Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049640.t1 | RHN68031.1 | 89.6 | 691 | 58 | 3 | 1 | 678 | 1 | 690 | 0.00E+00 | 1224.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049640.t1 | Q9SHY2 | 75.9 | 667 | 142 | 6 | 26 | 676 | 22 | 685 | 7.9e-296 | 1017.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049640.t1 | A0A396ITK6 | 89.6 | 691 | 58 | 3 | 1 | 678 | 1 | 690 | 0.0e+00 | 1224.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37726 | MS.gene049640 | PPI |
| MS.gene05216 | MS.gene049640 | PPI |
| MS.gene45566 | MS.gene049640 | PPI |
| MS.gene049640 | MS.gene57831 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049640.t1 | MTR_5g091600 | 87.590 | 693 | 60 | 5 | 1 | 678 | 1 | 682 | 0.0 | 1191 |
| MS.gene049640.t1 | MTR_3g063520 | 89.436 | 691 | 59 | 3 | 1 | 678 | 1 | 690 | 0.0 | 1174 |
| MS.gene049640.t1 | MTR_3g063490 | 83.741 | 695 | 93 | 4 | 1 | 676 | 1 | 694 | 0.0 | 1153 |
| MS.gene049640.t1 | MTR_6g077870 | 71.837 | 664 | 175 | 3 | 26 | 678 | 50 | 712 | 0.0 | 991 |
| MS.gene049640.t1 | MTR_6g077870 | 70.471 | 552 | 151 | 3 | 138 | 678 | 1 | 551 | 0.0 | 811 |
| MS.gene049640.t1 | MTR_7g028250 | 57.337 | 661 | 246 | 9 | 34 | 669 | 30 | 679 | 0.0 | 763 |
| MS.gene049640.t1 | MTR_3g092090 | 54.394 | 660 | 277 | 6 | 20 | 663 | 12 | 663 | 0.0 | 734 |
| MS.gene049640.t1 | MTR_3g092090 | 53.373 | 667 | 275 | 7 | 2 | 652 | 6 | 652 | 0.0 | 719 |
| MS.gene049640.t1 | MTR_1g007580 | 51.111 | 675 | 297 | 9 | 19 | 666 | 4 | 672 | 0.0 | 699 |
| MS.gene049640.t1 | MTR_0312s0020 | 50.830 | 663 | 303 | 7 | 20 | 666 | 17 | 672 | 0.0 | 696 |
| MS.gene049640.t1 | MTR_1g007540 | 50.830 | 663 | 303 | 7 | 20 | 666 | 17 | 672 | 0.0 | 696 |
| MS.gene049640.t1 | MTR_1g077840 | 50.151 | 662 | 307 | 7 | 20 | 665 | 25 | 679 | 0.0 | 696 |
| MS.gene049640.t1 | MTR_5g091615 | 87.500 | 160 | 20 | 0 | 515 | 674 | 59 | 218 | 7.28e-89 | 280 |
| MS.gene049640.t1 | MTR_1626s0010 | 50.424 | 236 | 113 | 2 | 207 | 442 | 4 | 235 | 4.10e-80 | 254 |
| MS.gene049640.t1 | MTR_0312s0050 | 49.593 | 123 | 51 | 3 | 16 | 127 | 1 | 123 | 4.81e-32 | 120 |
| MS.gene049640.t1 | MTR_2g083230 | 82.609 | 46 | 5 | 1 | 129 | 171 | 34 | 79 | 4.80e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049640.t1 | AT1G65730 | 75.595 | 672 | 143 | 7 | 21 | 676 | 19 | 685 | 0.0 | 1035 |
| MS.gene049640.t1 | AT3G17650 | 71.128 | 665 | 175 | 4 | 29 | 676 | 46 | 710 | 0.0 | 946 |
| MS.gene049640.t1 | AT3G17650 | 71.128 | 665 | 175 | 4 | 29 | 676 | 46 | 710 | 0.0 | 946 |
| MS.gene049640.t1 | AT1G48370 | 70.571 | 666 | 178 | 4 | 29 | 676 | 55 | 720 | 0.0 | 929 |
| MS.gene049640.t1 | AT3G27020 | 57.207 | 666 | 264 | 6 | 23 | 669 | 13 | 676 | 0.0 | 766 |
| MS.gene049640.t1 | AT1G48370 | 69.120 | 557 | 154 | 4 | 138 | 676 | 1 | 557 | 0.0 | 754 |
| MS.gene049640.t1 | AT5G53550 | 55.341 | 674 | 274 | 8 | 8 | 664 | 6 | 669 | 0.0 | 741 |
| MS.gene049640.t1 | AT5G53550 | 55.341 | 674 | 274 | 8 | 8 | 664 | 6 | 669 | 0.0 | 741 |
| MS.gene049640.t1 | AT5G53550 | 55.341 | 674 | 274 | 8 | 8 | 664 | 6 | 669 | 0.0 | 741 |
| MS.gene049640.t1 | AT5G53550 | 55.341 | 674 | 274 | 8 | 8 | 664 | 6 | 669 | 0.0 | 741 |
| MS.gene049640.t1 | AT5G53550 | 55.341 | 674 | 274 | 8 | 8 | 664 | 6 | 669 | 0.0 | 741 |
| MS.gene049640.t1 | AT5G41000 | 54.644 | 646 | 274 | 5 | 35 | 663 | 24 | 667 | 0.0 | 725 |
| MS.gene049640.t1 | AT4G24120 | 52.647 | 680 | 291 | 7 | 1 | 665 | 9 | 672 | 0.0 | 722 |
| MS.gene049640.t1 | AT5G24380 | 52.656 | 659 | 290 | 6 | 22 | 663 | 7 | 660 | 0.0 | 710 |
| MS.gene049640.t1 | AT5G41000 | 52.477 | 646 | 263 | 6 | 35 | 663 | 24 | 642 | 0.0 | 684 |
| MS.gene049640.t1 | AT5G53550 | 57.670 | 515 | 200 | 4 | 160 | 664 | 1 | 507 | 0.0 | 600 |
| MS.gene049640.t1 | AT5G41000 | 53.753 | 493 | 215 | 4 | 182 | 663 | 1 | 491 | 0.0 | 551 |
| MS.gene049640.t1 | AT5G45450 | 64.679 | 218 | 71 | 1 | 459 | 676 | 1 | 212 | 4.47e-95 | 293 |
Find 160 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTTGTTGTTAGCTTTCT+TGG | 0.055871 | 3.2:-59418262 | MS.gene049640:CDS |
| AATGTTTCTGCTGGGTTGTT+AGG | 0.216597 | 3.2:-59418692 | MS.gene049640:CDS |
| GAAGCTTGATATTGTTTATT+TGG | 0.238786 | 3.2:-59416172 | MS.gene049640:CDS |
| GTTCTTGGCACAACTCTTAT+AGG | 0.241739 | 3.2:-59417013 | MS.gene049640:CDS |
| GCTAAGGTTGATAAGTTCTT+AGG | 0.244541 | 3.2:-59415993 | MS.gene049640:CDS |
| GAGGAGATCTCTGTGGAAAA+AGG | 0.248700 | 3.2:-59418851 | MS.gene049640:CDS |
| ATGTTTGTGAGCCAAGTTAT+TGG | 0.272519 | 3.2:-59416515 | MS.gene049640:CDS |
| GCCGGTGCCATGATTATTAA+TGG | 0.276061 | 3.2:-59416302 | MS.gene049640:CDS |
| TACAACTTTGGGAAAGTTCT+TGG | 0.281237 | 3.2:-59417028 | MS.gene049640:CDS |
| TGATATGTGGAGATGGAATT+TGG | 0.283833 | 3.2:-59416094 | MS.gene049640:CDS |
| AACGAAATATTGGTTATATA+TGG | 0.289135 | 3.2:+59417490 | None:intergenic |
| ACCGATCAACAACGAAATAT+TGG | 0.300050 | 3.2:+59417480 | None:intergenic |
| CCCTCATGGTTCGCAATTGC+AGG | 0.302996 | 3.2:-59416863 | MS.gene049640:CDS |
| GTATTCTCCTGTCTGGTAAA+AGG | 0.329015 | 3.2:+59418611 | None:intergenic |
| CCTTCGTTGAATGTTTCTGC+TGG | 0.339721 | 3.2:-59418701 | MS.gene049640:CDS |
| AAATTAGCCATCTTCGCTAT+TGG | 0.346002 | 3.2:-59416677 | MS.gene049640:CDS |
| TGATCGGTGGAATTCTTTCA+TGG | 0.350906 | 3.2:-59417465 | MS.gene049640:CDS |
| CCATCTTCGCTATTGGTGCT+TGG | 0.352652 | 3.2:-59416670 | MS.gene049640:CDS |
| TTATTTGGCAGAAGGTTGAT+AGG | 0.352931 | 3.2:-59416157 | MS.gene049640:CDS |
| AAGTAGCTTCCAATGTAAAA+TGG | 0.358086 | 3.2:+59416215 | None:intergenic |
| ATAGGCATAGCAATGATTCT+TGG | 0.363000 | 3.2:-59417061 | MS.gene049640:CDS |
| TTTGCAAACTTCCCCACATT+TGG | 0.363476 | 3.2:-59417812 | MS.gene049640:CDS |
| AGGGTTAAGGCTGATGCATT+TGG | 0.365863 | 3.2:-59416137 | MS.gene049640:CDS |
| TAGGTTTGTATAAACAATTA+TGG | 0.370836 | 3.2:-59416994 | MS.gene049640:CDS |
| GGGTTTGGTAGCTACTTGTT+TGG | 0.371080 | 3.2:-59418364 | MS.gene049640:CDS |
| GACAAGAATTTCAAGCAAAT+AGG | 0.372634 | 3.2:+59416029 | None:intergenic |
| TGGCTATTCTACAACGCTTT+CGG | 0.377582 | 3.2:-59416455 | MS.gene049640:CDS |
| GTAGGGGAGAGAGGAGCATT+TGG | 0.378591 | 3.2:+59416938 | None:intergenic |
| GACACCACATGCTGCTAAAC+CGG | 0.383267 | 3.2:+59416619 | None:intergenic |
| TGGCTCACAAACATGGATTT+CGG | 0.390640 | 3.2:+59416524 | None:intergenic |
| GCCAATGATGTTAAGAGTCT+TGG | 0.398551 | 3.2:-59418307 | MS.gene049640:CDS |
| GTGATGGTCTATACAACTTT+GGG | 0.399347 | 3.2:-59417039 | MS.gene049640:CDS |
| CTTGCTTGTGTAGGTGGGTT+TGG | 0.399991 | 3.2:-59418379 | MS.gene049640:intron |
| GGTGATGGTCTATACAACTT+TGG | 0.401168 | 3.2:-59417040 | MS.gene049640:CDS |
| GTTTGGCACCTTCTGATGTA+TGG | 0.401190 | 3.2:+59417933 | None:intergenic |
| ATGAAGTTGAATCTCACAAC+TGG | 0.401497 | 3.2:-59418731 | MS.gene049640:CDS |
| TTCGCTATTGGTGCTTGGGC+AGG | 0.404021 | 3.2:-59416665 | MS.gene049640:CDS |
| TTTCGATAAACGAGGGCGTT+AGG | 0.407080 | 3.2:+59416398 | None:intergenic |
| TGTTCCTACGTGGCAGAAAC+AGG | 0.407557 | 3.2:-59418813 | MS.gene049640:CDS |
| CTGCTTTGTTTGAGATCAGC+AGG | 0.407652 | 3.2:+59417397 | None:intergenic |
| CATCTTCGCTATTGGTGCTT+GGG | 0.418097 | 3.2:-59416669 | MS.gene049640:CDS |
| GATGTTAAGAGTCTTGGTTT+AGG | 0.418370 | 3.2:-59418301 | MS.gene049640:CDS |
| GGTGTCATGTGGCCTGTCAT+TGG | 0.420401 | 3.2:-59417442 | MS.gene049640:CDS |
| GCAGAAGGTTGATAGGGTTA+AGG | 0.423744 | 3.2:-59416150 | MS.gene049640:CDS |
| CTTATGCAAGACTTCAAAAC+AGG | 0.423970 | 3.2:-59416566 | MS.gene049640:CDS |
| GGCAGAAACAGGTTACGGTT+AGG | 0.425396 | 3.2:-59418802 | MS.gene049640:CDS |
| TAAACGAGGGCGTTAGGTGC+AGG | 0.426821 | 3.2:+59416404 | None:intergenic |
| CGGCATGGCTGCGGTTGCAC+CGG | 0.427222 | 3.2:-59418894 | MS.gene049640:CDS |
| TGGTCCCTTGCATCGACTTA+CGG | 0.438370 | 3.2:-59416701 | MS.gene049640:CDS |
| ATGAGGGGATTTGATCTTTG+AGG | 0.439237 | 3.2:+59416879 | None:intergenic |
| GCAGAAACAGGTTACGGTTA+GGG | 0.440923 | 3.2:-59418801 | MS.gene049640:CDS |
| ACCAAGACTCTTAACATCAT+TGG | 0.446254 | 3.2:+59418306 | None:intergenic |
| ATGTTTCTGCTGGGTTGTTA+GGG | 0.449011 | 3.2:-59418691 | MS.gene049640:CDS |
| CCATAGCAGTTCCAATAACT+TGG | 0.450305 | 3.2:+59416504 | None:intergenic |
| TTCGGTACTCTTGGTCAACC+TGG | 0.450819 | 3.2:-59416437 | MS.gene049640:CDS |
| GATCGGTGGAATTCTTTCAT+GGG | 0.451529 | 3.2:-59417464 | MS.gene049640:CDS |
| TTTGGATCAGCTGTTGCGTC+CGG | 0.451755 | 3.2:-59416119 | MS.gene049640:CDS |
| ACTTGTGTTGTTGCTGCTAG+TGG | 0.451917 | 3.2:-59418578 | MS.gene049640:CDS |
| CAACTATATTCCTGTTCCTA+TGG | 0.451960 | 3.2:-59416249 | MS.gene049640:CDS |
| TTAAGAGTCTTGGTTTAGGA+TGG | 0.456468 | 3.2:-59418297 | MS.gene049640:CDS |
| TATCGAAACATGGCTATACT+AGG | 0.461201 | 3.2:-59416383 | MS.gene049640:CDS |
| AGCAGCTTACATGGTCTTCA+AGG | 0.462139 | 3.2:-59417379 | MS.gene049640:CDS |
| CCAAGCACCAATAGCGAAGA+TGG | 0.462172 | 3.2:+59416670 | None:intergenic |
| ACCAGCTTTCTCAAGCAACT+TGG | 0.467323 | 3.2:+59418646 | None:intergenic |
| CCAAGTTATTGGAACTGCTA+TGG | 0.469421 | 3.2:-59416504 | MS.gene049640:CDS |
| CTTCGTTGAATGTTTCTGCT+GGG | 0.472472 | 3.2:-59418700 | MS.gene049640:CDS |
| CTCAAACAAAGCAGCTTACA+TGG | 0.473967 | 3.2:-59417388 | MS.gene049640:CDS |
| ACCAATATTTCGTTGTTGAT+CGG | 0.478557 | 3.2:-59417481 | MS.gene049640:CDS |
| GCCGTGGCTTTCGACGTCAT+AGG | 0.479696 | 3.2:+59418913 | None:intergenic |
| TACAACGCTTTCGGTACTCT+TGG | 0.482640 | 3.2:-59416446 | MS.gene049640:CDS |
| CTTTAGCTGGTGGAAAATGA+AGG | 0.487926 | 3.2:+59416802 | None:intergenic |
| AAACTTCCCCACATTTGGTC+TGG | 0.492239 | 3.2:-59417807 | MS.gene049640:CDS |
| TGATGTAATACCACTTTAGC+TGG | 0.492701 | 3.2:+59416789 | None:intergenic |
| CCAAATATTGCAAAACAAGC+TGG | 0.494078 | 3.2:-59418334 | MS.gene049640:CDS |
| CAAGTTATTGGAACTGCTAT+GGG | 0.494211 | 3.2:-59416503 | MS.gene049640:CDS |
| GAGAGGAGCATTTGGATCAT+CGG | 0.497596 | 3.2:+59416946 | None:intergenic |
| GCTTGGGCAGGTGCGTCTAA+CGG | 0.499684 | 3.2:-59416653 | MS.gene049640:CDS |
| TTCTTTCATGGGGTGTCATG+TGG | 0.500744 | 3.2:-59417453 | MS.gene049640:CDS |
| TCCATCTCCACATATCAAAC+CGG | 0.501705 | 3.2:+59416100 | None:intergenic |
| ATAGCCATAGCCATAGGAAC+AGG | 0.504745 | 3.2:+59416239 | None:intergenic |
| GATATTGTTTATTTGGCAGA+AGG | 0.507191 | 3.2:-59416165 | MS.gene049640:CDS |
| TTTGCTATTGATATGTGTGT+TGG | 0.507636 | 3.2:-59416194 | MS.gene049640:CDS |
| AATAACAGTATTCTCCTGTC+TGG | 0.507862 | 3.2:+59418604 | None:intergenic |
| CCGTGGCTTTCGACGTCATA+GGG | 0.509154 | 3.2:+59418914 | None:intergenic |
| TATTCCTGTTCCTATGGCTA+TGG | 0.510164 | 3.2:-59416243 | MS.gene049640:CDS |
| CGAAAGCCACGGCATGGCTG+CGG | 0.511258 | 3.2:-59418903 | MS.gene049640:CDS |
| TGTCGTCGAATGAAAGTGTA+GGG | 0.513370 | 3.2:+59416921 | None:intergenic |
| TGAGCTGTTGCGGTACCACT+TGG | 0.516027 | 3.2:+59417971 | None:intergenic |
| TCTAACGGCGGTGTCCTAGC+CGG | 0.520318 | 3.2:-59416638 | MS.gene049640:CDS |
| TATTTGGCAGAAGGTTGATA+GGG | 0.521362 | 3.2:-59416156 | MS.gene049640:CDS |
| GCGAACACCATTAATAATCA+TGG | 0.526943 | 3.2:+59416295 | None:intergenic |
| GAAAATGAAGGGGATGGTAA+TGG | 0.530222 | 3.2:+59416814 | None:intergenic |
| AATAACTTGGCTCACAAACA+TGG | 0.530485 | 3.2:+59416517 | None:intergenic |
| GTTGCGTCCGGTTTGATATG+TGG | 0.530851 | 3.2:-59416107 | MS.gene049640:CDS |
| TTCAGTGGTTCCACTCCGAA+AGG | 0.534003 | 3.2:-59418233 | MS.gene049640:intron |
| AATATTTCGTTGTTGATCGG+TGG | 0.535914 | 3.2:-59417478 | MS.gene049640:CDS |
| CATAGGAACAGGAATATAGT+TGG | 0.536080 | 3.2:+59416250 | None:intergenic |
| TGCCTATGGTTGTGGACTAA+CGG | 0.537350 | 3.2:-59416726 | MS.gene049640:CDS |
| AATGGTGTTCGCGACTATGT+CGG | 0.539051 | 3.2:-59416284 | MS.gene049640:CDS |
| CGCCCTCGTTTATCGAAACA+TGG | 0.542039 | 3.2:-59416393 | MS.gene049640:CDS |
| AATGAAAGTGTAGGGGAGAG+AGG | 0.542386 | 3.2:+59416929 | None:intergenic |
| ACCAAGTTGCTTGAGAAAGC+TGG | 0.544740 | 3.2:-59418647 | MS.gene049640:CDS |
| ACCATTAATAATCATGGCAC+CGG | 0.545307 | 3.2:+59416301 | None:intergenic |
| GTGCAACCGCAGCCATGCCG+TGG | 0.547128 | 3.2:+59418897 | None:intergenic |
| GCATTGCAAAAGGCTAGTGC+AGG | 0.548633 | 3.2:+59416746 | None:intergenic |
| ATAGGCTTCCAGACCAAATG+TGG | 0.549567 | 3.2:+59417799 | None:intergenic |
| TTGATCTTTGAGGAACATCT+CGG | 0.554704 | 3.2:+59416889 | None:intergenic |
| TTCAGTGCTAGTGATGATTG+TGG | 0.556606 | 3.2:-59417836 | MS.gene049640:CDS |
| ATGGTTGTGGACTAACGGAT+TGG | 0.556934 | 3.2:-59416721 | MS.gene049640:CDS |
| ATTTGTGAGTCTCATGTTGT+CGG | 0.557992 | 3.2:-59418774 | MS.gene049640:CDS |
| ACAACCATAGGCATTGCAAA+AGG | 0.564312 | 3.2:+59416736 | None:intergenic |
| AGGGCGTTAGGTGCAGGGTA+TGG | 0.565245 | 3.2:+59416410 | None:intergenic |
| AACAGTTTCCATACATCAGA+AGG | 0.565961 | 3.2:-59417941 | MS.gene049640:intron |
| ATCGGTGGAATTCTTTCATG+GGG | 0.567187 | 3.2:-59417463 | MS.gene049640:CDS |
| AAACGAGGGCGTTAGGTGCA+GGG | 0.569241 | 3.2:+59416405 | None:intergenic |
| TTGTCGTCGAATGAAAGTGT+AGG | 0.575329 | 3.2:+59416920 | None:intergenic |
| GCAAGAGCAAGAAAAGAGCT+AGG | 0.577753 | 3.2:+59416065 | None:intergenic |
| GGTGCAGGGTATGGTGAACC+AGG | 0.579015 | 3.2:+59416419 | None:intergenic |
| CTGCAATTGCGAACCATGAG+GGG | 0.583286 | 3.2:+59416864 | None:intergenic |
| AAGAATTTCAAGCAAATAGG+TGG | 0.584879 | 3.2:+59416032 | None:intergenic |
| ATCCGTTAGTCCACAACCAT+AGG | 0.586179 | 3.2:+59416724 | None:intergenic |
| TTTAGCTGGTGGAAAATGAA+GGG | 0.586752 | 3.2:+59416803 | None:intergenic |
| CAAAACAGGTTACATGACAA+TGG | 0.590728 | 3.2:-59416552 | MS.gene049640:CDS |
| GTCAAGAGCAGCAAATGCTA+AGG | 0.594984 | 3.2:-59416009 | MS.gene049640:CDS |
| AATGGTATAGCCATAGCCAT+AGG | 0.595250 | 3.2:+59416233 | None:intergenic |
| CCCTATGACGTCGAAAGCCA+CGG | 0.598986 | 3.2:-59418914 | MS.gene049640:CDS |
| ATAGCAATGATTCTTGGTGA+TGG | 0.599500 | 3.2:-59417055 | MS.gene049640:CDS |
| AAACATGGCTATACTAGGTG+TGG | 0.601524 | 3.2:-59416378 | MS.gene049640:CDS |
| CCTGCAATTGCGAACCATGA+GGG | 0.604092 | 3.2:+59416863 | None:intergenic |
| TCCGGTTTGATATGTGGAGA+TGG | 0.612716 | 3.2:-59416101 | MS.gene049640:CDS |
| TACGTGGCAGAAACAGGTTA+CGG | 0.614426 | 3.2:-59418807 | MS.gene049640:CDS |
| TCAAAGATCAAATCCCCTCA+TGG | 0.616210 | 3.2:-59416877 | MS.gene049640:CDS |
| TGACGTCGAAAGCCACGGCA+TGG | 0.618397 | 3.2:-59418909 | MS.gene049640:CDS |
| AGTTGCTTGAGAAAGCTGGT+TGG | 0.620575 | 3.2:-59418643 | MS.gene049640:CDS |
| CACATGCTGCTAAACCGGCT+AGG | 0.621749 | 3.2:+59416624 | None:intergenic |
| TGCTTTGTTTGAGATCAGCA+GGG | 0.627385 | 3.2:+59417398 | None:intergenic |
| TGTAATACCACTTTAGCTGG+TGG | 0.629875 | 3.2:+59416792 | None:intergenic |
| ATGGCTATACTAGGTGTGGA+CGG | 0.647638 | 3.2:-59416374 | MS.gene049640:CDS |
| TAGGCTTCCAGACCAAATGT+GGG | 0.650528 | 3.2:+59417800 | None:intergenic |
| TTAGCTGGTGGAAAATGAAG+GGG | 0.653662 | 3.2:+59416804 | None:intergenic |
| CTGGTGGAAAATGAAGGGGA+TGG | 0.654258 | 3.2:+59416808 | None:intergenic |
| TGGGCAGGTGCGTCTAACGG+CGG | 0.655359 | 3.2:-59416650 | MS.gene049640:CDS |
| GTTGATAAGATGAGCTGTTG+CGG | 0.660296 | 3.2:+59417961 | None:intergenic |
| AGTTGTTCATCATTCAACAC+CGG | 0.662303 | 3.2:+59418875 | None:intergenic |
| GCCTGCAATTGCGAACCATG+AGG | 0.668031 | 3.2:+59416862 | None:intergenic |
| TAGTACTGTACCTTTCGGAG+TGG | 0.669012 | 3.2:+59418223 | None:intergenic |
| TGAAGTTGAATCTCACAACT+GGG | 0.670966 | 3.2:-59418730 | MS.gene049640:CDS |
| TAGAATAGCCAGAAAACACA+TGG | 0.680447 | 3.2:+59416467 | None:intergenic |
| GTTGAATGATGAACAACTTG+AGG | 0.685365 | 3.2:-59418870 | MS.gene049640:CDS |
| TAGCCATGTTTCGATAAACG+AGG | 0.685399 | 3.2:+59416390 | None:intergenic |
| TTCAAACTGACATATCCAAG+TGG | 0.687798 | 3.2:-59417986 | MS.gene049640:CDS |
| ACAACTTGAGGAGATCTCTG+TGG | 0.691473 | 3.2:-59418858 | MS.gene049640:CDS |
| GCTAGTGGAATTGCATTCAG+CGG | 0.695424 | 3.2:-59418563 | MS.gene049640:intron |
| CTAGCCGGTTTAGCAGCATG+TGG | 0.697720 | 3.2:-59416623 | MS.gene049640:CDS |
| AGCCATGTTTCGATAAACGA+GGG | 0.699106 | 3.2:+59416391 | None:intergenic |
| CCAGCAGAAACATTCAACGA+AGG | 0.700492 | 3.2:+59418701 | None:intergenic |
| AGGCTTCCAGACCAAATGTG+GGG | 0.704515 | 3.2:+59417801 | None:intergenic |
| GTCGTCGAATGAAAGTGTAG+GGG | 0.705258 | 3.2:+59416922 | None:intergenic |
| GTAACCTGTTTCTGCCACGT+AGG | 0.720663 | 3.2:+59418809 | None:intergenic |
| AAGGAACATCTGTTCCTACG+TGG | 0.720715 | 3.2:-59418823 | MS.gene049640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATGAAAGAATTTAAAA+TGG | - | chr3.2:59417170-59417189 | MS.gene049640:intron | 10.0% |
| !! | AACATCAAATTAAAACTAAA+TGG | + | chr3.2:59416879-59416898 | None:intergenic | 15.0% |
| !! | TATTATTTAATGTACATAAC+AGG | - | chr3.2:59417351-59417370 | MS.gene049640:intron | 15.0% |
| !! | AAAGTATACTTACAAAAAAG+TGG | + | chr3.2:59417642-59417661 | None:intergenic | 20.0% |
| !! | TAAATGTTAGCTAAAAGAAA+AGG | + | chr3.2:59417333-59417352 | None:intergenic | 20.0% |
| !! | TAGGTTTGTATAAACAATTA+TGG | - | chr3.2:59417918-59417937 | MS.gene049640:intron | 20.0% |
| !!! | AACGAAATATTGGTTATATA+TGG | + | chr3.2:59417425-59417444 | None:intergenic | 20.0% |
| !!! | AACTTGTTCTAAAAACTATT+AGG | + | chr3.2:59416434-59416453 | None:intergenic | 20.0% |
| !!! | ACTTGTTCTAAAAACTATTA+GGG | + | chr3.2:59416433-59416452 | None:intergenic | 20.0% |
| !!! | ACTTTTTTGTAAGTATACTT+TGG | - | chr3.2:59417641-59417660 | MS.gene049640:intron | 20.0% |
| !!! | GGGTTAAATTGATTTTATTA+AGG | + | chr3.2:59416739-59416758 | None:intergenic | 20.0% |
| !!! | TGTTTTAAATTGATTGAACA+AGG | + | chr3.2:59416764-59416783 | None:intergenic | 20.0% |
| ! | AGATTTGTCAACAACAAATA+AGG | + | chr3.2:59416500-59416519 | None:intergenic | 25.0% |
| ! | CAACTTAAAACACAGTAAAT+TGG | - | chr3.2:59417701-59417720 | MS.gene049640:intron | 25.0% |
| ! | CAATAGAATACATTATCAAC+CGG | + | chr3.2:59417791-59417810 | None:intergenic | 25.0% |
| ! | GAAGCTTGATATTGTTTATT+TGG | - | chr3.2:59418740-59418759 | MS.gene049640:CDS | 25.0% |
| ! | TAAAACAATTGAACATGACT+TGG | - | chr3.2:59416777-59416796 | MS.gene049640:CDS | 25.0% |
| ! | TTAAATTGATTGAACAAGGA+CGG | + | chr3.2:59416760-59416779 | None:intergenic | 25.0% |
| !!! | TGAATCGATTTTTAAAACGT+GGG | - | chr3.2:59416821-59416840 | MS.gene049640:CDS | 25.0% |
| !!! | TTGAATCGATTTTTAAAACG+TGG | - | chr3.2:59416820-59416839 | MS.gene049640:CDS | 25.0% |
| AAAAACTGCATCATACTTTG+CGG | - | chr3.2:59418577-59418596 | MS.gene049640:CDS | 30.0% | |
| AACAATCATAATCTGCAACA+AGG | + | chr3.2:59416903-59416922 | None:intergenic | 30.0% | |
| AACCTCTATGTTCTCAATTA+TGG | - | chr3.2:59417229-59417248 | MS.gene049640:intron | 30.0% | |
| AAGAATTTCAAGCAAATAGG+TGG | + | chr3.2:59418883-59418902 | None:intergenic | 30.0% | |
| AAGTAGCTTCCAATGTAAAA+TGG | + | chr3.2:59418700-59418719 | None:intergenic | 30.0% | |
| ACAAGTACAAAACTGGAATT+TGG | - | chr3.2:59417730-59417749 | MS.gene049640:intron | 30.0% | |
| ACCAATATTTCGTTGTTGAT+CGG | - | chr3.2:59417431-59417450 | MS.gene049640:CDS | 30.0% | |
| AGTCAAGTATTAAACTGAAG+TGG | + | chr3.2:59416387-59416406 | None:intergenic | 30.0% | |
| GACAAGAATTTCAAGCAAAT+AGG | + | chr3.2:59418886-59418905 | None:intergenic | 30.0% | |
| GATATTGTTTATTTGGCAGA+AGG | - | chr3.2:59418747-59418766 | MS.gene049640:CDS | 30.0% | |
| GATTGAAACAAGTACAAAAC+TGG | - | chr3.2:59417723-59417742 | MS.gene049640:intron | 30.0% | |
| TAAATTGATTGAACAAGGAC+GGG | + | chr3.2:59416759-59416778 | None:intergenic | 30.0% | |
| TTGTATTCTCTCTAAACTAC+AGG | - | chr3.2:59417823-59417842 | MS.gene049640:CDS | 30.0% | |
| ! | ATGGCTATACCATTTTACAT+TGG | - | chr3.2:59418688-59418707 | MS.gene049640:CDS | 30.0% |
| ! | CAAAGTATGATGCAGTTTTT+CGG | + | chr3.2:59418577-59418596 | None:intergenic | 30.0% |
| ! | TCTAAACTACAGGTTTTCAT+AGG | - | chr3.2:59417833-59417852 | MS.gene049640:CDS | 30.0% |
| ! | TTTGATAGTACTGTACCTTT+CGG | + | chr3.2:59416697-59416716 | None:intergenic | 30.0% |
| !! | CGGTTGATAATGTATTCTAT+TGG | - | chr3.2:59417789-59417808 | MS.gene049640:intron | 30.0% |
| !! | CTATTTGTTGTTAGCTTTCT+TGG | - | chr3.2:59416650-59416669 | MS.gene049640:CDS | 30.0% |
| !! | TTTGCTATTGATATGTGTGT+TGG | - | chr3.2:59418718-59418737 | MS.gene049640:CDS | 30.0% |
| !!! | TAGATCTTTTTCAATGTGAC+CGG | - | chr3.2:59417769-59417788 | MS.gene049640:intron | 30.0% |
| AAATTAGCCATCTTCGCTAT+TGG | - | chr3.2:59418235-59418254 | MS.gene049640:CDS | 35.0% | |
| AACAGTTTCCATACATCAGA+AGG | - | chr3.2:59416971-59416990 | MS.gene049640:CDS | 35.0% | |
| AATAACAGTATTCTCCTGTC+TGG | + | chr3.2:59416311-59416330 | None:intergenic | 35.0% | |
| AATAACTTGGCTCACAAACA+TGG | + | chr3.2:59418398-59418417 | None:intergenic | 35.0% | |
| AATATTTCGTTGTTGATCGG+TGG | - | chr3.2:59417434-59417453 | MS.gene049640:CDS | 35.0% | |
| ACCAAGACTCTTAACATCAT+TGG | + | chr3.2:59416609-59416628 | None:intergenic | 35.0% | |
| ACCATTAATAATCATGGCAC+CGG | + | chr3.2:59418614-59418633 | None:intergenic | 35.0% | |
| ACCGATCAACAACGAAATAT+TGG | + | chr3.2:59417435-59417454 | None:intergenic | 35.0% | |
| AGTTGTTCATCATTCAACAC+CGG | + | chr3.2:59416040-59416059 | None:intergenic | 35.0% | |
| ATAGCAATGATTCTTGGTGA+TGG | - | chr3.2:59417857-59417876 | MS.gene049640:CDS | 35.0% | |
| ATAGGCATAGCAATGATTCT+TGG | - | chr3.2:59417851-59417870 | MS.gene049640:CDS | 35.0% | |
| ATGAAGTTGAATCTCACAAC+TGG | - | chr3.2:59416181-59416200 | MS.gene049640:CDS | 35.0% | |
| ATGTTTGTGAGCCAAGTTAT+TGG | - | chr3.2:59418397-59418416 | MS.gene049640:intron | 35.0% | |
| ATTTGTGAGTCTCATGTTGT+CGG | - | chr3.2:59416138-59416157 | MS.gene049640:CDS | 35.0% | |
| CAAAACAGGTTACATGACAA+TGG | - | chr3.2:59418360-59418379 | MS.gene049640:CDS | 35.0% | |
| CAACTATATTCCTGTTCCTA+TGG | - | chr3.2:59418663-59418682 | MS.gene049640:CDS | 35.0% | |
| CAAGTTATTGGAACTGCTAT+GGG | - | chr3.2:59418409-59418428 | MS.gene049640:intron | 35.0% | |
| CACCATAATTGAGAACATAG+AGG | + | chr3.2:59417234-59417253 | None:intergenic | 35.0% | |
| CATAGGAACAGGAATATAGT+TGG | + | chr3.2:59418665-59418684 | None:intergenic | 35.0% | |
| CCAAATATTGCAAAACAAGC+TGG | - | chr3.2:59416578-59416597 | MS.gene049640:CDS | 35.0% | |
| CTTATGCAAGACTTCAAAAC+AGG | - | chr3.2:59418346-59418365 | MS.gene049640:CDS | 35.0% | |
| GAACATAGAGGTTTCAGTTT+CGG | + | chr3.2:59417222-59417241 | None:intergenic | 35.0% | |
| GATGTTAAGAGTCTTGGTTT+AGG | - | chr3.2:59416611-59416630 | MS.gene049640:CDS | 35.0% | |
| GCGAACACCATTAATAATCA+TGG | + | chr3.2:59418620-59418639 | None:intergenic | 35.0% | |
| GTGATGGTCTATACAACTTT+GGG | - | chr3.2:59417873-59417892 | MS.gene049640:CDS | 35.0% | |
| GTTGAATGATGAACAACTTG+AGG | - | chr3.2:59416042-59416061 | MS.gene049640:CDS | 35.0% | |
| TACTTGCTTCTTTGCTAGTT+TGG | + | chr3.2:59416999-59417018 | None:intergenic | 35.0% | |
| TAGAATAGCCAGAAAACACA+TGG | + | chr3.2:59418448-59418467 | None:intergenic | 35.0% | |
| TATCGAAACATGGCTATACT+AGG | - | chr3.2:59418529-59418548 | MS.gene049640:intron | 35.0% | |
| TGAAGTTGAATCTCACAACT+GGG | - | chr3.2:59416182-59416201 | MS.gene049640:CDS | 35.0% | |
| TGATATGTGGAGATGGAATT+TGG | - | chr3.2:59418818-59418837 | MS.gene049640:CDS | 35.0% | |
| TGATGTAATACCACTTTAGC+TGG | + | chr3.2:59418126-59418145 | None:intergenic | 35.0% | |
| TTAAGAGTCTTGGTTTAGGA+TGG | - | chr3.2:59416615-59416634 | MS.gene049640:CDS | 35.0% | |
| TTCAAACTGACATATCCAAG+TGG | - | chr3.2:59416926-59416945 | MS.gene049640:CDS | 35.0% | |
| TTTAGCTGGTGGAAAATGAA+GGG | + | chr3.2:59418112-59418131 | None:intergenic | 35.0% | |
| ! | ATTTTTCTGCAACCTATGTG+GGG | - | chr3.2:59417384-59417403 | MS.gene049640:CDS | 35.0% |
| ! | GATTTTTCTGCAACCTATGT+GGG | - | chr3.2:59417383-59417402 | MS.gene049640:CDS | 35.0% |
| ! | GGTTTTTCTTTGTGAAGACA+TGG | - | chr3.2:59416242-59416261 | MS.gene049640:CDS | 35.0% |
| ! | TAATCAACCTTTTACCAGAC+AGG | - | chr3.2:59416294-59416313 | MS.gene049640:CDS | 35.0% |
| ! | TACAACTTTGGGAAAGTTCT+TGG | - | chr3.2:59417884-59417903 | MS.gene049640:CDS | 35.0% |
| ! | TGATTTTTCTGCAACCTATG+TGG | - | chr3.2:59417382-59417401 | MS.gene049640:CDS | 35.0% |
| ! | TTATATCGCCATGTGTTTTC+TGG | - | chr3.2:59418437-59418456 | MS.gene049640:intron | 35.0% |
| ! | TTATTTGGCAGAAGGTTGAT+AGG | - | chr3.2:59418755-59418774 | MS.gene049640:CDS | 35.0% |
| ! | TTGATCTTTGAGGAACATCT+CGG | + | chr3.2:59418026-59418045 | None:intergenic | 35.0% |
| !! | AAGAAGCAAGTAAAAGCACT+TGG | - | chr3.2:59417007-59417026 | MS.gene049640:CDS | 35.0% |
| !! | GCTAAGGTTGATAAGTTCTT+AGG | - | chr3.2:59418919-59418938 | MS.gene049640:CDS | 35.0% |
| !! | TATTTGGCAGAAGGTTGATA+GGG | - | chr3.2:59418756-59418775 | MS.gene049640:CDS | 35.0% |
| !! | TTGGTGCTAAAAAAGGAGAT+TGG | - | chr3.2:59417489-59417508 | MS.gene049640:CDS | 35.0% |
| !!! | AGTCACGTACTTGTTTTGAT+AGG | + | chr3.2:59417134-59417153 | None:intergenic | 35.0% |
| !!! | CCAGCTTGTTTTGCAATATT+TGG | + | chr3.2:59416581-59416600 | None:intergenic | 35.0% |
| !!! | CGATTTTTAAAACGTGGGAT+GGG | - | chr3.2:59416826-59416845 | MS.gene049640:CDS | 35.0% |
| !!! | CTTCTCCTTTAGCTTTTTGT+GGG | - | chr3.2:59417036-59417055 | MS.gene049640:CDS | 35.0% |
| !!! | TCGATTTTTAAAACGTGGGA+TGG | - | chr3.2:59416825-59416844 | MS.gene049640:CDS | 35.0% |
| !!! | TCTTCTCCTTTAGCTTTTTG+TGG | - | chr3.2:59417035-59417054 | MS.gene049640:CDS | 35.0% |
| !!! | TTCTCCTTTAGCTTTTTGTG+GGG | - | chr3.2:59417037-59417056 | MS.gene049640:CDS | 35.0% |
| AAACATGGCTATACTAGGTG+TGG | - | chr3.2:59418534-59418553 | MS.gene049640:intron | 40.0% | |
| AATGGTATAGCCATAGCCAT+AGG | + | chr3.2:59418682-59418701 | None:intergenic | 40.0% | |
| AGCCATGTTTCGATAAACGA+GGG | + | chr3.2:59418524-59418543 | None:intergenic | 40.0% | |
| AGGAGATCTCTGTGGAAAAA+GGG | - | chr3.2:59416062-59416081 | MS.gene049640:CDS | 40.0% | |
| ATAGAGGTTTCAGTTTCGGT+CGG | + | chr3.2:59417218-59417237 | None:intergenic | 40.0% | |
| ATCGGTGGAATTCTTTCATG+GGG | - | chr3.2:59417449-59417468 | MS.gene049640:CDS | 40.0% | |
| ATGAGGGGATTTGATCTTTG+AGG | + | chr3.2:59418036-59418055 | None:intergenic | 40.0% | |
| ATTTGCTTGCTTGTGTAGGT+GGG | - | chr3.2:59416528-59416547 | MS.gene049640:CDS | 40.0% | |
| CCAAGTTATTGGAACTGCTA+TGG | - | chr3.2:59418408-59418427 | MS.gene049640:intron | 40.0% | |
| CCATAGCAGTTCCAATAACT+TGG | + | chr3.2:59418411-59418430 | None:intergenic | 40.0% | |
| CTCAAACAAAGCAGCTTACA+TGG | - | chr3.2:59417524-59417543 | MS.gene049640:CDS | 40.0% | |
| CTTTAGCTGGTGGAAAATGA+AGG | + | chr3.2:59418113-59418132 | None:intergenic | 40.0% | |
| GAAAATGAAGGGGATGGTAA+TGG | + | chr3.2:59418101-59418120 | None:intergenic | 40.0% | |
| GAAACCCCACAAAAAGCTAA+AGG | + | chr3.2:59417044-59417063 | None:intergenic | 40.0% | |
| GATCGGTGGAATTCTTTCAT+GGG | - | chr3.2:59417448-59417467 | MS.gene049640:CDS | 40.0% | |
| GCCAATGATGTTAAGAGTCT+TGG | - | chr3.2:59416605-59416624 | MS.gene049640:CDS | 40.0% | |
| GTATTCTCCTGTCTGGTAAA+AGG | + | chr3.2:59416304-59416323 | None:intergenic | 40.0% | |
| GTTCTTGGCACAACTCTTAT+AGG | - | chr3.2:59417899-59417918 | MS.gene049640:intron | 40.0% | |
| TAGCCATGTTTCGATAAACG+AGG | + | chr3.2:59418525-59418544 | None:intergenic | 40.0% | |
| TATTCCTGTTCCTATGGCTA+TGG | - | chr3.2:59418669-59418688 | MS.gene049640:CDS | 40.0% | |
| TCAAAGATCAAATCCCCTCA+TGG | - | chr3.2:59418035-59418054 | MS.gene049640:intron | 40.0% | |
| TCCATCTCCACATATCAAAC+CGG | + | chr3.2:59418815-59418834 | None:intergenic | 40.0% | |
| TCTGTGGAAAAAGGGTTTGA+AGG | - | chr3.2:59416070-59416089 | MS.gene049640:CDS | 40.0% | |
| TGATCGGTGGAATTCTTTCA+TGG | - | chr3.2:59417447-59417466 | MS.gene049640:CDS | 40.0% | |
| TGGCTATTCTACAACGCTTT+CGG | - | chr3.2:59418457-59418476 | MS.gene049640:intron | 40.0% | |
| TGGCTCACAAACATGGATTT+CGG | + | chr3.2:59418391-59418410 | None:intergenic | 40.0% | |
| TGTAATACCACTTTAGCTGG+TGG | + | chr3.2:59418123-59418142 | None:intergenic | 40.0% | |
| TTAGCTGGTGGAAAATGAAG+GGG | + | chr3.2:59418111-59418130 | None:intergenic | 40.0% | |
| TTCAGTGCTAGTGATGATTG+TGG | - | chr3.2:59417076-59417095 | MS.gene049640:intron | 40.0% | |
| TTTGCAAACTTCCCCACATT+TGG | - | chr3.2:59417100-59417119 | MS.gene049640:intron | 40.0% | |
| ! | AATGTTTCTGCTGGGTTGTT+AGG | - | chr3.2:59416220-59416239 | MS.gene049640:CDS | 40.0% |
| ! | ACAACCATAGGCATTGCAAA+AGG | + | chr3.2:59418179-59418198 | None:intergenic | 40.0% |
| ! | ATGTTTCTGCTGGGTTGTTA+GGG | - | chr3.2:59416221-59416240 | MS.gene049640:CDS | 40.0% |
| ! | ATTTTCCGTAAGTCGATGCA+AGG | + | chr3.2:59418219-59418238 | None:intergenic | 40.0% |
| ! | CACTAGCACTGAAAAACCAT+TGG | + | chr3.2:59417069-59417088 | None:intergenic | 40.0% |
| ! | CTTCGTTGAATGTTTCTGCT+GGG | - | chr3.2:59416212-59416231 | MS.gene049640:CDS | 40.0% |
| ! | CTTTCTTGGTCTCTTTTCAG+TGG | - | chr3.2:59416664-59416683 | MS.gene049640:CDS | 40.0% |
| ! | GGTGATGGTCTATACAACTT+TGG | - | chr3.2:59417872-59417891 | MS.gene049640:CDS | 40.0% |
| ! | GTTGATAAGATGAGCTGTTG+CGG | + | chr3.2:59416954-59416973 | None:intergenic | 40.0% |
| ! | TCATTTTCCACCAGCTAAAG+TGG | - | chr3.2:59418113-59418132 | MS.gene049640:intron | 40.0% |
| ! | TGTCGTCGAATGAAAGTGTA+GGG | + | chr3.2:59417994-59418013 | None:intergenic | 40.0% |
| ! | TTGTCGTCGAATGAAAGTGT+AGG | + | chr3.2:59417995-59418014 | None:intergenic | 40.0% |
| ! | TTTTCCGTAAGTCGATGCAA+GGG | + | chr3.2:59418218-59418237 | None:intergenic | 40.0% |
| ! | TTTTGCAATGCCTATGGTTG+TGG | - | chr3.2:59418178-59418197 | MS.gene049640:intron | 40.0% |
| ! | TTTTGTGGGGTTTCTTCCAA+TGG | - | chr3.2:59417050-59417069 | MS.gene049640:CDS | 40.0% |
| ! | TTTTTCTGCAACCTATGTGG+GGG | - | chr3.2:59417385-59417404 | MS.gene049640:CDS | 40.0% |
| !! | CCTGTCATTGGTGCTAAAAA+AGG | - | chr3.2:59417482-59417501 | MS.gene049640:CDS | 40.0% |
| !! | CTTGATTTGCTTGCTTGTGT+AGG | - | chr3.2:59416524-59416543 | MS.gene049640:CDS | 40.0% |
| !! | TGCTTTGTTTGAGATCAGCA+GGG | + | chr3.2:59417517-59417536 | None:intergenic | 40.0% |
| !!! | CCTTTTTTAGCACCAATGAC+AGG | + | chr3.2:59417485-59417504 | None:intergenic | 40.0% |
| AAACTTCCCCACATTTGGTC+TGG | - | chr3.2:59417105-59417124 | MS.gene049640:intron | 45.0% | |
| AAGGAACATCTGTTCCTACG+TGG | - | chr3.2:59416089-59416108 | MS.gene049640:CDS | 45.0% | |
| AATGGTGTTCGCGACTATGT+CGG | - | chr3.2:59418628-59418647 | MS.gene049640:CDS | 45.0% | |
| ACAACTTGAGGAGATCTCTG+TGG | - | chr3.2:59416054-59416073 | MS.gene049640:CDS | 45.0% | |
| ACCAAGTTGCTTGAGAAAGC+TGG | - | chr3.2:59416265-59416284 | MS.gene049640:CDS | 45.0% | |
| ACCAGCTTTCTCAAGCAACT+TGG | + | chr3.2:59416269-59416288 | None:intergenic | 45.0% | |
| AGCAGCTTACATGGTCTTCA+AGG | - | chr3.2:59417533-59417552 | MS.gene049640:CDS | 45.0% | |
| AGGGTTAAGGCTGATGCATT+TGG | - | chr3.2:59418775-59418794 | MS.gene049640:CDS | 45.0% | |
| AGTTGCTTGAGAAAGCTGGT+TGG | - | chr3.2:59416269-59416288 | MS.gene049640:CDS | 45.0% | |
| ATAGCCATAGCCATAGGAAC+AGG | + | chr3.2:59418676-59418695 | None:intergenic | 45.0% | |
| ATAGGCTTCCAGACCAAATG+TGG | + | chr3.2:59417116-59417135 | None:intergenic | 45.0% | |
| ATCCGTTAGTCCACAACCAT+AGG | + | chr3.2:59418191-59418210 | None:intergenic | 45.0% | |
| ATGGCTATACTAGGTGTGGA+CGG | - | chr3.2:59418538-59418557 | MS.gene049640:intron | 45.0% | |
| CCAGCAGAAACATTCAACGA+AGG | + | chr3.2:59416214-59416233 | None:intergenic | 45.0% | |
| GAGGAGATCTCTGTGGAAAA+AGG | - | chr3.2:59416061-59416080 | MS.gene049640:CDS | 45.0% | |
| GCAAGAGCAAGAAAAGAGCT+AGG | + | chr3.2:59418850-59418869 | None:intergenic | 45.0% | |
| GCAGAAACAGGTTACGGTTA+GGG | - | chr3.2:59416111-59416130 | MS.gene049640:CDS | 45.0% | |
| GCTAGTGGAATTGCATTCAG+CGG | - | chr3.2:59416349-59416368 | MS.gene049640:CDS | 45.0% | |
| GTCAAGAGCAGCAAATGCTA+AGG | - | chr3.2:59418903-59418922 | MS.gene049640:CDS | 45.0% | |
| GTTTGGCACCTTCTGATGTA+TGG | + | chr3.2:59416982-59417001 | None:intergenic | 45.0% | |
| TACAACGCTTTCGGTACTCT+TGG | - | chr3.2:59418466-59418485 | MS.gene049640:intron | 45.0% | |
| TACGTGGCAGAAACAGGTTA+CGG | - | chr3.2:59416105-59416124 | MS.gene049640:CDS | 45.0% | |
| TAGGCTTCCAGACCAAATGT+GGG | + | chr3.2:59417115-59417134 | None:intergenic | 45.0% | |
| TAGTACTGTACCTTTCGGAG+TGG | + | chr3.2:59416692-59416711 | None:intergenic | 45.0% | |
| ! | AATGAAAGTGTAGGGGAGAG+AGG | + | chr3.2:59417986-59418005 | None:intergenic | 45.0% |
| ! | ACTTGTGTTGTTGCTGCTAG+TGG | - | chr3.2:59416334-59416353 | MS.gene049640:CDS | 45.0% |
| ! | AGCTCTTTTCTTGCTCTTGC+TGG | - | chr3.2:59418850-59418869 | MS.gene049640:CDS | 45.0% |
| ! | ATGGTTGTGGACTAACGGAT+TGG | - | chr3.2:59418191-59418210 | MS.gene049640:intron | 45.0% |
| ! | CATCTTCGCTATTGGTGCTT+GGG | - | chr3.2:59418243-59418262 | MS.gene049640:CDS | 45.0% |
| ! | CCTTCGTTGAATGTTTCTGC+TGG | - | chr3.2:59416211-59416230 | MS.gene049640:CDS | 45.0% |
| ! | GATTTGCTTGCTTGTGTAGG+TGG | - | chr3.2:59416527-59416546 | MS.gene049640:CDS | 45.0% |
| ! | GGGTTTGGTAGCTACTTGTT+TGG | - | chr3.2:59416548-59416567 | MS.gene049640:CDS | 45.0% |
| ! | GTCGTCGAATGAAAGTGTAG+GGG | + | chr3.2:59417993-59418012 | None:intergenic | 45.0% |
| ! | TCCGGTTTGATATGTGGAGA+TGG | - | chr3.2:59418811-59418830 | MS.gene049640:CDS | 45.0% |
| ! | TGCCTATGGTTGTGGACTAA+CGG | - | chr3.2:59418186-59418205 | MS.gene049640:intron | 45.0% |
| ! | TTCTTTCATGGGGTGTCATG+TGG | - | chr3.2:59417459-59417478 | MS.gene049640:CDS | 45.0% |
| !! | CTAGCCTTTTGCAATGCCTA+TGG | - | chr3.2:59418172-59418191 | MS.gene049640:intron | 45.0% |
| !! | CTGCTTTGTTTGAGATCAGC+AGG | + | chr3.2:59417518-59417537 | None:intergenic | 45.0% |
| !! | GAGAGGAGCATTTGGATCAT+CGG | + | chr3.2:59417969-59417988 | None:intergenic | 45.0% |
| !! | GCAGAAGGTTGATAGGGTTA+AGG | - | chr3.2:59418762-59418781 | MS.gene049640:CDS | 45.0% |
| !! | GCCGGTGCCATGATTATTAA+TGG | - | chr3.2:59418610-59418629 | MS.gene049640:CDS | 45.0% |
| !! | TTTCGATAAACGAGGGCGTT+AGG | + | chr3.2:59418517-59418536 | None:intergenic | 45.0% |
| !! | TTCATTAATTAATAAAATAA+AGG | + | chr3.2:59417159-59417178 | None:intergenic | 5.0% |
| !!! | TTTTTATTTATTTAAATTGT+AGG | - | chr3.2:59417588-59417607 | MS.gene049640:intron | 5.0% |
| AGGCTTCCAGACCAAATGTG+GGG | + | chr3.2:59417114-59417133 | None:intergenic | 50.0% | |
| CCAAGCACCAATAGCGAAGA+TGG | + | chr3.2:59418245-59418264 | None:intergenic | 50.0% | |
| CCTGCAATTGCGAACCATGA+GGG | + | chr3.2:59418052-59418071 | None:intergenic | 50.0% | |
| CGCCCTCGTTTATCGAAACA+TGG | - | chr3.2:59418519-59418538 | MS.gene049640:intron | 50.0% | |
| CTGCAATTGCGAACCATGAG+GGG | + | chr3.2:59418051-59418070 | None:intergenic | 50.0% | |
| CTGGTGGAAAATGAAGGGGA+TGG | + | chr3.2:59418107-59418126 | None:intergenic | 50.0% | |
| GACACCACATGCTGCTAAAC+CGG | + | chr3.2:59418296-59418315 | None:intergenic | 50.0% | |
| GCATTGCAAAAGGCTAGTGC+AGG | + | chr3.2:59418169-59418188 | None:intergenic | 50.0% | |
| GGCAGAAACAGGTTACGGTT+AGG | - | chr3.2:59416110-59416129 | MS.gene049640:CDS | 50.0% | |
| TATCATCCCAACCCCCACAT+AGG | + | chr3.2:59417399-59417418 | None:intergenic | 50.0% | |
| TGTTCCTACGTGGCAGAAAC+AGG | - | chr3.2:59416099-59416118 | MS.gene049640:CDS | 50.0% | |
| TTCAGTGGTTCCACTCCGAA+AGG | - | chr3.2:59416679-59416698 | MS.gene049640:CDS | 50.0% | |
| TTCGGTACTCTTGGTCAACC+TGG | - | chr3.2:59418475-59418494 | MS.gene049640:intron | 50.0% | |
| TTTGGATCAGCTGTTGCGTC+CGG | - | chr3.2:59418793-59418812 | MS.gene049640:CDS | 50.0% | |
| ! | CCATCTTCGCTATTGGTGCT+TGG | - | chr3.2:59418242-59418261 | MS.gene049640:CDS | 50.0% |
| ! | CTTGCTTGTGTAGGTGGGTT+TGG | - | chr3.2:59416533-59416552 | MS.gene049640:CDS | 50.0% |
| ! | GTTGCGTCCGGTTTGATATG+TGG | - | chr3.2:59418805-59418824 | MS.gene049640:CDS | 50.0% |
| !! | GTAACCTGTTTCTGCCACGT+AGG | + | chr3.2:59416106-59416125 | None:intergenic | 50.0% |
| !! | TGGTCCCTTGCATCGACTTA+CGG | - | chr3.2:59418211-59418230 | MS.gene049640:intron | 50.0% |
| CACATGCTGCTAAACCGGCT+AGG | + | chr3.2:59418291-59418310 | None:intergenic | 55.0% | |
| CCCTATGACGTCGAAAGCCA+CGG | - | chr3.2:59415998-59416017 | MS.gene049640:CDS | 55.0% | |
| CCCTCATGGTTCGCAATTGC+AGG | - | chr3.2:59418049-59418068 | MS.gene049640:intron | 55.0% | |
| CCGTGGCTTTCGACGTCATA+GGG | + | chr3.2:59416001-59416020 | None:intergenic | 55.0% | |
| CTGCAACCTATGTGGGGGTT+GGG | - | chr3.2:59417390-59417409 | MS.gene049640:CDS | 55.0% | |
| GCCTGCAATTGCGAACCATG+AGG | + | chr3.2:59418053-59418072 | None:intergenic | 55.0% | |
| TCTGCAACCTATGTGGGGGT+TGG | - | chr3.2:59417389-59417408 | MS.gene049640:CDS | 55.0% | |
| TGAGCTGTTGCGGTACCACT+TGG | + | chr3.2:59416944-59416963 | None:intergenic | 55.0% | |
| ! | CTAGCCGGTTTAGCAGCATG+TGG | - | chr3.2:59418289-59418308 | MS.gene049640:CDS | 55.0% |
| ! | CTTTGCGGCGTGTTTTTCGC+CGG | - | chr3.2:59418592-59418611 | MS.gene049640:CDS | 55.0% |
| ! | GGTGTCATGTGGCCTGTCAT+TGG | - | chr3.2:59417470-59417489 | MS.gene049640:CDS | 55.0% |
| ! | TTCGCTATTGGTGCTTGGGC+AGG | - | chr3.2:59418247-59418266 | MS.gene049640:CDS | 55.0% |
| !! | AAACGAGGGCGTTAGGTGCA+GGG | + | chr3.2:59418510-59418529 | None:intergenic | 55.0% |
| !! | GTAGGGGAGAGAGGAGCATT+TGG | + | chr3.2:59417977-59417996 | None:intergenic | 55.0% |
| !! | TAAACGAGGGCGTTAGGTGC+AGG | + | chr3.2:59418511-59418530 | None:intergenic | 55.0% |
| GCCGTGGCTTTCGACGTCAT+AGG | + | chr3.2:59416002-59416021 | None:intergenic | 60.0% | |
| GCTTGGGCAGGTGCGTCTAA+CGG | - | chr3.2:59418259-59418278 | MS.gene049640:CDS | 60.0% | |
| GGTGCAGGGTATGGTGAACC+AGG | + | chr3.2:59418496-59418515 | None:intergenic | 60.0% | |
| TCTAACGGCGGTGTCCTAGC+CGG | - | chr3.2:59418274-59418293 | MS.gene049640:CDS | 60.0% | |
| TGACGTCGAAAGCCACGGCA+TGG | - | chr3.2:59416003-59416022 | MS.gene049640:CDS | 60.0% | |
| ! | AGGGCGTTAGGTGCAGGGTA+TGG | + | chr3.2:59418505-59418524 | None:intergenic | 60.0% |
| CGAAAGCCACGGCATGGCTG+CGG | - | chr3.2:59416009-59416028 | MS.gene049640:CDS | 65.0% | |
| TGGGCAGGTGCGTCTAACGG+CGG | - | chr3.2:59418262-59418281 | MS.gene049640:CDS | 65.0% | |
| CGGCATGGCTGCGGTTGCAC+CGG | - | chr3.2:59416018-59416037 | MS.gene049640:CDS | 70.0% | |
| GTGCAACCGCAGCCATGCCG+TGG | + | chr3.2:59416018-59416037 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 59415986 | 59418948 | 59415986 | ID=MS.gene049640 |
| chr3.2 | mRNA | 59415986 | 59418948 | 59415986 | ID=MS.gene049640.t1;Parent=MS.gene049640 |
| chr3.2 | exon | 59418564 | 59418948 | 59418564 | ID=MS.gene049640.t1.exon1;Parent=MS.gene049640.t1 |
| chr3.2 | CDS | 59418564 | 59418948 | 59418564 | ID=cds.MS.gene049640.t1;Parent=MS.gene049640.t1 |
| chr3.2 | exon | 59418234 | 59418388 | 59418234 | ID=MS.gene049640.t1.exon2;Parent=MS.gene049640.t1 |
| chr3.2 | CDS | 59418234 | 59418388 | 59418234 | ID=cds.MS.gene049640.t1;Parent=MS.gene049640.t1 |
| chr3.2 | exon | 59417942 | 59418023 | 59417942 | ID=MS.gene049640.t1.exon3;Parent=MS.gene049640.t1 |
| chr3.2 | CDS | 59417942 | 59418023 | 59417942 | ID=cds.MS.gene049640.t1;Parent=MS.gene049640.t1 |
| chr3.2 | exon | 59417791 | 59417911 | 59417791 | ID=MS.gene049640.t1.exon4;Parent=MS.gene049640.t1 |
| chr3.2 | CDS | 59417791 | 59417911 | 59417791 | ID=cds.MS.gene049640.t1;Parent=MS.gene049640.t1 |
| chr3.2 | exon | 59417372 | 59417561 | 59417372 | ID=MS.gene049640.t1.exon5;Parent=MS.gene049640.t1 |
| chr3.2 | CDS | 59417372 | 59417561 | 59417372 | ID=cds.MS.gene049640.t1;Parent=MS.gene049640.t1 |
| chr3.2 | exon | 59415986 | 59417089 | 59415986 | ID=MS.gene049640.t1.exon6;Parent=MS.gene049640.t1 |
| chr3.2 | CDS | 59415986 | 59417089 | 59415986 | ID=cds.MS.gene049640.t1;Parent=MS.gene049640.t1 |
| Gene Sequence |
| Protein sequence |
