AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09162


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09162.t1 MTR_4g057595 95.417 480 22 0 19 498 21 500 0.0 962
MS.gene09162.t1 MTR_4g057585 90.909 495 42 2 1 493 1 494 0.0 929
MS.gene09162.t1 MTR_4g057600 74.597 496 122 2 1 494 1 494 0.0 779
MS.gene09162.t1 MTR_2g095750 65.323 496 162 6 7 497 13 503 0.0 677
MS.gene09162.t1 MTR_2g095730 62.702 496 167 8 9 497 16 500 0.0 627
MS.gene09162.t1 MTR_1g094155 61.677 501 169 6 3 496 7 491 0.0 624
MS.gene09162.t1 MTR_4g057570 64.167 480 158 7 19 493 21 491 0.0 623
MS.gene09162.t1 MTR_1g050545 60.887 496 179 4 7 498 3 487 0.0 604
MS.gene09162.t1 MTR_2g095710 58.963 463 172 8 34 493 35 482 0.0 536
MS.gene09162.t1 MTR_5g097180 33.005 406 255 7 91 489 37 432 3.02e-70 231
MS.gene09162.t1 MTR_4g084710 32.020 406 259 7 91 489 39 434 3.36e-66 221
MS.gene09162.t1 MTR_3g079560 30.913 427 237 14 95 493 92 488 2.61e-55 192
MS.gene09162.t1 MTR_3g079590 29.767 430 238 14 95 493 92 488 2.55e-51 182
MS.gene09162.t1 MTR_3g079570 30.193 414 256 12 95 493 93 488 3.51e-51 182
MS.gene09162.t1 MTR_3g034290 28.163 490 314 12 27 491 10 486 3.85e-50 179
MS.gene09162.t1 MTR_3g079600 29.929 421 252 12 95 493 90 489 4.36e-50 179
MS.gene09162.t1 MTR_3g079630 31.368 424 247 15 95 493 92 496 4.44e-50 179
MS.gene09162.t1 MTR_7g080180 27.922 462 260 12 95 491 42 495 7.72e-50 178
MS.gene09162.t1 MTR_3g434850 30.536 429 244 18 95 491 44 450 9.34e-50 177
MS.gene09162.t1 MTR_8g011350 28.446 457 260 11 95 492 45 493 1.43e-49 177
MS.gene09162.t1 MTR_4g122960 28.378 444 262 13 88 492 46 472 2.62e-48 174
MS.gene09162.t1 MTR_3g079620 29.930 431 258 15 88 493 85 496 7.10e-48 173
MS.gene09162.t1 MTR_4g122950 28.046 435 277 12 88 492 46 474 7.40e-48 172
MS.gene09162.t1 MTR_1g021010 30.184 434 267 12 76 493 71 484 7.94e-48 172
MS.gene09162.t1 MTR_2g063000 29.742 427 250 13 95 491 53 459 2.79e-47 171
MS.gene09162.t1 MTR_1g020090 28.982 452 270 13 67 493 70 495 2.79e-47 171
MS.gene09162.t1 MTR_7g051430 28.139 462 254 11 95 491 44 492 7.08e-47 170
MS.gene09162.t1 MTR_2g062990 30.310 419 256 13 95 491 54 458 7.34e-47 169
MS.gene09162.t1 MTR_5g072570 29.279 444 265 13 88 497 37 465 2.48e-46 168
MS.gene09162.t1 MTR_2g062980 30.024 413 265 12 95 491 54 458 5.52e-46 167
MS.gene09162.t1 MTR_4g089155 28.235 425 273 12 92 491 64 481 7.70e-46 167
MS.gene09162.t1 MTR_3g045770 29.953 424 257 12 97 493 43 453 1.05e-45 166
MS.gene09162.t1 MTR_7g051430 36.220 254 143 4 95 342 44 284 2.70e-45 164
MS.gene09162.t1 MTR_2g449850 28.959 442 252 18 86 491 43 458 3.04e-45 165
MS.gene09162.t1 MTR_3g498755 29.108 426 256 15 97 491 31 441 4.82e-45 164
MS.gene09162.t1 MTR_2g081620 28.770 431 257 13 95 496 55 464 1.61e-44 163
MS.gene09162.t1 MTR_1g040370 30.170 411 247 13 86 491 36 411 1.74e-44 162
MS.gene09162.t1 MTR_1g021020 29.040 427 256 13 88 493 85 485 2.67e-44 163
MS.gene09162.t1 MTR_4g021530 27.719 469 272 15 62 489 23 465 2.78e-44 162
MS.gene09162.t1 MTR_8g099930 27.725 422 266 12 95 489 47 456 2.86e-44 162
MS.gene09162.t1 MTR_3g100420 27.570 428 251 12 107 492 84 494 4.06e-44 162
MS.gene09162.t1 MTR_7g021130 28.704 432 257 17 92 491 41 453 1.62e-43 160
MS.gene09162.t1 MTR_4g021510 27.938 451 286 13 65 488 25 463 3.64e-43 159
MS.gene09162.t1 MTR_1g095560 28.538 424 256 13 95 490 47 451 3.70e-43 159
MS.gene09162.t1 MTR_2g018600 26.777 422 273 9 97 489 50 464 4.64e-43 159
MS.gene09162.t1 MTR_3g090130 28.640 419 269 12 95 491 42 452 4.99e-43 159
MS.gene09162.t1 MTR_3g090150 29.070 430 268 14 88 491 41 459 2.49e-42 157
MS.gene09162.t1 MTR_1g095560 27.716 451 257 15 95 490 47 483 3.08e-42 157
MS.gene09162.t1 MTR_8g011350 27.842 431 244 11 95 466 45 467 3.63e-42 157
MS.gene09162.t1 MTR_2g018590 27.252 433 260 11 96 489 48 464 4.15e-42 156
MS.gene09162.t1 MTR_0003s0560 27.442 430 262 13 87 491 79 483 5.47e-42 156
MS.gene09162.t1 MTR_7g080180 35.521 259 146 6 95 342 42 290 1.32e-41 155
MS.gene09162.t1 MTR_4g021490 29.024 410 249 13 109 489 69 465 2.36e-41 154
MS.gene09162.t1 MTR_2g018630 26.730 419 270 10 97 489 53 460 2.47e-41 154
MS.gene09162.t1 MTR_3g034290 28.501 407 259 10 27 409 10 408 4.86e-41 152
MS.gene09162.t1 MTR_4g021535 27.553 421 241 14 109 489 65 461 4.93e-41 153
MS.gene09162.t1 MTR_7g013790 28.966 435 244 15 97 491 51 460 2.70e-40 151
MS.gene09162.t1 MTR_4g021500 29.327 416 238 13 109 488 69 464 3.45e-40 155
MS.gene09162.t1 MTR_4g021500 26.411 443 281 14 68 489 464 882 1.02e-39 154
MS.gene09162.t1 MTR_4g021500 29.327 416 238 13 109 488 69 464 4.12e-40 155
MS.gene09162.t1 MTR_4g021500 25.482 467 273 14 68 489 464 900 1.60e-37 147
MS.gene09162.t1 MTR_4g021520 28.802 434 244 15 97 489 56 465 4.94e-40 150
MS.gene09162.t1 MTR_2g012850 27.123 424 271 11 95 491 49 461 1.69e-39 149
MS.gene09162.t1 MTR_1g095540 27.419 434 260 15 88 489 40 450 3.01e-39 148
MS.gene09162.t1 MTR_4g075150 29.767 430 247 16 95 489 48 457 7.97e-39 147
MS.gene09162.t1 MTR_4g075150 28.438 429 252 16 95 489 48 455 1.06e-38 147
MS.gene09162.t1 MTR_2g012860 25.346 434 274 10 92 491 52 469 3.62e-38 145
MS.gene09162.t1 MTR_0003s0560 34.762 210 133 4 87 293 79 287 1.16e-34 133
MS.gene09162.t1 MTR_4g056520 25.917 436 271 11 91 487 29 451 1.56e-34 135
MS.gene09162.t1 MTR_2g063000 26.887 424 235 13 95 491 53 428 4.05e-34 134
MS.gene09162.t1 MTR_4g021520 28.967 397 218 14 97 453 56 428 3.14e-33 131
MS.gene09162.t1 MTR_2g009200 23.023 430 242 14 106 490 50 435 4.06e-29 119
MS.gene09162.t1 MTR_2g084530 26.897 435 264 14 91 486 29 448 1.25e-27 115
MS.gene09162.t1 MTR_2g018630 24.859 354 235 9 156 489 13 355 5.96e-25 106
MS.gene09162.t1 MTR_1g102130 23.666 431 242 17 97 491 107 486 5.00e-22 99.4
MS.gene09162.t1 MTR_4g021535 22.556 399 242 11 109 489 65 414 1.54e-21 97.1
MS.gene09162.t1 MTR_0075s0010 40.230 87 44 3 110 189 35 120 1.92e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09162.t1 AT3G45010 62.851 498 171 5 6 494 9 501 0.0 656
MS.gene09162.t1 AT3G10410 62.475 493 175 6 7 493 8 496 0.0 648
MS.gene09162.t1 AT5G22980 61.310 504 180 7 4 498 3 500 0.0 632
MS.gene09162.t1 AT5G22960 58.065 186 58 3 70 254 8 174 1.02e-66 213
MS.gene09162.t1 AT1G15000 31.941 407 257 9 91 491 31 423 3.85e-66 220
MS.gene09162.t1 AT3G25420 28.942 463 248 11 95 491 44 491 1.11e-56 196
MS.gene09162.t1 AT4G12910 28.976 459 253 11 95 492 49 495 2.14e-54 190
MS.gene09162.t1 AT3G52000 29.594 419 264 9 88 490 71 474 4.94e-52 184
MS.gene09162.t1 AT3G52010 29.302 430 255 12 88 490 72 479 4.59e-51 181
MS.gene09162.t1 AT1G73300 27.700 426 271 12 81 491 35 438 6.01e-51 180
MS.gene09162.t1 AT1G73300 27.700 426 271 12 81 491 35 438 6.01e-51 180
MS.gene09162.t1 AT2G22920 29.054 444 273 16 66 492 15 433 6.49e-51 179
MS.gene09162.t1 AT3G12203 28.675 415 252 14 96 491 24 413 1.30e-50 178
MS.gene09162.t1 AT3G12203 28.606 416 253 14 96 492 45 435 2.52e-50 178
MS.gene09162.t1 AT3G12203 29.177 401 240 14 110 491 1 376 9.80e-50 175
MS.gene09162.t1 AT3G52020 30.024 423 260 16 88 490 87 493 1.38e-49 177
MS.gene09162.t1 AT1G73280 27.253 455 279 14 59 492 16 439 1.52e-49 176
MS.gene09162.t1 AT3G17180 30.698 430 258 16 93 491 51 471 2.13e-49 176
MS.gene09162.t1 AT2G23010 27.273 440 287 11 65 491 15 434 2.44e-49 175
MS.gene09162.t1 AT5G08260 32.184 435 238 18 95 489 53 470 4.59e-49 176
MS.gene09162.t1 AT2G23010 27.045 440 288 11 65 491 15 434 8.55e-49 174
MS.gene09162.t1 AT1G73270 27.139 409 265 9 97 491 49 438 1.05e-48 174
MS.gene09162.t1 AT2G22980 27.891 441 265 15 68 489 19 425 1.13e-48 173
MS.gene09162.t1 AT1G73310 27.059 425 275 11 81 491 35 438 1.18e-48 174
MS.gene09162.t1 AT1G73270 27.073 410 266 9 96 491 48 438 1.31e-48 174
MS.gene09162.t1 AT5G36180 27.913 412 260 12 96 491 48 438 3.29e-48 172
MS.gene09162.t1 AT5G23210 31.435 439 243 17 95 489 65 489 2.45e-47 171
MS.gene09162.t1 AT2G22970 27.438 441 275 16 68 491 18 430 3.49e-47 169
MS.gene09162.t1 AT1G73290 26.895 409 268 8 96 492 47 436 5.66e-47 169
MS.gene09162.t1 AT2G35770 27.594 424 269 8 88 489 45 452 1.09e-46 169
MS.gene09162.t1 AT2G22920 30.548 383 231 13 66 432 15 378 1.47e-46 167
MS.gene09162.t1 AT4G15100 29.186 442 261 16 95 498 58 485 1.60e-46 169
MS.gene09162.t1 AT3G63470 29.274 427 242 17 95 490 95 492 3.41e-46 168
MS.gene09162.t1 AT4G12910 29.114 395 213 9 95 429 49 436 5.20e-46 167
MS.gene09162.t1 AT3G10450 27.488 422 267 14 86 491 36 434 6.88e-46 166
MS.gene09162.t1 AT4G30810 27.488 422 272 10 93 492 50 459 2.96e-45 165
MS.gene09162.t1 AT2G22980 28.117 409 243 13 68 458 19 394 8.03e-45 162
MS.gene09162.t1 AT3G07990 27.725 422 274 12 88 489 41 451 8.70e-45 164
MS.gene09162.t1 AT3G10450 27.139 409 261 13 99 491 4 391 1.04e-44 162
MS.gene09162.t1 AT2G22980 28.467 411 239 14 68 458 19 394 1.43e-44 162
MS.gene09162.t1 AT3G12220 29.087 416 254 17 96 493 42 434 1.87e-44 162
MS.gene09162.t1 AT3G12240 28.261 414 258 15 96 492 43 434 2.98e-44 161
MS.gene09162.t1 AT1G73290 28.448 348 225 5 96 432 47 381 3.12e-44 160
MS.gene09162.t1 AT3G12220 29.529 403 243 17 109 493 25 404 1.12e-43 159
MS.gene09162.t1 AT2G24000 29.009 424 262 14 97 492 46 458 2.13e-43 160
MS.gene09162.t1 AT1G73310 27.671 365 236 8 81 432 35 384 3.82e-43 158
MS.gene09162.t1 AT2G22970 28.871 381 233 13 68 432 18 376 5.80e-43 157
MS.gene09162.t1 AT2G22970 28.871 381 233 13 68 432 18 376 9.84e-43 157
MS.gene09162.t1 AT1G61130 28.571 420 269 12 95 491 45 456 1.55e-42 157
MS.gene09162.t1 AT2G12480 28.392 398 266 8 97 491 47 428 1.85e-42 157
MS.gene09162.t1 AT2G12480 28.856 402 260 10 97 491 47 429 2.00e-42 157
MS.gene09162.t1 AT2G22990 26.606 436 265 16 81 491 25 430 2.34e-42 156
MS.gene09162.t1 AT2G22920 32.907 313 180 10 68 368 18 312 2.41e-42 153
MS.gene09162.t1 AT1G73290 36.735 196 118 1 96 285 47 242 2.89e-42 153
MS.gene09162.t1 AT1G28110 27.880 434 254 17 95 492 45 455 2.91e-42 157
MS.gene09162.t1 AT1G28110 27.880 434 254 17 95 492 45 455 2.91e-42 157
MS.gene09162.t1 AT2G23000 26.730 419 258 13 97 491 41 434 3.75e-42 156
MS.gene09162.t1 AT2G23000 26.730 419 258 13 97 491 41 434 3.75e-42 156
MS.gene09162.t1 AT1G33540 27.021 433 264 13 96 491 44 461 6.94e-42 155
MS.gene09162.t1 AT3G12230 28.846 416 253 17 96 492 42 433 1.49e-41 154
MS.gene09162.t1 AT2G12480 28.392 398 265 9 97 491 47 427 1.55e-41 154
MS.gene09162.t1 AT3G10450 28.729 362 226 11 86 432 36 380 1.64e-41 154
MS.gene09162.t1 AT1G11080 28.959 442 249 17 95 491 64 485 1.84e-41 155
MS.gene09162.t1 AT1G11080 28.959 442 249 17 95 491 64 485 2.04e-41 155
MS.gene09162.t1 AT1G43780 29.907 428 253 14 97 491 53 466 2.12e-41 155
MS.gene09162.t1 AT5G23210 40.887 203 115 4 95 292 65 267 2.20e-41 154
MS.gene09162.t1 AT1G33540 26.977 430 262 13 99 491 4 418 2.40e-41 153
MS.gene09162.t1 AT3G02110 27.982 436 252 16 97 491 53 467 3.12e-41 154
MS.gene09162.t1 AT2G35780 27.314 443 271 12 76 489 25 445 3.49e-41 154
MS.gene09162.t1 AT2G24010 28.986 414 263 12 97 491 46 447 6.36e-41 153
MS.gene09162.t1 AT4G30610 29.070 430 259 17 93 491 44 458 6.67e-41 153
MS.gene09162.t1 AT5G42240 29.412 425 262 13 95 491 46 460 8.50e-41 153
MS.gene09162.t1 AT2G33530 27.252 433 260 16 95 492 47 459 1.84e-40 152
MS.gene09162.t1 AT5G42230 28.571 427 263 9 95 491 42 456 2.15e-40 152
MS.gene09162.t1 AT5G42230 28.571 427 263 9 95 491 42 456 2.15e-40 152
MS.gene09162.t1 AT3G10450 28.367 349 220 10 99 432 4 337 2.69e-40 149
MS.gene09162.t1 AT2G12480 27.857 420 265 9 97 491 47 453 3.98e-40 151
MS.gene09162.t1 AT2G22970 38.725 204 111 5 68 264 18 214 9.12e-40 146
MS.gene09162.t1 AT1G73280 30.189 318 201 7 59 368 16 320 9.23e-40 148
MS.gene09162.t1 AT3G12220 36.032 247 141 7 96 326 42 287 1.50e-39 147
MS.gene09162.t1 AT5G09640 25.780 481 267 17 66 491 17 462 1.86e-39 149
MS.gene09162.t1 AT3G17180 31.063 367 219 14 93 429 51 413 3.43e-39 148
MS.gene09162.t1 AT2G22980 30.351 313 185 9 68 368 19 310 4.20e-39 145
MS.gene09162.t1 AT2G05850 26.014 419 282 12 88 489 71 478 4.53e-39 148
MS.gene09162.t1 AT2G22990 26.866 402 241 14 81 458 25 397 2.01e-38 145
MS.gene09162.t1 AT2G22990 26.434 401 244 13 81 458 25 397 4.44e-38 145
MS.gene09162.t1 AT2G24010 27.739 429 264 13 97 491 46 462 3.13e-36 140
MS.gene09162.t1 AT5G23210 30.923 401 219 17 133 489 8 394 6.95e-36 138
MS.gene09162.t1 AT5G23210 30.750 400 219 17 134 489 8 393 3.05e-35 136
MS.gene09162.t1 AT2G22990 25.229 436 262 17 81 491 25 421 1.22e-34 135
MS.gene09162.t1 AT2G27920 27.397 438 257 17 94 486 32 453 1.48e-32 129
MS.gene09162.t1 AT3G56540 40.136 147 85 3 88 232 87 232 8.96e-32 123
MS.gene09162.t1 AT1G73280 26.211 351 218 11 156 491 12 336 1.26e-31 124
MS.gene09162.t1 AT2G24010 26.211 454 264 14 97 491 17 458 1.87e-31 126
MS.gene09162.t1 AT5G36180 26.590 346 223 11 156 491 12 336 1.89e-30 121
MS.gene09162.t1 AT5G36180 26.590 346 223 11 156 491 12 336 1.89e-30 121
MS.gene09162.t1 AT2G24010 33.471 242 137 7 97 318 17 254 2.10e-29 119
MS.gene09162.t1 AT5G23210 41.463 164 91 4 134 292 8 171 2.40e-29 119
MS.gene09162.t1 AT1G73280 24.926 337 212 11 170 491 1 311 1.02e-26 110
MS.gene09162.t1 AT5G36180 26.036 338 215 10 156 475 12 332 6.86e-26 108
MS.gene09162.t1 AT5G36180 27.622 286 183 8 156 432 12 282 7.04e-26 108
MS.gene09162.t1 AT1G73310 27.835 291 176 10 156 432 12 282 1.56e-25 107
MS.gene09162.t1 AT2G27920 26.446 363 216 13 164 486 30 381 1.99e-25 108
MS.gene09162.t1 AT2G22990 24.198 343 213 13 168 491 2 316 4.40e-24 103
MS.gene09162.t1 AT2G22990 23.907 343 214 13 168 491 2 316 1.48e-23 101
MS.gene09162.t1 AT2G22980 25.490 306 183 10 168 458 2 277 5.38e-23 99.4
MS.gene09162.t1 AT2G27920 25.429 350 210 13 177 486 48 386 5.09e-20 92.4

Find 90 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTAATTACCTTGCGGATT+TGG 0.221438 4.3:+43484707 None:intergenic
CGTTGGTTTGGTGAAAATTT+TGG 0.249695 4.3:+43484921 None:intergenic
TCTCTTGTGTGGAATGATTA+TGG 0.249738 4.3:-43483818 MS.gene09162:CDS
TTTGGCCAGGGAATTCAAAA+TGG 0.267534 4.3:-43481679 MS.gene09162:intron
AAGAATGACTTCTATATTAC+TGG 0.289799 4.3:-43483160 MS.gene09162:CDS
CCACACAAGAGACAAGTTAT+TGG 0.301922 4.3:+43483829 None:intergenic
ATGTTCCTGCTCTTGCATCT+AGG 0.318626 4.3:-43483117 MS.gene09162:CDS
CACTTCAGATGTTGGCAAAC+TGG 0.324425 4.3:-43481385 MS.gene09162:CDS
ATTCCATCCTCAAGAAGTTC+AGG 0.338717 4.3:+43482026 None:intergenic
GCAGGATTGTTGAATAGTTA+TGG 0.361275 4.3:-43481578 MS.gene09162:CDS
TTTATGGCAACCTCGCAATC+TGG 0.365782 4.3:+43482635 None:intergenic
TCACCATGAATTATATTAAC+TGG 0.366105 4.3:+43484855 None:intergenic
TTAGGGATGCTTTAGGTGTT+GGG 0.366917 4.3:-43482130 MS.gene09162:CDS
ATTATATTAACTGGATCCTT+TGG 0.371296 4.3:+43484864 None:intergenic
CCAGTCAACCATATCACAAC+TGG 0.373577 4.3:+43483911 None:intergenic
TGATTTGTATGACTTCTTGC+AGG 0.374846 4.3:-43483310 MS.gene09162:intron
AAGACAGTTAGGGATGCTTT+AGG 0.377229 4.3:-43482137 MS.gene09162:CDS
TATGCTTGGTACTGAATTGC+TGG 0.395817 4.3:+43482725 None:intergenic
AAGTCATTCTTAACAAACTT+AGG 0.397900 4.3:+43483172 None:intergenic
TGTTCCTGCTCTTGCATCTA+GGG 0.398381 4.3:-43483116 MS.gene09162:CDS
ATTAAAGTTCTTATATATGC+TGG 0.402158 4.3:-43482005 MS.gene09162:CDS
AACATCTGAAGTGCAGCTTT+TGG 0.416607 4.3:+43481395 None:intergenic
TACATTAACGTTACCGGCAA+TGG 0.417475 4.3:+43482324 None:intergenic
GGATGCATGGGAACTTGAAT+AGG 0.421333 4.3:-43481364 MS.gene09162:CDS
GATCCAGTTAATATAATTCA+TGG 0.424315 4.3:-43484858 MS.gene09162:CDS
TATCTGTTCACATTGTTGTA+AGG 0.425655 4.3:+43482363 None:intergenic
GGTGAATGGGGCAGGACATA+TGG 0.430010 4.3:-43481432 MS.gene09162:CDS
AGTACTTACATTAACGTTAC+CGG 0.431784 4.3:+43482318 None:intergenic
AGTCATTCTTAACAAACTTA+GGG 0.434933 4.3:+43483173 None:intergenic
AGGGTTCACCATGGAAATAA+AGG 0.441831 4.3:-43483097 MS.gene09162:CDS
GTTAGGGATGCTTTAGGTGT+TGG 0.454819 4.3:-43482131 MS.gene09162:CDS
ATAATGCAATGTTGCAAGAT+TGG 0.457321 4.3:-43482073 MS.gene09162:CDS
TTAAAGTTCTTATATATGCT+GGG 0.458726 4.3:-43482004 MS.gene09162:CDS
AGGATGCCCCAGTTGTGATA+TGG 0.462648 4.3:-43483919 MS.gene09162:CDS
GATATTCCACATGATGAAAC+TGG 0.479658 4.3:-43483342 MS.gene09162:CDS
TAGCTAAAACCTGTCCCAAT+TGG 0.482214 4.3:+43483381 None:intergenic
TTATGGCAACCTCGCAATCT+GGG 0.484542 4.3:+43482636 None:intergenic
TGACCGAGATCTTCAATAGA+AGG 0.490638 4.3:+43484759 None:intergenic
GGCAGGACATATGGTCCCTA+TGG 0.494483 4.3:-43481423 MS.gene09162:CDS
TTGGCCAGGGAATTCAAAAT+GGG 0.496576 4.3:-43481678 MS.gene09162:intron
ATGCAAACTGAGAGTATGCT+TGG 0.507916 4.3:+43482711 None:intergenic
ATTCCTGAACTTCTTGAGGA+TGG 0.511069 4.3:-43482029 MS.gene09162:CDS
GTGATGTGTAACAGGTGAAT+GGG 0.514606 4.3:-43481445 MS.gene09162:intron
AAGCTTTAACTTATTGCCAA+AGG 0.518571 4.3:-43484880 MS.gene09162:CDS
ATATGGTTGACTGGAGGTCC+AGG 0.522115 4.3:-43483902 MS.gene09162:CDS
TTGGTACTGAATTGCTGGAT+TGG 0.523254 4.3:+43482730 None:intergenic
ACGAGGAAGCGAATAGTATC+CGG 0.523737 4.3:+43484731 None:intergenic
GTTCATGCAATGAAGTGGTC+AGG 0.523840 4.3:-43481656 MS.gene09162:CDS
TTGTGTGGAATGATTATGGT+TGG 0.526168 4.3:-43483814 MS.gene09162:CDS
TTTGAATTGGCAGAGAGTAA+AGG 0.527254 4.3:-43482406 MS.gene09162:intron
GTTGACCAACCAATTGGGAC+AGG 0.528579 4.3:-43483390 MS.gene09162:CDS
GCTAGTTCACTGCTGCAACC+TGG 0.533445 4.3:+43483884 None:intergenic
GGATATTCCTGAACTTCTTG+AGG 0.534859 4.3:-43482033 MS.gene09162:CDS
AAAAGCTGCACTTCAGATGT+TGG 0.535873 4.3:-43481393 MS.gene09162:CDS
TAGGGATGCTTTAGGTGTTG+GGG 0.537401 4.3:-43482129 MS.gene09162:CDS
TGTGATGTGTAACAGGTGAA+TGG 0.544527 4.3:-43481446 MS.gene09162:intron
GAAGATCTCGGTCACCATGC+CGG 0.547294 4.3:-43484750 MS.gene09162:CDS
CCAGTTGTGATATGGTTGAC+TGG 0.551036 4.3:-43483911 MS.gene09162:CDS
ATTACTGGAGAATCATATGC+TGG 0.551568 4.3:-43483145 MS.gene09162:CDS
GAATTGGCAGAGAGTAAAGG+TGG 0.560172 4.3:-43482403 MS.gene09162:intron
TGTGTGGAATGATTATGGTT+GGG 0.561713 4.3:-43483813 MS.gene09162:CDS
GACATAAGAAAGAAATGTCA+AGG 0.567445 4.3:-43482206 MS.gene09162:CDS
TTGGATGAGAAACTTTGAAG+TGG 0.571105 4.3:-43482054 MS.gene09162:CDS
CCAATAACTTGTCTCTTGTG+TGG 0.572712 4.3:-43483829 MS.gene09162:CDS
CAGTCAACCATATCACAACT+GGG 0.574498 4.3:+43483912 None:intergenic
ATCTTCAATAGAAGGACCAT+CGG 0.575473 4.3:+43484767 None:intergenic
ATGTTGGCAAACTGGATGCA+TGG 0.577839 4.3:-43481377 MS.gene09162:CDS
CTAACACCAGTTTCATCATG+TGG 0.588201 4.3:+43483336 None:intergenic
GATGCGAGAAGTTGCGTATG+AGG 0.589321 4.3:+43484971 None:intergenic
TAAAGTTCTTATATATGCTG+GGG 0.590091 4.3:-43482003 MS.gene09162:CDS
GTGTAACAGGTGAATGGGGC+AGG 0.590576 4.3:-43481440 MS.gene09162:intron
TACCTTGCGGATTTGGAACG+AGG 0.592095 4.3:+43484714 None:intergenic
TAAAACCTGTCCCAATTGGT+TGG 0.592919 4.3:+43483385 None:intergenic
TGATAACAAAATGATTACAA+AGG 0.594810 4.3:-43482687 MS.gene09162:CDS
GGTCCTTCTATTGAAGATCT+CGG 0.595179 4.3:-43484762 MS.gene09162:CDS
CAAGTTGATCCCAGATTGCG+AGG 0.597604 4.3:-43482645 MS.gene09162:CDS
AGGGATTACTATAAACCTCA+AGG 0.608711 4.3:-43483068 MS.gene09162:intron
AATGGGTTCATGCAATGAAG+TGG 0.617006 4.3:-43481661 MS.gene09162:CDS
TGTTGGCAAACTGGATGCAT+GGG 0.618606 4.3:-43481376 MS.gene09162:CDS
TGAACCCTAGATGCAAGAGC+AGG 0.635146 4.3:+43483112 None:intergenic
AACGAACAATAACAAAAGAG+AGG 0.642414 4.3:+43485004 None:intergenic
TTCCTCGTTCCAAATCCGCA+AGG 0.666060 4.3:-43484716 MS.gene09162:intron
CTAACCTTTAGAAAAGAGAG+AGG 0.669936 4.3:+43481554 None:intergenic
GAAGCGAATAGTATCCGGCA+TGG 0.671731 4.3:+43484736 None:intergenic
GAATGATTATGGTTGGGACA+AGG 0.673972 4.3:-43483807 MS.gene09162:intron
ATGGGAACTTGAATAGGACA+AGG 0.685574 4.3:-43481358 MS.gene09162:CDS
TGATGTGTAACAGGTGAATG+GGG 0.699009 4.3:-43481444 MS.gene09162:intron
GTTGTGATATGGTTGACTGG+AGG 0.703410 4.3:-43483908 MS.gene09162:CDS
CTTGCATCTAGGGTTCACCA+TGG 0.722490 4.3:-43483106 MS.gene09162:CDS
AGTCAACCATATCACAACTG+GGG 0.752820 4.3:+43483913 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAACTAATTAATTAAATA+TGG + chr4.3:43481992-43482011 None:intergenic 10.0%
!!! ATTTTATTTATAATAATCAC+AGG - chr4.3:43483160-43483179 MS.gene09162:CDS 10.0%
!! ATTCAAAATATATTATTGTG+TGG - chr4.3:43481867-43481886 MS.gene09162:intron 15.0%
!! TGTCAATAATAAAACATATT+TGG + chr4.3:43482912-43482931 None:intergenic 15.0%
!!! AAATACAAGATTTTTAATTG+TGG + chr4.3:43481807-43481826 None:intergenic 15.0%
!!! AATTCAAATTGTTTTAGTAT+TGG - chr4.3:43484435-43484454 MS.gene09162:intron 15.0%
!!! AATTTGATTTTATTTGCAAT+TGG - chr4.3:43484392-43484411 MS.gene09162:intron 15.0%
!!! CAAACTTATTTTATTTGAAT+TGG - chr4.3:43483953-43483972 MS.gene09162:CDS 15.0%
!!! CTAAATATCTCTAAAATTTA+CGG + chr4.3:43482788-43482807 None:intergenic 15.0%
!!! TAAAATTTGACTTAATTTTG+TGG - chr4.3:43482348-43482367 MS.gene09162:CDS 15.0%
!!! TCTTTTTTTTATTGAATTTC+AGG - chr4.3:43482393-43482412 MS.gene09162:CDS 15.0%
!!! TGTTACATAATTTTATTAGT+CGG - chr4.3:43482131-43482150 MS.gene09162:CDS 15.0%
!! AAAACAATTTGAATTCAAGA+GGG + chr4.3:43484430-43484449 None:intergenic 20.0%
!! AATCATTCAATCAAAATTGA+AGG + chr4.3:43481850-43481869 None:intergenic 20.0%
!! ATACAAATTTAATTACCTTG+CGG + chr4.3:43481674-43481693 None:intergenic 20.0%
!! ATTAAAGTTCTTATATATGC+TGG - chr4.3:43484367-43484386 MS.gene09162:intron 20.0%
!! ATTATTGACATTATGACTAA+AGG - chr4.3:43482922-43482941 MS.gene09162:intron 20.0%
!! GTATATTATTCAGAACAAAT+CGG + chr4.3:43482106-43482125 None:intergenic 20.0%
!! TAAAACAATTTGAATTCAAG+AGG + chr4.3:43484431-43484450 None:intergenic 20.0%
!! TATGCTTCAAGATATTAATT+GGG + chr4.3:43483107-43483126 None:intergenic 20.0%
!! TGAATCAAGAAAAAATTCTA+AGG - chr4.3:43482433-43482452 MS.gene09162:intron 20.0%
!! TGATAACAAAATGATTACAA+AGG - chr4.3:43483685-43483704 MS.gene09162:intron 20.0%
!! TTAAAGTTCTTATATATGCT+GGG - chr4.3:43484368-43484387 MS.gene09162:intron 20.0%
!! TTATGCTTCAAGATATTAAT+TGG + chr4.3:43483108-43483127 None:intergenic 20.0%
!! TTGACAATACTAGTAAAAAT+GGG + chr4.3:43483801-43483820 None:intergenic 20.0%
!! TTGTCTATGATAATATAGTA+CGG - chr4.3:43483888-43483907 MS.gene09162:CDS 20.0%
!! TTGTTAAAAAAAATGTCATG+TGG - chr4.3:43482007-43482026 MS.gene09162:CDS 20.0%
!! TTTCAAACCACTATTAATAT+TGG + chr4.3:43482319-43482338 None:intergenic 20.0%
!! TTTGACAATACTAGTAAAAA+TGG + chr4.3:43483802-43483821 None:intergenic 20.0%
!!! AAGTTATTGGCAATTTTAAA+AGG + chr4.3:43482533-43482552 None:intergenic 20.0%
!!! TTTACAATGGTTTTAAATTG+CGG - chr4.3:43482642-43482661 MS.gene09162:CDS 20.0%
!!! TTTGCTATTTTATTCTCATT+TGG - chr4.3:43484675-43484694 MS.gene09162:intron 20.0%
!!! TTTTTTATCAAGTAGTCTAA+TGG - chr4.3:43484518-43484537 MS.gene09162:intron 20.0%
! AAGAATGACTTCTATATTAC+TGG - chr4.3:43483212-43483231 MS.gene09162:intron 25.0%
! AAGTCATTCTTAACAAACTT+AGG + chr4.3:43483203-43483222 None:intergenic 25.0%
! AGTCATTCTTAACAAACTTA+GGG + chr4.3:43483202-43483221 None:intergenic 25.0%
! ATAAGCTAAATTGATCAAGT+TGG + chr4.3:43484477-43484496 None:intergenic 25.0%
! ATCTAATCATATCGTATATG+TGG + chr4.3:43483132-43483151 None:intergenic 25.0%
! ATGGAAATAAAGGCAAAAAA+GGG - chr4.3:43483285-43483304 MS.gene09162:intron 25.0%
! ATGTGACTATATAGATCTTA+AGG - chr4.3:43482168-43482187 MS.gene09162:CDS 25.0%
! ATTATATTAACTGGATCCTT+TGG + chr4.3:43481511-43481530 None:intergenic 25.0%
! CAACATTCCAATATTAATAG+TGG - chr4.3:43482309-43482328 MS.gene09162:intron 25.0%
! CACTATTAATATTGGAATGT+TGG + chr4.3:43482311-43482330 None:intergenic 25.0%
! CCATTGTTTATGATTATGAT+AGG - chr4.3:43483535-43483554 MS.gene09162:intron 25.0%
! CCTATCATAATCATAAACAA+TGG + chr4.3:43483538-43483557 None:intergenic 25.0%
! GATCCAGTTAATATAATTCA+TGG - chr4.3:43481514-43481533 MS.gene09162:intron 25.0%
! TAAAGTTCTTATATATGCTG+GGG - chr4.3:43484369-43484388 MS.gene09162:intron 25.0%
! TCAATCAAAATTGAAGGAAT+CGG + chr4.3:43481844-43481863 None:intergenic 25.0%
! TCACCATGAATTATATTAAC+TGG + chr4.3:43481520-43481539 None:intergenic 25.0%
! TCTAAACAAAAAGACAGTTA+GGG - chr4.3:43484225-43484244 MS.gene09162:intron 25.0%
! TGAATTTGTGAAATGAAGTT+AGG - chr4.3:43481916-43481935 MS.gene09162:intron 25.0%
! TTACTTGTAGTACAATGTTA+TGG + chr4.3:43482196-43482215 None:intergenic 25.0%
! TTCTAAACAAAAAGACAGTT+AGG - chr4.3:43484224-43484243 MS.gene09162:intron 25.0%
! TTGATTCCAATACAATTACA+GGG - chr4.3:43483596-43483615 MS.gene09162:intron 25.0%
! TTTGATTCCAATACAATTAC+AGG - chr4.3:43483595-43483614 MS.gene09162:intron 25.0%
!! AACCAAAAATTGAACTGTTT+TGG + chr4.3:43484762-43484781 None:intergenic 25.0%
!! AATAATATTTTGTCCATTGC+CGG - chr4.3:43484035-43484054 MS.gene09162:intron 25.0%
!! ATCCAAAACAGTTCAATTTT+TGG - chr4.3:43484757-43484776 MS.gene09162:CDS 25.0%
!!! ACAGTTCAATTTTTGGTTAA+TGG - chr4.3:43484764-43484783 MS.gene09162:CDS 25.0%
!!! AGGTGTTTTTTTCATTTTGT+AGG - chr4.3:43482942-43482961 MS.gene09162:intron 25.0%
!!! ATATCTCTAAAATTTACGGT+CGG + chr4.3:43482784-43482803 None:intergenic 25.0%
AACATTTGATGTCTCTATTG+CGG - chr4.3:43483438-43483457 MS.gene09162:intron 30.0%
AACCCACTTATTAACCTTAA+AGG + chr4.3:43484554-43484573 None:intergenic 30.0%
AACGAACAATAACAAAAGAG+AGG + chr4.3:43481371-43481390 None:intergenic 30.0%
AGTACTTACATTAACGTTAC+CGG + chr4.3:43484057-43484076 None:intergenic 30.0%
ATAATGCAATGTTGCAAGAT+TGG - chr4.3:43484299-43484318 MS.gene09162:intron 30.0%
ATAGTACAATTGCACAATTG+CGG - chr4.3:43481737-43481756 MS.gene09162:intron 30.0%
ATATTATTGTGTGGAGTCAA+AGG - chr4.3:43481876-43481895 MS.gene09162:intron 30.0%
ATGTTATGTATCGTCAATCA+CGG + chr4.3:43483423-43483442 None:intergenic 30.0%
ATTTAATTACCTTGCGGATT+TGG + chr4.3:43481668-43481687 None:intergenic 30.0%
CATGGAAATAAAGGCAAAAA+AGG - chr4.3:43483284-43483303 MS.gene09162:intron 30.0%
GACATAAGAAAGAAATGTCA+AGG - chr4.3:43484166-43484185 MS.gene09162:intron 30.0%
GACTTTATCAATACTGCATT+TGG - chr4.3:43483460-43483479 MS.gene09162:intron 30.0%
GTTTGCTCTATTTATCAACT+TGG + chr4.3:43482851-43482870 None:intergenic 30.0%
TATCTGTTCACATTGTTGTA+AGG + chr4.3:43484012-43484031 None:intergenic 30.0%
TCACAAATCGCAAAAAATAG+CGG + chr4.3:43483929-43483948 None:intergenic 30.0%
TCATTGTCAATCAATGTCTT+TGG + chr4.3:43482873-43482892 None:intergenic 30.0%
TGATTTATGTGATGTGTAAC+AGG - chr4.3:43484919-43484938 MS.gene09162:CDS 30.0%
TGTGTCATATGAGTTTACAA+TGG - chr4.3:43482629-43482648 MS.gene09162:CDS 30.0%
TTGGTTAATGGTAAAAAAGC+AGG - chr4.3:43484776-43484795 MS.gene09162:CDS 30.0%
TTGTTCTGCAATACACTATT+TGG - chr4.3:43483856-43483875 MS.gene09162:CDS 30.0%
! AAGCTTTAACTTATTGCCAA+AGG - chr4.3:43481492-43481511 MS.gene09162:intron 30.0%
! ATTTTATTCTCATTTGGCCA+GGG - chr4.3:43484681-43484700 MS.gene09162:intron 30.0%
! GACACTGTTGATTAAACTTT+AGG - chr4.3:43484890-43484909 MS.gene09162:CDS 30.0%
! TATTTTATTCTCATTTGGCC+AGG - chr4.3:43484680-43484699 MS.gene09162:intron 30.0%
! TTTTTGTTGACCAACCAATT+GGG - chr4.3:43482977-43482996 MS.gene09162:intron 30.0%
!! CACCTTTAAGGTTAATAAGT+GGG - chr4.3:43484549-43484568 MS.gene09162:intron 30.0%
!! GATTTTATTTGCAATTGGCT+TGG - chr4.3:43484397-43484416 MS.gene09162:intron 30.0%
!! TCACCTTTAAGGTTAATAAG+TGG - chr4.3:43484548-43484567 MS.gene09162:intron 30.0%
!!! CTAGCTTTGTTTTATGAGAA+TGG - chr4.3:43482506-43482525 MS.gene09162:intron 30.0%
!!! CTTTTTTGCCTTTATTTCCA+TGG + chr4.3:43483286-43483305 None:intergenic 30.0%
AACAATGCATTGTTACATGC+AGG + chr4.3:43484598-43484617 None:intergenic 35.0%
ACAATGCATTGTTACATGCA+GGG + chr4.3:43484597-43484616 None:intergenic 35.0%
ACTAGTATTGTCAAATAGCG+CGG - chr4.3:43483807-43483826 MS.gene09162:intron 35.0%
AGGGATTACTATAAACCTCA+AGG - chr4.3:43483304-43483323 MS.gene09162:intron 35.0%
ATCTTCAATAGAAGGACCAT+CGG + chr4.3:43481608-43481627 None:intergenic 35.0%
ATGGCTAGAATTCACCTTTA+AGG - chr4.3:43484537-43484556 MS.gene09162:intron 35.0%
ATTACTGGAGAATCATATGC+TGG - chr4.3:43483227-43483246 MS.gene09162:intron 35.0%
CAACATCACAACTGAAATTG+TGG + chr4.3:43482737-43482756 None:intergenic 35.0%
GATATTCCACATGATGAAAC+TGG - chr4.3:43483030-43483049 MS.gene09162:intron 35.0%
GCAAAACCCTGTAATTGTAT+TGG + chr4.3:43483605-43483624 None:intergenic 35.0%
GCAGGATTGTTGAATAGTTA+TGG - chr4.3:43484794-43484813 MS.gene09162:CDS 35.0%
TAGGACATTGTATAACCTTG+AGG + chr4.3:43483322-43483341 None:intergenic 35.0%
TCTCTTGTGTGGAATGATTA+TGG - chr4.3:43482554-43482573 MS.gene09162:intron 35.0%
TGTGTGGAATGATTATGGTT+GGG - chr4.3:43482559-43482578 MS.gene09162:intron 35.0%
TTGTGTGGAATGATTATGGT+TGG - chr4.3:43482558-43482577 MS.gene09162:intron 35.0%
TTTGAATTGGCAGAGAGTAA+AGG - chr4.3:43483966-43483985 MS.gene09162:intron 35.0%
! CTAACCTTTAGAAAAGAGAG+AGG + chr4.3:43484821-43484840 None:intergenic 35.0%
! CTTTTTGTTGACCAACCAAT+TGG - chr4.3:43482976-43482995 MS.gene09162:intron 35.0%
! GGTGTGATAAGAGTGTATAA+TGG + chr4.3:43483780-43483799 None:intergenic 35.0%
! TCGAACATAAGCATTGCTTT+CGG + chr4.3:43482056-43482075 None:intergenic 35.0%
! TCTATTGATCATTTTGTCCC+TGG - chr4.3:43481544-43481563 MS.gene09162:intron 35.0%
! TCTTGTACCGCAAGTTTTTA+TGG + chr4.3:43483756-43483775 None:intergenic 35.0%
! TGATTTGTATGACTTCTTGC+AGG - chr4.3:43483062-43483081 MS.gene09162:intron 35.0%
! TTATAAGCTTTTCAGCTCGT+TGG + chr4.3:43481471-43481490 None:intergenic 35.0%
! TTGGATGAGAAACTTTGAAG+TGG - chr4.3:43484318-43484337 MS.gene09162:intron 35.0%
!! CAATTACAGGGTTTTGCTAT+TGG - chr4.3:43483608-43483627 MS.gene09162:intron 35.0%
!!! AGGGTTTTGCTATTGGTAAT+GGG - chr4.3:43483615-43483634 MS.gene09162:intron 35.0%
!!! CGTTGGTTTGGTGAAAATTT+TGG + chr4.3:43481454-43481473 None:intergenic 35.0%
!!! GGTGAAAATTTTGGTGTTGA+TGG + chr4.3:43481445-43481464 None:intergenic 35.0%
AAAAGCTGCACTTCAGATGT+TGG - chr4.3:43484979-43484998 MS.gene09162:CDS 40.0%
AAGACAGTTAGGGATGCTTT+AGG - chr4.3:43484235-43484254 MS.gene09162:intron 40.0%
AGGGTTCACCATGGAAATAA+AGG - chr4.3:43483275-43483294 MS.gene09162:intron 40.0%
AGTCAACCATATCACAACTG+GGG + chr4.3:43482462-43482481 None:intergenic 40.0%
ATGGGAACTTGAATAGGACA+AGG - chr4.3:43485014-43485033 MS.gene09162:CDS 40.0%
ATTCCATCCTCAAGAAGTTC+AGG + chr4.3:43484349-43484368 None:intergenic 40.0%
ATTCCTGAACTTCTTGAGGA+TGG - chr4.3:43484343-43484362 MS.gene09162:intron 40.0%
CAATGCATTGTTACATGCAG+GGG + chr4.3:43484596-43484615 None:intergenic 40.0%
CAGTCAACCATATCACAACT+GGG + chr4.3:43482463-43482482 None:intergenic 40.0%
CCACACAAGAGACAAGTTAT+TGG + chr4.3:43482546-43482565 None:intergenic 40.0%
CTAACACCAGTTTCATCATG+TGG + chr4.3:43483039-43483058 None:intergenic 40.0%
GAATGATTATGGTTGGGACA+AGG - chr4.3:43482565-43482584 MS.gene09162:intron 40.0%
GAGGTTGCCATAAAAACTTG+CGG - chr4.3:43483746-43483765 MS.gene09162:intron 40.0%
GGATATTCCTGAACTTCTTG+AGG - chr4.3:43484339-43484358 MS.gene09162:intron 40.0%
GGTCCTTCTATTGAAGATCT+CGG - chr4.3:43481610-43481629 MS.gene09162:CDS 40.0%
GTGATGTGTAACAGGTGAAT+GGG - chr4.3:43484927-43484946 MS.gene09162:CDS 40.0%
TAAAACCTGTCCCAATTGGT+TGG + chr4.3:43482990-43483009 None:intergenic 40.0%
TACATTAACGTTACCGGCAA+TGG + chr4.3:43484051-43484070 None:intergenic 40.0%
TAGCTAAAACCTGTCCCAAT+TGG + chr4.3:43482994-43483013 None:intergenic 40.0%
TGACCGAGATCTTCAATAGA+AGG + chr4.3:43481616-43481635 None:intergenic 40.0%
TGATGTGTAACAGGTGAATG+GGG - chr4.3:43484928-43484947 MS.gene09162:CDS 40.0%
TGTGATGTGTAACAGGTGAA+TGG - chr4.3:43484926-43484945 MS.gene09162:CDS 40.0%
TTCTTCGAGCATAGTTCAGT+TGG + chr4.3:43484625-43484644 None:intergenic 40.0%
TTGGCCAGGGAATTCAAAAT+GGG - chr4.3:43484694-43484713 MS.gene09162:intron 40.0%
TTTGGCCAGGGAATTCAAAA+TGG - chr4.3:43484693-43484712 MS.gene09162:intron 40.0%
! AATGGGTTCATGCAATGAAG+TGG - chr4.3:43484711-43484730 MS.gene09162:intron 40.0%
! ATGCAAACTGAGAGTATGCT+TGG + chr4.3:43483664-43483683 None:intergenic 40.0%
! CCAATAACTTGTCTCTTGTG+TGG - chr4.3:43482543-43482562 MS.gene09162:intron 40.0%
! TATGCTTGGTACTGAATTGC+TGG + chr4.3:43483650-43483669 None:intergenic 40.0%
! TCTTCTCGACGATTTTTCCA+GGG + chr4.3:43481564-43481583 None:intergenic 40.0%
! TGAACCCATTTTGAATTCCC+TGG + chr4.3:43484701-43484720 None:intergenic 40.0%
! TGGACCTCTCTCTTTTCTAA+AGG - chr4.3:43484814-43484833 MS.gene09162:CDS 40.0%
! TTAGGGATGCTTTAGGTGTT+GGG - chr4.3:43484242-43484261 MS.gene09162:intron 40.0%
! TTCTTCTCGACGATTTTTCC+AGG + chr4.3:43481565-43481584 None:intergenic 40.0%
! TTGGTACTGAATTGCTGGAT+TGG + chr4.3:43483645-43483664 None:intergenic 40.0%
!! AACATCTGAAGTGCAGCTTT+TGG + chr4.3:43484980-43484999 None:intergenic 40.0%
!! AGGTTAATAAGTGGGTTGTC+CGG - chr4.3:43484557-43484576 MS.gene09162:intron 40.0%
!! CAGCTTTTGGTTGATCCATA+GGG + chr4.3:43484967-43484986 None:intergenic 40.0%
!!! CAGGGTTTTGCTATTGGTAA+TGG - chr4.3:43483614-43483633 MS.gene09162:intron 40.0%
ACGAGGAAGCGAATAGTATC+CGG + chr4.3:43481644-43481663 None:intergenic 45.0%
ATGTTCCTGCTCTTGCATCT+AGG - chr4.3:43483255-43483274 MS.gene09162:intron 45.0%
ATGTTGGCAAACTGGATGCA+TGG - chr4.3:43484995-43485014 MS.gene09162:CDS 45.0%
CACTTCAGATGTTGGCAAAC+TGG - chr4.3:43484987-43485006 MS.gene09162:CDS 45.0%
CATTTGGACCTCGACAAATG+AGG - chr4.3:43483476-43483495 MS.gene09162:intron 45.0%
CCAGTCAACCATATCACAAC+TGG + chr4.3:43482464-43482483 None:intergenic 45.0%
CCAGTTGTGATATGGTTGAC+TGG - chr4.3:43482461-43482480 MS.gene09162:intron 45.0%
GAATTGGCAGAGAGTAAAGG+TGG - chr4.3:43483969-43483988 MS.gene09162:intron 45.0%
GCTTATGTTCGATGAGATCC+AGG - chr4.3:43482064-43482083 MS.gene09162:CDS 45.0%
GGATGCATGGGAACTTGAAT+AGG - chr4.3:43485008-43485027 MS.gene09162:CDS 45.0%
GTTACGATCCTCATTTGTCG+AGG + chr4.3:43483487-43483506 None:intergenic 45.0%
GTTCATGCAATGAAGTGGTC+AGG - chr4.3:43484716-43484735 MS.gene09162:intron 45.0%
GTTGTGATATGGTTGACTGG+AGG - chr4.3:43482464-43482483 MS.gene09162:intron 45.0%
TCGATGAGATCCAGGTCAAA+AGG - chr4.3:43482072-43482091 MS.gene09162:CDS 45.0%
TGTTCCTGCTCTTGCATCTA+GGG - chr4.3:43483256-43483275 MS.gene09162:intron 45.0%
TGTTGGCAAACTGGATGCAT+GGG - chr4.3:43484996-43485015 MS.gene09162:CDS 45.0%
TTATGGCAACCTCGCAATCT+GGG + chr4.3:43483739-43483758 None:intergenic 45.0%
TTTATGGCAACCTCGCAATC+TGG + chr4.3:43483740-43483759 None:intergenic 45.0%
! GGTACAACAACCTTTTGACC+TGG + chr4.3:43482085-43482104 None:intergenic 45.0%
! GTTAGGGATGCTTTAGGTGT+TGG - chr4.3:43484241-43484260 MS.gene09162:intron 45.0%
! TAGGGATGCTTTAGGTGTTG+GGG - chr4.3:43484243-43484262 MS.gene09162:intron 45.0%
!! AGCTTTTCAGCTCGTTGGTT+TGG + chr4.3:43481466-43481485 None:intergenic 45.0%
!! GCAGCTTTTGGTTGATCCAT+AGG + chr4.3:43484968-43484987 None:intergenic 45.0%
!! GGTTAATAAGTGGGTTGTCC+GGG - chr4.3:43484558-43484577 MS.gene09162:intron 45.0%
!! GTTAATAAGTGGGTTGTCCG+GGG - chr4.3:43484559-43484578 MS.gene09162:intron 45.0%
!! TCGTTTTTCAGCGATTCCGA+TGG - chr4.3:43481589-43481608 MS.gene09162:CDS 45.0%
!! ATTCATAATATAAAATTAAT+AGG + chr4.3:43483341-43483360 None:intergenic 5.0%
!!! AAGATAAAATAAATTTTTTT+GGG + chr4.3:43484092-43484111 None:intergenic 5.0%
!!! TAAGATAAAATAAATTTTTT+TGG + chr4.3:43484093-43484112 None:intergenic 5.0%
AGGATGCCCCAGTTGTGATA+TGG - chr4.3:43482453-43482472 MS.gene09162:intron 50.0%
ATATGGTTGACTGGAGGTCC+AGG - chr4.3:43482470-43482489 MS.gene09162:intron 50.0%
GAAGCGAATAGTATCCGGCA+TGG + chr4.3:43481639-43481658 None:intergenic 50.0%
GATGCGAGAAGTTGCGTATG+AGG + chr4.3:43481404-43481423 None:intergenic 50.0%
GTTGACCAACCAATTGGGAC+AGG - chr4.3:43482982-43483001 MS.gene09162:intron 50.0%
TGAACCCTAGATGCAAGAGC+AGG + chr4.3:43483263-43483282 None:intergenic 50.0%
TTCCTCGTTCCAAATCCGCA+AGG - chr4.3:43481656-43481675 MS.gene09162:CDS 50.0%
! CTTGCATCTAGGGTTCACCA+TGG - chr4.3:43483266-43483285 MS.gene09162:intron 50.0%
! TACCTTGCGGATTTGGAACG+AGG + chr4.3:43481661-43481680 None:intergenic 50.0%
!! CAAGTTGATCCCAGATTGCG+AGG - chr4.3:43483727-43483746 MS.gene09162:intron 50.0%
CATTGTTACATGCAGGGGCC+GGG + chr4.3:43484591-43484610 None:intergenic 55.0%
GAAGATCTCGGTCACCATGC+CGG - chr4.3:43481622-43481641 MS.gene09162:CDS 55.0%
GCATTGTTACATGCAGGGGC+CGG + chr4.3:43484592-43484611 None:intergenic 55.0%
GCTAGTTCACTGCTGCAACC+TGG + chr4.3:43482491-43482510 None:intergenic 55.0%
GGCAGGACATATGGTCCCTA+TGG - chr4.3:43484949-43484968 MS.gene09162:CDS 55.0%
GGTGAATGGGGCAGGACATA+TGG - chr4.3:43484940-43484959 MS.gene09162:CDS 55.0%
GTGTAACAGGTGAATGGGGC+AGG - chr4.3:43484932-43484951 MS.gene09162:CDS 55.0%
GGTTGTCCGGGGTTCGAACC+CGG - chr4.3:43484570-43484589 MS.gene09162:intron 65.0%
CAGGGGCCGGGTTCGAACCC+CGG + chr4.3:43484579-43484598 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 43481352 43485042 43481352 ID=MS.gene09162
chr4.3 mRNA 43481352 43485042 43481352 ID=MS.gene09162.t1;Parent=MS.gene09162
chr4.3 exon 43484717 43485042 43484717 ID=MS.gene09162.t1.exon1;Parent=MS.gene09162.t1
chr4.3 CDS 43484717 43485042 43484717 ID=cds.MS.gene09162.t1;Parent=MS.gene09162.t1
chr4.3 exon 43483808 43483979 43483808 ID=MS.gene09162.t1.exon2;Parent=MS.gene09162.t1
chr4.3 CDS 43483808 43483979 43483808 ID=cds.MS.gene09162.t1;Parent=MS.gene09162.t1
chr4.3 exon 43483311 43483430 43483311 ID=MS.gene09162.t1.exon3;Parent=MS.gene09162.t1
chr4.3 CDS 43483311 43483430 43483311 ID=cds.MS.gene09162.t1;Parent=MS.gene09162.t1
chr4.3 exon 43483069 43483212 43483069 ID=MS.gene09162.t1.exon4;Parent=MS.gene09162.t1
chr4.3 CDS 43483069 43483212 43483069 ID=cds.MS.gene09162.t1;Parent=MS.gene09162.t1
chr4.3 exon 43482627 43482777 43482627 ID=MS.gene09162.t1.exon5;Parent=MS.gene09162.t1
chr4.3 CDS 43482627 43482777 43482627 ID=cds.MS.gene09162.t1;Parent=MS.gene09162.t1
chr4.3 exon 43482327 43482415 43482327 ID=MS.gene09162.t1.exon6;Parent=MS.gene09162.t1
chr4.3 CDS 43482327 43482415 43482327 ID=cds.MS.gene09162.t1;Parent=MS.gene09162.t1
chr4.3 exon 43481976 43482234 43481976 ID=MS.gene09162.t1.exon7;Parent=MS.gene09162.t1
chr4.3 CDS 43481976 43482234 43481976 ID=cds.MS.gene09162.t1;Parent=MS.gene09162.t1
chr4.3 exon 43481559 43481692 43481559 ID=MS.gene09162.t1.exon8;Parent=MS.gene09162.t1
chr4.3 CDS 43481559 43481692 43481559 ID=cds.MS.gene09162.t1;Parent=MS.gene09162.t1
chr4.3 exon 43481352 43481453 43481352 ID=MS.gene09162.t1.exon9;Parent=MS.gene09162.t1
chr4.3 CDS 43481352 43481453 43481352 ID=cds.MS.gene09162.t1;Parent=MS.gene09162.t1
Gene Sequence

>MS.gene09162

ATGGGATTCTCTAAAACCTCTCTTTTGTTATTGTTCGTTTTGTTTTCTTCCTCATACGCAACTTCTCGCATCACACATCATAGAAGTTTTCCATCAACACCAAAATTTTCACCAAACCAACGAGCTGAAAAGCTTATAAAAAGCTTTAACTTATTGCCAAAGGATCCAGTTAATATAATTCATGGTGATCACTCTATTGATCATTTTGTCCCTGGAAAAATCGTCGAGAAGAAGTTCTCGTTTTTCAGCGATTCCGATGGTCCTTCTATTGAAGATCTCGGTCACCATGCCGGATACTATTCGCTTCCTCGTTCCAAATCCGCAAGGTAATTAAATTTGTATTCTTTTTATTGTAGCGATACAGATTTTTACGTGATTTACAATCATAGTACAATTGCACAATTGCGGACTGATTCAGTTCGCAATATTGTGAATGTATCACTTGATGCACTCCACAATTAAAAATCTTGTATTTTCAAAACTCAAAATCCGATTCCTTCAATTTTGATTGAATGATTCAAAATATATTATTGTGTGGAGTCAAAGGTGTGACAACAATGAATCTGAATTTGTGAAATGAAGTTAGGACTATAGTGACGATGTAAACAGTGTGATTATATATTTTTTTTTTATAAAACCATATTTAATTAATTAGTTGTTAAAAAAAATGTCATGTGGTGATGAGTTAAAGTAGTTTGAATCCGAAAGCAATGCTTATGTTCGATGAGATCCAGGTCAAAAGGTTGTTGTACCGATTTGTTCTGAATAATATACTTAGCTGTTACATAATTTTATTAGTCGGTAGTGATATTTTCAATGTGACTATATAGATCTTAAGGAACCATAACATTGTACTACAAGTAACATATTACACGTCATGCACATATAATGATATAATCATTATATCATCATATATGTTTACACAAATGACTCTTGATAATTCTTGAATTTAATAACCAACATTCCAATATTAATAGTGGTTTGAAATTATATATTTAAAATTTGACTTAATTTTGTGGTCATGAATTGAACTTTATTCTTTCTTTTTTTTATTGAATTTCAGGATGTTCTATTTTTTCTTTGAATCAAGAAAAAATTCTAAGGATGCCCCAGTTGTGATATGGTTGACTGGAGGTCCAGGTTGCAGCAGTGAACTAGCTTTGTTTTATGAGAATGGTCCTTTTAAAATTGCCAATAACTTGTCTCTTGTGTGGAATGATTATGGTTGGGACAAGGTAATAACATTCAATTCTTTTGAAATATCTTTGTTTTGATTTTGTGTCATATGAGTTTACAATGGTTTTAAATTGCGGTTGCAGTTGTAGTTACATTGCAAACTTTGATACGTTATACTAACGTATAGACAAATTTAGCTGATGCAGCCACAATTTCAGTTGTGATGTTGTTCTAAATAACTCTAATAGTAAATCCGACCGTAAATTTTAGAGATATTTAGAACAACATCACAACTATGATCAATCATATAAAGTTGAGAACCAAGTTGATAAATAGAGCAAACCAAAGACATTGATTGACAATGAGAATCAAGTTGTTACACCAAATATGTTTTATTATTGACATTATGACTAAAGGTGTTTTTTTCATTTTGTAGGCATCAAATATTCTTTTTGTTGACCAACCAATTGGGACAGGTTTTAGCTACACGTCTAATGAAGATGATATTCCACATGATGAAACTGGTGTTAGCAATGATTTGTATGACTTCTTGCAGGTATATATAAATATCATTTTCCCAATTAATATCTTGAAGCATAATCCACATATACGATATGATTAGATTAACTAATATTTTATTTATAATAATCACAGGAGTTTTTCAAGCAGCACCCTAAGTTTGTTAAGAATGACTTCTATATTACTGGAGAATCATATGCTGGACACTATGTTCCTGCTCTTGCATCTAGGGTTCACCATGGAAATAAAGGCAAAAAAGGGATTACTATAAACCTCAAGGTTATACAATGTCCTATTAATTTTATATTATGAATTTAGAAACACAATTTTTATATAGTGTAACAAAATTTGAAAAAATGTTATTTTCTACAATCCGTGATTGACGATACATAACATTTGATGTCTCTATTGCGGACTTTATCAATACTGCATTTGGACCTCGACAAATGAGGATCGTAACGCAACTTTCAATTTTGTGACAACTTAAACCATTGTTTATGATTATGATAGGATTGTTATTTGTTTTTTTCTTGCATGTTTTGATTAAATTTGATTCCAATACAATTACAGGGTTTTGCTATTGGTAATGGGTTGACCAATCCAGCAATTCAGTACCAAGCATACTCTCAGTTTGCATTTGATAACAAAATGATTACAAAGGAAGATCAAACTGATATCAACAAGTTGATCCCAGATTGCGAGGTTGCCATAAAAACTTGCGGTACAAGATCCATTATACACTCTTATCACACCCATTTTTACTAGTATTGTCAAATAGCGCGGCTATAACGTGATAGAATTTGAAGATATTGTTCTGCAATACACTATTTGGTACAAAGTGTTGTCTATGATAATATAGTACGGCAGAATTTGAACAAACCGCTATTTTTTGCGATTTGTGAATAACAAACTTATTTTATTTGAATTGGCAGAGAGTAAAGGTGGAGAAAGTTGCTATTCAGCCTTACAACAATGTGAACAGATAATCAATAATATTTTGTCCATTGCCGGTAACGTTAATGTAAGTACTGCGTAGTCATGTCCCAAAAAAATTTATTTTATCTTAAATAATTTTTCAGCTATAGTTTAATTAAATGCAAATTGAAATTGCAGTACTATGACATAAGAAAGAAATGTCAAGGATCATTGTGTTATGACTTCTCAAATTTAGAGAAACTTCTAAACAAAAAGACAGTTAGGGATGCTTTAGGTGTTGGGGACATAGATTTTGTTTCATGTAGCAAAGAAGTGTATAATGCAATGTTGCAAGATTGGATGAGAAACTTTGAAGTGGATATTCCTGAACTTCTTGAGGATGGAATTAAAGTTCTTATATATGCTGGGGAATTTGATTTTATTTGCAATTGGCTTGGTAAGTGACCCTCTTGAATTCAAATTGTTTTAGTATTGGAAAAATCATTGAATCACCAACTTGATCAATTTAGCTTATAAAATTATTAATATGATTTTTTTTTTTATCAAGTAGTCTAATGGCTAGAATTCACCTTTAAGGTTAATAAGTGGGTTGTCCGGGGTTCGAACCCGGCCCCTGCATGTAACAATGCATTGTTTCTGCCAACTGAACTATGCTCGAAGAAACTATTATTATTTAATGTGACAATAATAAATTTGCTATTTTATTCTCATTTGGCCAGGGAATTCAAAATGGGTTCATGCAATGAAGTGGTCAGGTCAAAAGAAATTTGCAGCATCCAAAACAGTTCAATTTTTGGTTAATGGTAAAAAAGCAGGATTGTTGAATAGTTATGGACCTCTCTCTTTTCTAAAGGTTAGTTATATAGTTAGTGAAATCATAAACTATAAATGTATTTTTCTTAAACTAGACACTGTTGATTAAACTTTAGGTTAATTTGATTTATGTGATGTGTAACAGGTGAATGGGGCAGGACATATGGTCCCTATGGATCAACCAAAAGCTGCACTTCAGATGTTGGCAAACTGGATGCATGGGAACTTGAATAGGACAAGGATTTGA

Protein sequence

>MS.gene09162.t1

MGFSKTSLLLLFVLFSSSYATSRITHHRSFPSTPKFSPNQRAEKLIKSFNLLPKDPVNIIHGDHSIDHFVPGKIVEKKFSFFSDSDGPSIEDLGHHAGYYSLPRSKSARMFYFFFESRKNSKDAPVVIWLTGGPGCSSELALFYENGPFKIANNLSLVWNDYGWDKASNILFVDQPIGTGFSYTSNEDDIPHDETGVSNDLYDFLQEFFKQHPKFVKNDFYITGESYAGHYVPALASRVHHGNKGKKGITINLKGFAIGNGLTNPAIQYQAYSQFAFDNKMITKEDQTDINKLIPDCEVAIKTCESKGGESCYSALQQCEQIINNILSIAGNVNYYDIRKKCQGSLCYDFSNLEKLLNKKTVRDALGVGDIDFVSCSKEVYNAMLQDWMRNFEVDIPELLEDGIKVLIYAGEFDFICNWLGNSKWVHAMKWSGQKKFAASKTVQFLVNGKKAGLLNSYGPLSFLKVNGAGHMVPMDQPKAALQMLANWMHGNLNRTRI