Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050097.t1 | XP_013455978.1 | 97.4 | 698 | 18 | 0 | 42 | 739 | 41 | 738 | 0.00E+00 | 1285.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050097.t1 | Q9FJH9 | 62.0 | 726 | 226 | 16 | 42 | 737 | 33 | 738 | 1.0e-216 | 754.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050097.t1 | A0A072UJT3 | 97.4 | 698 | 18 | 0 | 42 | 739 | 41 | 738 | 0.0e+00 | 1285.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43869 | MS.gene050097 | PPI |
| MS.gene050097 | MS.gene31244 | PPI |
| MS.gene08736 | MS.gene050097 | PPI |
| MS.gene31244 | MS.gene050097 | PPI |
| MS.gene050097 | MS.gene08736 | PPI |
| MS.gene050097 | MS.gene54024 | PPI |
| MS.gene050097 | MS.gene007701 | PPI |
| MS.gene08672 | MS.gene050097 | PPI |
| MS.gene050097 | MS.gene028673 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050097.t1 | MTR_4g057960 | 97.425 | 738 | 15 | 1 | 2 | 739 | 5 | 738 | 0.0 | 1494 |
| MS.gene050097.t1 | MTR_2g095260 | 75.502 | 747 | 144 | 7 | 18 | 737 | 2 | 736 | 0.0 | 1108 |
| MS.gene050097.t1 | MTR_0372s0010 | 97.683 | 259 | 6 | 0 | 67 | 325 | 1 | 259 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050097.t1 | AT5G60760 | 61.722 | 755 | 234 | 16 | 18 | 737 | 4 | 738 | 0.0 | 857 |
| MS.gene050097.t1 | AT3G45090 | 61.725 | 742 | 223 | 13 | 18 | 734 | 5 | 710 | 0.0 | 828 |
| MS.gene050097.t1 | AT3G45090 | 60.028 | 713 | 219 | 13 | 54 | 734 | 13 | 691 | 0.0 | 776 |
| MS.gene050097.t1 | AT5G60760 | 63.570 | 549 | 169 | 13 | 200 | 737 | 1 | 529 | 0.0 | 640 |
Find 167 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAGTACTCTGCAAATTA+TGG | 0.176634 | 4.1:+39790424 | MS.gene050097:CDS |
| TCAGCTGATCCAATCCTTTC+TGG | 0.176923 | 4.1:+39795126 | MS.gene050097:CDS |
| CAAAGCTCGACACGCATTTA+AGG | 0.189656 | 4.1:+39790451 | MS.gene050097:CDS |
| TAAGGAATTGGTCGAGATTT+TGG | 0.226708 | 4.1:-39794942 | None:intergenic |
| AAAGGCTTGGCCTGTAAATT+TGG | 0.250814 | 4.1:+39793821 | MS.gene050097:CDS |
| GTCTCTGATGTCCGTGTATC+AGG | 0.259296 | 4.1:-39793062 | None:intergenic |
| CTTAGGAAACCAATCACTTT+TGG | 0.261997 | 4.1:+39792082 | MS.gene050097:CDS |
| CCTTCAATAGCCATTTGTTT+TGG | 0.270255 | 4.1:-39793113 | None:intergenic |
| TTACCATCAACCAAATTTAC+AGG | 0.301261 | 4.1:-39793831 | None:intergenic |
| CCTGGATTGTTCTGATGTTT+CGG | 0.307423 | 4.1:-39793509 | None:intergenic |
| TCTTGAGATGCCACTGCTAT+TGG | 0.314852 | 4.1:-39794985 | None:intergenic |
| AAACCAAACTGAAGATTTAC+AGG | 0.317941 | 4.1:-39793936 | None:intergenic |
| TCTCTTAGTATTCCTGCATT+AGG | 0.338277 | 4.1:+39795093 | MS.gene050097:CDS |
| AACATTTGTATTGTTTACTT+TGG | 0.338326 | 4.1:-39793568 | None:intergenic |
| CCGGCTCACTTCTAGTTCTA+AGG | 0.341207 | 4.1:-39794960 | None:intergenic |
| ACATTTGTATTGTTTACTTT+GGG | 0.342228 | 4.1:-39793567 | None:intergenic |
| TGTGGTGTAGGACCGGAAAA+TGG | 0.343107 | 4.1:+39793867 | MS.gene050097:CDS |
| ACTTCTCATCATGTGCCTAA+TGG | 0.343567 | 4.1:-39792865 | None:intergenic |
| ATGGAAGATGTGTTGGAAAA+TGG | 0.344836 | 4.1:+39794835 | MS.gene050097:CDS |
| AATGGCTATTGAAGGATATA+AGG | 0.348561 | 4.1:+39793121 | MS.gene050097:CDS |
| AATTTGGATTTGCCATTTGA+TGG | 0.349604 | 4.1:-39795060 | None:intergenic |
| CACTTCTAGTTCTAAGGAAT+TGG | 0.350027 | 4.1:-39794954 | None:intergenic |
| ATCGACGCTGTCTGCAATAC+TGG | 0.360963 | 4.1:+39792664 | MS.gene050097:CDS |
| TCCTTTCGAGCTCAAAGAAT+TGG | 0.363392 | 4.1:-39793724 | None:intergenic |
| CAGAGTACTCTGCAAATTAT+GGG | 0.368373 | 4.1:+39790425 | MS.gene050097:CDS |
| ACTGTTACAGTATTTCTAAC+AGG | 0.370366 | 4.1:-39793669 | None:intergenic |
| CTACCATGCAGGCGAGTGTT+TGG | 0.385707 | 4.1:+39792929 | MS.gene050097:CDS |
| TCACTTCAGGGTAGCAGATT+GGG | 0.389416 | 4.1:+39792816 | MS.gene050097:intron |
| TAAATTTGGTTGATGGTAAT+GGG | 0.393794 | 4.1:+39793835 | MS.gene050097:CDS |
| TTCCGGTCCTACACCACATA+TGG | 0.401890 | 4.1:-39793862 | None:intergenic |
| TTCACTTCAGGGTAGCAGAT+TGG | 0.403232 | 4.1:+39792815 | MS.gene050097:intron |
| TATCCTTGCCCAAAAGTGAT+TGG | 0.403666 | 4.1:-39792091 | None:intergenic |
| GTCTTCGAAGGCGTGAAGCT+GGG | 0.404425 | 4.1:+39793631 | MS.gene050097:CDS |
| GAGCCTGTAAATCTTCAGTT+TGG | 0.408149 | 4.1:+39793933 | MS.gene050097:CDS |
| CAAAGAAGGATAAGCGCAAA+AGG | 0.414489 | 4.1:-39795010 | None:intergenic |
| TGGCCTGTAAATTTGGTTGA+TGG | 0.418803 | 4.1:+39793828 | MS.gene050097:CDS |
| AGATATTGTATGTGATGCTT+TGG | 0.419440 | 4.1:+39792187 | MS.gene050097:CDS |
| GGCGCACTTCTGTATTTGTT+CGG | 0.422429 | 4.1:+39792150 | MS.gene050097:CDS |
| TGTCTTCGAAGGCGTGAAGC+TGG | 0.422623 | 4.1:+39793630 | MS.gene050097:CDS |
| TACTGTAACAGTTGTTTATG+AGG | 0.423133 | 4.1:+39793680 | MS.gene050097:CDS |
| TTCGCTTCAGCAACAGCAAC+CGG | 0.424480 | 4.1:-39792954 | None:intergenic |
| AAGCTTGATGTTGTGGAGCT+TGG | 0.424880 | 4.1:+39794892 | MS.gene050097:CDS |
| GTAAATTTGGTTGATGGTAA+TGG | 0.425265 | 4.1:+39793834 | MS.gene050097:CDS |
| TACGCGTGCTGAAAAGCATT+TGG | 0.438182 | 4.1:+39793542 | MS.gene050097:CDS |
| ATGTGTTGGAAAATGGTTAC+TGG | 0.441151 | 4.1:+39794842 | MS.gene050097:CDS |
| TATCAGACTTCGTGAAAAGA+AGG | 0.441839 | 4.1:+39792598 | MS.gene050097:intron |
| TTTCAATTGATTCAGAGAAA+AGG | 0.449868 | 4.1:+39793750 | MS.gene050097:CDS |
| GTAGTTTCTCTAGAAGACTT+AGG | 0.458125 | 4.1:+39792065 | MS.gene050097:CDS |
| CTTTGTTGATTCCTCGTCTA+CGG | 0.460266 | 4.1:-39794785 | None:intergenic |
| TCGTATCAACGGATTCCATT+AGG | 0.462567 | 4.1:+39792850 | MS.gene050097:CDS |
| ACCATCAGTTGCTTCATCCT+TGG | 0.465058 | 4.1:-39793024 | None:intergenic |
| TTCAAACTAACCTCCTTAGC+GGG | 0.466416 | 4.1:-39794107 | None:intergenic |
| TGCAGGCGAGTGTTTGGATC+CGG | 0.468493 | 4.1:+39792935 | MS.gene050097:CDS |
| AATAATCATGGTGGTGGTGG+TGG | 0.470078 | 4.1:+39790290 | MS.gene050097:CDS |
| CATGATTTACATTACAAATG+AGG | 0.470526 | 4.1:+39793407 | MS.gene050097:CDS |
| TTTGGCCGAGTACAAGTACT+TGG | 0.471055 | 4.1:+39792205 | MS.gene050097:CDS |
| GTAGCTCAAAGAAGAGTTCT+CGG | 0.472331 | 4.1:+39794334 | MS.gene050097:intron |
| TTGATAGGCTAATCACTGCC+TGG | 0.475376 | 4.1:+39793171 | MS.gene050097:CDS |
| TCTAGAGAAACTACTGCGTC+AGG | 0.477664 | 4.1:-39792056 | None:intergenic |
| ACCAAGTCTGCTCTCTGGTT+AGG | 0.481466 | 4.1:-39792230 | None:intergenic |
| TGGTGATTGACAGTCTTGAT+AGG | 0.483565 | 4.1:+39793156 | MS.gene050097:CDS |
| ATGAATAATCATGGTGGTGG+TGG | 0.486953 | 4.1:+39790287 | MS.gene050097:CDS |
| TCCTAACCAGAGAGCAGACT+TGG | 0.487241 | 4.1:+39792229 | MS.gene050097:CDS |
| TTCTAACAGGATCGTATAGC+TGG | 0.489754 | 4.1:-39793656 | None:intergenic |
| CCAAAACAAATGGCTATTGA+AGG | 0.492478 | 4.1:+39793113 | MS.gene050097:CDS |
| CAATCCTCTTATCAATCCTC+TGG | 0.493200 | 4.1:+39794056 | MS.gene050097:CDS |
| ATGGCTATAGTTAATACAGA+TGG | 0.493983 | 4.1:+39793789 | MS.gene050097:CDS |
| GGTATCAGTCCCATCAGCTC+TGG | 0.496720 | 4.1:-39794021 | None:intergenic |
| GTCCATATGTGGTGTAGGAC+CGG | 0.496890 | 4.1:+39793860 | MS.gene050097:CDS |
| CTCTGCTTTACCAATCCGTA+AGG | 0.496973 | 4.1:-39793913 | None:intergenic |
| GAGAAGAAACTACCATCAAA+TGG | 0.497750 | 4.1:+39795048 | MS.gene050097:CDS |
| GAAGGAAAACCCCTTGTTGT+GGG | 0.499021 | 4.1:+39792899 | MS.gene050097:CDS |
| TACAGATGGGTCTGTGGCAA+AGG | 0.500607 | 4.1:+39793803 | MS.gene050097:CDS |
| AGAGCTGATGGGACTGATAC+CGG | 0.500641 | 4.1:+39794023 | MS.gene050097:CDS |
| TGAGGAGCACCAGAAAGGAT+TGG | 0.505269 | 4.1:-39795135 | None:intergenic |
| GCCAATTCTTTGAGCTCGAA+AGG | 0.506088 | 4.1:+39793723 | MS.gene050097:CDS |
| GGAATCGGACATCCAATGTA+TGG | 0.507413 | 4.1:+39793888 | MS.gene050097:CDS |
| TTTGGCGGTATTTAATCCCA+TGG | 0.507498 | 4.1:-39794924 | None:intergenic |
| ATGGGTCTGTGGCAAAGGCT+TGG | 0.513811 | 4.1:+39793808 | MS.gene050097:CDS |
| CTAGAACCAAGTCTGCTCTC+TGG | 0.513854 | 4.1:-39792235 | None:intergenic |
| AAAGACTAAGCTTGATGTTG+TGG | 0.518975 | 4.1:+39794885 | MS.gene050097:CDS |
| GCGGGGAAATCTGATAGCCT+AGG | 0.519195 | 4.1:-39794089 | None:intergenic |
| ATCCAATGTATGGTCCCTTA+CGG | 0.519383 | 4.1:+39793898 | MS.gene050097:CDS |
| TTTGTAATGTAAATCATGAA+TGG | 0.520567 | 4.1:-39793402 | None:intergenic |
| GAGCTTGGAGCTAAAATCCA+TGG | 0.522387 | 4.1:+39794907 | MS.gene050097:CDS |
| AGAATACCCTACTACCTTTG+AGG | 0.524401 | 4.1:-39795153 | None:intergenic |
| CCGAAACATCAGAACAATCC+AGG | 0.525705 | 4.1:+39793509 | MS.gene050097:CDS |
| GCATCCAAGTCCAAAACAAA+TGG | 0.525984 | 4.1:+39793103 | MS.gene050097:CDS |
| TCTTCGAAGGCGTGAAGCTG+GGG | 0.527424 | 4.1:+39793632 | MS.gene050097:CDS |
| CGGGGAAATCTGATAGCCTA+GGG | 0.528419 | 4.1:-39794088 | None:intergenic |
| TCCTTTCTGGTGCTCCTCAA+AGG | 0.529005 | 4.1:+39795139 | MS.gene050097:CDS |
| CAGACTTGGTTCTAGCCTGC+AGG | 0.535130 | 4.1:+39792243 | MS.gene050097:CDS |
| TACCATTCGAGTTGTACAAA+AGG | 0.538198 | 4.1:+39792129 | MS.gene050097:CDS |
| GTTGACGAGTCCAGAGCTGA+TGG | 0.539133 | 4.1:+39794011 | MS.gene050097:CDS |
| CACGCGTACATAGATAATCC+TGG | 0.540422 | 4.1:-39793527 | None:intergenic |
| CAAACACTCGCCTGCATGGT+AGG | 0.540726 | 4.1:-39792928 | None:intergenic |
| TTATGTGGCACTAGTGGATG+TGG | 0.541459 | 4.1:+39792638 | MS.gene050097:CDS |
| TCTTGCAATGGAAGATGTGT+TGG | 0.550255 | 4.1:+39794828 | MS.gene050097:CDS |
| ACCTTTGAGGAGCACCAGAA+AGG | 0.550376 | 4.1:-39795140 | None:intergenic |
| GATTGATGATCAACTAGATG+TGG | 0.555052 | 4.1:+39794376 | MS.gene050097:CDS |
| ACAGCCAGAGGATTGATAAG+AGG | 0.556047 | 4.1:-39794060 | None:intergenic |
| GATGGTGGCACTAGTTATGC+GGG | 0.557473 | 4.1:+39793984 | MS.gene050097:CDS |
| AATATGAATATGAATAATCA+TGG | 0.561238 | 4.1:+39790278 | MS.gene050097:CDS |
| GTAGGACCGGAAAATGGAAT+CGG | 0.563314 | 4.1:+39793873 | MS.gene050097:CDS |
| GCTGAAAACAGTTGCATGGA+TGG | 0.566240 | 4.1:-39793607 | None:intergenic |
| ATCCGTAAGGGACCATACAT+TGG | 0.569972 | 4.1:-39793900 | None:intergenic |
| ATCAGTGCCTGGCCTAGTGA+TGG | 0.571946 | 4.1:+39793966 | MS.gene050097:CDS |
| GGGAAGTCCATATGTGGTGT+AGG | 0.572907 | 4.1:+39793855 | MS.gene050097:CDS |
| GACAGCTGAAAACAGTTGCA+TGG | 0.576375 | 4.1:-39793611 | None:intergenic |
| AAAGAAGAGTTCTCGGTGCA+TGG | 0.576983 | 4.1:+39794341 | MS.gene050097:CDS |
| AGTGCCACCATCACTAGGCC+AGG | 0.578588 | 4.1:-39793973 | None:intergenic |
| CCTTAGAACTAGAAGTGAGC+CGG | 0.578935 | 4.1:+39794960 | MS.gene050097:CDS |
| AAAGAAGGATAAGCGCAAAA+GGG | 0.582519 | 4.1:-39795009 | None:intergenic |
| AGAAGGAAAACCCCTTGTTG+TGG | 0.582553 | 4.1:+39792898 | MS.gene050097:CDS |
| ATGTATGGTCCCTTACGGAT+TGG | 0.583095 | 4.1:+39793903 | MS.gene050097:CDS |
| GGTTGCTGTTGCTGAAGCGA+AGG | 0.584164 | 4.1:+39792956 | MS.gene050097:CDS |
| GTGCTGTTATGTGGCACTAG+TGG | 0.584663 | 4.1:+39792632 | MS.gene050097:CDS |
| TACAAATGAGGAGAAGCACT+TGG | 0.587731 | 4.1:+39793419 | MS.gene050097:CDS |
| AAAACAATCTGTTGTTGTCG+AGG | 0.590052 | 4.1:+39793202 | MS.gene050097:CDS |
| TGGCTATAGTTAATACAGAT+GGG | 0.590086 | 4.1:+39793790 | MS.gene050097:CDS |
| GCTATCAGATTTCCCCGCTA+AGG | 0.590565 | 4.1:+39794094 | MS.gene050097:CDS |
| TGATAGGCTAATCACTGCCT+GGG | 0.593492 | 4.1:+39793172 | MS.gene050097:CDS |
| GTTCAAACTAACCTCCTTAG+CGG | 0.594081 | 4.1:-39794108 | None:intergenic |
| ATCATGAATGGTATGATCGA+CGG | 0.594556 | 4.1:-39793390 | None:intergenic |
| AGGTTCTTCAAGAAATCTGA+TGG | 0.595494 | 4.1:+39793770 | MS.gene050097:CDS |
| CCTCTGGCTGTAGCTCCCCT+AGG | 0.597493 | 4.1:+39794072 | MS.gene050097:CDS |
| TGGGCTTCTACCTACCATGC+AGG | 0.598830 | 4.1:+39792918 | MS.gene050097:CDS |
| ATACAACAAAGTTGAGACTC+AGG | 0.600306 | 4.1:-39793232 | None:intergenic |
| GATCCAAACACTCGCCTGCA+TGG | 0.600442 | 4.1:-39792932 | None:intergenic |
| AGGTAGAAGCCCACAACAAG+GGG | 0.602197 | 4.1:-39792908 | None:intergenic |
| TAACTAGTGCCACCATCACT+AGG | 0.602739 | 4.1:-39793978 | None:intergenic |
| ATATAAGGCGCAGAGTGAGA+TGG | 0.606811 | 4.1:+39793136 | MS.gene050097:CDS |
| ATGCTCAGTAGCACAAGAGC+CGG | 0.609536 | 4.1:-39793084 | None:intergenic |
| AGCTTGGAGCTAAAATCCAT+GGG | 0.613339 | 4.1:+39794908 | MS.gene050097:CDS |
| TTGGCCGAGTACAAGTACTT+GGG | 0.614702 | 4.1:+39792206 | MS.gene050097:CDS |
| AGAGGATTGATATCTACTGC+CGG | 0.614754 | 4.1:-39794042 | None:intergenic |
| TCTGTGACAGTGCTGTTATG+TGG | 0.616174 | 4.1:+39792623 | MS.gene050097:CDS |
| ACTAGATGTGGGTAGTGATG+AGG | 0.619136 | 4.1:+39794388 | MS.gene050097:CDS |
| AAACAATCTGTTGTTGTCGA+GGG | 0.619927 | 4.1:+39793203 | MS.gene050097:CDS |
| TGATGGTGGCACTAGTTATG+CGG | 0.626485 | 4.1:+39793983 | MS.gene050097:CDS |
| ATTGATGATCAACTAGATGT+GGG | 0.626575 | 4.1:+39794377 | MS.gene050097:CDS |
| AATATGAATAATCATGGTGG+TGG | 0.627156 | 4.1:+39790284 | MS.gene050097:CDS |
| GATGCCACTGCTATTGGCAC+CGG | 0.627411 | 4.1:-39794979 | None:intergenic |
| TAGGTAGAAGCCCACAACAA+GGG | 0.628255 | 4.1:-39792909 | None:intergenic |
| AGTTAATACAGATGGGTCTG+TGG | 0.628621 | 4.1:+39793797 | MS.gene050097:CDS |
| TTGACGAGTCCAGAGCTGAT+GGG | 0.638185 | 4.1:+39794012 | MS.gene050097:CDS |
| ACCAAGGATGAAGCAACTGA+TGG | 0.638325 | 4.1:+39793023 | MS.gene050097:CDS |
| ATCAGATTTCCCCGCTAAGG+AGG | 0.638995 | 4.1:+39794097 | MS.gene050097:CDS |
| GCGTGCAAAATATATGACAC+TGG | 0.639092 | 4.1:+39793455 | MS.gene050097:CDS |
| ACTGACAAAGACAAAGACAA+AGG | 0.640541 | 4.1:+39790368 | MS.gene050097:CDS |
| GATACACGGACATCAGAGAC+CGG | 0.644283 | 4.1:+39793065 | MS.gene050097:CDS |
| AATCACGACAGTCGTATCAA+CGG | 0.646353 | 4.1:+39792839 | MS.gene050097:CDS |
| AGGACCCAAGTACTTGTACT+CGG | 0.651459 | 4.1:-39792210 | None:intergenic |
| AGTGCCTGGCCTAGTGATGG+TGG | 0.651998 | 4.1:+39793969 | MS.gene050097:CDS |
| AGAGTACGACGATCTTGCAA+TGG | 0.658407 | 4.1:+39794816 | MS.gene050097:CDS |
| TGAGCCGGTGCCAATAGCAG+TGG | 0.663796 | 4.1:+39794975 | MS.gene050097:CDS |
| GTAGGTAGAAGCCCACAACA+AGG | 0.664341 | 4.1:-39792910 | None:intergenic |
| TCTGCTTTACCAATCCGTAA+GGG | 0.667480 | 4.1:-39793912 | None:intergenic |
| CCTAGGGGAGCTACAGCCAG+AGG | 0.671608 | 4.1:-39794072 | None:intergenic |
| TCAAACTAACCTCCTTAGCG+GGG | 0.679239 | 4.1:-39794106 | None:intergenic |
| TGACAAAGAAGTCGACGATG+AGG | 0.682268 | 4.1:+39794427 | MS.gene050097:CDS |
| GCAGGTTGGATCCGTAGACG+AGG | 0.682602 | 4.1:+39794774 | MS.gene050097:intron |
| TGTGTCACAATCACTTACCA+AGG | 0.687646 | 4.1:+39793007 | MS.gene050097:CDS |
| GGTAATGGGAAGTCCATATG+TGG | 0.693536 | 4.1:+39793849 | MS.gene050097:CDS |
| ATGAATATGAATAATCATGG+TGG | 0.694590 | 4.1:+39790281 | MS.gene050097:CDS |
| ATTCTAGCAAACCTGATACA+CGG | 0.700620 | 4.1:+39793051 | MS.gene050097:CDS |
| GGGGAAATCTGATAGCCTAG+GGG | 0.786166 | 4.1:-39794087 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTTTTTATTTTGTTTAA+AGG | + | chr4.1:39790575-39790594 | MS.gene050097:intron | 10.0% |
| !!! | ATTTAAAATAACAAGAAAAA+AGG | - | chr4.1:39794252-39794271 | None:intergenic | 10.0% |
| !! | AATATGAATATGAATAATCA+TGG | + | chr4.1:39790278-39790297 | MS.gene050097:CDS | 15.0% |
| !! | AATTCAGTAAAAAAAAGAAA+AGG | - | chr4.1:39790871-39790890 | None:intergenic | 15.0% |
| !!! | TGAATTTGATATGAATTTTA+TGG | + | chr4.1:39790885-39790904 | MS.gene050097:intron | 15.0% |
| !!! | TTATTTATATTTTCACTTCA+GGG | + | chr4.1:39792804-39792823 | MS.gene050097:intron | 15.0% |
| !!! | TTGTTATTTAATATTCTTCT+GGG | + | chr4.1:39791074-39791093 | MS.gene050097:intron | 15.0% |
| !!! | TTTATTTATATTTTCACTTC+AGG | + | chr4.1:39792803-39792822 | MS.gene050097:intron | 15.0% |
| !!! | TTTGTTATTTAATATTCTTC+TGG | + | chr4.1:39791073-39791092 | MS.gene050097:intron | 15.0% |
| !! | AACATTTGTATTGTTTACTT+TGG | - | chr4.1:39793571-39793590 | None:intergenic | 20.0% |
| !! | ACATTTGTATTGTTTACTTT+GGG | - | chr4.1:39793570-39793589 | None:intergenic | 20.0% |
| !! | AGAAAGAAAAAAAATAACGA+AGG | - | chr4.1:39793278-39793297 | None:intergenic | 20.0% |
| !! | CTGATAAAAAGAAAATAATC+AGG | - | chr4.1:39792584-39792603 | None:intergenic | 20.0% |
| !! | TTTGTAATGTAAATCATGAA+TGG | - | chr4.1:39793405-39793424 | None:intergenic | 20.0% |
| !!! | AATGTTTAAGATTTATGTTC+AGG | + | chr4.1:39790915-39790934 | MS.gene050097:intron | 20.0% |
| !!! | ACATTTTTTCATATCTTTAC+TGG | + | chr4.1:39792270-39792289 | MS.gene050097:intron | 20.0% |
| !!! | CATTTTTTCATATCTTTACT+GGG | + | chr4.1:39792271-39792290 | MS.gene050097:intron | 20.0% |
| ! | AAATAACAAAACCAAACAAC+AGG | - | chr4.1:39791063-39791082 | None:intergenic | 25.0% |
| ! | AATATCACATTCTATAGTTG+CGG | - | chr4.1:39791649-39791668 | None:intergenic | 25.0% |
| ! | AATGGAATAATGTATTGTAG+TGG | + | chr4.1:39791501-39791520 | MS.gene050097:intron | 25.0% |
| ! | ACAAGAAAAAAGGATAGATA+TGG | - | chr4.1:39794242-39794261 | None:intergenic | 25.0% |
| ! | AGATTATTATTGTTAGTGAC+TGG | - | chr4.1:39793335-39793354 | None:intergenic | 25.0% |
| ! | AGTAAAACAAACCGAAATAA+AGG | - | chr4.1:39791134-39791153 | None:intergenic | 25.0% |
| ! | ATGAATATGAATAATCATGG+TGG | + | chr4.1:39790281-39790300 | MS.gene050097:CDS | 25.0% |
| ! | CAAAAAGAAAGCAAAAAAGA+TGG | + | chr4.1:39792980-39792999 | MS.gene050097:CDS | 25.0% |
| ! | CAAATCTGAAAAAAAGGAAA+TGG | - | chr4.1:39791984-39792003 | None:intergenic | 25.0% |
| ! | CATGATTTACATTACAAATG+AGG | + | chr4.1:39793407-39793426 | MS.gene050097:CDS | 25.0% |
| ! | CCTCATAAAAATTCATAACA+TGG | - | chr4.1:39791581-39791600 | None:intergenic | 25.0% |
| ! | TTTGTGTTCAACATTTAACT+GGG | + | chr4.1:39794144-39794163 | MS.gene050097:intron | 25.0% |
| !! | AAAAGCAAAAGCATATAACA+TGG | - | chr4.1:39792445-39792464 | None:intergenic | 25.0% |
| !! | AAGAGAACGTTTTCTTAATT+TGG | - | chr4.1:39795079-39795098 | None:intergenic | 25.0% |
| !! | ATAGACTAATTTGAAGTTCT+TGG | + | chr4.1:39791849-39791868 | MS.gene050097:intron | 25.0% |
| !! | ATTTGAAGTTCTTGGTTATT+TGG | + | chr4.1:39791857-39791876 | MS.gene050097:intron | 25.0% |
| !! | CCATGTTATGAATTTTTATG+AGG | + | chr4.1:39791578-39791597 | MS.gene050097:intron | 25.0% |
| !! | CTTTTGCAAATCTGAAAAAA+AGG | - | chr4.1:39791990-39792009 | None:intergenic | 25.0% |
| !! | GATAATAAGACTAGTTATTG+CGG | + | chr4.1:39791713-39791732 | MS.gene050097:intron | 25.0% |
| !! | GTTTTTATTACATAGATGAC+CGG | + | chr4.1:39791032-39791051 | MS.gene050097:intron | 25.0% |
| !! | TGTTGGTTAAATTATTTACC+TGG | + | chr4.1:39794466-39794485 | MS.gene050097:intron | 25.0% |
| !! | TTATGAATTTTTATGAGGCA+CGG | + | chr4.1:39791583-39791602 | MS.gene050097:intron | 25.0% |
| !! | TTGTGTTATGTCCTTTATTT+CGG | + | chr4.1:39791120-39791139 | MS.gene050097:intron | 25.0% |
| !! | TTTCAATTGATTCAGAGAAA+AGG | + | chr4.1:39793750-39793769 | MS.gene050097:CDS | 25.0% |
| !! | TTTTGTGTTCAACATTTAAC+TGG | + | chr4.1:39794143-39794162 | MS.gene050097:intron | 25.0% |
| !!! | AATCTTCAGTTTGGTTTTTA+TGG | + | chr4.1:39793942-39793961 | MS.gene050097:CDS | 25.0% |
| !!! | CATCTTTTTTGCTTTCTTTT+TGG | - | chr4.1:39792982-39793001 | None:intergenic | 25.0% |
| !!! | GTAGATTTTTGGTTTTATGT+TGG | + | chr4.1:39794449-39794468 | MS.gene050097:intron | 25.0% |
| !!! | TAAATTTGGTTGATGGTAAT+GGG | + | chr4.1:39793835-39793854 | MS.gene050097:CDS | 25.0% |
| !!! | TCTAGTTTTTACTTATTTCG+TGG | + | chr4.1:39792716-39792735 | MS.gene050097:intron | 25.0% |
| !!! | TTGAGGACATTTTTTGTTTT+TGG | + | chr4.1:39790971-39790990 | MS.gene050097:intron | 25.0% |
| !!! | TTTTGAGGACTTTTTGTTTT+TGG | + | chr4.1:39791007-39791026 | MS.gene050097:intron | 25.0% |
| !!! | TTTTTGTTTTGATTGATCGT+TGG | + | chr4.1:39790507-39790526 | MS.gene050097:intron | 25.0% |
| AAACCAAACTGAAGATTTAC+AGG | - | chr4.1:39793939-39793958 | None:intergenic | 30.0% | |
| AAACCCTTTGAACCATTAAA+GGG | - | chr4.1:39791173-39791192 | None:intergenic | 30.0% | |
| AATATGAATAATCATGGTGG+TGG | + | chr4.1:39790284-39790303 | MS.gene050097:CDS | 30.0% | |
| AATCTGAATAATCATGCAGA+TGG | + | chr4.1:39793350-39793369 | MS.gene050097:intron | 30.0% | |
| AATGGCTATTGAAGGATATA+AGG | + | chr4.1:39793121-39793140 | MS.gene050097:CDS | 30.0% | |
| AATTGTGTACTGAACTCATT+CGG | + | chr4.1:39792480-39792499 | MS.gene050097:intron | 30.0% | |
| AGATATTGTATGTGATGCTT+TGG | + | chr4.1:39792187-39792206 | MS.gene050097:CDS | 30.0% | |
| ATCTGAATAATCATGCAGAT+GGG | + | chr4.1:39793351-39793370 | MS.gene050097:intron | 30.0% | |
| ATCTTTACTGGGCTTATATT+TGG | + | chr4.1:39792282-39792301 | MS.gene050097:intron | 30.0% | |
| ATGGCTATAGTTAATACAGA+TGG | + | chr4.1:39793789-39793808 | MS.gene050097:CDS | 30.0% | |
| ATTATTATCAGTGTTGTGTC+TGG | - | chr4.1:39794609-39794628 | None:intergenic | 30.0% | |
| CTATTGTCCATGTAGTATTT+AGG | - | chr4.1:39791614-39791633 | None:intergenic | 30.0% | |
| GATGAAATGTCTGTATGTAT+GGG | + | chr4.1:39794488-39794507 | MS.gene050097:intron | 30.0% | |
| GTACTATTCAAAACATAGCT+CGG | - | chr4.1:39794567-39794586 | None:intergenic | 30.0% | |
| TACTGTAACAGTTGTTTATG+AGG | + | chr4.1:39793680-39793699 | MS.gene050097:CDS | 30.0% | |
| TAGGATATGCAAGTGTTTAA+TGG | + | chr4.1:39792739-39792758 | MS.gene050097:intron | 30.0% | |
| TGGCTATAGTTAATACAGAT+GGG | + | chr4.1:39793790-39793809 | MS.gene050097:CDS | 30.0% | |
| TTACCATCAACCAAATTTAC+AGG | - | chr4.1:39793834-39793853 | None:intergenic | 30.0% | |
| TTAGTCTAGTGGAAAATTTG+AGG | + | chr4.1:39790954-39790973 | MS.gene050097:intron | 30.0% | |
| ! | AATTTGGATTTGCCATTTGA+TGG | - | chr4.1:39795063-39795082 | None:intergenic | 30.0% |
| ! | ACTGTTACAGTATTTCTAAC+AGG | - | chr4.1:39793672-39793691 | None:intergenic | 30.0% |
| ! | ATTGATGATCAACTAGATGT+GGG | + | chr4.1:39794377-39794396 | MS.gene050097:CDS | 30.0% |
| ! | CAAAAACATATTTCTGACTG+TGG | + | chr4.1:39792318-39792337 | MS.gene050097:intron | 30.0% |
| ! | GTTTTTACTTATTTCGTGGT+AGG | + | chr4.1:39792720-39792739 | MS.gene050097:intron | 30.0% |
| ! | TAAGATTTATGTTCAGGTTC+TGG | + | chr4.1:39790921-39790940 | MS.gene050097:intron | 30.0% |
| ! | TACAATGAGGTTTTTACTCT+CGG | - | chr4.1:39791915-39791934 | None:intergenic | 30.0% |
| ! | TTATATTTGGAATAGAAGCG+AGG | + | chr4.1:39792295-39792314 | MS.gene050097:intron | 30.0% |
| !! | GATTTTAGGTATTAGTCTAG+TGG | + | chr4.1:39790943-39790962 | MS.gene050097:intron | 30.0% |
| !! | GGTGTTTTTGTTACATTTTG+AGG | + | chr4.1:39790992-39791011 | MS.gene050097:intron | 30.0% |
| !! | GTAAATTTGGTTGATGGTAA+TGG | + | chr4.1:39793834-39793853 | MS.gene050097:CDS | 30.0% |
| !! | TTAGGAAACCAATCACTTTT+GGG | + | chr4.1:39792083-39792102 | MS.gene050097:CDS | 30.0% |
| !!! | AATATTTTAGGATGCATGCT+AGG | + | chr4.1:39791779-39791798 | MS.gene050097:intron | 30.0% |
| !!! | TTCACATACTTGTTTTTAGC+AGG | - | chr4.1:39793483-39793502 | None:intergenic | 30.0% |
| AAAACAATCTGTTGTTGTCG+AGG | + | chr4.1:39793202-39793221 | MS.gene050097:CDS | 35.0% | |
| AAACAATCTGTTGTTGTCGA+GGG | + | chr4.1:39793203-39793222 | MS.gene050097:CDS | 35.0% | |
| AAAGAAGGATAAGCGCAAAA+GGG | - | chr4.1:39795012-39795031 | None:intergenic | 35.0% | |
| AAAGACTAAGCTTGATGTTG+TGG | + | chr4.1:39794885-39794904 | MS.gene050097:CDS | 35.0% | |
| AAGAAAGCAAAAAAGATGGC+TGG | + | chr4.1:39792984-39793003 | MS.gene050097:CDS | 35.0% | |
| ACGACTAACAATATCGTTAC+GGG | - | chr4.1:39791286-39791305 | None:intergenic | 35.0% | |
| ACGATTAGATTGTCTTTCCA+TGG | + | chr4.1:39792382-39792401 | MS.gene050097:intron | 35.0% | |
| ACTCCCTTTAATGGTTCAAA+GGG | + | chr4.1:39791167-39791186 | MS.gene050097:intron | 35.0% | |
| ACTGACAAAGACAAAGACAA+AGG | + | chr4.1:39790368-39790387 | MS.gene050097:CDS | 35.0% | |
| AGGTTCTTCAAGAAATCTGA+TGG | + | chr4.1:39793770-39793789 | MS.gene050097:CDS | 35.0% | |
| ATACAACAAAGTTGAGACTC+AGG | - | chr4.1:39793235-39793254 | None:intergenic | 35.0% | |
| ATCAATTTCAATAGCCCAAC+TGG | - | chr4.1:39790745-39790764 | None:intergenic | 35.0% | |
| ATCATGAATGGTATGATCGA+CGG | - | chr4.1:39793393-39793412 | None:intergenic | 35.0% | |
| ATGGAAGATGTGTTGGAAAA+TGG | + | chr4.1:39794835-39794854 | MS.gene050097:CDS | 35.0% | |
| ATGTGTTGGAAAATGGTTAC+TGG | + | chr4.1:39794842-39794861 | MS.gene050097:CDS | 35.0% | |
| ATTCTAGCAAACCTGATACA+CGG | + | chr4.1:39793051-39793070 | MS.gene050097:CDS | 35.0% | |
| ATTTCAGCTTCAACTTCACA+TGG | - | chr4.1:39794529-39794548 | None:intergenic | 35.0% | |
| CAAACCCTTTGAACCATTAA+AGG | - | chr4.1:39791174-39791193 | None:intergenic | 35.0% | |
| CACGACTAACAATATCGTTA+CGG | - | chr4.1:39791287-39791306 | None:intergenic | 35.0% | |
| CCAAAACAAATGGCTATTGA+AGG | + | chr4.1:39793113-39793132 | MS.gene050097:CDS | 35.0% | |
| CCTGCAAAGCAAAATACAAA+AGG | - | chr4.1:39794759-39794778 | None:intergenic | 35.0% | |
| CTTTAATGGTTCAAAGGGTT+TGG | + | chr4.1:39791172-39791191 | MS.gene050097:intron | 35.0% | |
| GAGAAGAAACTACCATCAAA+TGG | + | chr4.1:39795048-39795067 | MS.gene050097:CDS | 35.0% | |
| GCAACAATTACATGAAAGCT+AGG | - | chr4.1:39792423-39792442 | None:intergenic | 35.0% | |
| GCAATCTTGATTCACTTGAA+TGG | + | chr4.1:39791483-39791502 | MS.gene050097:intron | 35.0% | |
| GGATGAAATGTCTGTATGTA+TGG | + | chr4.1:39794487-39794506 | MS.gene050097:intron | 35.0% | |
| GGTAGAACCTAAATACTACA+TGG | + | chr4.1:39791604-39791623 | MS.gene050097:intron | 35.0% | |
| GGTCAAGAAAATGTAAACCA+TGG | - | chr4.1:39792402-39792421 | None:intergenic | 35.0% | |
| TACATACAGACATTTCATCC+AGG | - | chr4.1:39794487-39794506 | None:intergenic | 35.0% | |
| TACTCCCTTTAATGGTTCAA+AGG | + | chr4.1:39791166-39791185 | MS.gene050097:intron | 35.0% | |
| TATCAGACTTCGTGAAAAGA+AGG | + | chr4.1:39792598-39792617 | MS.gene050097:intron | 35.0% | |
| TCAAGTGAATCAAGATTGCT+AGG | - | chr4.1:39791482-39791501 | None:intergenic | 35.0% | |
| TCAATTTCAATAGCCCAACT+GGG | - | chr4.1:39790744-39790763 | None:intergenic | 35.0% | |
| TCTCTTAGTATTCCTGCATT+AGG | + | chr4.1:39795093-39795112 | MS.gene050097:CDS | 35.0% | |
| TCTGAATAATCATGCAGATG+GGG | + | chr4.1:39793352-39793371 | MS.gene050097:intron | 35.0% | |
| TGAAAAAATGTGTTACCTGC+AGG | - | chr4.1:39792261-39792280 | None:intergenic | 35.0% | |
| TGAAGTTGAAGCTGAAATGT+TGG | + | chr4.1:39794531-39794550 | MS.gene050097:intron | 35.0% | |
| ! | CAGAGTACTCTGCAAATTAT+GGG | + | chr4.1:39790425-39790444 | MS.gene050097:CDS | 35.0% |
| ! | CCTTCAATAGCCATTTGTTT+TGG | - | chr4.1:39793116-39793135 | None:intergenic | 35.0% |
| ! | CCTTTTGTATTTTGCTTTGC+AGG | + | chr4.1:39794756-39794775 | MS.gene050097:intron | 35.0% |
| ! | CTTAGGAAACCAATCACTTT+TGG | + | chr4.1:39792082-39792101 | MS.gene050097:CDS | 35.0% |
| ! | GAACTATGTTTTCCTAATGC+AGG | - | chr4.1:39795108-39795127 | None:intergenic | 35.0% |
| ! | GATTGATGATCAACTAGATG+TGG | + | chr4.1:39794376-39794395 | MS.gene050097:CDS | 35.0% |
| ! | GTAGTTTCTCTAGAAGACTT+AGG | + | chr4.1:39792065-39792084 | MS.gene050097:CDS | 35.0% |
| ! | TAAGGAATTGGTCGAGATTT+TGG | - | chr4.1:39794945-39794964 | None:intergenic | 35.0% |
| ! | TACTGTTTTCGAAGCGTAAT+CGG | + | chr4.1:39791808-39791827 | MS.gene050097:intron | 35.0% |
| ! | TTGTATTTTGCTTTGCAGGT+TGG | + | chr4.1:39794760-39794779 | MS.gene050097:intron | 35.0% |
| !! | CACTTCTAGTTCTAAGGAAT+TGG | - | chr4.1:39794957-39794976 | None:intergenic | 35.0% |
| !! | TACCATTCGAGTTGTACAAA+AGG | + | chr4.1:39792129-39792148 | MS.gene050097:CDS | 35.0% |
| !!! | ATAGCCATTTGTTTTGGACT+TGG | - | chr4.1:39793110-39793129 | None:intergenic | 35.0% |
| !!! | ATGTTCAGGTTCTGGATTTT+AGG | + | chr4.1:39790929-39790948 | MS.gene050097:intron | 35.0% |
| !!! | CGGTTTGTTTTACTTTGACT+AGG | + | chr4.1:39791140-39791159 | MS.gene050097:intron | 35.0% |
| !!! | TGAGGACTTTTTGTTTTTGG+TGG | + | chr4.1:39791010-39791029 | MS.gene050097:intron | 35.0% |
| AAAGGCTTGGCCTGTAAATT+TGG | + | chr4.1:39793821-39793840 | MS.gene050097:CDS | 40.0% | |
| AACCAAACAACAGGTCAAAC+CGG | - | chr4.1:39791054-39791073 | None:intergenic | 40.0% | |
| AACTCACACAGACAACTTTG+AGG | - | chr4.1:39791336-39791355 | None:intergenic | 40.0% | |
| AATCACGACAGTCGTATCAA+CGG | + | chr4.1:39792839-39792858 | MS.gene050097:CDS | 40.0% | |
| ACTTCTCATCATGTGCCTAA+TGG | - | chr4.1:39792868-39792887 | None:intergenic | 40.0% | |
| AGAGGATTGATATCTACTGC+CGG | - | chr4.1:39794045-39794064 | None:intergenic | 40.0% | |
| AGATGCATCAAGATAGAGCA+AGG | - | chr4.1:39794219-39794238 | None:intergenic | 40.0% | |
| AGCTTGGAGCTAAAATCCAT+GGG | + | chr4.1:39794908-39794927 | MS.gene050097:CDS | 40.0% | |
| AGTTAATACAGATGGGTCTG+TGG | + | chr4.1:39793797-39793816 | MS.gene050097:CDS | 40.0% | |
| ATCAATTTCAGTAGCCCAAC+TGG | - | chr4.1:39790652-39790671 | None:intergenic | 40.0% | |
| ATCCAATGTATGGTCCCTTA+CGG | + | chr4.1:39793898-39793917 | MS.gene050097:CDS | 40.0% | |
| CAAAGAAGGATAAGCGCAAA+AGG | - | chr4.1:39795013-39795032 | None:intergenic | 40.0% | |
| CAATCCTCTTATCAATCCTC+TGG | + | chr4.1:39794056-39794075 | MS.gene050097:CDS | 40.0% | |
| CAGCATATGCTCTGATGTAA+TGG | + | chr4.1:39792344-39792363 | MS.gene050097:intron | 40.0% | |
| CATTACATCAGAGCATATGC+TGG | - | chr4.1:39792346-39792365 | None:intergenic | 40.0% | |
| CCAAAGTTGTGCTTACAATG+AGG | - | chr4.1:39791928-39791947 | None:intergenic | 40.0% | |
| CCTCATTGTAAGCACAACTT+TGG | + | chr4.1:39791925-39791944 | MS.gene050097:intron | 40.0% | |
| CCTGGATTGTTCTGATGTTT+CGG | - | chr4.1:39793512-39793531 | None:intergenic | 40.0% | |
| CTAGGTAGTACTCCCTTTAA+TGG | + | chr4.1:39791158-39791177 | MS.gene050097:intron | 40.0% | |
| GAGCCTGTAAATCTTCAGTT+TGG | + | chr4.1:39793933-39793952 | MS.gene050097:CDS | 40.0% | |
| GCATCCAAGTCCAAAACAAA+TGG | + | chr4.1:39793103-39793122 | MS.gene050097:CDS | 40.0% | |
| GCGTGCAAAATATATGACAC+TGG | + | chr4.1:39793455-39793474 | MS.gene050097:CDS | 40.0% | |
| GTACTGAACTCATTCGGTAT+AGG | + | chr4.1:39792486-39792505 | MS.gene050097:intron | 40.0% | |
| GTAGCTCAAAGAAGAGTTCT+CGG | + | chr4.1:39794334-39794353 | MS.gene050097:intron | 40.0% | |
| GTGAATCAAGATTGCTAGGA+AGG | - | chr4.1:39791478-39791497 | None:intergenic | 40.0% | |
| GTTCAAACTAACCTCCTTAG+CGG | - | chr4.1:39794111-39794130 | None:intergenic | 40.0% | |
| TATCCTTGCCCAAAAGTGAT+TGG | - | chr4.1:39792094-39792113 | None:intergenic | 40.0% | |
| TATGCTGCGCATGATTGTTA+AGG | + | chr4.1:39794167-39794186 | MS.gene050097:intron | 40.0% | |
| TCAATTTCAGTAGCCCAACT+GGG | - | chr4.1:39790651-39790670 | None:intergenic | 40.0% | |
| TCCTTTCGAGCTCAAAGAAT+TGG | - | chr4.1:39793727-39793746 | None:intergenic | 40.0% | |
| TCTGCTTTACCAATCCGTAA+GGG | - | chr4.1:39793915-39793934 | None:intergenic | 40.0% | |
| TCTTGCAATGGAAGATGTGT+TGG | + | chr4.1:39794828-39794847 | MS.gene050097:CDS | 40.0% | |
| TGCGCATGATTGTTAAGGTT+AGG | + | chr4.1:39794172-39794191 | MS.gene050097:intron | 40.0% | |
| TGGCCTGTAAATTTGGTTGA+TGG | + | chr4.1:39793828-39793847 | MS.gene050097:CDS | 40.0% | |
| TGGTGATTGACAGTCTTGAT+AGG | + | chr4.1:39793156-39793175 | MS.gene050097:CDS | 40.0% | |
| TGTGTCACAATCACTTACCA+AGG | + | chr4.1:39793007-39793026 | MS.gene050097:CDS | 40.0% | |
| TTAGGAATGCCAGCATAGTT+GGG | + | chr4.1:39794190-39794209 | MS.gene050097:intron | 40.0% | |
| TTCAAACTAACCTCCTTAGC+GGG | - | chr4.1:39794110-39794129 | None:intergenic | 40.0% | |
| TTCTAACAGGATCGTATAGC+TGG | - | chr4.1:39793659-39793678 | None:intergenic | 40.0% | |
| TTTGGCGGTATTTAATCCCA+TGG | - | chr4.1:39794927-39794946 | None:intergenic | 40.0% | |
| ! | AGATTGTTTTCGTTCTTCCC+AGG | - | chr4.1:39793192-39793211 | None:intergenic | 40.0% |
| ! | CTCTTTTCAGCAAGCAAAGA+AGG | - | chr4.1:39795027-39795046 | None:intergenic | 40.0% |
| ! | GAAATTTTGAACTTGCACCC+AGG | + | chr4.1:39791399-39791418 | MS.gene050097:intron | 40.0% |
| ! | GCAGAGTACTCTGCAAATTA+TGG | + | chr4.1:39790424-39790443 | MS.gene050097:CDS | 40.0% |
| ! | GTTTTTATGGAATCAGTGCC+TGG | + | chr4.1:39793955-39793974 | MS.gene050097:CDS | 40.0% |
| ! | TCGACGATGAGGTAGATTTT+TGG | + | chr4.1:39794438-39794457 | MS.gene050097:intron | 40.0% |
| ! | TCGTATCAACGGATTCCATT+AGG | + | chr4.1:39792850-39792869 | MS.gene050097:CDS | 40.0% |
| !! | AAACCAATCACTTTTGGGCA+AGG | + | chr4.1:39792088-39792107 | MS.gene050097:CDS | 40.0% |
| !! | AGGTTTTTACTCTCGGTGTA+AGG | - | chr4.1:39791908-39791927 | None:intergenic | 40.0% |
| !! | ATGAATAATCATGGTGGTGG+TGG | + | chr4.1:39790287-39790306 | MS.gene050097:CDS | 40.0% |
| !! | CTTTGTTGATTCCTCGTCTA+CGG | - | chr4.1:39794788-39794807 | None:intergenic | 40.0% |
| !! | GGTTTTTACTCTCGGTGTAA+GGG | - | chr4.1:39791907-39791926 | None:intergenic | 40.0% |
| !! | GTTGTCTGTGTGAGTTTTAG+TGG | + | chr4.1:39791340-39791359 | MS.gene050097:intron | 40.0% |
| !! | TACAAATGAGGAGAAGCACT+TGG | + | chr4.1:39793419-39793438 | MS.gene050097:CDS | 40.0% |
| AAGCTTGATGTTGTGGAGCT+TGG | + | chr4.1:39794892-39794911 | MS.gene050097:CDS | 45.0% | |
| ACAGCCAGAGGATTGATAAG+AGG | - | chr4.1:39794063-39794082 | None:intergenic | 45.0% | |
| ACCAAGGATGAAGCAACTGA+TGG | + | chr4.1:39793023-39793042 | MS.gene050097:CDS | 45.0% | |
| ACCATCAGTTGCTTCATCCT+TGG | - | chr4.1:39793027-39793046 | None:intergenic | 45.0% | |
| ACTAGATGTGGGTAGTGATG+AGG | + | chr4.1:39794388-39794407 | MS.gene050097:CDS | 45.0% | |
| AGAAGGAAAACCCCTTGTTG+TGG | + | chr4.1:39792898-39792917 | MS.gene050097:CDS | 45.0% | |
| AGAGTACGACGATCTTGCAA+TGG | + | chr4.1:39794816-39794835 | MS.gene050097:CDS | 45.0% | |
| AGGACCCAAGTACTTGTACT+CGG | - | chr4.1:39792213-39792232 | None:intergenic | 45.0% | |
| ATATAAGGCGCAGAGTGAGA+TGG | + | chr4.1:39793136-39793155 | MS.gene050097:CDS | 45.0% | |
| ATCCGTAAGGGACCATACAT+TGG | - | chr4.1:39793903-39793922 | None:intergenic | 45.0% | |
| ATCCTCAATGAAGCTGACGA+CGG | - | chr4.1:39791372-39791391 | None:intergenic | 45.0% | |
| ATGTATGGTCCCTTACGGAT+TGG | + | chr4.1:39793903-39793922 | MS.gene050097:CDS | 45.0% | |
| CAAAGCTCGACACGCATTTA+AGG | + | chr4.1:39790451-39790470 | MS.gene050097:CDS | 45.0% | |
| CACGCGTACATAGATAATCC+TGG | - | chr4.1:39793530-39793549 | None:intergenic | 45.0% | |
| CCATTTGTGCCAATCCTAGT+TGG | + | chr4.1:39791450-39791469 | MS.gene050097:intron | 45.0% | |
| CCGAAACATCAGAACAATCC+AGG | + | chr4.1:39793509-39793528 | MS.gene050097:CDS | 45.0% | |
| CCTTAGAACTAGAAGTGAGC+CGG | + | chr4.1:39794960-39794979 | MS.gene050097:CDS | 45.0% | |
| CTCTGCTTTACCAATCCGTA+AGG | - | chr4.1:39793916-39793935 | None:intergenic | 45.0% | |
| GACAGCTGAAAACAGTTGCA+TGG | - | chr4.1:39793614-39793633 | None:intergenic | 45.0% | |
| GAGCTTGGAGCTAAAATCCA+TGG | + | chr4.1:39794907-39794926 | MS.gene050097:CDS | 45.0% | |
| GCCAATTCTTTGAGCTCGAA+AGG | + | chr4.1:39793723-39793742 | MS.gene050097:CDS | 45.0% | |
| GCTGAAAACAGTTGCATGGA+TGG | - | chr4.1:39793610-39793629 | None:intergenic | 45.0% | |
| GGAATCGGACATCCAATGTA+TGG | + | chr4.1:39793888-39793907 | MS.gene050097:CDS | 45.0% | |
| GGCGCACTTCTGTATTTGTT+CGG | + | chr4.1:39792150-39792169 | MS.gene050097:CDS | 45.0% | |
| GTAGGACCGGAAAATGGAAT+CGG | + | chr4.1:39793873-39793892 | MS.gene050097:CDS | 45.0% | |
| GTTAGGAATGCCAGCATAGT+TGG | + | chr4.1:39794189-39794208 | MS.gene050097:intron | 45.0% | |
| TAACTAGTGCCACCATCACT+AGG | - | chr4.1:39793981-39794000 | None:intergenic | 45.0% | |
| TAGGTAGAAGCCCACAACAA+GGG | - | chr4.1:39792912-39792931 | None:intergenic | 45.0% | |
| TCAAACTAACCTCCTTAGCG+GGG | - | chr4.1:39794109-39794128 | None:intergenic | 45.0% | |
| TCACTTCAGGGTAGCAGATT+GGG | + | chr4.1:39792816-39792835 | MS.gene050097:intron | 45.0% | |
| TCAGCTGATCCAATCCTTTC+TGG | + | chr4.1:39795126-39795145 | MS.gene050097:CDS | 45.0% | |
| TCTAGAGAAACTACTGCGTC+AGG | - | chr4.1:39792059-39792078 | None:intergenic | 45.0% | |
| TCTTGAGATGCCACTGCTAT+TGG | - | chr4.1:39794988-39795007 | None:intergenic | 45.0% | |
| TGACAAAGAAGTCGACGATG+AGG | + | chr4.1:39794427-39794446 | MS.gene050097:CDS | 45.0% | |
| TGATAGGCTAATCACTGCCT+GGG | + | chr4.1:39793172-39793191 | MS.gene050097:CDS | 45.0% | |
| TGGAGTCTGTTGTGCTTCAT+AGG | - | chr4.1:39794589-39794608 | None:intergenic | 45.0% | |
| TTCACTTCAGGGTAGCAGAT+TGG | + | chr4.1:39792815-39792834 | MS.gene050097:intron | 45.0% | |
| TTGATAGGCTAATCACTGCC+TGG | + | chr4.1:39793171-39793190 | MS.gene050097:CDS | 45.0% | |
| TTGGCCGAGTACAAGTACTT+GGG | + | chr4.1:39792206-39792225 | MS.gene050097:CDS | 45.0% | |
| TTTGGCCGAGTACAAGTACT+TGG | + | chr4.1:39792205-39792224 | MS.gene050097:CDS | 45.0% | |
| ! | AAAGAAGAGTTCTCGGTGCA+TGG | + | chr4.1:39794341-39794360 | MS.gene050097:CDS | 45.0% |
| ! | CCAACTAGGATTGGCACAAA+TGG | - | chr4.1:39791453-39791472 | None:intergenic | 45.0% |
| ! | CGCCTTTTGTACAACTCGAA+TGG | - | chr4.1:39792134-39792153 | None:intergenic | 45.0% |
| ! | CTGTTTTCAGCTGTCTTCGA+AGG | + | chr4.1:39793619-39793638 | MS.gene050097:CDS | 45.0% |
| ! | GAAGGAAAACCCCTTGTTGT+GGG | + | chr4.1:39792899-39792918 | MS.gene050097:CDS | 45.0% |
| ! | GAGAAGTTTTGCCAGTGAGA+AGG | + | chr4.1:39792881-39792900 | MS.gene050097:CDS | 45.0% |
| ! | GGAATTGGTCGAGATTTTGG+CGG | - | chr4.1:39794942-39794961 | None:intergenic | 45.0% |
| ! | GGATGTCCGATTCCATTTTC+CGG | - | chr4.1:39793882-39793901 | None:intergenic | 45.0% |
| ! | GGCGACATGGATTTTGTAGT+TGG | + | chr4.1:39791734-39791753 | MS.gene050097:intron | 45.0% |
| ! | TCTGTGACAGTGCTGTTATG+TGG | + | chr4.1:39792623-39792642 | MS.gene050097:CDS | 45.0% |
| ! | TTATGTGGCACTAGTGGATG+TGG | + | chr4.1:39792638-39792657 | MS.gene050097:CDS | 45.0% |
| !! | AATAATCATGGTGGTGGTGG+TGG | + | chr4.1:39790290-39790309 | MS.gene050097:CDS | 45.0% |
| !! | AGGAAGGTACCAACTAGGAT+TGG | - | chr4.1:39791462-39791481 | None:intergenic | 45.0% |
| !! | CAAGAGTATCAGTGTCGTGT+CGG | + | chr4.1:39794658-39794677 | MS.gene050097:intron | 45.0% |
| !! | GGTAATGGGAAGTCCATATG+TGG | + | chr4.1:39793849-39793868 | MS.gene050097:CDS | 45.0% |
| !! | TACGCGTGCTGAAAAGCATT+TGG | + | chr4.1:39793542-39793561 | MS.gene050097:CDS | 45.0% |
| !! | TGATGGTGGCACTAGTTATG+CGG | + | chr4.1:39793983-39794002 | MS.gene050097:CDS | 45.0% |
| !! | TTGCTAGGAAGGTACCAACT+AGG | - | chr4.1:39791467-39791486 | None:intergenic | 45.0% |
| !!! | TTTTTTAAATGAAATATTTT+AGG | + | chr4.1:39791767-39791786 | MS.gene050097:intron | 5.0% |
| AACTGGGTCAATAAGCCTCG+AGG | - | chr4.1:39790635-39790654 | None:intergenic | 50.0% | |
| ACCAAGTCTGCTCTCTGGTT+AGG | - | chr4.1:39792233-39792252 | None:intergenic | 50.0% | |
| ACTGGGTCAATAAGCCTCGA+GGG | - | chr4.1:39790634-39790653 | None:intergenic | 50.0% | |
| AGAGCTGATGGGACTGATAC+CGG | + | chr4.1:39794023-39794042 | MS.gene050097:CDS | 50.0% | |
| AGGTAGAAGCCCACAACAAG+GGG | - | chr4.1:39792911-39792930 | None:intergenic | 50.0% | |
| ATCAGATTTCCCCGCTAAGG+AGG | + | chr4.1:39794097-39794116 | MS.gene050097:CDS | 50.0% | |
| ATCGACGCTGTCTGCAATAC+TGG | + | chr4.1:39792664-39792683 | MS.gene050097:CDS | 50.0% | |
| ATGCTCAGTAGCACAAGAGC+CGG | - | chr4.1:39793087-39793106 | None:intergenic | 50.0% | |
| CGAGGCTTATTGACCCAGTT+GGG | + | chr4.1:39790635-39790654 | MS.gene050097:intron | 50.0% | |
| CGGGGAAATCTGATAGCCTA+GGG | - | chr4.1:39794091-39794110 | None:intergenic | 50.0% | |
| CTAGAACCAAGTCTGCTCTC+TGG | - | chr4.1:39792238-39792257 | None:intergenic | 50.0% | |
| GATACACGGACATCAGAGAC+CGG | + | chr4.1:39793065-39793084 | MS.gene050097:CDS | 50.0% | |
| GCTATCAGATTTCCCCGCTA+AGG | + | chr4.1:39794094-39794113 | MS.gene050097:CDS | 50.0% | |
| GGGAAGTCCATATGTGGTGT+AGG | + | chr4.1:39793855-39793874 | MS.gene050097:CDS | 50.0% | |
| GGGGAAATCTGATAGCCTAG+GGG | - | chr4.1:39794090-39794109 | None:intergenic | 50.0% | |
| GTAGGTAGAAGCCCACAACA+AGG | - | chr4.1:39792913-39792932 | None:intergenic | 50.0% | |
| GTCCATATGTGGTGTAGGAC+CGG | + | chr4.1:39793860-39793879 | MS.gene050097:CDS | 50.0% | |
| GTCTCTGATGTCCGTGTATC+AGG | - | chr4.1:39793065-39793084 | None:intergenic | 50.0% | |
| TACAGATGGGTCTGTGGCAA+AGG | + | chr4.1:39793803-39793822 | MS.gene050097:CDS | 50.0% | |
| TCCTAACCAGAGAGCAGACT+TGG | + | chr4.1:39792229-39792248 | MS.gene050097:CDS | 50.0% | |
| TCGAGGCTTATTGACCCAGT+TGG | + | chr4.1:39790634-39790653 | MS.gene050097:intron | 50.0% | |
| TGTGGTGTAGGACCGGAAAA+TGG | + | chr4.1:39793867-39793886 | MS.gene050097:CDS | 50.0% | |
| TTCCGGTCCTACACCACATA+TGG | - | chr4.1:39793865-39793884 | None:intergenic | 50.0% | |
| TTCGCTTCAGCAACAGCAAC+CGG | - | chr4.1:39792957-39792976 | None:intergenic | 50.0% | |
| TTGAACTTGCACCCAGGTCA+CGG | + | chr4.1:39791405-39791424 | MS.gene050097:intron | 50.0% | |
| TTGACGAGTCCAGAGCTGAT+GGG | + | chr4.1:39794012-39794031 | MS.gene050097:CDS | 50.0% | |
| ! | CAAGGGGTTTTCCTTCTCAC+TGG | - | chr4.1:39792895-39792914 | None:intergenic | 50.0% |
| ! | GACTAGTTATTGCGGCGACA+TGG | + | chr4.1:39791721-39791740 | MS.gene050097:intron | 50.0% |
| ! | GATGGTGGCACTAGTTATGC+GGG | + | chr4.1:39793984-39794003 | MS.gene050097:CDS | 50.0% |
| ! | GTGCTGTTATGTGGCACTAG+TGG | + | chr4.1:39792632-39792651 | MS.gene050097:CDS | 50.0% |
| ! | TCCTTTCTGGTGCTCCTCAA+AGG | + | chr4.1:39795139-39795158 | MS.gene050097:CDS | 50.0% |
| !! | ACCTTTGAGGAGCACCAGAA+AGG | - | chr4.1:39795143-39795162 | None:intergenic | 50.0% |
| !! | CCGGCTCACTTCTAGTTCTA+AGG | - | chr4.1:39794963-39794982 | None:intergenic | 50.0% |
| !! | GACCGGTTTGACCTGTTGTT+TGG | + | chr4.1:39791049-39791068 | MS.gene050097:intron | 50.0% |
| !! | TGAGGAGCACCAGAAAGGAT+TGG | - | chr4.1:39795138-39795157 | None:intergenic | 50.0% |
| ATCAGTGCCTGGCCTAGTGA+TGG | + | chr4.1:39793966-39793985 | MS.gene050097:CDS | 55.0% | |
| ATGGGTCTGTGGCAAAGGCT+TGG | + | chr4.1:39793808-39793827 | MS.gene050097:CDS | 55.0% | |
| CAAACACTCGCCTGCATGGT+AGG | - | chr4.1:39792931-39792950 | None:intergenic | 55.0% | |
| CTACCATGCAGGCGAGTGTT+TGG | + | chr4.1:39792929-39792948 | MS.gene050097:CDS | 55.0% | |
| GATCCAAACACTCGCCTGCA+TGG | - | chr4.1:39792935-39792954 | None:intergenic | 55.0% | |
| GATGCCACTGCTATTGGCAC+CGG | - | chr4.1:39794982-39795001 | None:intergenic | 55.0% | |
| GCGGGGAAATCTGATAGCCT+AGG | - | chr4.1:39794092-39794111 | None:intergenic | 55.0% | |
| GCTCACATCAACCGTGACCT+GGG | - | chr4.1:39791419-39791438 | None:intergenic | 55.0% | |
| GGTATCAGTCCCATCAGCTC+TGG | - | chr4.1:39794024-39794043 | None:intergenic | 55.0% | |
| GTTGACGAGTCCAGAGCTGA+TGG | + | chr4.1:39794011-39794030 | MS.gene050097:CDS | 55.0% | |
| TGCAGGCGAGTGTTTGGATC+CGG | + | chr4.1:39792935-39792954 | MS.gene050097:CDS | 55.0% | |
| TGCCGTCGTCAGCTTCATTG+AGG | + | chr4.1:39791367-39791386 | MS.gene050097:intron | 55.0% | |
| TGGGCTTCTACCTACCATGC+AGG | + | chr4.1:39792918-39792937 | MS.gene050097:CDS | 55.0% | |
| ! | GCAAGGCATCCCAACTATGC+TGG | - | chr4.1:39794202-39794221 | None:intergenic | 55.0% |
| ! | GGTTGCTGTTGCTGAAGCGA+AGG | + | chr4.1:39792956-39792975 | MS.gene050097:CDS | 55.0% |
| ! | GTCTTCGAAGGCGTGAAGCT+GGG | + | chr4.1:39793631-39793650 | MS.gene050097:CDS | 55.0% |
| ! | TCTTCGAAGGCGTGAAGCTG+GGG | + | chr4.1:39793632-39793651 | MS.gene050097:CDS | 55.0% |
| ! | TGTCTTCGAAGGCGTGAAGC+TGG | + | chr4.1:39793630-39793649 | MS.gene050097:CDS | 55.0% |
| !! | AGCCTCGAGGGATTAGTCTC+TGG | - | chr4.1:39790622-39790641 | None:intergenic | 55.0% |
| !! | CAGACTTGGTTCTAGCCTGC+AGG | + | chr4.1:39792243-39792262 | MS.gene050097:CDS | 55.0% |
| !! | CATGGTGGTGGTGGTGGAAT+TGG | + | chr4.1:39790296-39790315 | MS.gene050097:CDS | 55.0% |
| !! | GCCTCGAGGGATTAGTCTCT+GGG | - | chr4.1:39790621-39790640 | None:intergenic | 55.0% |
| AGTGCCACCATCACTAGGCC+AGG | - | chr4.1:39793976-39793995 | None:intergenic | 60.0% | |
| AGTGCCTGGCCTAGTGATGG+TGG | + | chr4.1:39793969-39793988 | MS.gene050097:CDS | 60.0% | |
| CGAGTCGCGTCAACCCAGTT+GGG | + | chr4.1:39790728-39790747 | MS.gene050097:intron | 60.0% | |
| CGCTCACATCAACCGTGACC+TGG | - | chr4.1:39791420-39791439 | None:intergenic | 60.0% | |
| GCCCAGAGACTAATCCCTCG+AGG | + | chr4.1:39790617-39790636 | MS.gene050097:intron | 60.0% | |
| TCGAGTCGCGTCAACCCAGT+TGG | + | chr4.1:39790727-39790746 | MS.gene050097:intron | 60.0% | |
| ! | ACTGGGTTGACGCGACTCGA+TGG | - | chr4.1:39790727-39790746 | None:intergenic | 60.0% |
| ! | GCAGGTTGGATCCGTAGACG+AGG | + | chr4.1:39794774-39794793 | MS.gene050097:intron | 60.0% |
| ! | TGAGCCGGTGCCAATAGCAG+TGG | + | chr4.1:39794975-39794994 | MS.gene050097:CDS | 60.0% |
| CCTAGGGGAGCTACAGCCAG+AGG | - | chr4.1:39794075-39794094 | None:intergenic | 65.0% | |
| CCTCTGGCTGTAGCTCCCCT+AGG | + | chr4.1:39794072-39794091 | MS.gene050097:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 39790275 | 39795164 | 39790275 | ID=MS.gene050097 |
| chr4.1 | mRNA | 39790275 | 39795164 | 39790275 | ID=MS.gene050097.t1;Parent=MS.gene050097 |
| chr4.1 | exon | 39790275 | 39790472 | 39790275 | ID=MS.gene050097.t1.exon1;Parent=MS.gene050097.t1 |
| chr4.1 | CDS | 39790275 | 39790472 | 39790275 | ID=cds.MS.gene050097.t1;Parent=MS.gene050097.t1 |
| chr4.1 | exon | 39791999 | 39792264 | 39791999 | ID=MS.gene050097.t1.exon2;Parent=MS.gene050097.t1 |
| chr4.1 | CDS | 39791999 | 39792264 | 39791999 | ID=cds.MS.gene050097.t1;Parent=MS.gene050097.t1 |
| chr4.1 | exon | 39792604 | 39792685 | 39792604 | ID=MS.gene050097.t1.exon3;Parent=MS.gene050097.t1 |
| chr4.1 | CDS | 39792604 | 39792685 | 39792604 | ID=cds.MS.gene050097.t1;Parent=MS.gene050097.t1 |
| chr4.1 | exon | 39792825 | 39793250 | 39792825 | ID=MS.gene050097.t1.exon4;Parent=MS.gene050097.t1 |
| chr4.1 | CDS | 39792825 | 39793250 | 39792825 | ID=cds.MS.gene050097.t1;Parent=MS.gene050097.t1 |
| chr4.1 | exon | 39793369 | 39794118 | 39793369 | ID=MS.gene050097.t1.exon5;Parent=MS.gene050097.t1 |
| chr4.1 | CDS | 39793369 | 39794118 | 39793369 | ID=cds.MS.gene050097.t1;Parent=MS.gene050097.t1 |
| chr4.1 | exon | 39794338 | 39794448 | 39794338 | ID=MS.gene050097.t1.exon6;Parent=MS.gene050097.t1 |
| chr4.1 | CDS | 39794338 | 39794448 | 39794338 | ID=cds.MS.gene050097.t1;Parent=MS.gene050097.t1 |
| chr4.1 | exon | 39794778 | 39795164 | 39794778 | ID=MS.gene050097.t1.exon7;Parent=MS.gene050097.t1 |
| chr4.1 | CDS | 39794778 | 39795164 | 39794778 | ID=cds.MS.gene050097.t1;Parent=MS.gene050097.t1 |
| Gene Sequence |
| Protein sequence |
