AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049790.t1 MTR_4g057595 95.158 475 23 0 19 493 21 495 0.0 949
MS.gene049790.t1 MTR_4g057585 90.505 495 44 2 1 493 1 494 0.0 926
MS.gene049790.t1 MTR_4g057600 73.939 495 125 2 1 493 1 493 0.0 772
MS.gene049790.t1 MTR_2g095750 65.650 492 159 6 7 493 13 499 0.0 672
MS.gene049790.t1 MTR_4g057570 64.583 480 156 7 19 493 21 491 0.0 626
MS.gene049790.t1 MTR_2g095730 63.008 492 164 8 9 493 16 496 0.0 625
MS.gene049790.t1 MTR_1g094155 61.446 498 169 6 3 493 7 488 0.0 624
MS.gene049790.t1 MTR_1g050545 61.507 491 174 4 7 493 3 482 0.0 606
MS.gene049790.t1 MTR_2g095710 59.179 463 171 8 34 493 35 482 0.0 535
MS.gene049790.t1 MTR_5g097180 33.005 406 255 6 91 489 37 432 7.09e-71 233
MS.gene049790.t1 MTR_4g084710 32.266 406 258 7 91 489 39 434 1.48e-66 221
MS.gene049790.t1 MTR_3g079560 30.211 427 240 14 95 493 92 488 6.00e-53 186
MS.gene049790.t1 MTR_3g434850 30.536 429 244 17 95 491 44 450 3.41e-51 181
MS.gene049790.t1 MTR_3g079590 29.535 430 239 14 95 493 92 488 1.61e-50 180
MS.gene049790.t1 MTR_7g080180 28.998 469 246 15 95 491 42 495 2.85e-50 179
MS.gene049790.t1 MTR_3g079570 29.469 414 259 12 95 493 93 488 3.75e-49 176
MS.gene049790.t1 MTR_3g034290 28.024 496 307 14 27 491 10 486 6.16e-49 176
MS.gene049790.t1 MTR_3g079600 29.454 421 254 13 95 493 90 489 2.71e-48 174
MS.gene049790.t1 MTR_2g449850 30.444 450 235 18 86 491 43 458 6.02e-48 172
MS.gene049790.t1 MTR_1g021010 29.977 427 253 13 88 493 83 484 6.55e-48 172
MS.gene049790.t1 MTR_4g122950 27.394 449 262 14 88 492 46 474 1.25e-47 172
MS.gene049790.t1 MTR_2g063000 29.742 427 250 13 95 491 53 459 2.71e-47 171
MS.gene049790.t1 MTR_1g020090 30.000 450 268 16 67 493 70 495 4.56e-47 171
MS.gene049790.t1 MTR_2g062990 30.310 419 256 13 95 491 54 458 6.38e-47 169
MS.gene049790.t1 MTR_3g079630 30.896 424 249 16 95 493 92 496 7.14e-47 170
MS.gene049790.t1 MTR_4g122960 28.604 444 261 13 88 492 46 472 1.18e-46 169
MS.gene049790.t1 MTR_2g062980 29.343 426 253 13 95 492 54 459 1.58e-46 168
MS.gene049790.t1 MTR_5g072570 28.899 436 263 12 88 491 37 457 2.27e-46 168
MS.gene049790.t1 MTR_7g051430 28.139 462 254 11 95 491 44 492 2.51e-46 168
MS.gene049790.t1 MTR_3g045770 29.481 424 259 11 97 493 43 453 3.15e-46 167
MS.gene049790.t1 MTR_3g498755 29.108 426 256 15 97 491 31 441 3.53e-45 164
MS.gene049790.t1 MTR_7g051430 36.220 254 143 4 95 342 44 284 5.80e-45 163
MS.gene049790.t1 MTR_3g079620 28.538 431 264 14 88 493 85 496 7.67e-45 164
MS.gene049790.t1 MTR_4g089155 28.235 425 273 11 92 491 64 481 1.42e-44 163
MS.gene049790.t1 MTR_1g040370 29.440 411 250 13 86 491 36 411 1.52e-44 162
MS.gene049790.t1 MTR_1g021020 29.330 433 247 15 88 493 85 485 2.83e-44 162
MS.gene049790.t1 MTR_2g018600 26.603 421 275 9 97 489 50 464 3.99e-44 162
MS.gene049790.t1 MTR_3g100420 27.804 428 250 11 107 492 84 494 4.47e-44 162
MS.gene049790.t1 MTR_8g099930 27.896 423 266 12 95 490 47 457 5.30e-44 161
MS.gene049790.t1 MTR_7g021130 28.205 429 263 14 92 491 41 453 8.99e-44 160
MS.gene049790.t1 MTR_2g081620 28.606 416 269 11 95 492 55 460 1.28e-43 160
MS.gene049790.t1 MTR_4g021530 28.085 470 269 16 62 489 23 465 1.46e-43 160
MS.gene049790.t1 MTR_4g021510 28.381 451 284 13 65 488 25 463 4.02e-43 159
MS.gene049790.t1 MTR_1g095560 28.103 427 254 11 95 490 47 451 5.00e-43 159
MS.gene049790.t1 MTR_2g018590 27.315 432 259 11 97 489 49 464 1.07e-42 158
MS.gene049790.t1 MTR_1g095560 27.313 454 255 13 95 490 47 483 3.11e-42 157
MS.gene049790.t1 MTR_3g090150 28.873 426 274 13 88 491 41 459 5.25e-42 156
MS.gene049790.t1 MTR_7g080180 35.521 259 146 6 95 342 42 290 6.58e-42 155
MS.gene049790.t1 MTR_3g090130 28.162 419 271 12 95 491 42 452 2.94e-41 154
MS.gene049790.t1 MTR_4g021535 27.880 434 248 15 97 489 52 461 4.29e-41 153
MS.gene049790.t1 MTR_4g021490 28.606 409 252 12 109 489 69 465 4.63e-41 153
MS.gene049790.t1 MTR_2g018630 26.841 421 267 11 97 489 53 460 4.81e-41 153
MS.gene049790.t1 MTR_0003s0560 28.132 423 268 14 87 491 79 483 5.60e-41 154
MS.gene049790.t1 MTR_4g021500 26.637 443 280 14 68 489 464 882 1.71e-40 156
MS.gene049790.t1 MTR_4g021500 29.567 416 237 13 109 488 69 464 8.81e-40 154
MS.gene049790.t1 MTR_1g095540 27.021 433 265 14 88 490 40 451 3.43e-40 150
MS.gene049790.t1 MTR_3g034290 28.329 413 252 12 27 409 10 408 5.32e-40 149
MS.gene049790.t1 MTR_4g021500 29.567 416 237 13 109 488 69 464 8.17e-40 154
MS.gene049790.t1 MTR_4g021500 25.696 467 272 14 68 489 464 900 2.77e-38 149
MS.gene049790.t1 MTR_4g021520 28.802 434 244 15 97 489 56 465 1.52e-39 149
MS.gene049790.t1 MTR_8g011350 34.252 254 148 5 95 342 45 285 1.74e-39 149
MS.gene049790.t1 MTR_8g011350 34.252 254 148 5 95 342 45 285 1.98e-39 149
MS.gene049790.t1 MTR_2g012850 26.526 426 271 12 95 491 49 461 9.17e-39 147
MS.gene049790.t1 MTR_4g075150 29.481 424 256 17 95 489 48 457 1.23e-38 147
MS.gene049790.t1 MTR_4g075150 28.438 429 252 16 95 489 48 455 2.21e-38 146
MS.gene049790.t1 MTR_7g013790 27.356 435 251 15 97 491 51 460 2.25e-38 146
MS.gene049790.t1 MTR_2g012860 24.885 434 276 9 92 491 52 469 3.43e-37 143
MS.gene049790.t1 MTR_4g056520 27.500 440 265 13 91 490 29 454 1.63e-35 138
MS.gene049790.t1 MTR_2g063000 26.887 424 235 13 95 491 53 428 3.83e-34 134
MS.gene049790.t1 MTR_0003s0560 34.286 210 134 4 87 293 79 287 1.77e-33 130
MS.gene049790.t1 MTR_4g021520 28.967 397 218 14 97 453 56 428 1.11e-32 129
MS.gene049790.t1 MTR_2g009200 24.020 408 265 13 106 490 50 435 6.72e-29 119
MS.gene049790.t1 MTR_2g084530 27.126 435 263 14 91 486 29 448 1.03e-26 112
MS.gene049790.t1 MTR_2g018630 25.000 356 232 10 156 489 13 355 8.64e-25 105
MS.gene049790.t1 MTR_1g102130 23.239 426 250 14 97 491 107 486 2.67e-23 103
MS.gene049790.t1 MTR_4g021535 23.733 434 219 16 97 489 52 414 3.89e-21 95.9
MS.gene049790.t1 MTR_0075s0010 40.230 87 44 3 110 189 35 120 2.13e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049790.t1 AT3G45010 62.374 497 173 5 6 493 9 500 0.0 651
MS.gene049790.t1 AT3G10410 62.272 493 176 6 7 493 8 496 0.0 647
MS.gene049790.t1 AT5G22980 61.200 500 179 7 4 494 3 496 0.0 625
MS.gene049790.t1 AT1G15000 32.187 407 256 9 91 491 31 423 1.84e-66 221
MS.gene049790.t1 AT5G22960 57.527 186 59 3 70 254 8 174 2.56e-66 212
MS.gene049790.t1 AT3G25420 28.726 463 249 11 95 491 44 491 8.30e-55 191
MS.gene049790.t1 AT3G52010 30.000 430 252 13 88 490 72 479 1.33e-53 188
MS.gene049790.t1 AT4G12910 28.758 459 254 11 95 492 49 495 1.75e-53 188
MS.gene049790.t1 AT3G52000 29.384 422 261 10 88 490 71 474 2.32e-52 184
MS.gene049790.t1 AT2G22920 28.894 443 275 15 66 492 15 433 5.46e-52 182
MS.gene049790.t1 AT2G23010 27.689 437 289 10 65 491 15 434 4.08e-51 180
MS.gene049790.t1 AT2G23010 27.460 437 290 10 65 491 15 434 1.70e-50 178
MS.gene049790.t1 AT3G17180 30.374 428 262 15 93 491 51 471 1.50e-49 177
MS.gene049790.t1 AT3G12203 28.606 416 251 14 96 491 24 413 1.63e-49 175
MS.gene049790.t1 AT3G12203 28.606 416 251 14 96 491 45 434 3.46e-49 175
MS.gene049790.t1 AT1G73300 27.465 426 272 12 81 491 35 438 4.13e-49 175
MS.gene049790.t1 AT1G73300 27.465 426 272 12 81 491 35 438 4.13e-49 175
MS.gene049790.t1 AT2G22980 27.928 444 265 14 68 491 19 427 9.96e-49 173
MS.gene049790.t1 AT1G73310 27.209 430 268 12 81 491 35 438 1.45e-48 173
MS.gene049790.t1 AT3G12203 29.104 402 239 14 110 491 1 376 1.77e-48 171
MS.gene049790.t1 AT2G22970 27.679 448 265 16 68 491 18 430 3.19e-48 172
MS.gene049790.t1 AT3G52020 29.551 423 262 16 88 490 87 493 3.74e-48 173
MS.gene049790.t1 AT1G73290 26.942 412 262 10 97 492 48 436 5.35e-48 172
MS.gene049790.t1 AT1G73280 27.093 454 279 14 59 491 16 438 5.52e-48 172
MS.gene049790.t1 AT5G23210 31.250 448 241 17 95 494 65 493 1.77e-47 172
MS.gene049790.t1 AT2G22920 30.366 382 233 12 66 432 15 378 2.33e-47 169
MS.gene049790.t1 AT1G73270 27.033 418 254 10 97 491 49 438 2.55e-47 170
MS.gene049790.t1 AT1G73270 27.033 418 254 10 97 491 49 438 2.81e-47 170
MS.gene049790.t1 AT5G08260 30.159 441 239 16 95 489 53 470 4.52e-47 170
MS.gene049790.t1 AT5G36180 27.670 412 261 12 96 491 48 438 2.69e-46 167
MS.gene049790.t1 AT3G10450 27.251 422 268 14 86 491 36 434 3.52e-46 167
MS.gene049790.t1 AT4G30810 26.603 421 277 8 93 492 50 459 1.63e-45 166
MS.gene049790.t1 AT2G35770 27.358 424 270 8 88 489 45 452 2.34e-45 165
MS.gene049790.t1 AT3G63470 28.538 424 247 14 95 489 95 491 2.57e-45 166
MS.gene049790.t1 AT1G73290 28.409 352 220 7 96 432 47 381 2.63e-45 164
MS.gene049790.t1 AT3G10450 26.895 409 262 13 99 491 4 391 4.32e-45 162
MS.gene049790.t1 AT4G15100 28.702 439 252 16 95 491 58 477 4.50e-45 165
MS.gene049790.t1 AT4G12910 28.861 395 214 9 95 429 49 436 7.80e-45 163
MS.gene049790.t1 AT2G22990 27.209 430 270 15 81 491 25 430 9.99e-45 162
MS.gene049790.t1 AT2G22980 28.293 410 241 12 68 458 19 394 1.02e-44 162
MS.gene049790.t1 AT3G07990 28.009 432 262 12 88 490 41 452 1.24e-44 163
MS.gene049790.t1 AT2G22980 28.293 410 241 12 68 458 19 394 1.28e-44 162
MS.gene049790.t1 AT3G12240 28.502 414 255 15 96 491 43 433 1.56e-44 162
MS.gene049790.t1 AT3G12220 28.058 417 257 14 96 493 42 434 1.77e-44 162
MS.gene049790.t1 AT2G23000 27.078 421 254 13 97 491 41 434 2.47e-44 162
MS.gene049790.t1 AT2G23000 27.078 421 254 13 97 491 41 434 2.47e-44 162
MS.gene049790.t1 AT2G22970 29.124 388 223 13 68 432 18 376 4.03e-44 160
MS.gene049790.t1 AT2G22970 29.124 388 223 13 68 432 18 376 7.84e-44 160
MS.gene049790.t1 AT3G12220 29.208 404 243 15 109 493 25 404 8.50e-44 159
MS.gene049790.t1 AT2G24000 28.372 430 257 14 97 492 46 458 1.34e-43 160
MS.gene049790.t1 AT1G73310 27.838 370 229 9 81 432 35 384 2.93e-43 159
MS.gene049790.t1 AT2G22920 33.016 315 182 10 66 368 15 312 3.58e-43 155
MS.gene049790.t1 AT1G73290 31.621 253 157 4 96 336 47 295 4.17e-43 155
MS.gene049790.t1 AT1G28110 28.009 432 256 15 95 492 45 455 4.30e-43 159
MS.gene049790.t1 AT1G28110 28.009 432 256 15 95 492 45 455 4.30e-43 159
MS.gene049790.t1 AT1G61130 28.436 422 267 12 95 491 45 456 3.72e-42 156
MS.gene049790.t1 AT2G12480 28.250 400 264 9 97 491 47 428 9.05e-42 155
MS.gene049790.t1 AT1G33540 27.083 432 263 13 97 491 45 461 1.07e-41 155
MS.gene049790.t1 AT2G12480 28.358 402 262 9 97 491 47 429 1.14e-41 154
MS.gene049790.t1 AT3G10450 28.453 362 227 11 86 432 36 380 1.20e-41 154
MS.gene049790.t1 AT5G09640 26.427 473 274 17 66 491 17 462 3.27e-41 154
MS.gene049790.t1 AT2G35780 26.637 443 274 11 76 489 25 445 3.61e-41 153
MS.gene049790.t1 AT1G33540 26.977 430 262 13 99 491 4 418 4.46e-41 152
MS.gene049790.t1 AT5G23210 40.887 203 115 4 95 292 65 267 4.50e-41 153
MS.gene049790.t1 AT1G11080 28.959 442 249 17 95 491 64 485 4.97e-41 154
MS.gene049790.t1 AT1G11080 28.959 442 249 17 95 491 64 485 5.36e-41 154
MS.gene049790.t1 AT1G43780 30.093 432 247 16 97 491 53 466 7.83e-41 153
MS.gene049790.t1 AT2G12480 28.250 400 263 10 97 491 47 427 9.26e-41 152
MS.gene049790.t1 AT3G12230 27.830 424 245 16 96 491 42 432 1.06e-40 152
MS.gene049790.t1 AT2G22990 27.525 396 246 13 81 458 25 397 1.38e-40 151
MS.gene049790.t1 AT4G30610 29.234 431 257 15 93 491 44 458 1.55e-40 152
MS.gene049790.t1 AT3G10450 28.080 349 221 10 99 432 4 337 2.10e-40 149
MS.gene049790.t1 AT2G22990 26.463 393 254 11 81 458 25 397 3.59e-40 150
MS.gene049790.t1 AT2G33530 27.523 436 255 17 95 492 47 459 3.95e-40 151
MS.gene049790.t1 AT5G42240 29.176 425 263 13 95 491 46 460 5.44e-40 150
MS.gene049790.t1 AT2G22970 38.725 204 111 5 68 264 18 214 5.51e-40 147
MS.gene049790.t1 AT5G42230 28.337 427 264 9 95 491 42 456 6.49e-40 150
MS.gene049790.t1 AT5G42230 28.337 427 264 9 95 491 42 456 6.49e-40 150
MS.gene049790.t1 AT2G24010 29.330 433 237 15 97 491 46 447 8.71e-40 149
MS.gene049790.t1 AT3G02110 27.397 438 252 14 97 491 53 467 2.23e-39 149
MS.gene049790.t1 AT2G12480 27.078 421 267 10 97 491 47 453 2.67e-39 149
MS.gene049790.t1 AT3G17180 30.685 365 223 13 93 429 51 413 2.85e-39 148
MS.gene049790.t1 AT1G73280 34.335 233 142 3 59 285 16 243 3.47e-39 146
MS.gene049790.t1 AT2G22980 30.573 314 183 8 68 368 19 310 4.78e-39 145
MS.gene049790.t1 AT3G12220 33.088 272 171 7 96 358 42 311 2.66e-38 144
MS.gene049790.t1 AT2G05850 25.891 421 282 13 88 490 71 479 1.24e-37 144
MS.gene049790.t1 AT2G22990 25.814 430 267 16 81 491 25 421 5.43e-37 141
MS.gene049790.t1 AT5G23210 30.732 410 217 17 133 494 8 398 3.56e-36 139
MS.gene049790.t1 AT5G23210 30.562 409 217 17 134 494 8 397 1.86e-35 137
MS.gene049790.t1 AT2G24010 28.125 448 238 16 97 491 46 462 3.84e-35 137
MS.gene049790.t1 AT3G56540 40.136 147 85 3 88 232 87 232 1.02e-31 123
MS.gene049790.t1 AT2G27920 27.500 440 254 19 94 486 32 453 8.12e-31 124
MS.gene049790.t1 AT1G73280 25.926 351 219 11 156 491 12 336 2.56e-30 121
MS.gene049790.t1 AT2G24010 26.638 473 238 17 97 491 17 458 2.90e-30 123
MS.gene049790.t1 AT5G23210 38.830 188 103 6 134 316 8 188 2.77e-29 119
MS.gene049790.t1 AT2G24010 34.025 241 131 8 97 317 17 249 3.42e-29 118
MS.gene049790.t1 AT5G36180 26.554 354 213 12 156 491 12 336 6.68e-29 117
MS.gene049790.t1 AT5G36180 26.554 354 213 12 156 491 12 336 6.68e-29 117
MS.gene049790.t1 AT2G22990 24.926 337 218 12 168 491 2 316 1.91e-26 109
MS.gene049790.t1 AT2G22990 24.629 337 219 12 168 491 2 316 5.97e-26 108
MS.gene049790.t1 AT1G73310 26.298 289 183 7 156 432 12 282 1.14e-25 107
MS.gene049790.t1 AT1G73280 24.629 337 213 11 170 491 1 311 2.33e-25 106
MS.gene049790.t1 AT5G36180 27.551 294 173 9 156 432 12 282 1.43e-24 104
MS.gene049790.t1 AT5G36180 26.012 346 205 11 156 475 12 332 1.68e-24 104
MS.gene049790.t1 AT2G22980 25.733 307 181 9 168 458 2 277 4.01e-23 99.8
MS.gene049790.t1 AT2G27920 34.286 140 85 3 352 486 244 381 5.36e-17 83.2
MS.gene049790.t1 AT2G27920 34.286 140 85 3 352 486 249 386 5.46e-17 83.2

Find 90 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTAATTACCTTGCGGATT+TGG 0.221438 4.2:+46145035 None:intergenic
CGTTGGTTTGGTGAAAATTT+TGG 0.249695 4.2:+46145249 None:intergenic
ACTTCTTGAGGATGGAATTA+AGG 0.263632 4.2:-46142347 MS.gene049790:CDS
TTTGGGCAGGGAATTCAAAA+TGG 0.267534 4.2:-46142007 MS.gene049790:intron
ATGCAAACTGAGAGTAAAAT+TGG 0.268852 4.2:+46143038 None:intergenic
CCAAGGAAATAAAGGCAAAA+AGG 0.269045 4.2:-46143398 MS.gene049790:CDS
AAGAATGACTTCTATATTAC+TGG 0.289799 4.2:-46143469 MS.gene049790:CDS
TATCTGTTCGCATTGGTATA+AGG 0.316089 4.2:+46142690 None:intergenic
TTTACGGCAACCTCGCAATC+TGG 0.318156 4.2:+46142962 None:intergenic
ATGTTCCTGCTCTTGCATCT+AGG 0.318626 4.2:-46143426 MS.gene049790:CDS
TAAAATTGGTATTGAATTGC+TGG 0.318900 4.2:+46143052 None:intergenic
CACTTCAGATGTTGGCAAAC+TGG 0.324425 4.2:-46141713 MS.gene049790:CDS
TCTCTCGTGTGGAATGATTA+TGG 0.341875 4.2:-46144133 MS.gene049790:CDS
ATTACTTACATTAACGTTAC+CGG 0.344226 4.2:+46142645 None:intergenic
AAGAGAGTTAGGGATGCTTT+AGG 0.356397 4.2:-46142463 MS.gene049790:CDS
TTCTAAACAAGAAGAGAGTT+AGG 0.357195 4.2:-46142474 MS.gene049790:CDS
GCAGGATTGTTGAATAGTTA+TGG 0.361275 4.2:-46141906 MS.gene049790:CDS
ATTCCATCCTCAAGAAGTTC+AGG 0.365252 4.2:+46142352 None:intergenic
TCACCATGAATTATATTAAC+TGG 0.366105 4.2:+46145183 None:intergenic
ATTATATTAACTGGATCCTT+TGG 0.371296 4.2:+46145192 None:intergenic
CCAGTCAACCATATCACAAC+TGG 0.373577 4.2:+46144226 None:intergenic
TGATTTGTATGACTTCTTGC+AGG 0.374846 4.2:-46143631 MS.gene049790:intron
GATGCAAGGAAACTTGAAAT+AGG 0.385340 4.2:-46141691 None:intergenic
AAGTCATTCTTAACAAACTT+AGG 0.397900 4.2:+46143481 None:intergenic
TGTTCCTGCTCTTGCATCTA+GGG 0.398381 4.2:-46143425 MS.gene049790:CDS
ATTAAGGTTCTTATATATGC+TGG 0.402158 4.2:-46142331 MS.gene049790:CDS
AACATCTGAAGTGCAGCTTT+TGG 0.416607 4.2:+46141723 None:intergenic
GTTAGGGATGCTTTAGGTGT+TGG 0.417016 4.2:-46142457 MS.gene049790:CDS
TACATTAACGTTACCGGCAA+TGG 0.417475 4.2:+46142651 None:intergenic
GATCCAGTTAATATAATTCA+TGG 0.424315 4.2:-46145186 MS.gene049790:CDS
GGTGAATGGGGCAGGACATA+TGG 0.430010 4.2:-46141760 MS.gene049790:CDS
AGTCATTCTTAACAAACTTA+GGG 0.434933 4.2:+46143482 None:intergenic
ATAATGCAATGTTGCAAGAT+TGG 0.457321 4.2:-46142399 MS.gene049790:CDS
AGGGTTCACCAAGGAAATAA+AGG 0.465809 4.2:-46143406 MS.gene049790:CDS
TTAAGGTTCTTATATATGCT+GGG 0.467785 4.2:-46142330 MS.gene049790:CDS
GATATTCCACATGATGAAAC+TGG 0.479658 4.2:-46143663 MS.gene049790:CDS
TAGCTAAAACCTGTCCCAAT+TGG 0.482214 4.2:+46143702 None:intergenic
AGGATGCCCCAGTTGTGATA+TGG 0.483546 4.2:-46144234 MS.gene049790:CDS
TTGGGCAGGGAATTCAAAAT+GGG 0.490061 4.2:-46142006 MS.gene049790:intron
TGACCGAGATCTTCAATAGA+AGG 0.490638 4.2:+46145087 None:intergenic
GGCAGGACATATGGTCCCTA+TGG 0.494483 4.2:-46141751 MS.gene049790:CDS
TTACGGCAACCTCGCAATCT+GGG 0.497580 4.2:+46142963 None:intergenic
TTGGTATTGAATTGCTGGAT+TGG 0.499559 4.2:+46143057 None:intergenic
ATTCCTGAACTTCTTGAGGA+TGG 0.511069 4.2:-46142355 MS.gene049790:CDS
GTGATGTGTAACAGGTGAAT+GGG 0.514606 4.2:-46141773 MS.gene049790:intron
AAGCTTTAACTTATTGCCAA+AGG 0.518571 4.2:-46145208 MS.gene049790:CDS
ATATGGTTGACTGGAGGTCC+AGG 0.522115 4.2:-46144217 MS.gene049790:CDS
TATTGATTATCTGTTCGCAT+TGG 0.523483 4.2:+46142683 None:intergenic
ACGAGGAAGCGAATAGTATC+CGG 0.523737 4.2:+46145059 None:intergenic
GTTCATGCAATGAAGTGGTC+AGG 0.523840 4.2:-46141984 MS.gene049790:CDS
TTTGGATTGGCAGAGAGTAA+AGG 0.526225 4.2:-46142733 MS.gene049790:intron
GTTGACCAACCAATTGGGAC+AGG 0.528579 4.2:-46143711 MS.gene049790:CDS
GCTAGTTCACTGCTGCAACC+TGG 0.533445 4.2:+46144199 None:intergenic
GGATATTCCTGAACTTCTTG+AGG 0.534859 4.2:-46142359 MS.gene049790:CDS
AAAAGCTGCACTTCAGATGT+TGG 0.535873 4.2:-46141721 MS.gene049790:CDS
TGTGATGTGTAACAGGTGAA+TGG 0.544527 4.2:-46141774 MS.gene049790:intron
GAAGATCTCGGTCACCATGC+CGG 0.547294 4.2:-46145078 MS.gene049790:CDS
TCTAAACAAGAAGAGAGTTA+GGG 0.548881 4.2:-46142473 MS.gene049790:CDS
CCAGTTGTGATATGGTTGAC+TGG 0.551036 4.2:-46144226 MS.gene049790:CDS
ATTACTGGAGAATCATATGC+TGG 0.551568 4.2:-46143454 MS.gene049790:CDS
TCGTGTGGAATGATTATGGT+TGG 0.564155 4.2:-46144129 MS.gene049790:CDS
GACATAAGAAAGAAATGTCA+AGG 0.567445 4.2:-46142532 MS.gene049790:CDS
TTGGATGAGAAACTTTGAAG+TGG 0.571105 4.2:-46142380 MS.gene049790:CDS
CAGTCAACCATATCACAACT+GGG 0.574498 4.2:+46144227 None:intergenic
ATCTTCAATAGAAGGACCAT+CGG 0.575473 4.2:+46145095 None:intergenic
CGTGTGGAATGATTATGGTT+GGG 0.577317 4.2:-46144128 MS.gene049790:CDS
CAAATAACTTGTCTCTCGTG+TGG 0.578571 4.2:-46144144 MS.gene049790:CDS
ATGTTGGCAAACTGGATGCA+AGG 0.582345 4.2:-46141705 MS.gene049790:CDS
CTAACACCAGTTTCATCATG+TGG 0.588201 4.2:+46143657 None:intergenic
GATGCGAGAAGTTGCGTATG+AGG 0.589321 4.2:+46145299 None:intergenic
GTGTAACAGGTGAATGGGGC+AGG 0.590576 4.2:-46141768 MS.gene049790:intron
TACCTTGCGGATTTGGAACG+AGG 0.592095 4.2:+46145042 None:intergenic
TAAAACCTGTCCCAATTGGT+TGG 0.592919 4.2:+46143706 None:intergenic
TGATAACAAAATGATTACAA+AGG 0.594810 4.2:-46143014 MS.gene049790:CDS
GGTCCTTCTATTGAAGATCT+CGG 0.595179 4.2:-46145090 MS.gene049790:CDS
CAAGTTGATCCCAGATTGCG+AGG 0.597604 4.2:-46142972 MS.gene049790:CDS
GGGGATTACTATAAACCTCA+AGG 0.608711 4.2:-46143377 MS.gene049790:intron
AATGGGTTCATGCAATGAAG+TGG 0.617006 4.2:-46141989 MS.gene049790:CDS
TAAGGTTCTTATATATGCTG+GGG 0.624411 4.2:-46142329 MS.gene049790:CDS
TGAACCCTAGATGCAAGAGC+AGG 0.635146 4.2:+46143421 None:intergenic
GGACAAAATGATCAATAGAG+TGG 0.639282 4.2:+46145160 None:intergenic
AACGAACAATAACAAAAGAG+AGG 0.642414 4.2:+46145332 None:intergenic
TTCCTCGTTCCAAATCCGCA+AGG 0.666060 4.2:-46145044 MS.gene049790:intron
CTAACCTTTAGAAAAGAGAG+AGG 0.669936 4.2:+46141882 None:intergenic
GAAGCGAATAGTATCCGGCA+TGG 0.671731 4.2:+46145064 None:intergenic
GAATGATTATGGTTGGGACA+AGG 0.673972 4.2:-46144122 MS.gene049790:intron
TGATGTGTAACAGGTGAATG+GGG 0.699009 4.2:-46141772 MS.gene049790:intron
GTTGTGATATGGTTGACTGG+AGG 0.703410 4.2:-46144223 MS.gene049790:CDS
AGTCAACCATATCACAACTG+GGG 0.752820 4.2:+46144228 None:intergenic
CTTGCATCTAGGGTTCACCA+AGG 0.774510 4.2:-46143415 MS.gene049790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAACTAATTAATTAAATA+TGG + chr4.2:46142331-46142350 None:intergenic 10.0%
!!! AATAACAAACTTATTTTATT+TGG - chr4.2:46144289-46144308 MS.gene049790:intron 10.0%
!!! TTGATATTTTATTTTCATTT+GGG - chr4.2:46145016-46145035 MS.gene049790:intron 10.0%
!!! TTTGATATTTTATTTTCATT+TGG - chr4.2:46145015-46145034 MS.gene049790:intron 10.0%
!!! TTTTTATTTATAATAATCAC+AGG - chr4.2:46143519-46143538 MS.gene049790:intron 10.0%
!! ATTCAAAATATATTATTGTG+TGG - chr4.2:46142207-46142226 MS.gene049790:intron 15.0%
!! TGAATCAAGAAAAAATAATA+AGG - chr4.2:46142786-46142805 MS.gene049790:intron 15.0%
!! TGTCAATAATAAAACATATT+TGG + chr4.2:46143260-46143279 None:intergenic 15.0%
!!! AAATACAAGATTTTTAATTG+CGG + chr4.2:46142147-46142166 None:intergenic 15.0%
!!! AAGTTATTTGCAATTTTAAA+AGG + chr4.2:46142886-46142905 None:intergenic 15.0%
!!! AATTTGATTTTATTTGCAAT+TGG - chr4.2:46144734-46144753 MS.gene049790:intron 15.0%
!!! CTAAATATCTCTAAAATTTA+CGG + chr4.2:46143136-46143155 None:intergenic 15.0%
!!! CTTTTTTTTTATTGAATTTC+AGG - chr4.2:46142746-46142765 MS.gene049790:intron 15.0%
!!! TAAAATTTGACTTAATTTTG+TGG - chr4.2:46142700-46142719 MS.gene049790:CDS 15.0%
!!! TGTTACATAATTTTATTAGT+CGG - chr4.2:46142470-46142489 MS.gene049790:CDS 15.0%
!! AAAACAATTTGAATTCAACA+GGG + chr4.2:46144769-46144788 None:intergenic 20.0%
!! AACATTCCAAATATTAATAG+CGG - chr4.2:46142661-46142680 MS.gene049790:CDS 20.0%
!! AATCATTCAATCAAAATTGA+AGG + chr4.2:46142190-46142209 None:intergenic 20.0%
!! ACAAGAATCTCAAATTTATA+TGG + chr4.2:46143182-46143201 None:intergenic 20.0%
!! ATACAAATTTAATTACCTTG+CGG + chr4.2:46142014-46142033 None:intergenic 20.0%
!! ATTATTGACATTATGACTAA+AGG - chr4.2:46143270-46143289 MS.gene049790:intron 20.0%
!! GTATATTATTCAGAACAAAT+CGG + chr4.2:46142445-46142464 None:intergenic 20.0%
!! TAAAACAATTTGAATTCAAC+AGG + chr4.2:46144770-46144789 None:intergenic 20.0%
!! TGATAACAAAATGATTACAA+AGG - chr4.2:46144026-46144045 MS.gene049790:intron 20.0%
!! TTGTTAAAAAAAATGTCATG+TGG - chr4.2:46142346-46142365 MS.gene049790:CDS 20.0%
!!! ATTCAAATTGTTTTAGCAAT+TGG - chr4.2:46144775-46144794 MS.gene049790:intron 20.0%
!!! CAAACTTATTTTATTTGGAT+TGG - chr4.2:46144294-46144313 MS.gene049790:intron 20.0%
! AAGAATGACTTCTATATTAC+TGG - chr4.2:46143571-46143590 MS.gene049790:intron 25.0%
! AAGTCATTCTTAACAAACTT+AGG + chr4.2:46143562-46143581 None:intergenic 25.0%
! AGTATAGTATACACAACATT+TGG + chr4.2:46143479-46143498 None:intergenic 25.0%
! AGTCATTCTTAACAAACTTA+GGG + chr4.2:46143561-46143580 None:intergenic 25.0%
! ATAAGCTAAATTGATCAAGT+TGG + chr4.2:46144817-46144836 None:intergenic 25.0%
! ATGTGACTATATAGATCTTA+AGG - chr4.2:46142507-46142526 MS.gene049790:CDS 25.0%
! ATTAAGGTTCTTATATATGC+TGG - chr4.2:46144709-46144728 MS.gene049790:intron 25.0%
! ATTACTTACATTAACGTTAC+CGG + chr4.2:46144398-46144417 None:intergenic 25.0%
! ATTATATTAACTGGATCCTT+TGG + chr4.2:46141851-46141870 None:intergenic 25.0%
! CCATTGTTTATGATTATGAT+AGG - chr4.2:46143876-46143895 MS.gene049790:intron 25.0%
! CCTATCATAATCATAAACAA+TGG + chr4.2:46143879-46143898 None:intergenic 25.0%
! GATCCAGTTAATATAATTCA+TGG - chr4.2:46141854-46141873 MS.gene049790:intron 25.0%
! TCAATCAAAATTGAAGGAAT+CGG + chr4.2:46142184-46142203 None:intergenic 25.0%
! TCACCATGAATTATATTAAC+TGG + chr4.2:46141860-46141879 None:intergenic 25.0%
! TCACCTTAAGGTTAATAAAT+GGG - chr4.2:46144889-46144908 MS.gene049790:intron 25.0%
! TGAATTTGTGAAATGAAGTT+AGG - chr4.2:46142256-46142275 MS.gene049790:intron 25.0%
! TTAAGGTTCTTATATATGCT+GGG - chr4.2:46144710-46144729 MS.gene049790:intron 25.0%
! TTACTTGTAGTACAATGTTA+TGG + chr4.2:46142535-46142554 None:intergenic 25.0%
! TTCAAACCGCTATTAATATT+TGG + chr4.2:46142670-46142689 None:intergenic 25.0%
! TTCACCTTAAGGTTAATAAA+TGG - chr4.2:46144888-46144907 MS.gene049790:intron 25.0%
! TTGACTATACGAGTAAAAAT+GGG + chr4.2:46144142-46144161 None:intergenic 25.0%
! TTGATTCCAATACAATTACA+GGG - chr4.2:46143937-46143956 MS.gene049790:intron 25.0%
! TTTGACTATACGAGTAAAAA+TGG + chr4.2:46144143-46144162 None:intergenic 25.0%
! TTTGATTCCAATACAATTAC+AGG - chr4.2:46143936-46143955 MS.gene049790:intron 25.0%
!! AACCAAAAATTGAACTGTTT+TGG + chr4.2:46145102-46145121 None:intergenic 25.0%
!! AATAATATTTTGTCCATTGC+CGG - chr4.2:46144376-46144395 MS.gene049790:intron 25.0%
!! ATACGTGGATTAATCTAATT+GGG + chr4.2:46143455-46143474 None:intergenic 25.0%
!! ATCCAAAACAGTTCAATTTT+TGG - chr4.2:46145097-46145116 MS.gene049790:CDS 25.0%
!! GCTATTAATATTTGGAATGT+TGG + chr4.2:46142662-46142681 None:intergenic 25.0%
!! TAAAATTGGTATTGAATTGC+TGG + chr4.2:46143991-46144010 None:intergenic 25.0%
!! TATACGTGGATTAATCTAAT+TGG + chr4.2:46143456-46143475 None:intergenic 25.0%
!!! AAGGTGTTTTTTCATTTTGT+AGG - chr4.2:46143289-46143308 MS.gene049790:intron 25.0%
!!! ACAGTTCAATTTTTGGTTAA+TGG - chr4.2:46145104-46145123 MS.gene049790:CDS 25.0%
!!! ATATCTCTAAAATTTACGGT+CGG + chr4.2:46143132-46143151 None:intergenic 25.0%
!!! ATTTTATTTTCATTTGGGCA+GGG - chr4.2:46145021-46145040 MS.gene049790:intron 25.0%
!!! TATTTTATTTTCATTTGGGC+AGG - chr4.2:46145020-46145039 MS.gene049790:intron 25.0%
AACATTTGATGTCTCTATTG+CGG - chr4.2:46143779-46143798 MS.gene049790:intron 30.0%
AACGAACAATAACAAAAGAG+AGG + chr4.2:46141711-46141730 None:intergenic 30.0%
AAGGAAATAAAGGCAAAAAG+GGG - chr4.2:46143644-46143663 MS.gene049790:CDS 30.0%
ACAATGCATTGTTATATGCA+GGG + chr4.2:46144937-46144956 None:intergenic 30.0%
ATAATGCAATGTTGCAAGAT+TGG - chr4.2:46144641-46144660 MS.gene049790:intron 30.0%
ATAGTACAATTGCACAATTG+CGG - chr4.2:46142077-46142096 MS.gene049790:intron 30.0%
ATATTATTGTGTGGAGTCAA+AGG - chr4.2:46142216-46142235 MS.gene049790:intron 30.0%
ATGCAAACTGAGAGTAAAAT+TGG + chr4.2:46144005-46144024 None:intergenic 30.0%
ATGTTATGTATCGTCAATCA+CGG + chr4.2:46143764-46143783 None:intergenic 30.0%
ATTTAATTACCTTGCGGATT+TGG + chr4.2:46142008-46142027 None:intergenic 30.0%
CAACCCATTTATTAACCTTA+AGG + chr4.2:46144895-46144914 None:intergenic 30.0%
CAAGCATAACTCAATTGATA+GGG + chr4.2:46144960-46144979 None:intergenic 30.0%
CAAGGAAATAAAGGCAAAAA+GGG - chr4.2:46143643-46143662 MS.gene049790:CDS 30.0%
GACATAAGAAAGAAATGTCA+AGG - chr4.2:46144508-46144527 MS.gene049790:intron 30.0%
GACTTTATCAATACTGCATT+TGG - chr4.2:46143801-46143820 MS.gene049790:intron 30.0%
GTGATACATTCACAATATTG+CGG + chr4.2:46142114-46142133 None:intergenic 30.0%
TAAGGTTCTTATATATGCTG+GGG - chr4.2:46144711-46144730 MS.gene049790:intron 30.0%
TCAAGCATAACTCAATTGAT+AGG + chr4.2:46144961-46144980 None:intergenic 30.0%
TCATTGTCAATCAATGTCTT+TGG + chr4.2:46143221-46143240 None:intergenic 30.0%
TCTAAACAAGAAGAGAGTTA+GGG - chr4.2:46144567-46144586 MS.gene049790:intron 30.0%
TGATTTATGTGATGTGTAAC+AGG - chr4.2:46145259-46145278 MS.gene049790:CDS 30.0%
TTCTAAACAAGAAGAGAGTT+AGG - chr4.2:46144566-46144585 MS.gene049790:intron 30.0%
TTGGTTAATGGTAAAAAAGC+AGG - chr4.2:46145116-46145135 MS.gene049790:CDS 30.0%
TTGTTGTGCAATACACTATT+TGG - chr4.2:46144197-46144216 MS.gene049790:CDS 30.0%
! AAGCTTTAACTTATTGCCAA+AGG - chr4.2:46141832-46141851 MS.gene049790:intron 30.0%
! GACACTGTTGATTAAACTTT+AGG - chr4.2:46145230-46145249 MS.gene049790:CDS 30.0%
! GGTTTGATAAGAGTGTAAAA+GGG + chr4.2:46144121-46144140 None:intergenic 30.0%
! TATTGATTATCTGTTCGCAT+TGG + chr4.2:46144360-46144379 None:intergenic 30.0%
! TTTTTGTTCAAGTAGTCTAG+TGG - chr4.2:46144859-46144878 MS.gene049790:intron 30.0%
! TTTTTGTTGACCAACCAATT+GGG - chr4.2:46143324-46143343 MS.gene049790:intron 30.0%
!! GATTTTATTTGCAATTGGCT+TGG - chr4.2:46144739-46144758 MS.gene049790:intron 30.0%
!!! CTAGCTTTGTTTTATGAGAA+TGG - chr4.2:46142859-46142878 MS.gene049790:intron 30.0%
!!! TTTACGACGGTTTTAAATTG+TGG - chr4.2:46142994-46143013 MS.gene049790:CDS 30.0%
ACTTCTTGAGGATGGAATTA+AGG - chr4.2:46144693-46144712 MS.gene049790:intron 35.0%
AGTGGTTAGAATTCACCTTA+AGG - chr4.2:46144877-46144896 MS.gene049790:intron 35.0%
ATCTTCAATAGAAGGACCAT+CGG + chr4.2:46141948-46141967 None:intergenic 35.0%
ATTACTGGAGAATCATATGC+TGG - chr4.2:46143586-46143605 MS.gene049790:intron 35.0%
CAATGCATTGTTATATGCAG+GGG + chr4.2:46144936-46144955 None:intergenic 35.0%
CCAAGGAAATAAAGGCAAAA+AGG - chr4.2:46143642-46143661 MS.gene049790:CDS 35.0%
GACAATGCATTGTTATATGC+AGG + chr4.2:46144938-46144957 None:intergenic 35.0%
GATATTCCACATGATGAAAC+TGG - chr4.2:46143377-46143396 MS.gene049790:intron 35.0%
GCAAAACCCTGTAATTGTAT+TGG + chr4.2:46143946-46143965 None:intergenic 35.0%
GCAGGATTGTTGAATAGTTA+TGG - chr4.2:46145134-46145153 MS.gene049790:CDS 35.0%
GGACAAAATGATCAATAGAG+TGG + chr4.2:46141883-46141902 None:intergenic 35.0%
TACACAACATTTGGTATACG+TGG + chr4.2:46143470-46143489 None:intergenic 35.0%
TAGGACATTGTATAACCTTG+AGG + chr4.2:46143681-46143700 None:intergenic 35.0%
TCACAAATCGCGAAAAATAG+TGG + chr4.2:46144270-46144289 None:intergenic 35.0%
! CTAACCTTTAGAAAAGAGAG+AGG + chr4.2:46145161-46145180 None:intergenic 35.0%
! CTTTTTGTTGACCAACCAAT+TGG - chr4.2:46143323-46143342 MS.gene049790:intron 35.0%
! GGGTTTGATAAGAGTGTAAA+AGG + chr4.2:46144122-46144141 None:intergenic 35.0%
! TATCTGTTCGCATTGGTATA+AGG + chr4.2:46144353-46144372 None:intergenic 35.0%
! TCGAACATAAGCATTGCTTT+CGG + chr4.2:46142395-46142414 None:intergenic 35.0%
! TCTATTGATCATTTTGTCCC+TGG - chr4.2:46141884-46141903 MS.gene049790:intron 35.0%
! TCTTGTACCGCAAGTTTTTA+CGG + chr4.2:46144097-46144116 None:intergenic 35.0%
! TGATTTGTATGACTTCTTGC+AGG - chr4.2:46143409-46143428 MS.gene049790:CDS 35.0%
! TTATAAGCTTTTCAGCTCGT+TGG + chr4.2:46141811-46141830 None:intergenic 35.0%
! TTGGATGAGAAACTTTGAAG+TGG - chr4.2:46144660-46144679 MS.gene049790:intron 35.0%
! TTGGTATTGAATTGCTGGAT+TGG + chr4.2:46143986-46144005 None:intergenic 35.0%
! TTGTGTCATGAGTTTTACGA+CGG - chr4.2:46142981-46143000 MS.gene049790:CDS 35.0%
!! AGGTTAATAAATGGGTTGTC+TGG - chr4.2:46144897-46144916 MS.gene049790:intron 35.0%
!! CAATTACAGGGTTTTGCTAT+TGG - chr4.2:46143949-46143968 MS.gene049790:intron 35.0%
!! CCTTTTTGCCTTTATTTCCT+TGG + chr4.2:46143645-46143664 None:intergenic 35.0%
!! GGTTAATAAATGGGTTGTCT+GGG - chr4.2:46144898-46144917 MS.gene049790:intron 35.0%
!! GTTAATAAATGGGTTGTCTG+GGG - chr4.2:46144899-46144918 MS.gene049790:intron 35.0%
!!! AGGGTTTTGCTATTGGTAAT+GGG - chr4.2:46143956-46143975 MS.gene049790:intron 35.0%
!!! CGTTGGTTTGGTGAAAATTT+TGG + chr4.2:46141794-46141813 None:intergenic 35.0%
!!! GGTGAAAATTTTGGTGTTGA+TGG + chr4.2:46141785-46141804 None:intergenic 35.0%
AAAAGCTGCACTTCAGATGT+TGG - chr4.2:46145319-46145338 MS.gene049790:CDS 40.0%
AAGAGAGTTAGGGATGCTTT+AGG - chr4.2:46144577-46144596 MS.gene049790:intron 40.0%
ACTCGTATAGTCAAATAGCG+CGG - chr4.2:46144148-46144167 MS.gene049790:CDS 40.0%
AGGGTTCACCAAGGAAATAA+AGG - chr4.2:46143634-46143653 MS.gene049790:CDS 40.0%
AGTCAACCATATCACAACTG+GGG + chr4.2:46142815-46142834 None:intergenic 40.0%
ATTCCATCCTCAAGAAGTTC+AGG + chr4.2:46144691-46144710 None:intergenic 40.0%
ATTCCTGAACTTCTTGAGGA+TGG - chr4.2:46144685-46144704 MS.gene049790:intron 40.0%
CAGTCAACCATATCACAACT+GGG + chr4.2:46142816-46142835 None:intergenic 40.0%
CGTGTGGAATGATTATGGTT+GGG - chr4.2:46142912-46142931 MS.gene049790:intron 40.0%
CTAACACCAGTTTCATCATG+TGG + chr4.2:46143386-46143405 None:intergenic 40.0%
GAATGATTATGGTTGGGACA+AGG - chr4.2:46142918-46142937 MS.gene049790:intron 40.0%
GGATATTCCTGAACTTCTTG+AGG - chr4.2:46144681-46144700 MS.gene049790:intron 40.0%
GGGGATTACTATAAACCTCA+AGG - chr4.2:46143663-46143682 MS.gene049790:CDS 40.0%
GGTCCTTCTATTGAAGATCT+CGG - chr4.2:46141950-46141969 MS.gene049790:CDS 40.0%
GTGATGTGTAACAGGTGAAT+GGG - chr4.2:46145267-46145286 MS.gene049790:CDS 40.0%
TAAAACCTGTCCCAATTGGT+TGG + chr4.2:46143337-46143356 None:intergenic 40.0%
TACATTAACGTTACCGGCAA+TGG + chr4.2:46144392-46144411 None:intergenic 40.0%
TAGCTAAAACCTGTCCCAAT+TGG + chr4.2:46143341-46143360 None:intergenic 40.0%
TCGTGTGGAATGATTATGGT+TGG - chr4.2:46142911-46142930 MS.gene049790:intron 40.0%
TCTCTCGTGTGGAATGATTA+TGG - chr4.2:46142907-46142926 MS.gene049790:intron 40.0%
TGACCGAGATCTTCAATAGA+AGG + chr4.2:46141956-46141975 None:intergenic 40.0%
TGATGTGTAACAGGTGAATG+GGG - chr4.2:46145268-46145287 MS.gene049790:CDS 40.0%
TGTGATGTGTAACAGGTGAA+TGG - chr4.2:46145266-46145285 MS.gene049790:CDS 40.0%
TTGGGCAGGGAATTCAAAAT+GGG - chr4.2:46145034-46145053 MS.gene049790:intron 40.0%
TTTGGGCAGGGAATTCAAAA+TGG - chr4.2:46145033-46145052 MS.gene049790:intron 40.0%
! AATGGGTTCATGCAATGAAG+TGG - chr4.2:46145051-46145070 MS.gene049790:CDS 40.0%
! CAAATAACTTGTCTCTCGTG+TGG - chr4.2:46142896-46142915 MS.gene049790:intron 40.0%
! TCTTCTCGACGATTTTTCCA+GGG + chr4.2:46141904-46141923 None:intergenic 40.0%
! TGGACCTCTCTCTTTTCTAA+AGG - chr4.2:46145154-46145173 MS.gene049790:CDS 40.0%
! TTCTTCTCGACGATTTTTCC+AGG + chr4.2:46141905-46141924 None:intergenic 40.0%
!! AACATCTGAAGTGCAGCTTT+TGG + chr4.2:46145320-46145339 None:intergenic 40.0%
!! CAGCTTTTGGTTGATCCATA+GGG + chr4.2:46145307-46145326 None:intergenic 40.0%
!! TTTGGATTGGCAGAGAGTAA+AGG - chr4.2:46144307-46144326 MS.gene049790:intron 40.0%
!!! CAGGGTTTTGCTATTGGTAA+TGG - chr4.2:46143955-46143974 MS.gene049790:intron 40.0%
!!! CGGTTTTAAATTGTGGTTGC+AGG - chr4.2:46143001-46143020 MS.gene049790:CDS 40.0%
ACGAGGAAGCGAATAGTATC+CGG + chr4.2:46141984-46142003 None:intergenic 45.0%
ATGTTCCTGCTCTTGCATCT+AGG - chr4.2:46143614-46143633 MS.gene049790:intron 45.0%
ATGTTGGCAAACTGGATGCA+AGG - chr4.2:46145335-46145354 MS.gene049790:CDS 45.0%
CACTTCAGATGTTGGCAAAC+TGG - chr4.2:46145327-46145346 MS.gene049790:CDS 45.0%
CATTTGGACCTCGACAAATG+AGG - chr4.2:46143817-46143836 MS.gene049790:intron 45.0%
CCAGTCAACCATATCACAAC+TGG + chr4.2:46142817-46142836 None:intergenic 45.0%
CCAGTTGTGATATGGTTGAC+TGG - chr4.2:46142814-46142833 MS.gene049790:intron 45.0%
GAGGTTGCCGTAAAAACTTG+CGG - chr4.2:46144087-46144106 MS.gene049790:intron 45.0%
GCTTATGTTCGATGAGATCC+AGG - chr4.2:46142403-46142422 MS.gene049790:CDS 45.0%
GTTACGATCCTCATTTGTCG+AGG + chr4.2:46143828-46143847 None:intergenic 45.0%
GTTCATGCAATGAAGTGGTC+AGG - chr4.2:46145056-46145075 MS.gene049790:CDS 45.0%
GTTGTGATATGGTTGACTGG+AGG - chr4.2:46142817-46142836 MS.gene049790:intron 45.0%
TCGATGAGATCCAGGTCAAA+AGG - chr4.2:46142411-46142430 MS.gene049790:CDS 45.0%
TGCATTGTTATATGCAGGGG+CGG + chr4.2:46144933-46144952 None:intergenic 45.0%
TGTTCCTGCTCTTGCATCTA+GGG - chr4.2:46143615-46143634 MS.gene049790:intron 45.0%
! GGTACAACAACCTTTTGACC+TGG + chr4.2:46142424-46142443 None:intergenic 45.0%
! GTTAGGGATGCTTTAGGTGT+TGG - chr4.2:46144583-46144602 MS.gene049790:intron 45.0%
!! AGCTTTTCAGCTCGTTGGTT+TGG + chr4.2:46141806-46141825 None:intergenic 45.0%
!! GCAGCTTTTGGTTGATCCAT+AGG + chr4.2:46145308-46145327 None:intergenic 45.0%
!! TCGTTTTTCAGCGATTCCGA+TGG - chr4.2:46141929-46141948 MS.gene049790:CDS 45.0%
!! ATTCATAATATAAAATTAAT+AGG + chr4.2:46143700-46143719 None:intergenic 5.0%
AGGATGCCCCAGTTGTGATA+TGG - chr4.2:46142806-46142825 MS.gene049790:intron 50.0%
ATATGGTTGACTGGAGGTCC+AGG - chr4.2:46142823-46142842 MS.gene049790:intron 50.0%
CATTGTTATATGCAGGGGCG+GGG + chr4.2:46144931-46144950 None:intergenic 50.0%
GAAGCGAATAGTATCCGGCA+TGG + chr4.2:46141979-46141998 None:intergenic 50.0%
GATGCGAGAAGTTGCGTATG+AGG + chr4.2:46141744-46141763 None:intergenic 50.0%
GCATTGTTATATGCAGGGGC+GGG + chr4.2:46144932-46144951 None:intergenic 50.0%
GTTGACCAACCAATTGGGAC+AGG - chr4.2:46143329-46143348 MS.gene049790:intron 50.0%
TGAACCCTAGATGCAAGAGC+AGG + chr4.2:46143622-46143641 None:intergenic 50.0%
TTACGGCAACCTCGCAATCT+GGG + chr4.2:46144080-46144099 None:intergenic 50.0%
TTCCTCGTTCCAAATCCGCA+AGG - chr4.2:46141996-46142015 MS.gene049790:CDS 50.0%
TTTACGGCAACCTCGCAATC+TGG + chr4.2:46144081-46144100 None:intergenic 50.0%
! CTTGCATCTAGGGTTCACCA+AGG - chr4.2:46143625-46143644 MS.gene049790:intron 50.0%
! TACCTTGCGGATTTGGAACG+AGG + chr4.2:46142001-46142020 None:intergenic 50.0%
!! CAAGTTGATCCCAGATTGCG+AGG - chr4.2:46144068-46144087 MS.gene049790:intron 50.0%
GAAGATCTCGGTCACCATGC+CGG - chr4.2:46141962-46141981 MS.gene049790:CDS 55.0%
GCTAGTTCACTGCTGCAACC+TGG + chr4.2:46142844-46142863 None:intergenic 55.0%
GGCAGGACATATGGTCCCTA+TGG - chr4.2:46145289-46145308 MS.gene049790:CDS 55.0%
GGTGAATGGGGCAGGACATA+TGG - chr4.2:46145280-46145299 MS.gene049790:CDS 55.0%
GTGTAACAGGTGAATGGGGC+AGG - chr4.2:46145272-46145291 MS.gene049790:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 46141692 46145370 46141692 ID=MS.gene049790
chr4.2 mRNA 46141692 46145370 46141692 ID=MS.gene049790.t1;Parent=MS.gene049790
chr4.2 exon 46145045 46145370 46145045 ID=MS.gene049790.t1.exon1;Parent=MS.gene049790.t1
chr4.2 CDS 46145045 46145370 46145045 ID=cds.MS.gene049790.t1;Parent=MS.gene049790.t1
chr4.2 exon 46144123 46144294 46144123 ID=MS.gene049790.t1.exon2;Parent=MS.gene049790.t1
chr4.2 CDS 46144123 46144294 46144123 ID=cds.MS.gene049790.t1;Parent=MS.gene049790.t1
chr4.2 exon 46143632 46143751 46143632 ID=MS.gene049790.t1.exon3;Parent=MS.gene049790.t1
chr4.2 CDS 46143632 46143751 46143632 ID=cds.MS.gene049790.t1;Parent=MS.gene049790.t1
chr4.2 exon 46143378 46143521 46143378 ID=MS.gene049790.t1.exon4;Parent=MS.gene049790.t1
chr4.2 CDS 46143378 46143521 46143378 ID=cds.MS.gene049790.t1;Parent=MS.gene049790.t1
chr4.2 exon 46142954 46143104 46142954 ID=MS.gene049790.t1.exon5;Parent=MS.gene049790.t1
chr4.2 CDS 46142954 46143104 46142954 ID=cds.MS.gene049790.t1;Parent=MS.gene049790.t1
chr4.2 exon 46142654 46142742 46142654 ID=MS.gene049790.t1.exon6;Parent=MS.gene049790.t1
chr4.2 CDS 46142654 46142742 46142654 ID=cds.MS.gene049790.t1;Parent=MS.gene049790.t1
chr4.2 exon 46142302 46142560 46142302 ID=MS.gene049790.t1.exon7;Parent=MS.gene049790.t1
chr4.2 CDS 46142302 46142560 46142302 ID=cds.MS.gene049790.t1;Parent=MS.gene049790.t1
chr4.2 exon 46141887 46142020 46141887 ID=MS.gene049790.t1.exon8;Parent=MS.gene049790.t1
chr4.2 CDS 46141887 46142020 46141887 ID=cds.MS.gene049790.t1;Parent=MS.gene049790.t1
chr4.2 exon 46141692 46141781 46141692 ID=MS.gene049790.t1.exon9;Parent=MS.gene049790.t1
chr4.2 CDS 46141692 46141781 46141692 ID=cds.MS.gene049790.t1;Parent=MS.gene049790.t1
Gene Sequence

>MS.gene049790

ATGGGATTCTCTAAAACCTCTCTTTTGTTATTGTTCGTTTTGTTTTCTTCCTCATACGCAACTTCTCGCATCACACATCATAGAAGTTTTCCATCAACACCAAAATTTTCACCAAACCAACGAGCTGAAAAGCTTATAAAAAGCTTTAACTTATTGCCAAAGGATCCAGTTAATATAATTCATGGTGACCACTCTATTGATCATTTTGTCCCTGGAAAAATCGTCGAGAAGAAGTTCTCGTTTTTCAGCGATTCCGATGGTCCTTCTATTGAAGATCTCGGTCACCATGCCGGATACTATTCGCTTCCTCGTTCCAAATCCGCAAGGTAATTAAATTTGTATTCTTTTTATTGTAGCTATACAAATTTTTACGTGATTTACAATCATAGTACAATTGCACAATTGCGGACTGATTCAGTCCGCAATATTGTGAATGTATCACTTGATGCACTCCGCAATTAAAAATCTTGTATTTTCAAAACTCAAAATCCGATTCCTTCAATTTTGATTGAATGATTCAAAATATATTATTGTGTGGAGTCAAAGGTGTGACAACAATGAATCTGAATTTGTGAAATGAAGTTAGGACTATAGTGACGATGTAAACAGTGTGATTATATATTTTTTTTTATAAAACCATATTTAATTAATTAGTTGTTAAAAAAAATGTCATGTGGTGATGAGTTAAAGTAGTTTGAATCCGAAAGCAATGCTTATGTTCGATGAGATCCAGGTCAAAAGGTTGTTGTACCGATTTGTTCTGAATAATATACTTAGCTGTTACATAATTTTATTAGTCGGTAGTGATATTTTCAATGTGACTATATAGATCTTAAGGAACCATAACATTGTACTACAAGTAACATATTACACGTCATGCACATATAATGATATAATCATTATATCATCATTCATCAAAGCTAATTTGTTTACACAAATGACTCTTGATAATTCTTGAATTTAATAACCAACATTCCAAATATTAATAGCGGTTTGAAATTATATATTTAAAATTTGACTTAATTTTGTGGTCATGAATTGAACTTTATTCTTTCTTTTTTTTTATTGAATTTCAGGATGTTCTATTTTTTCTTTGAATCAAGAAAAAATAATAAGGATGCCCCAGTTGTGATATGGTTGACTGGAGGTCCAGGTTGCAGCAGTGAACTAGCTTTGTTTTATGAGAATGGTCCTTTTAAAATTGCAAATAACTTGTCTCTCGTGTGGAATGATTATGGTTGGGACAAGGTAATAACATTCAATTCTTATGAAATATCTTTGTTTTGATTTTGTGTCATGAGTTTTACGACGGTTTTAAATTGTGGTTGCAGGTGTAGTTACATTGCAAATTTTGATACTAACGTATCAACGACAAATTTAGCTGATGCAGCTACATTTGCAGTTGTGATGTTGTTCTAAATAACTTTAACAGTAAATCCGACCGTAAATTTTAGAGATATTTAGAACAACATCACAACTATGATCAACCATATAAATTTGAGATTCTTGTTGATAAATAGAGCATACCAAAGACATTGATTGACAATGAGAATCAAGTTGTTACACCAAATATGTTTTATTATTGACATTATGACTAAAGGTGTTTTTTCATTTTGTAGGCATCAAATATTCTTTTTGTTGACCAACCAATTGGGACAGGTTTTAGCTACACGTCTAATGAAGATGATATTCCACATGATGAAACTGGTGTTAGCAATGATTTGTATGACTTCTTGCAGGTATATATAAAGTATCATTTTCCCAATTAGATTAATCCACGTATACCAAATGTTGTGTATACTATACTATATGATTAGATTAATTAATTTTTTATTTATAATAATCACAGGAGTTTTTCAAGCAGCACCCTAAGTTTGTTAAGAATGACTTCTATATTACTGGAGAATCATATGCTGGACACTATGTTCCTGCTCTTGCATCTAGGGTTCACCAAGGAAATAAAGGCAAAAAGGGGATTACTATAAACCTCAAGGTTATACAATGTCCTATTAATTTTATATTATGAATTTAGAAACACAAAAATTTGAAAAAATGTTATTTTCTACAATCCGTGATTGACGATACATAACATTTGATGTCTCTATTGCGGACTTTATCAATACTGCATTTGGACCTCGACAAATGAGGATCGTAACGCAACTTTCAATTTTGTGACAACTTAAACCATTGTTTATGATTATGATAGGATTGTTATTTGTTTTTTTCTTGCATGTTTTGATTAAATTTGATTCCAATACAATTACAGGGTTTTGCTATTGGTAATGGGTTGACCAATCCAGCAATTCAATACCAATTTTACTCTCAGTTTGCATTTGATAACAAAATGATTACAAAGGAAGAGCAAGCTGATATCAACAAGTTGATCCCAGATTGCGAGGTTGCCGTAAAAACTTGCGGTACAAGATCCCTTTTACACTCTTATCAAACCCATTTTTACTCGTATAGTCAAATAGCGCGGCTATAGCGTAATAGAATTTGAAGCTATTGTTGTGCAATACACTATTTGGTACAAAATGTTGTCTATGAAAATGTAGTGCGACAAAATTTGAACAAACCACTATTTTTCGCGATTTGTGAATAACAAACTTATTTTATTTGGATTGGCAGAGAGTAAAGGTAGAGAAAGTTGCTCGTCAGCCTTATACCAATGCGAACAGATAATCAATAATATTTTGTCCATTGCCGGTAACGTTAATGTAAGTAATCATGTCTGAAAAAAAAAATTTGATTTTAAATAATTTTTCAGTTAATAGTTTAATTAAATTAAATTGAAATATTGAAAATTGCAGTACTATGACATAAGAAAGAAATGTCAAGGATCATTGTGTTATGACTTCTCAAATTTAGAGAAACTTCTAAACAAGAAGAGAGTTAGGGATGCTTTAGGTGTTGGAGACATAGACTTTGTTTCATGCAGCAAAGAAGTGTATAATGCAATGTTGCAAGATTGGATGAGAAACTTTGAAGTGGATATTCCTGAACTTCTTGAGGATGGAATTAAGGTTCTTATATATGCTGGGGAATTTGATTTTATTTGCAATTGGCTTGGTAAGCCCTGTTGAATTCAAATTGTTTTAGCAATTGGAAAAAATATTGAATCACCAACTTGATCAATTTAGCTTATAAAATTATTAATATGATTTTTTTTTTTGTTCAAGTAGTCTAGTGGTTAGAATTCACCTTAAGGTTAATAAATGGGTTGTCTGGGGTTCGAACCCCGCCCCTGCATATAACAATGCATTGTCCCTATCAATTGAGTTATGCTTGAAGAAATTATTATTATTTAATGTGACAATAATAAATTTGATATTTTATTTTCATTTGGGCAGGGAATTCAAAATGGGTTCATGCAATGAAGTGGTCAGGTCAAAAGAAATTTGCAGCATCCAAAACAGTTCAATTTTTGGTTAATGGTAAAAAAGCAGGATTGTTGAATAGTTATGGACCTCTCTCTTTTCTAAAGGTTAGTTATATAGTTAGTGAAATCATAAACTATAAATGTATTTTTCTTAAACGTGACACTGTTGATTAAACTTTAGGTTAATTTGATTTATGTGATGTGTAACAGGTGAATGGGGCAGGACATATGGTCCCTATGGATCAACCAAAAGCTGCACTTCAGATGTTGGCAAACTGGATGCAAGGAAACTTGAAATAG
Protein sequence

>MS.gene049790.t1

MGFSKTSLLLLFVLFSSSYATSRITHHRSFPSTPKFSPNQRAEKLIKSFNLLPKDPVNIIHGDHSIDHFVPGKIVEKKFSFFSDSDGPSIEDLGHHAGYYSLPRSKSARMFYFFFESRKNNKDAPVVIWLTGGPGCSSELALFYENGPFKIANNLSLVWNDYGWDKASNILFVDQPIGTGFSYTSNEDDIPHDETGVSNDLYDFLQEFFKQHPKFVKNDFYITGESYAGHYVPALASRVHQGNKGKKGITINLKGFAIGNGLTNPAIQYQFYSQFAFDNKMITKEEQADINKLIPDCEVAVKTCESKGRESCSSALYQCEQIINNILSIAGNVNYYDIRKKCQGSLCYDFSNLEKLLNKKRVRDALGVGDIDFVSCSKEVYNAMLQDWMRNFEVDIPELLEDGIKVLIYAGEFDFICNWLGNSKWVHAMKWSGQKKFAASKTVQFLVNGKKAGLLNSYGPLSFLKVNGAGHMVPMDQPKAALQMLANWMQGNLK