Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049642.t1 | RHN68031.1 | 89.6 | 691 | 58 | 3 | 1 | 678 | 1 | 690 | 0.00E+00 | 1224.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049642.t1 | Q9SHY2 | 75.9 | 667 | 142 | 6 | 26 | 676 | 22 | 685 | 7.9e-296 | 1017.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049642.t1 | A0A396ITK6 | 89.6 | 691 | 58 | 3 | 1 | 678 | 1 | 690 | 0.0e+00 | 1224.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049642 | MS.gene45566 | PPI |
| MS.gene049642 | MS.gene57831 | PPI |
| MS.gene049642 | MS.gene05216 | PPI |
| MS.gene049642 | MS.gene37726 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049642.t1 | MTR_5g091600 | 87.590 | 693 | 60 | 5 | 1 | 678 | 1 | 682 | 0.0 | 1191 |
| MS.gene049642.t1 | MTR_3g063520 | 89.436 | 691 | 59 | 3 | 1 | 678 | 1 | 690 | 0.0 | 1174 |
| MS.gene049642.t1 | MTR_3g063490 | 83.741 | 695 | 93 | 4 | 1 | 676 | 1 | 694 | 0.0 | 1153 |
| MS.gene049642.t1 | MTR_6g077870 | 71.837 | 664 | 175 | 3 | 26 | 678 | 50 | 712 | 0.0 | 991 |
| MS.gene049642.t1 | MTR_6g077870 | 70.471 | 552 | 151 | 3 | 138 | 678 | 1 | 551 | 0.0 | 811 |
| MS.gene049642.t1 | MTR_7g028250 | 57.337 | 661 | 246 | 9 | 34 | 669 | 30 | 679 | 0.0 | 763 |
| MS.gene049642.t1 | MTR_3g092090 | 54.394 | 660 | 277 | 6 | 20 | 663 | 12 | 663 | 0.0 | 734 |
| MS.gene049642.t1 | MTR_3g092090 | 53.373 | 667 | 275 | 7 | 2 | 652 | 6 | 652 | 0.0 | 719 |
| MS.gene049642.t1 | MTR_1g007580 | 51.111 | 675 | 297 | 9 | 19 | 666 | 4 | 672 | 0.0 | 699 |
| MS.gene049642.t1 | MTR_0312s0020 | 50.830 | 663 | 303 | 7 | 20 | 666 | 17 | 672 | 0.0 | 696 |
| MS.gene049642.t1 | MTR_1g007540 | 50.830 | 663 | 303 | 7 | 20 | 666 | 17 | 672 | 0.0 | 696 |
| MS.gene049642.t1 | MTR_1g077840 | 50.151 | 662 | 307 | 7 | 20 | 665 | 25 | 679 | 0.0 | 696 |
| MS.gene049642.t1 | MTR_5g091615 | 87.500 | 160 | 20 | 0 | 515 | 674 | 59 | 218 | 7.28e-89 | 280 |
| MS.gene049642.t1 | MTR_1626s0010 | 50.424 | 236 | 113 | 2 | 207 | 442 | 4 | 235 | 4.10e-80 | 254 |
| MS.gene049642.t1 | MTR_0312s0050 | 49.593 | 123 | 51 | 3 | 16 | 127 | 1 | 123 | 4.81e-32 | 120 |
| MS.gene049642.t1 | MTR_2g083230 | 82.609 | 46 | 5 | 1 | 129 | 171 | 34 | 79 | 4.80e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049642.t1 | AT1G65730 | 75.595 | 672 | 143 | 7 | 21 | 676 | 19 | 685 | 0.0 | 1035 |
| MS.gene049642.t1 | AT3G17650 | 71.128 | 665 | 175 | 4 | 29 | 676 | 46 | 710 | 0.0 | 946 |
| MS.gene049642.t1 | AT3G17650 | 71.128 | 665 | 175 | 4 | 29 | 676 | 46 | 710 | 0.0 | 946 |
| MS.gene049642.t1 | AT1G48370 | 70.571 | 666 | 178 | 4 | 29 | 676 | 55 | 720 | 0.0 | 929 |
| MS.gene049642.t1 | AT3G27020 | 57.207 | 666 | 264 | 6 | 23 | 669 | 13 | 676 | 0.0 | 766 |
| MS.gene049642.t1 | AT1G48370 | 69.120 | 557 | 154 | 4 | 138 | 676 | 1 | 557 | 0.0 | 754 |
| MS.gene049642.t1 | AT5G53550 | 55.341 | 674 | 274 | 8 | 8 | 664 | 6 | 669 | 0.0 | 741 |
| MS.gene049642.t1 | AT5G53550 | 55.341 | 674 | 274 | 8 | 8 | 664 | 6 | 669 | 0.0 | 741 |
| MS.gene049642.t1 | AT5G53550 | 55.341 | 674 | 274 | 8 | 8 | 664 | 6 | 669 | 0.0 | 741 |
| MS.gene049642.t1 | AT5G53550 | 55.341 | 674 | 274 | 8 | 8 | 664 | 6 | 669 | 0.0 | 741 |
| MS.gene049642.t1 | AT5G53550 | 55.341 | 674 | 274 | 8 | 8 | 664 | 6 | 669 | 0.0 | 741 |
| MS.gene049642.t1 | AT5G41000 | 54.644 | 646 | 274 | 5 | 35 | 663 | 24 | 667 | 0.0 | 725 |
| MS.gene049642.t1 | AT4G24120 | 52.647 | 680 | 291 | 7 | 1 | 665 | 9 | 672 | 0.0 | 722 |
| MS.gene049642.t1 | AT5G24380 | 52.656 | 659 | 290 | 6 | 22 | 663 | 7 | 660 | 0.0 | 710 |
| MS.gene049642.t1 | AT5G41000 | 52.477 | 646 | 263 | 6 | 35 | 663 | 24 | 642 | 0.0 | 684 |
| MS.gene049642.t1 | AT5G53550 | 57.670 | 515 | 200 | 4 | 160 | 664 | 1 | 507 | 0.0 | 600 |
| MS.gene049642.t1 | AT5G41000 | 53.753 | 493 | 215 | 4 | 182 | 663 | 1 | 491 | 0.0 | 551 |
| MS.gene049642.t1 | AT5G45450 | 64.679 | 218 | 71 | 1 | 459 | 676 | 1 | 212 | 4.47e-95 | 293 |
Find 160 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTTGTTGTTAGCTTTCT+TGG | 0.055871 | 3.2:-59436067 | MS.gene049642:CDS |
| AATGTTTCTGCTGGGTTGTT+AGG | 0.216597 | 3.2:-59436497 | MS.gene049642:CDS |
| GAAGCTTGATATTGTTTATT+TGG | 0.238786 | 3.2:-59433977 | MS.gene049642:CDS |
| GTTCTTGGCACAACTCTTAT+AGG | 0.241739 | 3.2:-59434818 | MS.gene049642:CDS |
| GCTAAGGTTGATAAGTTCTT+AGG | 0.244541 | 3.2:-59433798 | MS.gene049642:CDS |
| GAGGAGATCTCTGTGGAAAA+AGG | 0.248700 | 3.2:-59436656 | MS.gene049642:CDS |
| ATGTTTGTGAGCCAAGTTAT+TGG | 0.272519 | 3.2:-59434320 | MS.gene049642:CDS |
| GCCGGTGCCATGATTATTAA+TGG | 0.276061 | 3.2:-59434107 | MS.gene049642:CDS |
| TACAACTTTGGGAAAGTTCT+TGG | 0.281237 | 3.2:-59434833 | MS.gene049642:CDS |
| TGATATGTGGAGATGGAATT+TGG | 0.283833 | 3.2:-59433899 | MS.gene049642:CDS |
| AACGAAATATTGGTTATATA+TGG | 0.289135 | 3.2:+59435295 | None:intergenic |
| ACCGATCAACAACGAAATAT+TGG | 0.300050 | 3.2:+59435285 | None:intergenic |
| CCCTCATGGTTCGCAATTGC+AGG | 0.302996 | 3.2:-59434668 | MS.gene049642:CDS |
| GTATTCTCCTGTCTGGTAAA+AGG | 0.329015 | 3.2:+59436416 | None:intergenic |
| CCTTCGTTGAATGTTTCTGC+TGG | 0.339721 | 3.2:-59436506 | MS.gene049642:CDS |
| AAATTAGCCATCTTCGCTAT+TGG | 0.346002 | 3.2:-59434482 | MS.gene049642:CDS |
| TGATCGGTGGAATTCTTTCA+TGG | 0.350906 | 3.2:-59435270 | MS.gene049642:CDS |
| CCATCTTCGCTATTGGTGCT+TGG | 0.352652 | 3.2:-59434475 | MS.gene049642:CDS |
| TTATTTGGCAGAAGGTTGAT+AGG | 0.352931 | 3.2:-59433962 | MS.gene049642:CDS |
| AAGTAGCTTCCAATGTAAAA+TGG | 0.358086 | 3.2:+59434020 | None:intergenic |
| ATAGGCATAGCAATGATTCT+TGG | 0.363000 | 3.2:-59434866 | MS.gene049642:CDS |
| TTTGCAAACTTCCCCACATT+TGG | 0.363476 | 3.2:-59435617 | MS.gene049642:CDS |
| AGGGTTAAGGCTGATGCATT+TGG | 0.365863 | 3.2:-59433942 | MS.gene049642:CDS |
| TAGGTTTGTATAAACAATTA+TGG | 0.370836 | 3.2:-59434799 | MS.gene049642:CDS |
| GGGTTTGGTAGCTACTTGTT+TGG | 0.371080 | 3.2:-59436169 | MS.gene049642:CDS |
| GACAAGAATTTCAAGCAAAT+AGG | 0.372634 | 3.2:+59433834 | None:intergenic |
| TGGCTATTCTACAACGCTTT+CGG | 0.377582 | 3.2:-59434260 | MS.gene049642:CDS |
| GTAGGGGAGAGAGGAGCATT+TGG | 0.378591 | 3.2:+59434743 | None:intergenic |
| GACACCACATGCTGCTAAAC+CGG | 0.383267 | 3.2:+59434424 | None:intergenic |
| TGGCTCACAAACATGGATTT+CGG | 0.390640 | 3.2:+59434329 | None:intergenic |
| GCCAATGATGTTAAGAGTCT+TGG | 0.398551 | 3.2:-59436112 | MS.gene049642:CDS |
| GTGATGGTCTATACAACTTT+GGG | 0.399347 | 3.2:-59434844 | MS.gene049642:CDS |
| CTTGCTTGTGTAGGTGGGTT+TGG | 0.399991 | 3.2:-59436184 | MS.gene049642:intron |
| GGTGATGGTCTATACAACTT+TGG | 0.401168 | 3.2:-59434845 | MS.gene049642:CDS |
| GTTTGGCACCTTCTGATGTA+TGG | 0.401190 | 3.2:+59435738 | None:intergenic |
| ATGAAGTTGAATCTCACAAC+TGG | 0.401497 | 3.2:-59436536 | MS.gene049642:CDS |
| TTCGCTATTGGTGCTTGGGC+AGG | 0.404021 | 3.2:-59434470 | MS.gene049642:CDS |
| TTTCGATAAACGAGGGCGTT+AGG | 0.407080 | 3.2:+59434203 | None:intergenic |
| TGTTCCTACGTGGCAGAAAC+AGG | 0.407557 | 3.2:-59436618 | MS.gene049642:CDS |
| CTGCTTTGTTTGAGATCAGC+AGG | 0.407652 | 3.2:+59435202 | None:intergenic |
| CATCTTCGCTATTGGTGCTT+GGG | 0.418097 | 3.2:-59434474 | MS.gene049642:CDS |
| GATGTTAAGAGTCTTGGTTT+AGG | 0.418370 | 3.2:-59436106 | MS.gene049642:CDS |
| GGTGTCATGTGGCCTGTCAT+TGG | 0.420401 | 3.2:-59435247 | MS.gene049642:CDS |
| GCAGAAGGTTGATAGGGTTA+AGG | 0.423744 | 3.2:-59433955 | MS.gene049642:CDS |
| CTTATGCAAGACTTCAAAAC+AGG | 0.423970 | 3.2:-59434371 | MS.gene049642:CDS |
| GGCAGAAACAGGTTACGGTT+AGG | 0.425396 | 3.2:-59436607 | MS.gene049642:CDS |
| TAAACGAGGGCGTTAGGTGC+AGG | 0.426821 | 3.2:+59434209 | None:intergenic |
| CGGCATGGCTGCGGTTGCAC+CGG | 0.427222 | 3.2:-59436699 | MS.gene049642:CDS |
| TGGTCCCTTGCATCGACTTA+CGG | 0.438370 | 3.2:-59434506 | MS.gene049642:CDS |
| ATGAGGGGATTTGATCTTTG+AGG | 0.439237 | 3.2:+59434684 | None:intergenic |
| GCAGAAACAGGTTACGGTTA+GGG | 0.440923 | 3.2:-59436606 | MS.gene049642:CDS |
| ACCAAGACTCTTAACATCAT+TGG | 0.446254 | 3.2:+59436111 | None:intergenic |
| ATGTTTCTGCTGGGTTGTTA+GGG | 0.449011 | 3.2:-59436496 | MS.gene049642:CDS |
| CCATAGCAGTTCCAATAACT+TGG | 0.450305 | 3.2:+59434309 | None:intergenic |
| TTCGGTACTCTTGGTCAACC+TGG | 0.450819 | 3.2:-59434242 | MS.gene049642:CDS |
| GATCGGTGGAATTCTTTCAT+GGG | 0.451529 | 3.2:-59435269 | MS.gene049642:CDS |
| TTTGGATCAGCTGTTGCGTC+CGG | 0.451755 | 3.2:-59433924 | MS.gene049642:CDS |
| ACTTGTGTTGTTGCTGCTAG+TGG | 0.451917 | 3.2:-59436383 | MS.gene049642:CDS |
| CAACTATATTCCTGTTCCTA+TGG | 0.451960 | 3.2:-59434054 | MS.gene049642:CDS |
| TTAAGAGTCTTGGTTTAGGA+TGG | 0.456468 | 3.2:-59436102 | MS.gene049642:CDS |
| TATCGAAACATGGCTATACT+AGG | 0.461201 | 3.2:-59434188 | MS.gene049642:CDS |
| AGCAGCTTACATGGTCTTCA+AGG | 0.462139 | 3.2:-59435184 | MS.gene049642:CDS |
| CCAAGCACCAATAGCGAAGA+TGG | 0.462172 | 3.2:+59434475 | None:intergenic |
| ACCAGCTTTCTCAAGCAACT+TGG | 0.467323 | 3.2:+59436451 | None:intergenic |
| CCAAGTTATTGGAACTGCTA+TGG | 0.469421 | 3.2:-59434309 | MS.gene049642:CDS |
| CTTCGTTGAATGTTTCTGCT+GGG | 0.472472 | 3.2:-59436505 | MS.gene049642:CDS |
| CTCAAACAAAGCAGCTTACA+TGG | 0.473967 | 3.2:-59435193 | MS.gene049642:CDS |
| ACCAATATTTCGTTGTTGAT+CGG | 0.478557 | 3.2:-59435286 | MS.gene049642:CDS |
| GCCGTGGCTTTCGACGTCAT+AGG | 0.479696 | 3.2:+59436718 | None:intergenic |
| TACAACGCTTTCGGTACTCT+TGG | 0.482640 | 3.2:-59434251 | MS.gene049642:CDS |
| CTTTAGCTGGTGGAAAATGA+AGG | 0.487926 | 3.2:+59434607 | None:intergenic |
| AAACTTCCCCACATTTGGTC+TGG | 0.492239 | 3.2:-59435612 | MS.gene049642:CDS |
| TGATGTAATACCACTTTAGC+TGG | 0.492701 | 3.2:+59434594 | None:intergenic |
| CCAAATATTGCAAAACAAGC+TGG | 0.494078 | 3.2:-59436139 | MS.gene049642:CDS |
| CAAGTTATTGGAACTGCTAT+GGG | 0.494211 | 3.2:-59434308 | MS.gene049642:CDS |
| GAGAGGAGCATTTGGATCAT+CGG | 0.497596 | 3.2:+59434751 | None:intergenic |
| GCTTGGGCAGGTGCGTCTAA+CGG | 0.499684 | 3.2:-59434458 | MS.gene049642:CDS |
| TTCTTTCATGGGGTGTCATG+TGG | 0.500744 | 3.2:-59435258 | MS.gene049642:CDS |
| TCCATCTCCACATATCAAAC+CGG | 0.501705 | 3.2:+59433905 | None:intergenic |
| ATAGCCATAGCCATAGGAAC+AGG | 0.504745 | 3.2:+59434044 | None:intergenic |
| GATATTGTTTATTTGGCAGA+AGG | 0.507191 | 3.2:-59433970 | MS.gene049642:CDS |
| TTTGCTATTGATATGTGTGT+TGG | 0.507636 | 3.2:-59433999 | MS.gene049642:CDS |
| AATAACAGTATTCTCCTGTC+TGG | 0.507862 | 3.2:+59436409 | None:intergenic |
| CCGTGGCTTTCGACGTCATA+GGG | 0.509154 | 3.2:+59436719 | None:intergenic |
| TATTCCTGTTCCTATGGCTA+TGG | 0.510164 | 3.2:-59434048 | MS.gene049642:CDS |
| CGAAAGCCACGGCATGGCTG+CGG | 0.511258 | 3.2:-59436708 | MS.gene049642:CDS |
| TGTCGTCGAATGAAAGTGTA+GGG | 0.513370 | 3.2:+59434726 | None:intergenic |
| TGAGCTGTTGCGGTACCACT+TGG | 0.516027 | 3.2:+59435776 | None:intergenic |
| TCTAACGGCGGTGTCCTAGC+CGG | 0.520318 | 3.2:-59434443 | MS.gene049642:CDS |
| TATTTGGCAGAAGGTTGATA+GGG | 0.521362 | 3.2:-59433961 | MS.gene049642:CDS |
| GCGAACACCATTAATAATCA+TGG | 0.526943 | 3.2:+59434100 | None:intergenic |
| GAAAATGAAGGGGATGGTAA+TGG | 0.530222 | 3.2:+59434619 | None:intergenic |
| AATAACTTGGCTCACAAACA+TGG | 0.530485 | 3.2:+59434322 | None:intergenic |
| GTTGCGTCCGGTTTGATATG+TGG | 0.530851 | 3.2:-59433912 | MS.gene049642:CDS |
| TTCAGTGGTTCCACTCCGAA+AGG | 0.534003 | 3.2:-59436038 | MS.gene049642:intron |
| AATATTTCGTTGTTGATCGG+TGG | 0.535914 | 3.2:-59435283 | MS.gene049642:CDS |
| CATAGGAACAGGAATATAGT+TGG | 0.536080 | 3.2:+59434055 | None:intergenic |
| TGCCTATGGTTGTGGACTAA+CGG | 0.537350 | 3.2:-59434531 | MS.gene049642:CDS |
| AATGGTGTTCGCGACTATGT+CGG | 0.539051 | 3.2:-59434089 | MS.gene049642:CDS |
| CGCCCTCGTTTATCGAAACA+TGG | 0.542039 | 3.2:-59434198 | MS.gene049642:CDS |
| AATGAAAGTGTAGGGGAGAG+AGG | 0.542386 | 3.2:+59434734 | None:intergenic |
| ACCAAGTTGCTTGAGAAAGC+TGG | 0.544740 | 3.2:-59436452 | MS.gene049642:CDS |
| ACCATTAATAATCATGGCAC+CGG | 0.545307 | 3.2:+59434106 | None:intergenic |
| GTGCAACCGCAGCCATGCCG+TGG | 0.547128 | 3.2:+59436702 | None:intergenic |
| GCATTGCAAAAGGCTAGTGC+AGG | 0.548633 | 3.2:+59434551 | None:intergenic |
| ATAGGCTTCCAGACCAAATG+TGG | 0.549567 | 3.2:+59435604 | None:intergenic |
| TTGATCTTTGAGGAACATCT+CGG | 0.554704 | 3.2:+59434694 | None:intergenic |
| TTCAGTGCTAGTGATGATTG+TGG | 0.556606 | 3.2:-59435641 | MS.gene049642:CDS |
| ATGGTTGTGGACTAACGGAT+TGG | 0.556934 | 3.2:-59434526 | MS.gene049642:CDS |
| ATTTGTGAGTCTCATGTTGT+CGG | 0.557992 | 3.2:-59436579 | MS.gene049642:CDS |
| ACAACCATAGGCATTGCAAA+AGG | 0.564312 | 3.2:+59434541 | None:intergenic |
| AGGGCGTTAGGTGCAGGGTA+TGG | 0.565245 | 3.2:+59434215 | None:intergenic |
| AACAGTTTCCATACATCAGA+AGG | 0.565961 | 3.2:-59435746 | MS.gene049642:intron |
| ATCGGTGGAATTCTTTCATG+GGG | 0.567187 | 3.2:-59435268 | MS.gene049642:CDS |
| AAACGAGGGCGTTAGGTGCA+GGG | 0.569241 | 3.2:+59434210 | None:intergenic |
| TTGTCGTCGAATGAAAGTGT+AGG | 0.575329 | 3.2:+59434725 | None:intergenic |
| GCAAGAGCAAGAAAAGAGCT+AGG | 0.577753 | 3.2:+59433870 | None:intergenic |
| GGTGCAGGGTATGGTGAACC+AGG | 0.579015 | 3.2:+59434224 | None:intergenic |
| CTGCAATTGCGAACCATGAG+GGG | 0.583286 | 3.2:+59434669 | None:intergenic |
| AAGAATTTCAAGCAAATAGG+TGG | 0.584879 | 3.2:+59433837 | None:intergenic |
| ATCCGTTAGTCCACAACCAT+AGG | 0.586179 | 3.2:+59434529 | None:intergenic |
| TTTAGCTGGTGGAAAATGAA+GGG | 0.586752 | 3.2:+59434608 | None:intergenic |
| CAAAACAGGTTACATGACAA+TGG | 0.590728 | 3.2:-59434357 | MS.gene049642:CDS |
| GTCAAGAGCAGCAAATGCTA+AGG | 0.594984 | 3.2:-59433814 | MS.gene049642:CDS |
| AATGGTATAGCCATAGCCAT+AGG | 0.595250 | 3.2:+59434038 | None:intergenic |
| CCCTATGACGTCGAAAGCCA+CGG | 0.598986 | 3.2:-59436719 | MS.gene049642:CDS |
| ATAGCAATGATTCTTGGTGA+TGG | 0.599500 | 3.2:-59434860 | MS.gene049642:CDS |
| AAACATGGCTATACTAGGTG+TGG | 0.601524 | 3.2:-59434183 | MS.gene049642:CDS |
| CCTGCAATTGCGAACCATGA+GGG | 0.604092 | 3.2:+59434668 | None:intergenic |
| TCCGGTTTGATATGTGGAGA+TGG | 0.612716 | 3.2:-59433906 | MS.gene049642:CDS |
| TACGTGGCAGAAACAGGTTA+CGG | 0.614426 | 3.2:-59436612 | MS.gene049642:CDS |
| TCAAAGATCAAATCCCCTCA+TGG | 0.616210 | 3.2:-59434682 | MS.gene049642:CDS |
| TGACGTCGAAAGCCACGGCA+TGG | 0.618397 | 3.2:-59436714 | MS.gene049642:CDS |
| AGTTGCTTGAGAAAGCTGGT+TGG | 0.620575 | 3.2:-59436448 | MS.gene049642:CDS |
| CACATGCTGCTAAACCGGCT+AGG | 0.621749 | 3.2:+59434429 | None:intergenic |
| TGCTTTGTTTGAGATCAGCA+GGG | 0.627385 | 3.2:+59435203 | None:intergenic |
| TGTAATACCACTTTAGCTGG+TGG | 0.629875 | 3.2:+59434597 | None:intergenic |
| ATGGCTATACTAGGTGTGGA+CGG | 0.647638 | 3.2:-59434179 | MS.gene049642:CDS |
| TAGGCTTCCAGACCAAATGT+GGG | 0.650528 | 3.2:+59435605 | None:intergenic |
| TTAGCTGGTGGAAAATGAAG+GGG | 0.653662 | 3.2:+59434609 | None:intergenic |
| CTGGTGGAAAATGAAGGGGA+TGG | 0.654258 | 3.2:+59434613 | None:intergenic |
| TGGGCAGGTGCGTCTAACGG+CGG | 0.655359 | 3.2:-59434455 | MS.gene049642:CDS |
| GTTGATAAGATGAGCTGTTG+CGG | 0.660296 | 3.2:+59435766 | None:intergenic |
| AGTTGTTCATCATTCAACAC+CGG | 0.662303 | 3.2:+59436680 | None:intergenic |
| GCCTGCAATTGCGAACCATG+AGG | 0.668031 | 3.2:+59434667 | None:intergenic |
| TAGTACTGTACCTTTCGGAG+TGG | 0.669012 | 3.2:+59436028 | None:intergenic |
| TGAAGTTGAATCTCACAACT+GGG | 0.670966 | 3.2:-59436535 | MS.gene049642:CDS |
| TAGAATAGCCAGAAAACACA+TGG | 0.680447 | 3.2:+59434272 | None:intergenic |
| GTTGAATGATGAACAACTTG+AGG | 0.685365 | 3.2:-59436675 | MS.gene049642:CDS |
| TAGCCATGTTTCGATAAACG+AGG | 0.685399 | 3.2:+59434195 | None:intergenic |
| TTCAAACTGACATATCCAAG+TGG | 0.687798 | 3.2:-59435791 | MS.gene049642:CDS |
| ACAACTTGAGGAGATCTCTG+TGG | 0.691473 | 3.2:-59436663 | MS.gene049642:CDS |
| GCTAGTGGAATTGCATTCAG+CGG | 0.695424 | 3.2:-59436368 | MS.gene049642:intron |
| CTAGCCGGTTTAGCAGCATG+TGG | 0.697720 | 3.2:-59434428 | MS.gene049642:CDS |
| AGCCATGTTTCGATAAACGA+GGG | 0.699106 | 3.2:+59434196 | None:intergenic |
| CCAGCAGAAACATTCAACGA+AGG | 0.700492 | 3.2:+59436506 | None:intergenic |
| AGGCTTCCAGACCAAATGTG+GGG | 0.704515 | 3.2:+59435606 | None:intergenic |
| GTCGTCGAATGAAAGTGTAG+GGG | 0.705258 | 3.2:+59434727 | None:intergenic |
| GTAACCTGTTTCTGCCACGT+AGG | 0.720663 | 3.2:+59436614 | None:intergenic |
| AAGGAACATCTGTTCCTACG+TGG | 0.720715 | 3.2:-59436628 | MS.gene049642:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATGAAAGAATTTAAAA+TGG | - | chr3.2:59434975-59434994 | MS.gene049642:intron | 10.0% |
| !! | AACATCAAATTAAAACTAAA+TGG | + | chr3.2:59434684-59434703 | None:intergenic | 15.0% |
| !! | TATTATTTAATGTACATAAC+AGG | - | chr3.2:59435156-59435175 | MS.gene049642:intron | 15.0% |
| !! | AAAGTATACTTACAAAAAAG+TGG | + | chr3.2:59435447-59435466 | None:intergenic | 20.0% |
| !! | TAAATGTTAGCTAAAAGAAA+AGG | + | chr3.2:59435138-59435157 | None:intergenic | 20.0% |
| !! | TAGGTTTGTATAAACAATTA+TGG | - | chr3.2:59435723-59435742 | MS.gene049642:intron | 20.0% |
| !!! | AACGAAATATTGGTTATATA+TGG | + | chr3.2:59435230-59435249 | None:intergenic | 20.0% |
| !!! | AACTTGTTCTAAAAACTATT+AGG | + | chr3.2:59434239-59434258 | None:intergenic | 20.0% |
| !!! | ACTTGTTCTAAAAACTATTA+GGG | + | chr3.2:59434238-59434257 | None:intergenic | 20.0% |
| !!! | ACTTTTTTGTAAGTATACTT+TGG | - | chr3.2:59435446-59435465 | MS.gene049642:intron | 20.0% |
| !!! | GGGTTAAATTGATTTTATTA+AGG | + | chr3.2:59434544-59434563 | None:intergenic | 20.0% |
| !!! | TGTTTTAAATTGATTGAACA+AGG | + | chr3.2:59434569-59434588 | None:intergenic | 20.0% |
| ! | AGATTTGTCAACAACAAATA+AGG | + | chr3.2:59434305-59434324 | None:intergenic | 25.0% |
| ! | CAACTTAAAACACAGTAAAT+TGG | - | chr3.2:59435506-59435525 | MS.gene049642:intron | 25.0% |
| ! | CAATAGAATACATTATCAAC+CGG | + | chr3.2:59435596-59435615 | None:intergenic | 25.0% |
| ! | GAAGCTTGATATTGTTTATT+TGG | - | chr3.2:59436545-59436564 | MS.gene049642:CDS | 25.0% |
| ! | TAAAACAATTGAACATGACT+TGG | - | chr3.2:59434582-59434601 | MS.gene049642:CDS | 25.0% |
| ! | TTAAATTGATTGAACAAGGA+CGG | + | chr3.2:59434565-59434584 | None:intergenic | 25.0% |
| !!! | TGAATCGATTTTTAAAACGT+GGG | - | chr3.2:59434626-59434645 | MS.gene049642:CDS | 25.0% |
| !!! | TTGAATCGATTTTTAAAACG+TGG | - | chr3.2:59434625-59434644 | MS.gene049642:CDS | 25.0% |
| AAAAACTGCATCATACTTTG+CGG | - | chr3.2:59436382-59436401 | MS.gene049642:CDS | 30.0% | |
| AACAATCATAATCTGCAACA+AGG | + | chr3.2:59434708-59434727 | None:intergenic | 30.0% | |
| AACCTCTATGTTCTCAATTA+TGG | - | chr3.2:59435034-59435053 | MS.gene049642:intron | 30.0% | |
| AAGAATTTCAAGCAAATAGG+TGG | + | chr3.2:59436688-59436707 | None:intergenic | 30.0% | |
| AAGTAGCTTCCAATGTAAAA+TGG | + | chr3.2:59436505-59436524 | None:intergenic | 30.0% | |
| ACAAGTACAAAACTGGAATT+TGG | - | chr3.2:59435535-59435554 | MS.gene049642:intron | 30.0% | |
| ACCAATATTTCGTTGTTGAT+CGG | - | chr3.2:59435236-59435255 | MS.gene049642:CDS | 30.0% | |
| AGTCAAGTATTAAACTGAAG+TGG | + | chr3.2:59434192-59434211 | None:intergenic | 30.0% | |
| GACAAGAATTTCAAGCAAAT+AGG | + | chr3.2:59436691-59436710 | None:intergenic | 30.0% | |
| GATATTGTTTATTTGGCAGA+AGG | - | chr3.2:59436552-59436571 | MS.gene049642:CDS | 30.0% | |
| GATTGAAACAAGTACAAAAC+TGG | - | chr3.2:59435528-59435547 | MS.gene049642:intron | 30.0% | |
| TAAATTGATTGAACAAGGAC+GGG | + | chr3.2:59434564-59434583 | None:intergenic | 30.0% | |
| TTGTATTCTCTCTAAACTAC+AGG | - | chr3.2:59435628-59435647 | MS.gene049642:CDS | 30.0% | |
| ! | ATGGCTATACCATTTTACAT+TGG | - | chr3.2:59436493-59436512 | MS.gene049642:CDS | 30.0% |
| ! | CAAAGTATGATGCAGTTTTT+CGG | + | chr3.2:59436382-59436401 | None:intergenic | 30.0% |
| ! | TCTAAACTACAGGTTTTCAT+AGG | - | chr3.2:59435638-59435657 | MS.gene049642:CDS | 30.0% |
| ! | TTTGATAGTACTGTACCTTT+CGG | + | chr3.2:59434502-59434521 | None:intergenic | 30.0% |
| !! | CGGTTGATAATGTATTCTAT+TGG | - | chr3.2:59435594-59435613 | MS.gene049642:intron | 30.0% |
| !! | CTATTTGTTGTTAGCTTTCT+TGG | - | chr3.2:59434455-59434474 | MS.gene049642:CDS | 30.0% |
| !! | TTTGCTATTGATATGTGTGT+TGG | - | chr3.2:59436523-59436542 | MS.gene049642:CDS | 30.0% |
| !!! | TAGATCTTTTTCAATGTGAC+CGG | - | chr3.2:59435574-59435593 | MS.gene049642:intron | 30.0% |
| AAATTAGCCATCTTCGCTAT+TGG | - | chr3.2:59436040-59436059 | MS.gene049642:CDS | 35.0% | |
| AACAGTTTCCATACATCAGA+AGG | - | chr3.2:59434776-59434795 | MS.gene049642:CDS | 35.0% | |
| AATAACAGTATTCTCCTGTC+TGG | + | chr3.2:59434116-59434135 | None:intergenic | 35.0% | |
| AATAACTTGGCTCACAAACA+TGG | + | chr3.2:59436203-59436222 | None:intergenic | 35.0% | |
| AATATTTCGTTGTTGATCGG+TGG | - | chr3.2:59435239-59435258 | MS.gene049642:CDS | 35.0% | |
| ACCAAGACTCTTAACATCAT+TGG | + | chr3.2:59434414-59434433 | None:intergenic | 35.0% | |
| ACCATTAATAATCATGGCAC+CGG | + | chr3.2:59436419-59436438 | None:intergenic | 35.0% | |
| ACCGATCAACAACGAAATAT+TGG | + | chr3.2:59435240-59435259 | None:intergenic | 35.0% | |
| AGTTGTTCATCATTCAACAC+CGG | + | chr3.2:59433845-59433864 | None:intergenic | 35.0% | |
| ATAGCAATGATTCTTGGTGA+TGG | - | chr3.2:59435662-59435681 | MS.gene049642:CDS | 35.0% | |
| ATAGGCATAGCAATGATTCT+TGG | - | chr3.2:59435656-59435675 | MS.gene049642:CDS | 35.0% | |
| ATGAAGTTGAATCTCACAAC+TGG | - | chr3.2:59433986-59434005 | MS.gene049642:CDS | 35.0% | |
| ATGTTTGTGAGCCAAGTTAT+TGG | - | chr3.2:59436202-59436221 | MS.gene049642:intron | 35.0% | |
| ATTTGTGAGTCTCATGTTGT+CGG | - | chr3.2:59433943-59433962 | MS.gene049642:CDS | 35.0% | |
| CAAAACAGGTTACATGACAA+TGG | - | chr3.2:59436165-59436184 | MS.gene049642:CDS | 35.0% | |
| CAACTATATTCCTGTTCCTA+TGG | - | chr3.2:59436468-59436487 | MS.gene049642:CDS | 35.0% | |
| CAAGTTATTGGAACTGCTAT+GGG | - | chr3.2:59436214-59436233 | MS.gene049642:intron | 35.0% | |
| CACCATAATTGAGAACATAG+AGG | + | chr3.2:59435039-59435058 | None:intergenic | 35.0% | |
| CATAGGAACAGGAATATAGT+TGG | + | chr3.2:59436470-59436489 | None:intergenic | 35.0% | |
| CCAAATATTGCAAAACAAGC+TGG | - | chr3.2:59434383-59434402 | MS.gene049642:CDS | 35.0% | |
| CTTATGCAAGACTTCAAAAC+AGG | - | chr3.2:59436151-59436170 | MS.gene049642:CDS | 35.0% | |
| GAACATAGAGGTTTCAGTTT+CGG | + | chr3.2:59435027-59435046 | None:intergenic | 35.0% | |
| GATGTTAAGAGTCTTGGTTT+AGG | - | chr3.2:59434416-59434435 | MS.gene049642:CDS | 35.0% | |
| GCGAACACCATTAATAATCA+TGG | + | chr3.2:59436425-59436444 | None:intergenic | 35.0% | |
| GTGATGGTCTATACAACTTT+GGG | - | chr3.2:59435678-59435697 | MS.gene049642:CDS | 35.0% | |
| GTTGAATGATGAACAACTTG+AGG | - | chr3.2:59433847-59433866 | MS.gene049642:CDS | 35.0% | |
| TACTTGCTTCTTTGCTAGTT+TGG | + | chr3.2:59434804-59434823 | None:intergenic | 35.0% | |
| TAGAATAGCCAGAAAACACA+TGG | + | chr3.2:59436253-59436272 | None:intergenic | 35.0% | |
| TATCGAAACATGGCTATACT+AGG | - | chr3.2:59436334-59436353 | MS.gene049642:intron | 35.0% | |
| TGAAGTTGAATCTCACAACT+GGG | - | chr3.2:59433987-59434006 | MS.gene049642:CDS | 35.0% | |
| TGATATGTGGAGATGGAATT+TGG | - | chr3.2:59436623-59436642 | MS.gene049642:CDS | 35.0% | |
| TGATGTAATACCACTTTAGC+TGG | + | chr3.2:59435931-59435950 | None:intergenic | 35.0% | |
| TTAAGAGTCTTGGTTTAGGA+TGG | - | chr3.2:59434420-59434439 | MS.gene049642:CDS | 35.0% | |
| TTCAAACTGACATATCCAAG+TGG | - | chr3.2:59434731-59434750 | MS.gene049642:CDS | 35.0% | |
| TTTAGCTGGTGGAAAATGAA+GGG | + | chr3.2:59435917-59435936 | None:intergenic | 35.0% | |
| ! | ATTTTTCTGCAACCTATGTG+GGG | - | chr3.2:59435189-59435208 | MS.gene049642:CDS | 35.0% |
| ! | GATTTTTCTGCAACCTATGT+GGG | - | chr3.2:59435188-59435207 | MS.gene049642:CDS | 35.0% |
| ! | GGTTTTTCTTTGTGAAGACA+TGG | - | chr3.2:59434047-59434066 | MS.gene049642:CDS | 35.0% |
| ! | TAATCAACCTTTTACCAGAC+AGG | - | chr3.2:59434099-59434118 | MS.gene049642:CDS | 35.0% |
| ! | TACAACTTTGGGAAAGTTCT+TGG | - | chr3.2:59435689-59435708 | MS.gene049642:CDS | 35.0% |
| ! | TGATTTTTCTGCAACCTATG+TGG | - | chr3.2:59435187-59435206 | MS.gene049642:CDS | 35.0% |
| ! | TTATATCGCCATGTGTTTTC+TGG | - | chr3.2:59436242-59436261 | MS.gene049642:intron | 35.0% |
| ! | TTATTTGGCAGAAGGTTGAT+AGG | - | chr3.2:59436560-59436579 | MS.gene049642:CDS | 35.0% |
| ! | TTGATCTTTGAGGAACATCT+CGG | + | chr3.2:59435831-59435850 | None:intergenic | 35.0% |
| !! | AAGAAGCAAGTAAAAGCACT+TGG | - | chr3.2:59434812-59434831 | MS.gene049642:CDS | 35.0% |
| !! | GCTAAGGTTGATAAGTTCTT+AGG | - | chr3.2:59436724-59436743 | MS.gene049642:CDS | 35.0% |
| !! | TATTTGGCAGAAGGTTGATA+GGG | - | chr3.2:59436561-59436580 | MS.gene049642:CDS | 35.0% |
| !! | TTGGTGCTAAAAAAGGAGAT+TGG | - | chr3.2:59435294-59435313 | MS.gene049642:CDS | 35.0% |
| !!! | AGTCACGTACTTGTTTTGAT+AGG | + | chr3.2:59434939-59434958 | None:intergenic | 35.0% |
| !!! | CCAGCTTGTTTTGCAATATT+TGG | + | chr3.2:59434386-59434405 | None:intergenic | 35.0% |
| !!! | CGATTTTTAAAACGTGGGAT+GGG | - | chr3.2:59434631-59434650 | MS.gene049642:CDS | 35.0% |
| !!! | CTTCTCCTTTAGCTTTTTGT+GGG | - | chr3.2:59434841-59434860 | MS.gene049642:CDS | 35.0% |
| !!! | TCGATTTTTAAAACGTGGGA+TGG | - | chr3.2:59434630-59434649 | MS.gene049642:CDS | 35.0% |
| !!! | TCTTCTCCTTTAGCTTTTTG+TGG | - | chr3.2:59434840-59434859 | MS.gene049642:CDS | 35.0% |
| !!! | TTCTCCTTTAGCTTTTTGTG+GGG | - | chr3.2:59434842-59434861 | MS.gene049642:CDS | 35.0% |
| AAACATGGCTATACTAGGTG+TGG | - | chr3.2:59436339-59436358 | MS.gene049642:intron | 40.0% | |
| AATGGTATAGCCATAGCCAT+AGG | + | chr3.2:59436487-59436506 | None:intergenic | 40.0% | |
| AGCCATGTTTCGATAAACGA+GGG | + | chr3.2:59436329-59436348 | None:intergenic | 40.0% | |
| AGGAGATCTCTGTGGAAAAA+GGG | - | chr3.2:59433867-59433886 | MS.gene049642:CDS | 40.0% | |
| ATAGAGGTTTCAGTTTCGGT+CGG | + | chr3.2:59435023-59435042 | None:intergenic | 40.0% | |
| ATCGGTGGAATTCTTTCATG+GGG | - | chr3.2:59435254-59435273 | MS.gene049642:CDS | 40.0% | |
| ATGAGGGGATTTGATCTTTG+AGG | + | chr3.2:59435841-59435860 | None:intergenic | 40.0% | |
| ATTTGCTTGCTTGTGTAGGT+GGG | - | chr3.2:59434333-59434352 | MS.gene049642:CDS | 40.0% | |
| CCAAGTTATTGGAACTGCTA+TGG | - | chr3.2:59436213-59436232 | MS.gene049642:intron | 40.0% | |
| CCATAGCAGTTCCAATAACT+TGG | + | chr3.2:59436216-59436235 | None:intergenic | 40.0% | |
| CTCAAACAAAGCAGCTTACA+TGG | - | chr3.2:59435329-59435348 | MS.gene049642:CDS | 40.0% | |
| CTTTAGCTGGTGGAAAATGA+AGG | + | chr3.2:59435918-59435937 | None:intergenic | 40.0% | |
| GAAAATGAAGGGGATGGTAA+TGG | + | chr3.2:59435906-59435925 | None:intergenic | 40.0% | |
| GAAACCCCACAAAAAGCTAA+AGG | + | chr3.2:59434849-59434868 | None:intergenic | 40.0% | |
| GATCGGTGGAATTCTTTCAT+GGG | - | chr3.2:59435253-59435272 | MS.gene049642:CDS | 40.0% | |
| GCCAATGATGTTAAGAGTCT+TGG | - | chr3.2:59434410-59434429 | MS.gene049642:CDS | 40.0% | |
| GTATTCTCCTGTCTGGTAAA+AGG | + | chr3.2:59434109-59434128 | None:intergenic | 40.0% | |
| GTTCTTGGCACAACTCTTAT+AGG | - | chr3.2:59435704-59435723 | MS.gene049642:intron | 40.0% | |
| TAGCCATGTTTCGATAAACG+AGG | + | chr3.2:59436330-59436349 | None:intergenic | 40.0% | |
| TATTCCTGTTCCTATGGCTA+TGG | - | chr3.2:59436474-59436493 | MS.gene049642:CDS | 40.0% | |
| TCAAAGATCAAATCCCCTCA+TGG | - | chr3.2:59435840-59435859 | MS.gene049642:intron | 40.0% | |
| TCCATCTCCACATATCAAAC+CGG | + | chr3.2:59436620-59436639 | None:intergenic | 40.0% | |
| TCTGTGGAAAAAGGGTTTGA+AGG | - | chr3.2:59433875-59433894 | MS.gene049642:CDS | 40.0% | |
| TGATCGGTGGAATTCTTTCA+TGG | - | chr3.2:59435252-59435271 | MS.gene049642:CDS | 40.0% | |
| TGGCTATTCTACAACGCTTT+CGG | - | chr3.2:59436262-59436281 | MS.gene049642:intron | 40.0% | |
| TGGCTCACAAACATGGATTT+CGG | + | chr3.2:59436196-59436215 | None:intergenic | 40.0% | |
| TGTAATACCACTTTAGCTGG+TGG | + | chr3.2:59435928-59435947 | None:intergenic | 40.0% | |
| TTAGCTGGTGGAAAATGAAG+GGG | + | chr3.2:59435916-59435935 | None:intergenic | 40.0% | |
| TTCAGTGCTAGTGATGATTG+TGG | - | chr3.2:59434881-59434900 | MS.gene049642:intron | 40.0% | |
| TTTGCAAACTTCCCCACATT+TGG | - | chr3.2:59434905-59434924 | MS.gene049642:intron | 40.0% | |
| ! | AATGTTTCTGCTGGGTTGTT+AGG | - | chr3.2:59434025-59434044 | MS.gene049642:CDS | 40.0% |
| ! | ACAACCATAGGCATTGCAAA+AGG | + | chr3.2:59435984-59436003 | None:intergenic | 40.0% |
| ! | ATGTTTCTGCTGGGTTGTTA+GGG | - | chr3.2:59434026-59434045 | MS.gene049642:CDS | 40.0% |
| ! | ATTTTCCGTAAGTCGATGCA+AGG | + | chr3.2:59436024-59436043 | None:intergenic | 40.0% |
| ! | CACTAGCACTGAAAAACCAT+TGG | + | chr3.2:59434874-59434893 | None:intergenic | 40.0% |
| ! | CTTCGTTGAATGTTTCTGCT+GGG | - | chr3.2:59434017-59434036 | MS.gene049642:CDS | 40.0% |
| ! | CTTTCTTGGTCTCTTTTCAG+TGG | - | chr3.2:59434469-59434488 | MS.gene049642:CDS | 40.0% |
| ! | GGTGATGGTCTATACAACTT+TGG | - | chr3.2:59435677-59435696 | MS.gene049642:CDS | 40.0% |
| ! | GTTGATAAGATGAGCTGTTG+CGG | + | chr3.2:59434759-59434778 | None:intergenic | 40.0% |
| ! | TCATTTTCCACCAGCTAAAG+TGG | - | chr3.2:59435918-59435937 | MS.gene049642:intron | 40.0% |
| ! | TGTCGTCGAATGAAAGTGTA+GGG | + | chr3.2:59435799-59435818 | None:intergenic | 40.0% |
| ! | TTGTCGTCGAATGAAAGTGT+AGG | + | chr3.2:59435800-59435819 | None:intergenic | 40.0% |
| ! | TTTTCCGTAAGTCGATGCAA+GGG | + | chr3.2:59436023-59436042 | None:intergenic | 40.0% |
| ! | TTTTGCAATGCCTATGGTTG+TGG | - | chr3.2:59435983-59436002 | MS.gene049642:intron | 40.0% |
| ! | TTTTGTGGGGTTTCTTCCAA+TGG | - | chr3.2:59434855-59434874 | MS.gene049642:CDS | 40.0% |
| ! | TTTTTCTGCAACCTATGTGG+GGG | - | chr3.2:59435190-59435209 | MS.gene049642:CDS | 40.0% |
| !! | CCTGTCATTGGTGCTAAAAA+AGG | - | chr3.2:59435287-59435306 | MS.gene049642:CDS | 40.0% |
| !! | CTTGATTTGCTTGCTTGTGT+AGG | - | chr3.2:59434329-59434348 | MS.gene049642:CDS | 40.0% |
| !! | TGCTTTGTTTGAGATCAGCA+GGG | + | chr3.2:59435322-59435341 | None:intergenic | 40.0% |
| !!! | CCTTTTTTAGCACCAATGAC+AGG | + | chr3.2:59435290-59435309 | None:intergenic | 40.0% |
| AAACTTCCCCACATTTGGTC+TGG | - | chr3.2:59434910-59434929 | MS.gene049642:intron | 45.0% | |
| AAGGAACATCTGTTCCTACG+TGG | - | chr3.2:59433894-59433913 | MS.gene049642:CDS | 45.0% | |
| AATGGTGTTCGCGACTATGT+CGG | - | chr3.2:59436433-59436452 | MS.gene049642:CDS | 45.0% | |
| ACAACTTGAGGAGATCTCTG+TGG | - | chr3.2:59433859-59433878 | MS.gene049642:CDS | 45.0% | |
| ACCAAGTTGCTTGAGAAAGC+TGG | - | chr3.2:59434070-59434089 | MS.gene049642:CDS | 45.0% | |
| ACCAGCTTTCTCAAGCAACT+TGG | + | chr3.2:59434074-59434093 | None:intergenic | 45.0% | |
| AGCAGCTTACATGGTCTTCA+AGG | - | chr3.2:59435338-59435357 | MS.gene049642:CDS | 45.0% | |
| AGGGTTAAGGCTGATGCATT+TGG | - | chr3.2:59436580-59436599 | MS.gene049642:CDS | 45.0% | |
| AGTTGCTTGAGAAAGCTGGT+TGG | - | chr3.2:59434074-59434093 | MS.gene049642:CDS | 45.0% | |
| ATAGCCATAGCCATAGGAAC+AGG | + | chr3.2:59436481-59436500 | None:intergenic | 45.0% | |
| ATAGGCTTCCAGACCAAATG+TGG | + | chr3.2:59434921-59434940 | None:intergenic | 45.0% | |
| ATCCGTTAGTCCACAACCAT+AGG | + | chr3.2:59435996-59436015 | None:intergenic | 45.0% | |
| ATGGCTATACTAGGTGTGGA+CGG | - | chr3.2:59436343-59436362 | MS.gene049642:intron | 45.0% | |
| CCAGCAGAAACATTCAACGA+AGG | + | chr3.2:59434019-59434038 | None:intergenic | 45.0% | |
| GAGGAGATCTCTGTGGAAAA+AGG | - | chr3.2:59433866-59433885 | MS.gene049642:CDS | 45.0% | |
| GCAAGAGCAAGAAAAGAGCT+AGG | + | chr3.2:59436655-59436674 | None:intergenic | 45.0% | |
| GCAGAAACAGGTTACGGTTA+GGG | - | chr3.2:59433916-59433935 | MS.gene049642:CDS | 45.0% | |
| GCTAGTGGAATTGCATTCAG+CGG | - | chr3.2:59434154-59434173 | MS.gene049642:CDS | 45.0% | |
| GTCAAGAGCAGCAAATGCTA+AGG | - | chr3.2:59436708-59436727 | MS.gene049642:CDS | 45.0% | |
| GTTTGGCACCTTCTGATGTA+TGG | + | chr3.2:59434787-59434806 | None:intergenic | 45.0% | |
| TACAACGCTTTCGGTACTCT+TGG | - | chr3.2:59436271-59436290 | MS.gene049642:intron | 45.0% | |
| TACGTGGCAGAAACAGGTTA+CGG | - | chr3.2:59433910-59433929 | MS.gene049642:CDS | 45.0% | |
| TAGGCTTCCAGACCAAATGT+GGG | + | chr3.2:59434920-59434939 | None:intergenic | 45.0% | |
| TAGTACTGTACCTTTCGGAG+TGG | + | chr3.2:59434497-59434516 | None:intergenic | 45.0% | |
| ! | AATGAAAGTGTAGGGGAGAG+AGG | + | chr3.2:59435791-59435810 | None:intergenic | 45.0% |
| ! | ACTTGTGTTGTTGCTGCTAG+TGG | - | chr3.2:59434139-59434158 | MS.gene049642:CDS | 45.0% |
| ! | AGCTCTTTTCTTGCTCTTGC+TGG | - | chr3.2:59436655-59436674 | MS.gene049642:CDS | 45.0% |
| ! | ATGGTTGTGGACTAACGGAT+TGG | - | chr3.2:59435996-59436015 | MS.gene049642:intron | 45.0% |
| ! | CATCTTCGCTATTGGTGCTT+GGG | - | chr3.2:59436048-59436067 | MS.gene049642:CDS | 45.0% |
| ! | CCTTCGTTGAATGTTTCTGC+TGG | - | chr3.2:59434016-59434035 | MS.gene049642:CDS | 45.0% |
| ! | GATTTGCTTGCTTGTGTAGG+TGG | - | chr3.2:59434332-59434351 | MS.gene049642:CDS | 45.0% |
| ! | GGGTTTGGTAGCTACTTGTT+TGG | - | chr3.2:59434353-59434372 | MS.gene049642:CDS | 45.0% |
| ! | GTCGTCGAATGAAAGTGTAG+GGG | + | chr3.2:59435798-59435817 | None:intergenic | 45.0% |
| ! | TCCGGTTTGATATGTGGAGA+TGG | - | chr3.2:59436616-59436635 | MS.gene049642:CDS | 45.0% |
| ! | TGCCTATGGTTGTGGACTAA+CGG | - | chr3.2:59435991-59436010 | MS.gene049642:intron | 45.0% |
| ! | TTCTTTCATGGGGTGTCATG+TGG | - | chr3.2:59435264-59435283 | MS.gene049642:CDS | 45.0% |
| !! | CTAGCCTTTTGCAATGCCTA+TGG | - | chr3.2:59435977-59435996 | MS.gene049642:intron | 45.0% |
| !! | CTGCTTTGTTTGAGATCAGC+AGG | + | chr3.2:59435323-59435342 | None:intergenic | 45.0% |
| !! | GAGAGGAGCATTTGGATCAT+CGG | + | chr3.2:59435774-59435793 | None:intergenic | 45.0% |
| !! | GCAGAAGGTTGATAGGGTTA+AGG | - | chr3.2:59436567-59436586 | MS.gene049642:CDS | 45.0% |
| !! | GCCGGTGCCATGATTATTAA+TGG | - | chr3.2:59436415-59436434 | MS.gene049642:CDS | 45.0% |
| !! | TTTCGATAAACGAGGGCGTT+AGG | + | chr3.2:59436322-59436341 | None:intergenic | 45.0% |
| !! | TTCATTAATTAATAAAATAA+AGG | + | chr3.2:59434964-59434983 | None:intergenic | 5.0% |
| !!! | TTTTTATTTATTTAAATTGT+AGG | - | chr3.2:59435393-59435412 | MS.gene049642:intron | 5.0% |
| AGGCTTCCAGACCAAATGTG+GGG | + | chr3.2:59434919-59434938 | None:intergenic | 50.0% | |
| CCAAGCACCAATAGCGAAGA+TGG | + | chr3.2:59436050-59436069 | None:intergenic | 50.0% | |
| CCTGCAATTGCGAACCATGA+GGG | + | chr3.2:59435857-59435876 | None:intergenic | 50.0% | |
| CGCCCTCGTTTATCGAAACA+TGG | - | chr3.2:59436324-59436343 | MS.gene049642:intron | 50.0% | |
| CTGCAATTGCGAACCATGAG+GGG | + | chr3.2:59435856-59435875 | None:intergenic | 50.0% | |
| CTGGTGGAAAATGAAGGGGA+TGG | + | chr3.2:59435912-59435931 | None:intergenic | 50.0% | |
| GACACCACATGCTGCTAAAC+CGG | + | chr3.2:59436101-59436120 | None:intergenic | 50.0% | |
| GCATTGCAAAAGGCTAGTGC+AGG | + | chr3.2:59435974-59435993 | None:intergenic | 50.0% | |
| GGCAGAAACAGGTTACGGTT+AGG | - | chr3.2:59433915-59433934 | MS.gene049642:CDS | 50.0% | |
| TATCATCCCAACCCCCACAT+AGG | + | chr3.2:59435204-59435223 | None:intergenic | 50.0% | |
| TGTTCCTACGTGGCAGAAAC+AGG | - | chr3.2:59433904-59433923 | MS.gene049642:CDS | 50.0% | |
| TTCAGTGGTTCCACTCCGAA+AGG | - | chr3.2:59434484-59434503 | MS.gene049642:CDS | 50.0% | |
| TTCGGTACTCTTGGTCAACC+TGG | - | chr3.2:59436280-59436299 | MS.gene049642:intron | 50.0% | |
| TTTGGATCAGCTGTTGCGTC+CGG | - | chr3.2:59436598-59436617 | MS.gene049642:CDS | 50.0% | |
| ! | CCATCTTCGCTATTGGTGCT+TGG | - | chr3.2:59436047-59436066 | MS.gene049642:CDS | 50.0% |
| ! | CTTGCTTGTGTAGGTGGGTT+TGG | - | chr3.2:59434338-59434357 | MS.gene049642:CDS | 50.0% |
| ! | GTTGCGTCCGGTTTGATATG+TGG | - | chr3.2:59436610-59436629 | MS.gene049642:CDS | 50.0% |
| !! | GTAACCTGTTTCTGCCACGT+AGG | + | chr3.2:59433911-59433930 | None:intergenic | 50.0% |
| !! | TGGTCCCTTGCATCGACTTA+CGG | - | chr3.2:59436016-59436035 | MS.gene049642:intron | 50.0% |
| CACATGCTGCTAAACCGGCT+AGG | + | chr3.2:59436096-59436115 | None:intergenic | 55.0% | |
| CCCTATGACGTCGAAAGCCA+CGG | - | chr3.2:59433803-59433822 | MS.gene049642:CDS | 55.0% | |
| CCCTCATGGTTCGCAATTGC+AGG | - | chr3.2:59435854-59435873 | MS.gene049642:intron | 55.0% | |
| CCGTGGCTTTCGACGTCATA+GGG | + | chr3.2:59433806-59433825 | None:intergenic | 55.0% | |
| CTGCAACCTATGTGGGGGTT+GGG | - | chr3.2:59435195-59435214 | MS.gene049642:CDS | 55.0% | |
| GCCTGCAATTGCGAACCATG+AGG | + | chr3.2:59435858-59435877 | None:intergenic | 55.0% | |
| TCTGCAACCTATGTGGGGGT+TGG | - | chr3.2:59435194-59435213 | MS.gene049642:CDS | 55.0% | |
| TGAGCTGTTGCGGTACCACT+TGG | + | chr3.2:59434749-59434768 | None:intergenic | 55.0% | |
| ! | CTAGCCGGTTTAGCAGCATG+TGG | - | chr3.2:59436094-59436113 | MS.gene049642:CDS | 55.0% |
| ! | CTTTGCGGCGTGTTTTTCGC+CGG | - | chr3.2:59436397-59436416 | MS.gene049642:CDS | 55.0% |
| ! | GGTGTCATGTGGCCTGTCAT+TGG | - | chr3.2:59435275-59435294 | MS.gene049642:CDS | 55.0% |
| ! | TTCGCTATTGGTGCTTGGGC+AGG | - | chr3.2:59436052-59436071 | MS.gene049642:CDS | 55.0% |
| !! | AAACGAGGGCGTTAGGTGCA+GGG | + | chr3.2:59436315-59436334 | None:intergenic | 55.0% |
| !! | GTAGGGGAGAGAGGAGCATT+TGG | + | chr3.2:59435782-59435801 | None:intergenic | 55.0% |
| !! | TAAACGAGGGCGTTAGGTGC+AGG | + | chr3.2:59436316-59436335 | None:intergenic | 55.0% |
| GCCGTGGCTTTCGACGTCAT+AGG | + | chr3.2:59433807-59433826 | None:intergenic | 60.0% | |
| GCTTGGGCAGGTGCGTCTAA+CGG | - | chr3.2:59436064-59436083 | MS.gene049642:CDS | 60.0% | |
| GGTGCAGGGTATGGTGAACC+AGG | + | chr3.2:59436301-59436320 | None:intergenic | 60.0% | |
| TCTAACGGCGGTGTCCTAGC+CGG | - | chr3.2:59436079-59436098 | MS.gene049642:CDS | 60.0% | |
| TGACGTCGAAAGCCACGGCA+TGG | - | chr3.2:59433808-59433827 | MS.gene049642:CDS | 60.0% | |
| ! | AGGGCGTTAGGTGCAGGGTA+TGG | + | chr3.2:59436310-59436329 | None:intergenic | 60.0% |
| CGAAAGCCACGGCATGGCTG+CGG | - | chr3.2:59433814-59433833 | MS.gene049642:CDS | 65.0% | |
| TGGGCAGGTGCGTCTAACGG+CGG | - | chr3.2:59436067-59436086 | MS.gene049642:CDS | 65.0% | |
| CGGCATGGCTGCGGTTGCAC+CGG | - | chr3.2:59433823-59433842 | MS.gene049642:CDS | 70.0% | |
| GTGCAACCGCAGCCATGCCG+TGG | + | chr3.2:59433823-59433842 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 59433791 | 59436753 | 59433791 | ID=MS.gene049642 |
| chr3.2 | mRNA | 59433791 | 59436753 | 59433791 | ID=MS.gene049642.t1;Parent=MS.gene049642 |
| chr3.2 | exon | 59436369 | 59436753 | 59436369 | ID=MS.gene049642.t1.exon1;Parent=MS.gene049642.t1 |
| chr3.2 | CDS | 59436369 | 59436753 | 59436369 | ID=cds.MS.gene049642.t1;Parent=MS.gene049642.t1 |
| chr3.2 | exon | 59436039 | 59436193 | 59436039 | ID=MS.gene049642.t1.exon2;Parent=MS.gene049642.t1 |
| chr3.2 | CDS | 59436039 | 59436193 | 59436039 | ID=cds.MS.gene049642.t1;Parent=MS.gene049642.t1 |
| chr3.2 | exon | 59435747 | 59435828 | 59435747 | ID=MS.gene049642.t1.exon3;Parent=MS.gene049642.t1 |
| chr3.2 | CDS | 59435747 | 59435828 | 59435747 | ID=cds.MS.gene049642.t1;Parent=MS.gene049642.t1 |
| chr3.2 | exon | 59435596 | 59435716 | 59435596 | ID=MS.gene049642.t1.exon4;Parent=MS.gene049642.t1 |
| chr3.2 | CDS | 59435596 | 59435716 | 59435596 | ID=cds.MS.gene049642.t1;Parent=MS.gene049642.t1 |
| chr3.2 | exon | 59435177 | 59435366 | 59435177 | ID=MS.gene049642.t1.exon5;Parent=MS.gene049642.t1 |
| chr3.2 | CDS | 59435177 | 59435366 | 59435177 | ID=cds.MS.gene049642.t1;Parent=MS.gene049642.t1 |
| chr3.2 | exon | 59433791 | 59434894 | 59433791 | ID=MS.gene049642.t1.exon6;Parent=MS.gene049642.t1 |
| chr3.2 | CDS | 59433791 | 59434894 | 59433791 | ID=cds.MS.gene049642.t1;Parent=MS.gene049642.t1 |
| Gene Sequence |
| Protein sequence |
