Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049646.t1 | RHN68031.1 | 89.9 | 691 | 56 | 3 | 1 | 678 | 1 | 690 | 0.00E+00 | 1227.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049646.t1 | Q9SHY2 | 76.2 | 667 | 140 | 6 | 26 | 676 | 22 | 685 | 1.6e-296 | 1019.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049646.t1 | A0A396ITK6 | 89.9 | 691 | 56 | 3 | 1 | 678 | 1 | 690 | 0.0e+00 | 1227.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37726 | MS.gene049646 | PPI |
| MS.gene05216 | MS.gene049646 | PPI |
| MS.gene57831 | MS.gene049646 | PPI |
| MS.gene45566 | MS.gene049646 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049646.t1 | MTR_5g091600 | 87.879 | 693 | 58 | 5 | 1 | 678 | 1 | 682 | 0.0 | 1194 |
| MS.gene049646.t1 | MTR_3g063520 | 89.725 | 691 | 57 | 3 | 1 | 678 | 1 | 690 | 0.0 | 1176 |
| MS.gene049646.t1 | MTR_3g063490 | 84.029 | 695 | 91 | 4 | 1 | 676 | 1 | 694 | 0.0 | 1155 |
| MS.gene049646.t1 | MTR_6g077870 | 72.139 | 664 | 173 | 3 | 26 | 678 | 50 | 712 | 0.0 | 994 |
| MS.gene049646.t1 | MTR_6g077870 | 70.833 | 552 | 149 | 3 | 138 | 678 | 1 | 551 | 0.0 | 814 |
| MS.gene049646.t1 | MTR_7g028250 | 57.489 | 661 | 245 | 9 | 34 | 669 | 30 | 679 | 0.0 | 764 |
| MS.gene049646.t1 | MTR_3g092090 | 54.697 | 660 | 275 | 6 | 20 | 663 | 12 | 663 | 0.0 | 737 |
| MS.gene049646.t1 | MTR_3g092090 | 53.523 | 667 | 274 | 7 | 2 | 652 | 6 | 652 | 0.0 | 720 |
| MS.gene049646.t1 | MTR_1g007580 | 51.407 | 675 | 295 | 9 | 19 | 666 | 4 | 672 | 0.0 | 702 |
| MS.gene049646.t1 | MTR_0312s0020 | 51.131 | 663 | 301 | 7 | 20 | 666 | 17 | 672 | 0.0 | 699 |
| MS.gene049646.t1 | MTR_1g007540 | 51.131 | 663 | 301 | 7 | 20 | 666 | 17 | 672 | 0.0 | 699 |
| MS.gene049646.t1 | MTR_1g077840 | 50.453 | 662 | 305 | 7 | 20 | 665 | 25 | 679 | 0.0 | 698 |
| MS.gene049646.t1 | MTR_5g091615 | 88.125 | 160 | 19 | 0 | 515 | 674 | 59 | 218 | 1.96e-89 | 281 |
| MS.gene049646.t1 | MTR_1626s0010 | 50.847 | 236 | 112 | 2 | 207 | 442 | 4 | 235 | 1.45e-80 | 256 |
| MS.gene049646.t1 | MTR_0312s0050 | 49.593 | 123 | 51 | 3 | 16 | 127 | 1 | 123 | 4.63e-32 | 120 |
| MS.gene049646.t1 | MTR_2g083230 | 82.609 | 46 | 5 | 1 | 129 | 171 | 34 | 79 | 4.76e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049646.t1 | AT1G65730 | 75.893 | 672 | 141 | 7 | 21 | 676 | 19 | 685 | 0.0 | 1036 |
| MS.gene049646.t1 | AT3G17650 | 71.429 | 665 | 173 | 4 | 29 | 676 | 46 | 710 | 0.0 | 949 |
| MS.gene049646.t1 | AT3G17650 | 71.429 | 665 | 173 | 4 | 29 | 676 | 46 | 710 | 0.0 | 949 |
| MS.gene049646.t1 | AT1G48370 | 70.871 | 666 | 176 | 4 | 29 | 676 | 55 | 720 | 0.0 | 931 |
| MS.gene049646.t1 | AT3G27020 | 57.357 | 666 | 263 | 6 | 23 | 669 | 13 | 676 | 0.0 | 768 |
| MS.gene049646.t1 | AT1G48370 | 69.479 | 557 | 152 | 4 | 138 | 676 | 1 | 557 | 0.0 | 756 |
| MS.gene049646.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 743 |
| MS.gene049646.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 743 |
| MS.gene049646.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 743 |
| MS.gene049646.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 743 |
| MS.gene049646.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 743 |
| MS.gene049646.t1 | AT5G41000 | 54.799 | 646 | 273 | 5 | 35 | 663 | 24 | 667 | 0.0 | 727 |
| MS.gene049646.t1 | AT4G24120 | 52.941 | 680 | 289 | 7 | 1 | 665 | 9 | 672 | 0.0 | 724 |
| MS.gene049646.t1 | AT5G24380 | 52.959 | 659 | 288 | 6 | 22 | 663 | 7 | 660 | 0.0 | 712 |
| MS.gene049646.t1 | AT5G41000 | 52.632 | 646 | 262 | 6 | 35 | 663 | 24 | 642 | 0.0 | 686 |
| MS.gene049646.t1 | AT5G53550 | 58.058 | 515 | 198 | 4 | 160 | 664 | 1 | 507 | 0.0 | 602 |
| MS.gene049646.t1 | AT5G41000 | 53.955 | 493 | 214 | 4 | 182 | 663 | 1 | 491 | 0.0 | 553 |
| MS.gene049646.t1 | AT5G45450 | 65.138 | 218 | 70 | 1 | 459 | 676 | 1 | 212 | 1.71e-95 | 294 |
Find 160 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTTGTTGTTAGCTTTCT+TGG | 0.055871 | 3.2:-59471624 | MS.gene049646:CDS |
| AATGTTTCTGCTGGGTTGTT+AGG | 0.216597 | 3.2:-59472054 | MS.gene049646:CDS |
| GAAGCTTGATATTGTTTATT+TGG | 0.238786 | 3.2:-59469534 | MS.gene049646:CDS |
| GTTCTTGGCACAACTCTTAT+AGG | 0.241739 | 3.2:-59470375 | MS.gene049646:CDS |
| GCTAAGGTTGATAAGTTCTT+AGG | 0.244541 | 3.2:-59469355 | MS.gene049646:CDS |
| GAGGAGATCTCTGTGGAAAA+AGG | 0.248700 | 3.2:-59472213 | MS.gene049646:CDS |
| ATGTTTGTGAGCCAAGTTAT+TGG | 0.272519 | 3.2:-59469877 | MS.gene049646:CDS |
| GCCGGTGCCATGATTATTAA+TGG | 0.276061 | 3.2:-59469664 | MS.gene049646:CDS |
| TACAACTTTGGGAAAGTTCT+TGG | 0.281237 | 3.2:-59470390 | MS.gene049646:CDS |
| TGATATGTGGAGATGGAATT+TGG | 0.283833 | 3.2:-59469456 | MS.gene049646:CDS |
| AACGAAATATTGGTTATATA+TGG | 0.289135 | 3.2:+59470852 | None:intergenic |
| ACCGATCAACAACGAAATAT+TGG | 0.300050 | 3.2:+59470842 | None:intergenic |
| CCCTCATGGTTCGCAATTGC+AGG | 0.302996 | 3.2:-59470225 | MS.gene049646:CDS |
| GTATTCTCCTGTCTGGTAAA+AGG | 0.329015 | 3.2:+59471973 | None:intergenic |
| CCTTCGTTGAATGTTTCTGC+TGG | 0.339721 | 3.2:-59472063 | MS.gene049646:CDS |
| AAATTAGCCATCTTCGCTAT+TGG | 0.346002 | 3.2:-59470039 | MS.gene049646:CDS |
| TGATCGGTGGAATTCTTTCA+TGG | 0.350906 | 3.2:-59470827 | MS.gene049646:CDS |
| CCATCTTCGCTATTGGTGCT+TGG | 0.352652 | 3.2:-59470032 | MS.gene049646:CDS |
| TTATTTGGCAGAAGGTTGAT+AGG | 0.352931 | 3.2:-59469519 | MS.gene049646:CDS |
| AAGTAGCTTCCAATGTAAAA+TGG | 0.358086 | 3.2:+59469577 | None:intergenic |
| ATAGGCATAGCAATGATTCT+TGG | 0.363000 | 3.2:-59470423 | MS.gene049646:CDS |
| TTTGCAAACTTCCCCACATT+TGG | 0.363476 | 3.2:-59471174 | MS.gene049646:CDS |
| AGGGTTAAGGCTGATGCATT+TGG | 0.365863 | 3.2:-59469499 | MS.gene049646:CDS |
| TAGGTTTGTATAAACAATTA+TGG | 0.370836 | 3.2:-59470356 | MS.gene049646:CDS |
| GGGTTTGGTAGCTACTTGTT+TGG | 0.371080 | 3.2:-59471726 | MS.gene049646:CDS |
| GACAAGAATTTCATGCAAAT+AGG | 0.377015 | 3.2:+59469391 | None:intergenic |
| TGGCTATTCTACAACGCTTT+CGG | 0.377582 | 3.2:-59469817 | MS.gene049646:CDS |
| GTAGGGGAGAGAGGAGCATT+TGG | 0.378591 | 3.2:+59470300 | None:intergenic |
| GACACCACATGCTGCTAAAC+CGG | 0.383267 | 3.2:+59469981 | None:intergenic |
| TGGCTCACAAACATGGATTT+CGG | 0.390640 | 3.2:+59469886 | None:intergenic |
| GCCAATGATGTTAAGAGTCT+TGG | 0.398551 | 3.2:-59471669 | MS.gene049646:CDS |
| GTGATGGTCTATACAACTTT+GGG | 0.399347 | 3.2:-59470401 | MS.gene049646:CDS |
| CTTGCTTGTGTAGGTGGGTT+TGG | 0.399991 | 3.2:-59471741 | MS.gene049646:intron |
| GGTGATGGTCTATACAACTT+TGG | 0.401168 | 3.2:-59470402 | MS.gene049646:CDS |
| GTTTGGCACCTTCTGATGTA+TGG | 0.401190 | 3.2:+59471295 | None:intergenic |
| ATGAAGTTGAATCTCACAAC+TGG | 0.401497 | 3.2:-59472093 | MS.gene049646:CDS |
| TTCGCTATTGGTGCTTGGGC+AGG | 0.404021 | 3.2:-59470027 | MS.gene049646:CDS |
| TTTCGATAAACGAGGGCGTT+AGG | 0.407080 | 3.2:+59469760 | None:intergenic |
| TGTTCCTACGTGGCAGAAAC+AGG | 0.407557 | 3.2:-59472175 | MS.gene049646:CDS |
| CTGCTTTGTTTGAGATCAGC+AGG | 0.407652 | 3.2:+59470759 | None:intergenic |
| CATCTTCGCTATTGGTGCTT+GGG | 0.418097 | 3.2:-59470031 | MS.gene049646:CDS |
| GATGTTAAGAGTCTTGGTTT+AGG | 0.418370 | 3.2:-59471663 | MS.gene049646:CDS |
| GCAGAAGGTTGATAGGGTTA+AGG | 0.423744 | 3.2:-59469512 | MS.gene049646:CDS |
| CTTATGCAAGACTTCAAAAC+AGG | 0.423970 | 3.2:-59469928 | MS.gene049646:CDS |
| GGCAGAAACAGGTTACGGTT+AGG | 0.425396 | 3.2:-59472164 | MS.gene049646:CDS |
| TAAACGAGGGCGTTAGGTGC+AGG | 0.426821 | 3.2:+59469766 | None:intergenic |
| CGGCATGGCTGCGGTTGCAC+CGG | 0.427222 | 3.2:-59472256 | MS.gene049646:CDS |
| TGGTCCCTTGCATCGACTTA+CGG | 0.438370 | 3.2:-59470063 | MS.gene049646:CDS |
| ATGAGGGGATTTGATCTTTG+AGG | 0.439237 | 3.2:+59470241 | None:intergenic |
| GCAGAAACAGGTTACGGTTA+GGG | 0.440923 | 3.2:-59472163 | MS.gene049646:CDS |
| ACCAAGACTCTTAACATCAT+TGG | 0.446254 | 3.2:+59471668 | None:intergenic |
| ATGTTTCTGCTGGGTTGTTA+GGG | 0.449011 | 3.2:-59472053 | MS.gene049646:CDS |
| CCATAGCAGTTCCAATAACT+TGG | 0.450305 | 3.2:+59469866 | None:intergenic |
| TTCGGTACTCTTGGTCAACC+TGG | 0.450819 | 3.2:-59469799 | MS.gene049646:CDS |
| GATCGGTGGAATTCTTTCAT+GGG | 0.451529 | 3.2:-59470826 | MS.gene049646:CDS |
| TTTGGATCAGCTGTTGCGTC+CGG | 0.451755 | 3.2:-59469481 | MS.gene049646:CDS |
| ACTTGTGTTGTTGCTGCTAG+TGG | 0.451917 | 3.2:-59471940 | MS.gene049646:CDS |
| CAACTATATTCCTGTTCCTA+TGG | 0.451960 | 3.2:-59469611 | MS.gene049646:CDS |
| GGTGTCATGTGGCCTCTCAT+TGG | 0.456041 | 3.2:-59470804 | MS.gene049646:CDS |
| TTAAGAGTCTTGGTTTAGGA+TGG | 0.456468 | 3.2:-59471659 | MS.gene049646:CDS |
| TATCGAAACATGGCTATACT+AGG | 0.461201 | 3.2:-59469745 | MS.gene049646:CDS |
| AGCAGCTTACATGGTCTTCA+AGG | 0.462139 | 3.2:-59470741 | MS.gene049646:CDS |
| CCAAGCACCAATAGCGAAGA+TGG | 0.462172 | 3.2:+59470032 | None:intergenic |
| ACCAGCTTTCTCAAGCAACT+TGG | 0.467323 | 3.2:+59472008 | None:intergenic |
| CCAAGTTATTGGAACTGCTA+TGG | 0.469421 | 3.2:-59469866 | MS.gene049646:CDS |
| CTTCGTTGAATGTTTCTGCT+GGG | 0.472472 | 3.2:-59472062 | MS.gene049646:CDS |
| CTCAAACAAAGCAGCTTACA+TGG | 0.473967 | 3.2:-59470750 | MS.gene049646:CDS |
| ACCAATATTTCGTTGTTGAT+CGG | 0.478557 | 3.2:-59470843 | MS.gene049646:CDS |
| GCCGTGGCTTTCGACGTCAT+AGG | 0.479696 | 3.2:+59472275 | None:intergenic |
| TACAACGCTTTCGGTACTCT+TGG | 0.482640 | 3.2:-59469808 | MS.gene049646:CDS |
| CTTTAGCTGGTGGAAAATGA+AGG | 0.487926 | 3.2:+59470164 | None:intergenic |
| AAACTTCCCCACATTTGGTC+TGG | 0.492239 | 3.2:-59471169 | MS.gene049646:CDS |
| TGATGTAATACCACTTTAGC+TGG | 0.492701 | 3.2:+59470151 | None:intergenic |
| CCAAATATTGCAAAACAAGC+TGG | 0.494078 | 3.2:-59471696 | MS.gene049646:CDS |
| CAAGTTATTGGAACTGCTAT+GGG | 0.494211 | 3.2:-59469865 | MS.gene049646:CDS |
| GAGAGGAGCATTTGGATCAT+CGG | 0.497596 | 3.2:+59470308 | None:intergenic |
| GCTTGGGCAGGTGCGTCTAA+CGG | 0.499684 | 3.2:-59470015 | MS.gene049646:CDS |
| TTCTTTCATGGGGTGTCATG+TGG | 0.500744 | 3.2:-59470815 | MS.gene049646:CDS |
| TCCATCTCCACATATCAAAC+CGG | 0.501705 | 3.2:+59469462 | None:intergenic |
| ATAGCCATAGCCATAGGAAC+AGG | 0.504745 | 3.2:+59469601 | None:intergenic |
| GATATTGTTTATTTGGCAGA+AGG | 0.507191 | 3.2:-59469527 | MS.gene049646:CDS |
| TTTGCTATTGATATGTGTGT+TGG | 0.507636 | 3.2:-59469556 | MS.gene049646:CDS |
| AATAACAGTATTCTCCTGTC+TGG | 0.507862 | 3.2:+59471966 | None:intergenic |
| CCGTGGCTTTCGACGTCATA+GGG | 0.509154 | 3.2:+59472276 | None:intergenic |
| TATTCCTGTTCCTATGGCTA+TGG | 0.510164 | 3.2:-59469605 | MS.gene049646:CDS |
| CGAAAGCCACGGCATGGCTG+CGG | 0.511258 | 3.2:-59472265 | MS.gene049646:CDS |
| TGTCGTCGAATGAAAGTGTA+GGG | 0.513370 | 3.2:+59470283 | None:intergenic |
| TGAGCTGTTGCGGTACCACT+TGG | 0.516027 | 3.2:+59471333 | None:intergenic |
| TCTAACGGCGGTGTCCTAGC+CGG | 0.520318 | 3.2:-59470000 | MS.gene049646:CDS |
| TATTTGGCAGAAGGTTGATA+GGG | 0.521362 | 3.2:-59469518 | MS.gene049646:CDS |
| GCGAACACCATTAATAATCA+TGG | 0.526943 | 3.2:+59469657 | None:intergenic |
| GAAAATGAAGGGGATGGTAA+TGG | 0.530222 | 3.2:+59470176 | None:intergenic |
| AATAACTTGGCTCACAAACA+TGG | 0.530485 | 3.2:+59469879 | None:intergenic |
| GTTGCGTCCGGTTTGATATG+TGG | 0.530851 | 3.2:-59469469 | MS.gene049646:CDS |
| TTCAGTGGTTCCACTCCGAA+AGG | 0.534003 | 3.2:-59471595 | MS.gene049646:intron |
| AATATTTCGTTGTTGATCGG+TGG | 0.535914 | 3.2:-59470840 | MS.gene049646:CDS |
| CATAGGAACAGGAATATAGT+TGG | 0.536080 | 3.2:+59469612 | None:intergenic |
| TGCCTATGGTTGTGGACTAA+CGG | 0.537350 | 3.2:-59470088 | MS.gene049646:CDS |
| AATGGTGTTCGCGACTATGT+CGG | 0.539051 | 3.2:-59469646 | MS.gene049646:CDS |
| CGCCCTCGTTTATCGAAACA+TGG | 0.542039 | 3.2:-59469755 | MS.gene049646:CDS |
| AATGAAAGTGTAGGGGAGAG+AGG | 0.542386 | 3.2:+59470291 | None:intergenic |
| ACCAAGTTGCTTGAGAAAGC+TGG | 0.544740 | 3.2:-59472009 | MS.gene049646:CDS |
| ACCATTAATAATCATGGCAC+CGG | 0.545307 | 3.2:+59469663 | None:intergenic |
| GTGCAACCGCAGCCATGCCG+TGG | 0.547128 | 3.2:+59472259 | None:intergenic |
| GCATTGCAAAAGGCTAGTGC+AGG | 0.548633 | 3.2:+59470108 | None:intergenic |
| ATAGGCTTCCAGACCAAATG+TGG | 0.549567 | 3.2:+59471161 | None:intergenic |
| TTGATCTTTGAGGAACATCT+CGG | 0.554704 | 3.2:+59470251 | None:intergenic |
| TTCAGTGCTAGTGATGATTG+TGG | 0.556606 | 3.2:-59471198 | MS.gene049646:CDS |
| ATGGTTGTGGACTAACGGAT+TGG | 0.556934 | 3.2:-59470083 | MS.gene049646:CDS |
| ATTTGTGAGTCTCATGTTGT+CGG | 0.557992 | 3.2:-59472136 | MS.gene049646:CDS |
| ACAACCATAGGCATTGCAAA+AGG | 0.564312 | 3.2:+59470098 | None:intergenic |
| AGGGCGTTAGGTGCAGGGTA+TGG | 0.565245 | 3.2:+59469772 | None:intergenic |
| AACAGTTTCCATACATCAGA+AGG | 0.565961 | 3.2:-59471303 | MS.gene049646:intron |
| ATCGGTGGAATTCTTTCATG+GGG | 0.567187 | 3.2:-59470825 | MS.gene049646:CDS |
| AAACGAGGGCGTTAGGTGCA+GGG | 0.569241 | 3.2:+59469767 | None:intergenic |
| TTGTCGTCGAATGAAAGTGT+AGG | 0.575329 | 3.2:+59470282 | None:intergenic |
| GCAAGAGCAAGAAAAGAGCT+AGG | 0.577753 | 3.2:+59469427 | None:intergenic |
| GGTGCAGGGTATGGTGAACC+AGG | 0.579015 | 3.2:+59469781 | None:intergenic |
| CTGCAATTGCGAACCATGAG+GGG | 0.583286 | 3.2:+59470226 | None:intergenic |
| ATCCGTTAGTCCACAACCAT+AGG | 0.586179 | 3.2:+59470086 | None:intergenic |
| TTTAGCTGGTGGAAAATGAA+GGG | 0.586752 | 3.2:+59470165 | None:intergenic |
| CAAAACAGGTTACATGACAA+TGG | 0.590728 | 3.2:-59469914 | MS.gene049646:CDS |
| AAGAATTTCATGCAAATAGG+TGG | 0.591699 | 3.2:+59469394 | None:intergenic |
| GTCAAGAGCAGCAAATGCTA+AGG | 0.594984 | 3.2:-59469371 | MS.gene049646:CDS |
| AATGGTATAGCCATAGCCAT+AGG | 0.595250 | 3.2:+59469595 | None:intergenic |
| CCCTATGACGTCGAAAGCCA+CGG | 0.598986 | 3.2:-59472276 | MS.gene049646:CDS |
| ATAGCAATGATTCTTGGTGA+TGG | 0.599500 | 3.2:-59470417 | MS.gene049646:CDS |
| AAACATGGCTATACTAGGTG+TGG | 0.601524 | 3.2:-59469740 | MS.gene049646:CDS |
| CCTGCAATTGCGAACCATGA+GGG | 0.604092 | 3.2:+59470225 | None:intergenic |
| TCCGGTTTGATATGTGGAGA+TGG | 0.612716 | 3.2:-59469463 | MS.gene049646:CDS |
| TACGTGGCAGAAACAGGTTA+CGG | 0.614426 | 3.2:-59472169 | MS.gene049646:CDS |
| TCAAAGATCAAATCCCCTCA+TGG | 0.616210 | 3.2:-59470239 | MS.gene049646:CDS |
| TGACGTCGAAAGCCACGGCA+TGG | 0.618397 | 3.2:-59472271 | MS.gene049646:CDS |
| AGTTGCTTGAGAAAGCTGGT+TGG | 0.620575 | 3.2:-59472005 | MS.gene049646:CDS |
| CACATGCTGCTAAACCGGCT+AGG | 0.621749 | 3.2:+59469986 | None:intergenic |
| TGCTTTGTTTGAGATCAGCA+GGG | 0.627385 | 3.2:+59470760 | None:intergenic |
| TGTAATACCACTTTAGCTGG+TGG | 0.629875 | 3.2:+59470154 | None:intergenic |
| ATGGCTATACTAGGTGTGGA+CGG | 0.647638 | 3.2:-59469736 | MS.gene049646:CDS |
| TAGGCTTCCAGACCAAATGT+GGG | 0.650528 | 3.2:+59471162 | None:intergenic |
| TTAGCTGGTGGAAAATGAAG+GGG | 0.653662 | 3.2:+59470166 | None:intergenic |
| CTGGTGGAAAATGAAGGGGA+TGG | 0.654258 | 3.2:+59470170 | None:intergenic |
| TGGGCAGGTGCGTCTAACGG+CGG | 0.655359 | 3.2:-59470012 | MS.gene049646:CDS |
| GTTGATAAGATGAGCTGTTG+CGG | 0.660296 | 3.2:+59471323 | None:intergenic |
| AGTTGTTCATCATTCAACAC+CGG | 0.662303 | 3.2:+59472237 | None:intergenic |
| GCCTGCAATTGCGAACCATG+AGG | 0.668031 | 3.2:+59470224 | None:intergenic |
| TAGTACTGTACCTTTCGGAG+TGG | 0.669012 | 3.2:+59471585 | None:intergenic |
| TGAAGTTGAATCTCACAACT+GGG | 0.670966 | 3.2:-59472092 | MS.gene049646:CDS |
| TAGAATAGCCAGAAAACACA+TGG | 0.680447 | 3.2:+59469829 | None:intergenic |
| GTTGAATGATGAACAACTTG+AGG | 0.685365 | 3.2:-59472232 | MS.gene049646:CDS |
| TAGCCATGTTTCGATAAACG+AGG | 0.685399 | 3.2:+59469752 | None:intergenic |
| TTCAAACTGACATATCCAAG+TGG | 0.687798 | 3.2:-59471348 | MS.gene049646:CDS |
| ACAACTTGAGGAGATCTCTG+TGG | 0.691473 | 3.2:-59472220 | MS.gene049646:CDS |
| GCTAGTGGAATTGCATTCAG+CGG | 0.695424 | 3.2:-59471925 | MS.gene049646:intron |
| CTAGCCGGTTTAGCAGCATG+TGG | 0.697720 | 3.2:-59469985 | MS.gene049646:CDS |
| AGCCATGTTTCGATAAACGA+GGG | 0.699106 | 3.2:+59469753 | None:intergenic |
| CCAGCAGAAACATTCAACGA+AGG | 0.700492 | 3.2:+59472063 | None:intergenic |
| AGGCTTCCAGACCAAATGTG+GGG | 0.704515 | 3.2:+59471163 | None:intergenic |
| GTCGTCGAATGAAAGTGTAG+GGG | 0.705258 | 3.2:+59470284 | None:intergenic |
| GTAACCTGTTTCTGCCACGT+AGG | 0.720663 | 3.2:+59472171 | None:intergenic |
| AAGGAACATCTGTTCCTACG+TGG | 0.720715 | 3.2:-59472185 | MS.gene049646:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATGAAAGAATTTAAAA+TGG | - | chr3.2:59470532-59470551 | MS.gene049646:intron | 10.0% |
| !! | AACATCAAATTAAAACTAAA+TGG | + | chr3.2:59470241-59470260 | None:intergenic | 15.0% |
| !! | TATTATTTAATGTACATAAC+AGG | - | chr3.2:59470713-59470732 | MS.gene049646:intron | 15.0% |
| !! | AAAGTATACTTACAAAAAAG+TGG | + | chr3.2:59471004-59471023 | None:intergenic | 20.0% |
| !! | TAAATGTTAGCTAAAAGAAA+AGG | + | chr3.2:59470695-59470714 | None:intergenic | 20.0% |
| !! | TAGGTTTGTATAAACAATTA+TGG | - | chr3.2:59471280-59471299 | MS.gene049646:intron | 20.0% |
| !!! | AACGAAATATTGGTTATATA+TGG | + | chr3.2:59470787-59470806 | None:intergenic | 20.0% |
| !!! | AACTTGTTCTAAAAACTATT+AGG | + | chr3.2:59469796-59469815 | None:intergenic | 20.0% |
| !!! | ACTTGTTCTAAAAACTATTA+GGG | + | chr3.2:59469795-59469814 | None:intergenic | 20.0% |
| !!! | ACTTTTTTGTAAGTATACTT+TGG | - | chr3.2:59471003-59471022 | MS.gene049646:intron | 20.0% |
| !!! | GGGTTAAATTGATTTTATTA+AGG | + | chr3.2:59470101-59470120 | None:intergenic | 20.0% |
| !!! | TGTTTTAAATTGATTGAACA+AGG | + | chr3.2:59470126-59470145 | None:intergenic | 20.0% |
| ! | AGATTTGTCAACAACAAATA+AGG | + | chr3.2:59469862-59469881 | None:intergenic | 25.0% |
| ! | CAACTTAAAACACAGTAAAT+TGG | - | chr3.2:59471063-59471082 | MS.gene049646:intron | 25.0% |
| ! | CAATAGAATACATTATCAAC+CGG | + | chr3.2:59471153-59471172 | None:intergenic | 25.0% |
| ! | GAAGCTTGATATTGTTTATT+TGG | - | chr3.2:59472102-59472121 | MS.gene049646:CDS | 25.0% |
| ! | TAAAACAATTGAACATGACT+TGG | - | chr3.2:59470139-59470158 | MS.gene049646:CDS | 25.0% |
| ! | TTAAATTGATTGAACAAGGA+CGG | + | chr3.2:59470122-59470141 | None:intergenic | 25.0% |
| !!! | TGAATCGATTTTTAAAACGT+GGG | - | chr3.2:59470183-59470202 | MS.gene049646:CDS | 25.0% |
| !!! | TTGAATCGATTTTTAAAACG+TGG | - | chr3.2:59470182-59470201 | MS.gene049646:CDS | 25.0% |
| AAAAACTGCATCATACTTTG+CGG | - | chr3.2:59471939-59471958 | MS.gene049646:CDS | 30.0% | |
| AACAATCATAATCTGCAACA+AGG | + | chr3.2:59470265-59470284 | None:intergenic | 30.0% | |
| AACCTCTATGTTCTCAATTA+TGG | - | chr3.2:59470591-59470610 | MS.gene049646:intron | 30.0% | |
| AAGAATTTCATGCAAATAGG+TGG | + | chr3.2:59472245-59472264 | None:intergenic | 30.0% | |
| AAGTAGCTTCCAATGTAAAA+TGG | + | chr3.2:59472062-59472081 | None:intergenic | 30.0% | |
| ACAAGTACAAAACTGGAATT+TGG | - | chr3.2:59471092-59471111 | MS.gene049646:intron | 30.0% | |
| ACCAATATTTCGTTGTTGAT+CGG | - | chr3.2:59470793-59470812 | MS.gene049646:CDS | 30.0% | |
| AGTCAAGTATTAAACTGAAG+TGG | + | chr3.2:59469749-59469768 | None:intergenic | 30.0% | |
| GACAAGAATTTCATGCAAAT+AGG | + | chr3.2:59472248-59472267 | None:intergenic | 30.0% | |
| GATATTGTTTATTTGGCAGA+AGG | - | chr3.2:59472109-59472128 | MS.gene049646:CDS | 30.0% | |
| GATTGAAACAAGTACAAAAC+TGG | - | chr3.2:59471085-59471104 | MS.gene049646:intron | 30.0% | |
| TAAATTGATTGAACAAGGAC+GGG | + | chr3.2:59470121-59470140 | None:intergenic | 30.0% | |
| TTGTATTCTCTCTAAACTAC+AGG | - | chr3.2:59471185-59471204 | MS.gene049646:CDS | 30.0% | |
| ! | ATGGCTATACCATTTTACAT+TGG | - | chr3.2:59472050-59472069 | MS.gene049646:CDS | 30.0% |
| ! | CAAAGTATGATGCAGTTTTT+CGG | + | chr3.2:59471939-59471958 | None:intergenic | 30.0% |
| ! | TCTAAACTACAGGTTTTCAT+AGG | - | chr3.2:59471195-59471214 | MS.gene049646:CDS | 30.0% |
| ! | TTTGATAGTACTGTACCTTT+CGG | + | chr3.2:59470059-59470078 | None:intergenic | 30.0% |
| !! | CGGTTGATAATGTATTCTAT+TGG | - | chr3.2:59471151-59471170 | MS.gene049646:intron | 30.0% |
| !! | CTATTTGTTGTTAGCTTTCT+TGG | - | chr3.2:59470012-59470031 | MS.gene049646:CDS | 30.0% |
| !! | TTTGCTATTGATATGTGTGT+TGG | - | chr3.2:59472080-59472099 | MS.gene049646:CDS | 30.0% |
| !!! | TAGATCTTTTTCAATGTGAC+CGG | - | chr3.2:59471131-59471150 | MS.gene049646:intron | 30.0% |
| AAATTAGCCATCTTCGCTAT+TGG | - | chr3.2:59471597-59471616 | MS.gene049646:CDS | 35.0% | |
| AACAGTTTCCATACATCAGA+AGG | - | chr3.2:59470333-59470352 | MS.gene049646:CDS | 35.0% | |
| AATAACAGTATTCTCCTGTC+TGG | + | chr3.2:59469673-59469692 | None:intergenic | 35.0% | |
| AATAACTTGGCTCACAAACA+TGG | + | chr3.2:59471760-59471779 | None:intergenic | 35.0% | |
| AATATTTCGTTGTTGATCGG+TGG | - | chr3.2:59470796-59470815 | MS.gene049646:CDS | 35.0% | |
| ACCAAGACTCTTAACATCAT+TGG | + | chr3.2:59469971-59469990 | None:intergenic | 35.0% | |
| ACCATTAATAATCATGGCAC+CGG | + | chr3.2:59471976-59471995 | None:intergenic | 35.0% | |
| ACCGATCAACAACGAAATAT+TGG | + | chr3.2:59470797-59470816 | None:intergenic | 35.0% | |
| AGTTGTTCATCATTCAACAC+CGG | + | chr3.2:59469402-59469421 | None:intergenic | 35.0% | |
| ATAGCAATGATTCTTGGTGA+TGG | - | chr3.2:59471219-59471238 | MS.gene049646:CDS | 35.0% | |
| ATAGGCATAGCAATGATTCT+TGG | - | chr3.2:59471213-59471232 | MS.gene049646:CDS | 35.0% | |
| ATGAAGTTGAATCTCACAAC+TGG | - | chr3.2:59469543-59469562 | MS.gene049646:CDS | 35.0% | |
| ATGTTTGTGAGCCAAGTTAT+TGG | - | chr3.2:59471759-59471778 | MS.gene049646:intron | 35.0% | |
| ATTTGTGAGTCTCATGTTGT+CGG | - | chr3.2:59469500-59469519 | MS.gene049646:CDS | 35.0% | |
| CAAAACAGGTTACATGACAA+TGG | - | chr3.2:59471722-59471741 | MS.gene049646:CDS | 35.0% | |
| CAACTATATTCCTGTTCCTA+TGG | - | chr3.2:59472025-59472044 | MS.gene049646:CDS | 35.0% | |
| CAAGTTATTGGAACTGCTAT+GGG | - | chr3.2:59471771-59471790 | MS.gene049646:intron | 35.0% | |
| CACCATAATTGAGAACATAG+AGG | + | chr3.2:59470596-59470615 | None:intergenic | 35.0% | |
| CATAGGAACAGGAATATAGT+TGG | + | chr3.2:59472027-59472046 | None:intergenic | 35.0% | |
| CCAAATATTGCAAAACAAGC+TGG | - | chr3.2:59469940-59469959 | MS.gene049646:CDS | 35.0% | |
| CTTATGCAAGACTTCAAAAC+AGG | - | chr3.2:59471708-59471727 | MS.gene049646:CDS | 35.0% | |
| GAACATAGAGGTTTCAGTTT+CGG | + | chr3.2:59470584-59470603 | None:intergenic | 35.0% | |
| GATGTTAAGAGTCTTGGTTT+AGG | - | chr3.2:59469973-59469992 | MS.gene049646:CDS | 35.0% | |
| GCGAACACCATTAATAATCA+TGG | + | chr3.2:59471982-59472001 | None:intergenic | 35.0% | |
| GTGATGGTCTATACAACTTT+GGG | - | chr3.2:59471235-59471254 | MS.gene049646:CDS | 35.0% | |
| GTTGAATGATGAACAACTTG+AGG | - | chr3.2:59469404-59469423 | MS.gene049646:CDS | 35.0% | |
| TACTTGCTTCTTTGCTAGTT+TGG | + | chr3.2:59470361-59470380 | None:intergenic | 35.0% | |
| TAGAATAGCCAGAAAACACA+TGG | + | chr3.2:59471810-59471829 | None:intergenic | 35.0% | |
| TATCGAAACATGGCTATACT+AGG | - | chr3.2:59471891-59471910 | MS.gene049646:intron | 35.0% | |
| TGAAGTTGAATCTCACAACT+GGG | - | chr3.2:59469544-59469563 | MS.gene049646:CDS | 35.0% | |
| TGATATGTGGAGATGGAATT+TGG | - | chr3.2:59472180-59472199 | MS.gene049646:CDS | 35.0% | |
| TGATGTAATACCACTTTAGC+TGG | + | chr3.2:59471488-59471507 | None:intergenic | 35.0% | |
| TTAAGAGTCTTGGTTTAGGA+TGG | - | chr3.2:59469977-59469996 | MS.gene049646:CDS | 35.0% | |
| TTCAAACTGACATATCCAAG+TGG | - | chr3.2:59470288-59470307 | MS.gene049646:CDS | 35.0% | |
| TTTAGCTGGTGGAAAATGAA+GGG | + | chr3.2:59471474-59471493 | None:intergenic | 35.0% | |
| ! | ATTTTTCTGCAACCTATGTG+GGG | - | chr3.2:59470746-59470765 | MS.gene049646:CDS | 35.0% |
| ! | GATTTTTCTGCAACCTATGT+GGG | - | chr3.2:59470745-59470764 | MS.gene049646:CDS | 35.0% |
| ! | GGTTTTTCTTTGTGAAGACA+TGG | - | chr3.2:59469604-59469623 | MS.gene049646:CDS | 35.0% |
| ! | TAATCAACCTTTTACCAGAC+AGG | - | chr3.2:59469656-59469675 | MS.gene049646:CDS | 35.0% |
| ! | TACAACTTTGGGAAAGTTCT+TGG | - | chr3.2:59471246-59471265 | MS.gene049646:CDS | 35.0% |
| ! | TGATTTTTCTGCAACCTATG+TGG | - | chr3.2:59470744-59470763 | MS.gene049646:CDS | 35.0% |
| ! | TTATATCGCCATGTGTTTTC+TGG | - | chr3.2:59471799-59471818 | MS.gene049646:intron | 35.0% |
| ! | TTATTTGGCAGAAGGTTGAT+AGG | - | chr3.2:59472117-59472136 | MS.gene049646:CDS | 35.0% |
| ! | TTGATCTTTGAGGAACATCT+CGG | + | chr3.2:59471388-59471407 | None:intergenic | 35.0% |
| !! | AAGAAGCAAGTAAAAGCACT+TGG | - | chr3.2:59470369-59470388 | MS.gene049646:CDS | 35.0% |
| !! | GCTAAGGTTGATAAGTTCTT+AGG | - | chr3.2:59472281-59472300 | MS.gene049646:CDS | 35.0% |
| !! | TATTTGGCAGAAGGTTGATA+GGG | - | chr3.2:59472118-59472137 | MS.gene049646:CDS | 35.0% |
| !! | TTGGTGCTAAAAAAGGAGAT+TGG | - | chr3.2:59470851-59470870 | MS.gene049646:CDS | 35.0% |
| !!! | AGTCACGTACTTGTTTTGAT+AGG | + | chr3.2:59470496-59470515 | None:intergenic | 35.0% |
| !!! | CCAGCTTGTTTTGCAATATT+TGG | + | chr3.2:59469943-59469962 | None:intergenic | 35.0% |
| !!! | CGATTTTTAAAACGTGGGAT+GGG | - | chr3.2:59470188-59470207 | MS.gene049646:CDS | 35.0% |
| !!! | CTTCTCCTTTAGCTTTTTGT+GGG | - | chr3.2:59470398-59470417 | MS.gene049646:CDS | 35.0% |
| !!! | TCGATTTTTAAAACGTGGGA+TGG | - | chr3.2:59470187-59470206 | MS.gene049646:CDS | 35.0% |
| !!! | TCTTCTCCTTTAGCTTTTTG+TGG | - | chr3.2:59470397-59470416 | MS.gene049646:CDS | 35.0% |
| !!! | TTCTCCTTTAGCTTTTTGTG+GGG | - | chr3.2:59470399-59470418 | MS.gene049646:CDS | 35.0% |
| AAACATGGCTATACTAGGTG+TGG | - | chr3.2:59471896-59471915 | MS.gene049646:intron | 40.0% | |
| AATGGTATAGCCATAGCCAT+AGG | + | chr3.2:59472044-59472063 | None:intergenic | 40.0% | |
| AGCCATGTTTCGATAAACGA+GGG | + | chr3.2:59471886-59471905 | None:intergenic | 40.0% | |
| AGGAGATCTCTGTGGAAAAA+GGG | - | chr3.2:59469424-59469443 | MS.gene049646:CDS | 40.0% | |
| ATAGAGGTTTCAGTTTCGGT+CGG | + | chr3.2:59470580-59470599 | None:intergenic | 40.0% | |
| ATCGGTGGAATTCTTTCATG+GGG | - | chr3.2:59470811-59470830 | MS.gene049646:CDS | 40.0% | |
| ATGAGGGGATTTGATCTTTG+AGG | + | chr3.2:59471398-59471417 | None:intergenic | 40.0% | |
| ATTTGCTTGCTTGTGTAGGT+GGG | - | chr3.2:59469890-59469909 | MS.gene049646:CDS | 40.0% | |
| CCAAGTTATTGGAACTGCTA+TGG | - | chr3.2:59471770-59471789 | MS.gene049646:intron | 40.0% | |
| CCATAGCAGTTCCAATAACT+TGG | + | chr3.2:59471773-59471792 | None:intergenic | 40.0% | |
| CTCAAACAAAGCAGCTTACA+TGG | - | chr3.2:59470886-59470905 | MS.gene049646:CDS | 40.0% | |
| CTTTAGCTGGTGGAAAATGA+AGG | + | chr3.2:59471475-59471494 | None:intergenic | 40.0% | |
| GAAAATGAAGGGGATGGTAA+TGG | + | chr3.2:59471463-59471482 | None:intergenic | 40.0% | |
| GAAACCCCACAAAAAGCTAA+AGG | + | chr3.2:59470406-59470425 | None:intergenic | 40.0% | |
| GATCGGTGGAATTCTTTCAT+GGG | - | chr3.2:59470810-59470829 | MS.gene049646:CDS | 40.0% | |
| GCCAATGATGTTAAGAGTCT+TGG | - | chr3.2:59469967-59469986 | MS.gene049646:CDS | 40.0% | |
| GTATTCTCCTGTCTGGTAAA+AGG | + | chr3.2:59469666-59469685 | None:intergenic | 40.0% | |
| GTTCTTGGCACAACTCTTAT+AGG | - | chr3.2:59471261-59471280 | MS.gene049646:intron | 40.0% | |
| TAGCCATGTTTCGATAAACG+AGG | + | chr3.2:59471887-59471906 | None:intergenic | 40.0% | |
| TATTCCTGTTCCTATGGCTA+TGG | - | chr3.2:59472031-59472050 | MS.gene049646:CDS | 40.0% | |
| TCAAAGATCAAATCCCCTCA+TGG | - | chr3.2:59471397-59471416 | MS.gene049646:intron | 40.0% | |
| TCCATCTCCACATATCAAAC+CGG | + | chr3.2:59472177-59472196 | None:intergenic | 40.0% | |
| TCTGTGGAAAAAGGGTTTGA+AGG | - | chr3.2:59469432-59469451 | MS.gene049646:CDS | 40.0% | |
| TGATCGGTGGAATTCTTTCA+TGG | - | chr3.2:59470809-59470828 | MS.gene049646:CDS | 40.0% | |
| TGGCTATTCTACAACGCTTT+CGG | - | chr3.2:59471819-59471838 | MS.gene049646:intron | 40.0% | |
| TGGCTCACAAACATGGATTT+CGG | + | chr3.2:59471753-59471772 | None:intergenic | 40.0% | |
| TGTAATACCACTTTAGCTGG+TGG | + | chr3.2:59471485-59471504 | None:intergenic | 40.0% | |
| TTAGCTGGTGGAAAATGAAG+GGG | + | chr3.2:59471473-59471492 | None:intergenic | 40.0% | |
| TTCAGTGCTAGTGATGATTG+TGG | - | chr3.2:59470438-59470457 | MS.gene049646:intron | 40.0% | |
| TTTGCAAACTTCCCCACATT+TGG | - | chr3.2:59470462-59470481 | MS.gene049646:intron | 40.0% | |
| ! | AATGTTTCTGCTGGGTTGTT+AGG | - | chr3.2:59469582-59469601 | MS.gene049646:CDS | 40.0% |
| ! | ACAACCATAGGCATTGCAAA+AGG | + | chr3.2:59471541-59471560 | None:intergenic | 40.0% |
| ! | ATGTTTCTGCTGGGTTGTTA+GGG | - | chr3.2:59469583-59469602 | MS.gene049646:CDS | 40.0% |
| ! | ATTTTCCGTAAGTCGATGCA+AGG | + | chr3.2:59471581-59471600 | None:intergenic | 40.0% |
| ! | CACTAGCACTGAAAAACCAT+TGG | + | chr3.2:59470431-59470450 | None:intergenic | 40.0% |
| ! | CTTCGTTGAATGTTTCTGCT+GGG | - | chr3.2:59469574-59469593 | MS.gene049646:CDS | 40.0% |
| ! | CTTTCTTGGTCTCTTTTCAG+TGG | - | chr3.2:59470026-59470045 | MS.gene049646:CDS | 40.0% |
| ! | GGTGATGGTCTATACAACTT+TGG | - | chr3.2:59471234-59471253 | MS.gene049646:CDS | 40.0% |
| ! | GTTGATAAGATGAGCTGTTG+CGG | + | chr3.2:59470316-59470335 | None:intergenic | 40.0% |
| ! | TCATTTTCCACCAGCTAAAG+TGG | - | chr3.2:59471475-59471494 | MS.gene049646:intron | 40.0% |
| ! | TGTCGTCGAATGAAAGTGTA+GGG | + | chr3.2:59471356-59471375 | None:intergenic | 40.0% |
| ! | TTGTCGTCGAATGAAAGTGT+AGG | + | chr3.2:59471357-59471376 | None:intergenic | 40.0% |
| ! | TTTTCCGTAAGTCGATGCAA+GGG | + | chr3.2:59471580-59471599 | None:intergenic | 40.0% |
| ! | TTTTGCAATGCCTATGGTTG+TGG | - | chr3.2:59471540-59471559 | MS.gene049646:intron | 40.0% |
| ! | TTTTGTGGGGTTTCTTCCAA+TGG | - | chr3.2:59470412-59470431 | MS.gene049646:CDS | 40.0% |
| ! | TTTTTCTGCAACCTATGTGG+GGG | - | chr3.2:59470747-59470766 | MS.gene049646:CDS | 40.0% |
| !! | CCTCTCATTGGTGCTAAAAA+AGG | - | chr3.2:59470844-59470863 | MS.gene049646:CDS | 40.0% |
| !! | CTTGATTTGCTTGCTTGTGT+AGG | - | chr3.2:59469886-59469905 | MS.gene049646:CDS | 40.0% |
| !! | TGCTTTGTTTGAGATCAGCA+GGG | + | chr3.2:59470879-59470898 | None:intergenic | 40.0% |
| !!! | CCTTTTTTAGCACCAATGAG+AGG | + | chr3.2:59470847-59470866 | None:intergenic | 40.0% |
| AAACTTCCCCACATTTGGTC+TGG | - | chr3.2:59470467-59470486 | MS.gene049646:intron | 45.0% | |
| AAGGAACATCTGTTCCTACG+TGG | - | chr3.2:59469451-59469470 | MS.gene049646:CDS | 45.0% | |
| AATGGTGTTCGCGACTATGT+CGG | - | chr3.2:59471990-59472009 | MS.gene049646:CDS | 45.0% | |
| ACAACTTGAGGAGATCTCTG+TGG | - | chr3.2:59469416-59469435 | MS.gene049646:CDS | 45.0% | |
| ACCAAGTTGCTTGAGAAAGC+TGG | - | chr3.2:59469627-59469646 | MS.gene049646:CDS | 45.0% | |
| ACCAGCTTTCTCAAGCAACT+TGG | + | chr3.2:59469631-59469650 | None:intergenic | 45.0% | |
| AGCAGCTTACATGGTCTTCA+AGG | - | chr3.2:59470895-59470914 | MS.gene049646:CDS | 45.0% | |
| AGGGTTAAGGCTGATGCATT+TGG | - | chr3.2:59472137-59472156 | MS.gene049646:CDS | 45.0% | |
| AGTTGCTTGAGAAAGCTGGT+TGG | - | chr3.2:59469631-59469650 | MS.gene049646:CDS | 45.0% | |
| ATAGCCATAGCCATAGGAAC+AGG | + | chr3.2:59472038-59472057 | None:intergenic | 45.0% | |
| ATAGGCTTCCAGACCAAATG+TGG | + | chr3.2:59470478-59470497 | None:intergenic | 45.0% | |
| ATCCGTTAGTCCACAACCAT+AGG | + | chr3.2:59471553-59471572 | None:intergenic | 45.0% | |
| ATGGCTATACTAGGTGTGGA+CGG | - | chr3.2:59471900-59471919 | MS.gene049646:intron | 45.0% | |
| CCAGCAGAAACATTCAACGA+AGG | + | chr3.2:59469576-59469595 | None:intergenic | 45.0% | |
| GAGGAGATCTCTGTGGAAAA+AGG | - | chr3.2:59469423-59469442 | MS.gene049646:CDS | 45.0% | |
| GCAAGAGCAAGAAAAGAGCT+AGG | + | chr3.2:59472212-59472231 | None:intergenic | 45.0% | |
| GCAGAAACAGGTTACGGTTA+GGG | - | chr3.2:59469473-59469492 | MS.gene049646:CDS | 45.0% | |
| GCTAGTGGAATTGCATTCAG+CGG | - | chr3.2:59469711-59469730 | MS.gene049646:CDS | 45.0% | |
| GTCAAGAGCAGCAAATGCTA+AGG | - | chr3.2:59472265-59472284 | MS.gene049646:CDS | 45.0% | |
| GTTTGGCACCTTCTGATGTA+TGG | + | chr3.2:59470344-59470363 | None:intergenic | 45.0% | |
| TACAACGCTTTCGGTACTCT+TGG | - | chr3.2:59471828-59471847 | MS.gene049646:intron | 45.0% | |
| TACGTGGCAGAAACAGGTTA+CGG | - | chr3.2:59469467-59469486 | MS.gene049646:CDS | 45.0% | |
| TAGGCTTCCAGACCAAATGT+GGG | + | chr3.2:59470477-59470496 | None:intergenic | 45.0% | |
| TAGTACTGTACCTTTCGGAG+TGG | + | chr3.2:59470054-59470073 | None:intergenic | 45.0% | |
| ! | AATGAAAGTGTAGGGGAGAG+AGG | + | chr3.2:59471348-59471367 | None:intergenic | 45.0% |
| ! | ACTTGTGTTGTTGCTGCTAG+TGG | - | chr3.2:59469696-59469715 | MS.gene049646:CDS | 45.0% |
| ! | AGCTCTTTTCTTGCTCTTGC+TGG | - | chr3.2:59472212-59472231 | MS.gene049646:CDS | 45.0% |
| ! | ATGGTTGTGGACTAACGGAT+TGG | - | chr3.2:59471553-59471572 | MS.gene049646:intron | 45.0% |
| ! | CATCTTCGCTATTGGTGCTT+GGG | - | chr3.2:59471605-59471624 | MS.gene049646:CDS | 45.0% |
| ! | CCTTCGTTGAATGTTTCTGC+TGG | - | chr3.2:59469573-59469592 | MS.gene049646:CDS | 45.0% |
| ! | GATTTGCTTGCTTGTGTAGG+TGG | - | chr3.2:59469889-59469908 | MS.gene049646:CDS | 45.0% |
| ! | GGGTTTGGTAGCTACTTGTT+TGG | - | chr3.2:59469910-59469929 | MS.gene049646:CDS | 45.0% |
| ! | GTCGTCGAATGAAAGTGTAG+GGG | + | chr3.2:59471355-59471374 | None:intergenic | 45.0% |
| ! | TCCGGTTTGATATGTGGAGA+TGG | - | chr3.2:59472173-59472192 | MS.gene049646:CDS | 45.0% |
| ! | TGCCTATGGTTGTGGACTAA+CGG | - | chr3.2:59471548-59471567 | MS.gene049646:intron | 45.0% |
| ! | TTCTTTCATGGGGTGTCATG+TGG | - | chr3.2:59470821-59470840 | MS.gene049646:CDS | 45.0% |
| !! | CTAGCCTTTTGCAATGCCTA+TGG | - | chr3.2:59471534-59471553 | MS.gene049646:intron | 45.0% |
| !! | CTGCTTTGTTTGAGATCAGC+AGG | + | chr3.2:59470880-59470899 | None:intergenic | 45.0% |
| !! | GAGAGGAGCATTTGGATCAT+CGG | + | chr3.2:59471331-59471350 | None:intergenic | 45.0% |
| !! | GCAGAAGGTTGATAGGGTTA+AGG | - | chr3.2:59472124-59472143 | MS.gene049646:CDS | 45.0% |
| !! | GCCGGTGCCATGATTATTAA+TGG | - | chr3.2:59471972-59471991 | MS.gene049646:CDS | 45.0% |
| !! | TTTCGATAAACGAGGGCGTT+AGG | + | chr3.2:59471879-59471898 | None:intergenic | 45.0% |
| !! | TTCATTAATTAATAAAATAA+AGG | + | chr3.2:59470521-59470540 | None:intergenic | 5.0% |
| !!! | TTTTTATTTATTTAAATTGT+AGG | - | chr3.2:59470950-59470969 | MS.gene049646:intron | 5.0% |
| AGGCTTCCAGACCAAATGTG+GGG | + | chr3.2:59470476-59470495 | None:intergenic | 50.0% | |
| CCAAGCACCAATAGCGAAGA+TGG | + | chr3.2:59471607-59471626 | None:intergenic | 50.0% | |
| CCTGCAATTGCGAACCATGA+GGG | + | chr3.2:59471414-59471433 | None:intergenic | 50.0% | |
| CGCCCTCGTTTATCGAAACA+TGG | - | chr3.2:59471881-59471900 | MS.gene049646:intron | 50.0% | |
| CTGCAATTGCGAACCATGAG+GGG | + | chr3.2:59471413-59471432 | None:intergenic | 50.0% | |
| CTGGTGGAAAATGAAGGGGA+TGG | + | chr3.2:59471469-59471488 | None:intergenic | 50.0% | |
| GACACCACATGCTGCTAAAC+CGG | + | chr3.2:59471658-59471677 | None:intergenic | 50.0% | |
| GCATTGCAAAAGGCTAGTGC+AGG | + | chr3.2:59471531-59471550 | None:intergenic | 50.0% | |
| GGCAGAAACAGGTTACGGTT+AGG | - | chr3.2:59469472-59469491 | MS.gene049646:CDS | 50.0% | |
| TATCATCCCAACCCCCACAT+AGG | + | chr3.2:59470761-59470780 | None:intergenic | 50.0% | |
| TGTTCCTACGTGGCAGAAAC+AGG | - | chr3.2:59469461-59469480 | MS.gene049646:CDS | 50.0% | |
| TTCAGTGGTTCCACTCCGAA+AGG | - | chr3.2:59470041-59470060 | MS.gene049646:CDS | 50.0% | |
| TTCGGTACTCTTGGTCAACC+TGG | - | chr3.2:59471837-59471856 | MS.gene049646:intron | 50.0% | |
| TTTGGATCAGCTGTTGCGTC+CGG | - | chr3.2:59472155-59472174 | MS.gene049646:CDS | 50.0% | |
| ! | CCATCTTCGCTATTGGTGCT+TGG | - | chr3.2:59471604-59471623 | MS.gene049646:CDS | 50.0% |
| ! | CTTGCTTGTGTAGGTGGGTT+TGG | - | chr3.2:59469895-59469914 | MS.gene049646:CDS | 50.0% |
| ! | GTTGCGTCCGGTTTGATATG+TGG | - | chr3.2:59472167-59472186 | MS.gene049646:CDS | 50.0% |
| !! | GTAACCTGTTTCTGCCACGT+AGG | + | chr3.2:59469468-59469487 | None:intergenic | 50.0% |
| !! | TGGTCCCTTGCATCGACTTA+CGG | - | chr3.2:59471573-59471592 | MS.gene049646:intron | 50.0% |
| CACATGCTGCTAAACCGGCT+AGG | + | chr3.2:59471653-59471672 | None:intergenic | 55.0% | |
| CCCTATGACGTCGAAAGCCA+CGG | - | chr3.2:59469360-59469379 | MS.gene049646:CDS | 55.0% | |
| CCCTCATGGTTCGCAATTGC+AGG | - | chr3.2:59471411-59471430 | MS.gene049646:intron | 55.0% | |
| CCGTGGCTTTCGACGTCATA+GGG | + | chr3.2:59469363-59469382 | None:intergenic | 55.0% | |
| CTGCAACCTATGTGGGGGTT+GGG | - | chr3.2:59470752-59470771 | MS.gene049646:CDS | 55.0% | |
| GCCTGCAATTGCGAACCATG+AGG | + | chr3.2:59471415-59471434 | None:intergenic | 55.0% | |
| TCTGCAACCTATGTGGGGGT+TGG | - | chr3.2:59470751-59470770 | MS.gene049646:CDS | 55.0% | |
| TGAGCTGTTGCGGTACCACT+TGG | + | chr3.2:59470306-59470325 | None:intergenic | 55.0% | |
| ! | CTAGCCGGTTTAGCAGCATG+TGG | - | chr3.2:59471651-59471670 | MS.gene049646:CDS | 55.0% |
| ! | CTTTGCGGCGTGTTTTTCGC+CGG | - | chr3.2:59471954-59471973 | MS.gene049646:CDS | 55.0% |
| ! | GGTGTCATGTGGCCTCTCAT+TGG | - | chr3.2:59470832-59470851 | MS.gene049646:CDS | 55.0% |
| ! | TTCGCTATTGGTGCTTGGGC+AGG | - | chr3.2:59471609-59471628 | MS.gene049646:CDS | 55.0% |
| !! | AAACGAGGGCGTTAGGTGCA+GGG | + | chr3.2:59471872-59471891 | None:intergenic | 55.0% |
| !! | GTAGGGGAGAGAGGAGCATT+TGG | + | chr3.2:59471339-59471358 | None:intergenic | 55.0% |
| !! | TAAACGAGGGCGTTAGGTGC+AGG | + | chr3.2:59471873-59471892 | None:intergenic | 55.0% |
| GCCGTGGCTTTCGACGTCAT+AGG | + | chr3.2:59469364-59469383 | None:intergenic | 60.0% | |
| GCTTGGGCAGGTGCGTCTAA+CGG | - | chr3.2:59471621-59471640 | MS.gene049646:CDS | 60.0% | |
| GGTGCAGGGTATGGTGAACC+AGG | + | chr3.2:59471858-59471877 | None:intergenic | 60.0% | |
| TCTAACGGCGGTGTCCTAGC+CGG | - | chr3.2:59471636-59471655 | MS.gene049646:CDS | 60.0% | |
| TGACGTCGAAAGCCACGGCA+TGG | - | chr3.2:59469365-59469384 | MS.gene049646:CDS | 60.0% | |
| ! | AGGGCGTTAGGTGCAGGGTA+TGG | + | chr3.2:59471867-59471886 | None:intergenic | 60.0% |
| CGAAAGCCACGGCATGGCTG+CGG | - | chr3.2:59469371-59469390 | MS.gene049646:CDS | 65.0% | |
| TGGGCAGGTGCGTCTAACGG+CGG | - | chr3.2:59471624-59471643 | MS.gene049646:CDS | 65.0% | |
| CGGCATGGCTGCGGTTGCAC+CGG | - | chr3.2:59469380-59469399 | MS.gene049646:CDS | 70.0% | |
| GTGCAACCGCAGCCATGCCG+TGG | + | chr3.2:59469380-59469399 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 59469348 | 59472310 | 59469348 | ID=MS.gene049646 |
| chr3.2 | mRNA | 59469348 | 59472310 | 59469348 | ID=MS.gene049646.t1;Parent=MS.gene049646 |
| chr3.2 | exon | 59471926 | 59472310 | 59471926 | ID=MS.gene049646.t1.exon1;Parent=MS.gene049646.t1 |
| chr3.2 | CDS | 59471926 | 59472310 | 59471926 | ID=cds.MS.gene049646.t1;Parent=MS.gene049646.t1 |
| chr3.2 | exon | 59471596 | 59471750 | 59471596 | ID=MS.gene049646.t1.exon2;Parent=MS.gene049646.t1 |
| chr3.2 | CDS | 59471596 | 59471750 | 59471596 | ID=cds.MS.gene049646.t1;Parent=MS.gene049646.t1 |
| chr3.2 | exon | 59471304 | 59471385 | 59471304 | ID=MS.gene049646.t1.exon3;Parent=MS.gene049646.t1 |
| chr3.2 | CDS | 59471304 | 59471385 | 59471304 | ID=cds.MS.gene049646.t1;Parent=MS.gene049646.t1 |
| chr3.2 | exon | 59471153 | 59471273 | 59471153 | ID=MS.gene049646.t1.exon4;Parent=MS.gene049646.t1 |
| chr3.2 | CDS | 59471153 | 59471273 | 59471153 | ID=cds.MS.gene049646.t1;Parent=MS.gene049646.t1 |
| chr3.2 | exon | 59470734 | 59470923 | 59470734 | ID=MS.gene049646.t1.exon5;Parent=MS.gene049646.t1 |
| chr3.2 | CDS | 59470734 | 59470923 | 59470734 | ID=cds.MS.gene049646.t1;Parent=MS.gene049646.t1 |
| chr3.2 | exon | 59469348 | 59470451 | 59469348 | ID=MS.gene049646.t1.exon6;Parent=MS.gene049646.t1 |
| chr3.2 | CDS | 59469348 | 59470451 | 59469348 | ID=cds.MS.gene049646.t1;Parent=MS.gene049646.t1 |
| Gene Sequence |
| Protein sequence |
