGCCAAGA+GGG | 0.546488 | 3.2:-58466856 | None:intergenic |
| TGAATATCTTCAGCAAATCC+AGG | 0.551133 | 3.2:-58464723 | None:intergenic |
| TGTTGATGTTAAAATCTGGC+AGG | 0.556759 | 3.2:+58465952 | MS.gene049584:CDS |
| ATTGAAATAAGTGTTGAAGA+AGG | 0.557861 | 3.2:+58465580 | MS.gene049584:CDS |
| CCTCCAAACGCATAGTGCAT+TGG | 0.560839 | 3.2:+58466514 | MS.gene049584:CDS |
| GAAGAACTTAAATTTGAGAA+GGG | 0.566994 | 3.2:-58466314 | None:intergenic |
| TTACAAGATGTGCGCAAATG+TGG | 0.575595 | 3.2:+58466575 | MS.gene049584:CDS |
| GTGTCCCTTAGAAGAACTGA+AGG | 0.582239 | 3.2:-58466431 | None:intergenic |
| TTTAACATCAACATATTGAG+TGG | 0.585530 | 3.2:-58465942 | None:intergenic |
| ATACTGAGATGTAATAGAAG+AGG | 0.592748 | 3.2:-58466189 | None:intergenic |
| AATAATACCAACAAATTCAG+AGG | 0.595924 | 3.2:+58465028 | MS.gene049584:CDS |
| GAAGAAATATTTGCAAGTGA+AGG | 0.597424 | 3.2:+58463817 | MS.gene049584:CDS |
| GATATTCATTACAAGTATCG+TGG | 0.613358 | 3.2:-58464771 | None:intergenic |
| TCTGATGTCATCTCTTGTCG+AGG | 0.619247 | 3.2:-58465002 | None:intergenic |
| TAAAGAGCTTCCCAATTTAG+GGG | 0.634068 | 3.2:+58463765 | MS.gene049584:CDS |
| AAGATAGTCTAATAGCCAAG+AGG | 0.657497 | 3.2:-58466857 | None:intergenic |
| AATAGTGTCAAGTTTGGCAA+CGG | 0.661102 | 3.2:+58464024 | MS.gene049584:CDS |
| TCATTGAGTAGCAGATACAA+GGG | 0.665656 | 3.2:+58466455 | MS.gene049584:CDS |
| CATGTACATGATGAGTCCAA+AGG | 0.672333 | 3.2:+58464748 | MS.gene049584:CDS |
| CCAAGCCTCTATCATGACCA+GGG | 0.673362 | 3.2:+58463895 | MS.gene049584:CDS |
| TGATGACTGAACAACAAATG+GGG | 0.678501 | 3.2:+58465171 | MS.gene049584:CDS |
| GATAGTCTAATAGCCAAGAG+GGG | 0.686239 | 3.2:-58466855 | None:intergenic |
| ATAACTCAACAAATTCAGAG+TGG | 0.723049 | 3.2:-58466553 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTATTATTCTTATG+AGG | + | chr3.2:58464655-58464674 | MS.gene049584:intron | 10.0% |
| !!! | CTCTTATATAATTATATTTT+GGG | - | chr3.2:58464411-58464430 | None:intergenic | 10.0% |
| !! | AAAAGAATACAAGAAAAATA+AGG | - | chr3.2:58465491-58465510 | None:intergenic | 15.0% |
| !! | AAAGAATACAAGAAAAATAA+GGG | - | chr3.2:58465490-58465509 | None:intergenic | 15.0% |
| !! | TGATATTTAGTTATCAATAA+TGG | - | chr3.2:58465123-58465142 | None:intergenic | 15.0% |
| !!! | ATAGGTATTTCTAAAATATA+AGG | + | chr3.2:58464205-58464224 | MS.gene049584:intron | 15.0% |
| !!! | GCTCTTATATAATTATATTT+TGG | - | chr3.2:58464412-58464431 | None:intergenic | 15.0% |
| !!! | TAGGTATTTCTAAAATATAA+GGG | + | chr3.2:58464206-58464225 | MS.gene049584:intron | 15.0% |
| !! | AAGAATACAAGAAAAATAAG+GGG | - | chr3.2:58465489-58465508 | None:intergenic | 20.0% |
| !! | AATATGTTGATGTTAAAATC+TGG | + | chr3.2:58465948-58465967 | MS.gene049584:CDS | 20.0% |
| !! | AATTCATATGTTCTTATTAC+AGG | + | chr3.2:58465145-58465164 | MS.gene049584:intron | 20.0% |
| !! | ACATACATTTAATATAAAGC+AGG | + | chr3.2:58465555-58465574 | MS.gene049584:intron | 20.0% |
| !! | ACATTGAAAATGACAATTTA+CGG | + | chr3.2:58464609-58464628 | MS.gene049584:intron | 20.0% |
| !! | AGCTAAAAATGAAATGTTTA+AGG | + | chr3.2:58465282-58465301 | MS.gene049584:intron | 20.0% |
| !! | ATATTATTTCCTATACTTTC+AGG | + | chr3.2:58466288-58466307 | MS.gene049584:intron | 20.0% |
| !! | CAAATATAGAAATAACTCAT+TGG | - | chr3.2:58464349-58464368 | None:intergenic | 20.0% |
| !! | CAATTGTTTATATAGTCAAA+TGG | - | chr3.2:58464159-58464178 | None:intergenic | 20.0% |
| !! | CATACATTTAATATAAAGCA+GGG | + | chr3.2:58465556-58465575 | MS.gene049584:intron | 20.0% |
| !! | GAATATTATTGAAGATGATT+TGG | + | chr3.2:58463645-58463664 | MS.gene049584:CDS | 20.0% |
| !! | TAATGAAATAAGCTTATTTC+AGG | + | chr3.2:58465825-58465844 | MS.gene049584:intron | 20.0% |
| !! | TATTATTTCCTATACTTTCA+GGG | + | chr3.2:58466289-58466308 | MS.gene049584:intron | 20.0% |
| !! | TGATATAAAGAGAACATAAT+TGG | + | chr3.2:58465744-58465763 | MS.gene049584:intron | 20.0% |
| !! | TTGTATTCAATATTCATATG+CGG | - | chr3.2:58464885-58464904 | None:intergenic | 20.0% |
| !!! | AAATATTTTGAATCAACATG+TGG | + | chr3.2:58466736-58466755 | MS.gene049584:CDS | 20.0% |
| !!! | AAATTGTCATTTTCAATGTT+GGG | - | chr3.2:58464608-58464627 | None:intergenic | 20.0% |
| !!! | AAATTTGTTATTCGATGAAT+TGG | + | chr3.2:58464521-58464540 | MS.gene049584:intron | 20.0% |
| !!! | AATACTACACATTTTAGATT+TGG | - | chr3.2:58463865-58463884 | None:intergenic | 20.0% |
| !!! | ATTACATTATTTTCATGAGA+AGG | - | chr3.2:58465236-58465255 | None:intergenic | 20.0% |
| !!! | TAAATTGTCATTTTCAATGT+TGG | - | chr3.2:58464609-58464628 | None:intergenic | 20.0% |
| !!! | TTATTAGAGATGAATTTTAG+AGG | - | chr3.2:58464130-58464149 | None:intergenic | 20.0% |
| !!! | TTCTTTCATATGAATTTTGT+AGG | + | chr3.2:58465904-58465923 | MS.gene049584:intron | 20.0% |
| ! | AAATGCATTGCAAAAACTAT+TGG | + | chr3.2:58466664-58466683 | MS.gene049584:CDS | 25.0% |
| ! | AACATGACAACAATATTTGA+AGG | - | chr3.2:58465679-58465698 | None:intergenic | 25.0% |
| ! | AATAATACCAACAAATTCAG+AGG | + | chr3.2:58465028-58465047 | MS.gene049584:CDS | 25.0% |
| ! | AATTGAATCTTCTATAGTAG+TGG | + | chr3.2:58464174-58464193 | MS.gene049584:intron | 25.0% |
| ! | AGAAGAACTTAAATTTGAGA+AGG | - | chr3.2:58466318-58466337 | None:intergenic | 25.0% |
| ! | AGTTCAACTTCAAAAAGAAA+AGG | - | chr3.2:58466052-58466071 | None:intergenic | 25.0% |
| ! | ATTATTTCCTATACTTTCAG+GGG | + | chr3.2:58466290-58466309 | MS.gene049584:intron | 25.0% |
| ! | GAAGAACTTAAATTTGAGAA+GGG | - | chr3.2:58466317-58466336 | None:intergenic | 25.0% |
| ! | GTTCAACTTCAAAAAGAAAA+GGG | - | chr3.2:58466051-58466070 | None:intergenic | 25.0% |
| ! | TAACTGATCTTTATATGCAA+GGG | - | chr3.2:58465077-58465096 | None:intergenic | 25.0% |
| ! | TATAATTATATAAGAGCTCG+TGG | + | chr3.2:58464415-58464434 | MS.gene049584:intron | 25.0% |
| ! | TTAACTGATCTTTATATGCA+AGG | - | chr3.2:58465078-58465097 | None:intergenic | 25.0% |
| ! | TTGATTAAAATGCATTGCAT+TGG | - | chr3.2:58464911-58464930 | None:intergenic | 25.0% |
| ! | TTTAACATCAACATATTGAG+TGG | - | chr3.2:58465945-58465964 | None:intergenic | 25.0% |
| !! | AATAGAAGAGGTTATTGATT+TGG | - | chr3.2:58466180-58466199 | None:intergenic | 25.0% |
| !! | ATATGAATTTTGTAGGAAGA+TGG | + | chr3.2:58465911-58465930 | MS.gene049584:intron | 25.0% |
| !! | ATTTTTGATGCAGAAAGAAA+TGG | + | chr3.2:58464938-58464957 | MS.gene049584:intron | 25.0% |
| !! | TATAGATTTTAGATTGATCC+TGG | + | chr3.2:58464705-58464724 | MS.gene049584:intron | 25.0% |
| !! | TATTATTGAAGATGATTTGG+AGG | + | chr3.2:58463648-58463667 | MS.gene049584:CDS | 25.0% |
| !!! | AATAAACTCACTTTTGAATG+AGG | - | chr3.2:58465643-58465662 | None:intergenic | 25.0% |
| !!! | AATGTGGTTTTGATAAGAAA+TGG | + | chr3.2:58466591-58466610 | MS.gene049584:CDS | 25.0% |
| !!! | ATTGAAATAAGTGTTGAAGA+AGG | + | chr3.2:58465580-58465599 | MS.gene049584:CDS | 25.0% |
| !!! | GTATTTCTAAAATATAAGGG+TGG | + | chr3.2:58464209-58464228 | MS.gene049584:intron | 25.0% |
| !!! | TGATCAACAGTTTTTTCAAT+AGG | - | chr3.2:58465355-58465374 | None:intergenic | 25.0% |
| !!! | TTTTGAGAGAATTGTAAATC+AGG | - | chr3.2:58466647-58466666 | None:intergenic | 25.0% |
| AAAAACTGTTGATCACAAGA+AGG | + | chr3.2:58465360-58465379 | MS.gene049584:intron | 30.0% | |
| ACAGCAACAAAAACATATCA+AGG | + | chr3.2:58464099-58464118 | MS.gene049584:intron | 30.0% | |
| AGAAACACTAATGATGATCA+AGG | + | chr3.2:58465980-58465999 | MS.gene049584:CDS | 30.0% | |
| AGCTCTTTACATATGGATAT+TGG | - | chr3.2:58463754-58463773 | None:intergenic | 30.0% | |
| ATAACTCAACAAATTCAGAG+TGG | - | chr3.2:58466556-58466575 | None:intergenic | 30.0% | |
| ATACTGAGATGTAATAGAAG+AGG | - | chr3.2:58466192-58466211 | None:intergenic | 30.0% | |
| ATTAGTTGCTCCTAAACAAA+AGG | + | chr3.2:58465458-58465477 | MS.gene049584:intron | 30.0% | |
| ATTTACGGTTGAATTGAAAG+TGG | + | chr3.2:58464624-58464643 | MS.gene049584:intron | 30.0% | |
| ATTTCTCTTACAGCTTGTAT+AGG | - | chr3.2:58464446-58464465 | None:intergenic | 30.0% | |
| CAAATTACCTCTGAATTTGT+TGG | - | chr3.2:58465038-58465057 | None:intergenic | 30.0% | |
| GAAGAAATATTTGCAAGTGA+AGG | + | chr3.2:58463817-58463836 | MS.gene049584:CDS | 30.0% | |
| GACTTCGAAAATGATATTTC+TGG | + | chr3.2:58463994-58464013 | MS.gene049584:CDS | 30.0% | |
| TAGAGAAACTGACAAAAGAT+GGG | - | chr3.2:58466084-58466103 | None:intergenic | 30.0% | |
| TTAGAGAAACTGACAAAAGA+TGG | - | chr3.2:58466085-58466104 | None:intergenic | 30.0% | |
| TTAGGAGCAACTAATTGTAT+AGG | - | chr3.2:58465453-58465472 | None:intergenic | 30.0% | |
| TTCAATATTCATATGCGGTT+AGG | - | chr3.2:58464880-58464899 | None:intergenic | 30.0% | |
| ! | AGGTGAAAGTATATATAGTG+AGG | + | chr3.2:58465845-58465864 | MS.gene049584:intron | 30.0% |
| ! | AGGTGATGAAGTTTTTATCT+TGG | - | chr3.2:58465623-58465642 | None:intergenic | 30.0% |
| ! | AGTCTACTTCTTTTCACATT+TGG | + | chr3.2:58465767-58465786 | MS.gene049584:intron | 30.0% |
| ! | ATTGATGACTGAACAACAAA+TGG | + | chr3.2:58465169-58465188 | MS.gene049584:CDS | 30.0% |
| ! | GATATTCATTACAAGTATCG+TGG | - | chr3.2:58464774-58464793 | None:intergenic | 30.0% |
| ! | TACTGAAGATCAGTTTTCAA+AGG | + | chr3.2:58466136-58466155 | MS.gene049584:CDS | 30.0% |
| ! | TTGATGACTGAACAACAAAT+GGG | + | chr3.2:58465170-58465189 | MS.gene049584:CDS | 30.0% |
| !! | GGAATTTTAATAGATCAGCT+AGG | - | chr3.2:58466496-58466515 | None:intergenic | 30.0% |
| !! | TTAGCTCTATATGCACAATT+AGG | - | chr3.2:58465268-58465287 | None:intergenic | 30.0% |
| !! | TTCATTAACTTGTGCCTTAA+GGG | + | chr3.2:58464370-58464389 | MS.gene049584:intron | 30.0% |
| !! | TTTCATTAACTTGTGCCTTA+AGG | + | chr3.2:58464369-58464388 | MS.gene049584:intron | 30.0% |
| !!! | ACAACAAGTGTTTTTAGCTT+TGG | - | chr3.2:58463700-58463719 | None:intergenic | 30.0% |
| !!! | AGCACAAGTTTTAGAAACTA+AGG | + | chr3.2:58466820-58466839 | MS.gene049584:CDS | 30.0% |
| !!! | CAACAAGTGTTTTTAGCTTT+GGG | - | chr3.2:58463699-58463718 | None:intergenic | 30.0% |
| !!! | TGGTTTTGATAAGAAATGGT+TGG | + | chr3.2:58466595-58466614 | MS.gene049584:CDS | 30.0% |
| AATAGTGTCAAGTTTGGCAA+CGG | + | chr3.2:58464024-58464043 | MS.gene049584:CDS | 35.0% | |
| ACTTCAGTGATTTCTGAACT+TGG | - | chr3.2:58464796-58464815 | None:intergenic | 35.0% | |
| AGCAAGAAAATACCTTCTGT+AGG | - | chr3.2:58466224-58466243 | None:intergenic | 35.0% | |
| ATAGTAGTGGTATGTGTGAT+AGG | + | chr3.2:58464187-58464206 | MS.gene049584:intron | 35.0% | |
| ATTGGGAAGCTCTTTACATA+TGG | - | chr3.2:58463761-58463780 | None:intergenic | 35.0% | |
| CTCTTGTAAATGAAATCGCA+TGG | - | chr3.2:58465718-58465737 | None:intergenic | 35.0% | |
| CTTGACAATAGTGTCAAGTT+TGG | + | chr3.2:58464018-58464037 | MS.gene049584:CDS | 35.0% | |
| GAATTGTCCAAAACTATCTC+TGG | + | chr3.2:58463954-58463973 | MS.gene049584:CDS | 35.0% | |
| GATAAGAGAAGCAGATAAGA+TGG | + | chr3.2:58463795-58463814 | MS.gene049584:CDS | 35.0% | |
| GTAAAGAGCTTCCCAATTTA+GGG | + | chr3.2:58463764-58463783 | MS.gene049584:CDS | 35.0% | |
| TAAAGAGCTTCCCAATTTAG+GGG | + | chr3.2:58463765-58463784 | MS.gene049584:CDS | 35.0% | |
| TCAAAAAGAAAAGGGTGATG+AGG | - | chr3.2:58466043-58466062 | None:intergenic | 35.0% | |
| TCATTGAGTAGCAGATACAA+GGG | + | chr3.2:58466455-58466474 | MS.gene049584:CDS | 35.0% | |
| TGAATATCTTCAGCAAATCC+AGG | - | chr3.2:58464726-58464745 | None:intergenic | 35.0% | |
| TGATGACTGAACAACAAATG+GGG | + | chr3.2:58465171-58465190 | MS.gene049584:CDS | 35.0% | |
| TGTAAAGAGCTTCCCAATTT+AGG | + | chr3.2:58463763-58463782 | MS.gene049584:CDS | 35.0% | |
| TGTAAGAGAAATGCTAACGA+GGG | + | chr3.2:58464454-58464473 | MS.gene049584:intron | 35.0% | |
| TGTATAGGTAGCTCATTCTT+TGG | - | chr3.2:58465438-58465457 | None:intergenic | 35.0% | |
| TGTTGATGTTAAAATCTGGC+AGG | + | chr3.2:58465952-58465971 | MS.gene049584:CDS | 35.0% | |
| TTCAATAGCCAAATGCTTCT+TGG | - | chr3.2:58466375-58466394 | None:intergenic | 35.0% | |
| TTCATTGAGTAGCAGATACA+AGG | + | chr3.2:58466454-58466473 | MS.gene049584:CDS | 35.0% | |
| TTTCATGATGTGAAATCAGC+TGG | + | chr3.2:58465327-58465346 | MS.gene049584:intron | 35.0% | |
| TTTCTTAACATGTGCCCTAA+GGG | - | chr3.2:58464247-58464266 | None:intergenic | 35.0% | |
| ! | CAAATTCAGAGGTAATTTGC+AGG | + | chr3.2:58465039-58465058 | MS.gene049584:intron | 35.0% |
| !! | AATGTTAACTTGTGCCCTTA+AGG | - | chr3.2:58464387-58464406 | None:intergenic | 35.0% |
| !! | ATTCTTTGGTGTTTCTGAGA+TGG | - | chr3.2:58465424-58465443 | None:intergenic | 35.0% |
| !! | TAACTTCCTTAAAGAGTGTC+CGG | - | chr3.2:58464483-58464502 | None:intergenic | 35.0% |
| !! | TATAGTCTCCAAGAAGCATT+TGG | + | chr3.2:58466364-58466383 | MS.gene049584:CDS | 35.0% |
| !!! | TCAATGTTGGGTCACTTTTA+AGG | - | chr3.2:58464596-58464615 | None:intergenic | 35.0% |
| AAGGTGAAGACTCTTTGGAT+CGG | + | chr3.2:58465999-58466018 | MS.gene049584:intron | 40.0% | |
| AGCATCCTTCAGTTCTTCTA+AGG | + | chr3.2:58466426-58466445 | MS.gene049584:CDS | 40.0% | |
| ATAATGGCCATTACTCGCTA+AGG | - | chr3.2:58465107-58465126 | None:intergenic | 40.0% | |
| ATCACTAGAGCCCCTAAATT+GGG | - | chr3.2:58463778-58463797 | None:intergenic | 40.0% | |
| CAGCTTGAAATTGAATTCCC+TGG | - | chr3.2:58463915-58463934 | None:intergenic | 40.0% | |
| CATAGTGCATTGGATGTGTT+AGG | + | chr3.2:58466524-58466543 | MS.gene049584:CDS | 40.0% | |
| CATGTACATGATGAGTCCAA+AGG | + | chr3.2:58464748-58464767 | MS.gene049584:CDS | 40.0% | |
| CTGTAAGAGAAATGCTAACG+AGG | + | chr3.2:58464453-58464472 | MS.gene049584:intron | 40.0% | |
| GAACTGAAGGATGCTTAACT+AGG | - | chr3.2:58466421-58466440 | None:intergenic | 40.0% | |
| GCATCCTTCAGTTCTTCTAA+GGG | + | chr3.2:58466427-58466446 | MS.gene049584:CDS | 40.0% | |
| GTTTCTTAACATGTGCCCTA+AGG | - | chr3.2:58464248-58464267 | None:intergenic | 40.0% | |
| TATCACTAGAGCCCCTAAAT+TGG | - | chr3.2:58463779-58463798 | None:intergenic | 40.0% | |
| TATCCTTCAAAGCCTACAGA+AGG | + | chr3.2:58466209-58466228 | MS.gene049584:intron | 40.0% | |
| TATCTTGGCATTAGCTGATG+TGG | - | chr3.2:58465608-58465627 | None:intergenic | 40.0% | |
| TCATGAGAAGGTTCGACATT+AGG | - | chr3.2:58465224-58465243 | None:intergenic | 40.0% | |
| TGATCAAGGTGAAGACTCTT+TGG | + | chr3.2:58465994-58466013 | MS.gene049584:intron | 40.0% | |
| TTACAAGATGTGCGCAAATG+TGG | + | chr3.2:58466575-58466594 | MS.gene049584:CDS | 40.0% | |
| ! | ATACCTTCTGTAGGCTTTGA+AGG | - | chr3.2:58466215-58466234 | None:intergenic | 40.0% |
| ! | ATTACAAGTATCGTGGCCTT+TGG | - | chr3.2:58464767-58464786 | None:intergenic | 40.0% |
| ! | GAAAGTCTCCAAAGCTGTTT+TGG | + | chr3.2:58466778-58466797 | MS.gene049584:CDS | 40.0% |
| ! | GCTGAAACCAGAGATAGTTT+TGG | - | chr3.2:58463964-58463983 | None:intergenic | 40.0% |
| ATATGCAAGGGATCTTGACC+TGG | - | chr3.2:58465065-58465084 | None:intergenic | 45.0% | |
| ATCTGAGCCTTAGCGAGTAA+TGG | + | chr3.2:58465097-58465116 | MS.gene049584:intron | 45.0% | |
| CATCCAATGCACTATGCGTT+TGG | - | chr3.2:58466520-58466539 | None:intergenic | 45.0% | |
| GAATTCCCTGGTCATGATAG+AGG | - | chr3.2:58463903-58463922 | None:intergenic | 45.0% | |
| GAGACTCTCCAAAACAGCTT+TGG | - | chr3.2:58466789-58466808 | None:intergenic | 45.0% | |
| GTGTCCCTTAGAAGAACTGA+AGG | - | chr3.2:58466434-58466453 | None:intergenic | 45.0% | |
| TAGATCAGCTAGGCAGTTGT+AGG | - | chr3.2:58466486-58466505 | None:intergenic | 45.0% | |
| TCTGATGTCATCTCTTGTCG+AGG | - | chr3.2:58465005-58465024 | None:intergenic | 45.0% | |
| ! | ACACGAGTTGACTTCTTCAC+AGG | + | chr3.2:58464831-58464850 | MS.gene049584:CDS | 45.0% |
| ! | CTTTGGGAAGCATGTCTTTG+AGG | - | chr3.2:58463683-58463702 | None:intergenic | 45.0% |
| !! | AGGGGCAATGCCTTTTGTTT+AGG | - | chr3.2:58465471-58465490 | None:intergenic | 45.0% |
| !! | GGTGTTAACTTGTGCCCTTA+GGG | + | chr3.2:58464230-58464249 | MS.gene049584:intron | 45.0% |
| !! | TGGTGTTAACTTGTGCCCTT+AGG | + | chr3.2:58464229-58464248 | MS.gene049584:intron | 45.0% |
| !! | ATGTAATTATTTAAAAATAT+TGG | - | chr3.2:58464062-58464081 | None:intergenic | 5.0% |
| ACCAAGCCTCTATCATGACC+AGG | + | chr3.2:58463894-58463913 | MS.gene049584:CDS | 50.0% | |
| CCAAGCCTCTATCATGACCA+GGG | + | chr3.2:58463895-58463914 | MS.gene049584:CDS | 50.0% | |
| CCAATGCACTATGCGTTTGG+AGG | - | chr3.2:58466517-58466536 | None:intergenic | 50.0% | |
| CCTCCAAACGCATAGTGCAT+TGG | + | chr3.2:58466514-58466533 | MS.gene049584:CDS | 50.0% | |
| GAAATGCTAACGAGGGTCTC+CGG | + | chr3.2:58464461-58464480 | MS.gene049584:intron | 50.0% | |
| TTCTTTCGTGACACGCTGCT+CGG | - | chr3.2:58466693-58466712 | None:intergenic | 50.0% | |
| ! | GAAGGGTCCCCTGAAAGTAT+AGG | - | chr3.2:58466300-58466319 | None:intergenic | 50.0% |
| ! | TCAGAGGTAATTTGCAGGCC+AGG | + | chr3.2:58465044-58465063 | MS.gene049584:intron | 50.0% |
| CCCTGGTCATGATAGAGGCT+TGG | - | chr3.2:58463898-58463917 | None:intergenic | 55.0% | |
| GGGTCTCCGGACACTCTTTA+AGG | + | chr3.2:58464474-58464493 | MS.gene049584:intron | 55.0% | |
| ! | ATGGGGCAACAACGTCGACT+TGG | + | chr3.2:58465188-58465207 | MS.gene049584:CDS | 55.0% |
| ! | GCTGCTTTAAGTGCCCCTCT+TGG | + | chr3.2:58466842-58466861 | MS.gene049584:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 58463616 | 58466871 | 58463616 | ID=MS.gene049584 |
| chr3.2 | mRNA | 58463616 | 58466871 | 58463616 | ID=MS.gene049584.t1;Parent=MS.gene049584 |
| chr3.2 | exon | 58463616 | 58464045 | 58463616 | ID=MS.gene049584.t1.exon1;Parent=MS.gene049584.t1 |
| chr3.2 | CDS | 58463616 | 58464045 | 58463616 | ID=cds.MS.gene049584.t1;Parent=MS.gene049584.t1 |
| chr3.2 | exon | 58464710 | 58464852 | 58464710 | ID=MS.gene049584.t1.exon2;Parent=MS.gene049584.t1 |
| chr3.2 | CDS | 58464710 | 58464852 | 58464710 | ID=cds.MS.gene049584.t1;Parent=MS.gene049584.t1 |
| chr3.2 | exon | 58464951 | 58465049 | 58464951 | ID=MS.gene049584.t1.exon3;Parent=MS.gene049584.t1 |
| chr3.2 | CDS | 58464951 | 58465049 | 58464951 | ID=cds.MS.gene049584.t1;Parent=MS.gene049584.t1 |
| chr3.2 | exon | 58465167 | 58465250 | 58465167 | ID=MS.gene049584.t1.exon4;Parent=MS.gene049584.t1 |
| chr3.2 | CDS | 58465167 | 58465250 | 58465167 | ID=cds.MS.gene049584.t1;Parent=MS.gene049584.t1 |
| chr3.2 | exon | 58465577 | 58465651 | 58465577 | ID=MS.gene049584.t1.exon5;Parent=MS.gene049584.t1 |
| chr3.2 | CDS | 58465577 | 58465651 | 58465577 | ID=cds.MS.gene049584.t1;Parent=MS.gene049584.t1 |
| chr3.2 | exon | 58465926 | 58466001 | 58465926 | ID=MS.gene049584.t1.exon6;Parent=MS.gene049584.t1 |
| chr3.2 | CDS | 58465926 | 58466001 | 58465926 | ID=cds.MS.gene049584.t1;Parent=MS.gene049584.t1 |
| chr3.2 | exon | 58466096 | 58466207 | 58466096 | ID=MS.gene049584.t1.exon7;Parent=MS.gene049584.t1 |
| chr3.2 | CDS | 58466096 | 58466207 | 58466096 | ID=cds.MS.gene049584.t1;Parent=MS.gene049584.t1 |
| chr3.2 | exon | 58466310 | 58466871 | 58466310 | ID=MS.gene049584.t1.exon8;Parent=MS.gene049584.t1 |
| chr3.2 | CDS | 58466310 | 58466871 | 58466310 | ID=cds.MS.gene049584.t1;Parent=MS.gene049584.t1 |
| Gene Sequence |
| Protein sequence |
