AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43869

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43869.t1 MTR_2g095260 98.547 688 10 0 62 749 49 736 0.0 1405
MS.gene43869.t1 MTR_4g057960 75.788 698 132 6 62 749 66 736 0.0 998
MS.gene43869.t1 MTR_0372s0010 71.530 281 58 1 62 342 1 259 1.92e-124 372
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43869.t1 AT5G60760 66.857 700 201 13 62 749 58 738 0.0 853
MS.gene43869.t1 AT3G45090 62.412 713 222 12 45 747 16 692 0.0 810
MS.gene43869.t1 AT3G45090 63.218 696 210 12 62 747 52 711 0.0 798
MS.gene43869.t1 AT5G60760 68.089 539 156 10 217 749 1 529 0.0 675

Find 192 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATTTGTATTGTTTATTT+TGG 0.033175 2.2:+6412201 None:intergenic
CTCATATTCTTCTTTGCTTA+TGG 0.145710 2.2:-6410928 MS.gene43869:CDS
CCTGGATTGTTCTTATATTT+CGG 0.237749 2.2:+6412260 None:intergenic
TTATCTCTGGTGCTCCTTAA+AGG 0.248278 2.2:-6410800 None:intergenic
AAAACGTTCTCTTAGTATTT+CGG 0.271083 2.2:-6410859 MS.gene43869:CDS
TTCTCTTAGTATTTCGGCTT+TGG 0.277755 2.2:-6410853 MS.gene43869:CDS
AAACCAAACTGAAGATTTAC+AGG 0.301897 2.2:+6411833 None:intergenic
TCACAGATTCCTTCCGTTCT+CGG 0.305369 2.2:+6413186 None:intergenic
TGCCATTTGAGTTGTATAAA+AGG 0.310449 2.2:-6413932 MS.gene43869:CDS
CTCTGGTACTGGCTCACTTC+TGG 0.313170 2.2:+6410959 None:intergenic
ATGCAAGATGTGCCTGAAAA+TGG 0.315979 2.2:-6411098 MS.gene43869:CDS
ACCTCTCATCATGTGCCTAA+TGG 0.317708 2.2:+6412890 None:intergenic
CCTTCAGTTGCTTCATCCTT+AGG 0.320856 2.2:+6412732 None:intergenic
ACTGTAACGGGAAGCCTGTT+TGG 0.324719 2.2:-6411922 MS.gene43869:CDS
AGGTTCTTCAAGGCATCTTA+TGG 0.326882 2.2:-6411999 MS.gene43869:CDS
CTGGCTCACTTCTGGTTCTA+AGG 0.338652 2.2:+6410967 None:intergenic
CTGTAACGGGAAGCCTGTTT+GGG 0.339033 2.2:-6411921 MS.gene43869:CDS
TAATGGCGGATGCCAGATTA+TGG 0.341089 2.2:+6414459 None:intergenic
CGGAAACATGGTAGATATAA+TGG 0.345405 2.2:+6414530 None:intergenic
GTCTACGTAGGCGTGAAGTT+GGG 0.346299 2.2:-6412138 MS.gene43869:CDS
GGCTTGGCCTGTTAATTCAT+TGG 0.346391 2.2:-6411945 MS.gene43869:CDS
TTTGCTTCTGCAACAGCAAC+AGG 0.348963 2.2:+6412801 None:intergenic
AAAAGGAAAACCCCTTGTTA+TGG 0.366934 2.2:-6412857 MS.gene43869:CDS
ATCAAGTCTGCTCTCTGGTT+TGG 0.368718 2.2:+6413831 None:intergenic
TTCCAAATTACCTCCTTTGA+AGG 0.370308 2.2:+6411674 None:intergenic
CAGACTTGATGCTAGCTTGC+AGG 0.370653 2.2:-6413818 MS.gene43869:intron
TCTCTTAGTATTTCGGCTTT+GGG 0.377435 2.2:-6410852 MS.gene43869:CDS
AGATATCGTCTGTGATGTTC+TGG 0.377775 2.2:-6413874 MS.gene43869:CDS
GAACCTGTAAATCTTCAGTT+TGG 0.379325 2.2:-6411836 MS.gene43869:CDS
ATCCACGTTGTCTGCATTGC+TGG 0.384094 2.2:-6413129 MS.gene43869:intron
AACGGACAAGAGAATGAAAT+TGG 0.389900 2.2:-6411896 MS.gene43869:CDS
TTAATTCATTGGACTGTAAC+GGG 0.395016 2.2:-6411934 MS.gene43869:CDS
ATCTACCATGTTTCCGCTAT+CGG 0.395185 2.2:-6414523 MS.gene43869:CDS
GGCGTACAACTGTATTTGTT+AGG 0.401307 2.2:-6413911 MS.gene43869:CDS
TTGCAGAAGCAAAGGCAAAA+AGG 0.405441 2.2:-6412791 MS.gene43869:CDS
TCTTGTCCGTTGCCCCAAAC+AGG 0.407663 2.2:+6411908 None:intergenic
TAGATAGGCTAATCACTTCA+TGG 0.408630 2.2:-6412584 MS.gene43869:CDS
TTACAGTCCAATGAATTAAC+AGG 0.413116 2.2:+6411938 None:intergenic
AAAGGAAAACCCCTTGTTAT+GGG 0.413866 2.2:-6412856 MS.gene43869:CDS
GATCTTTCCTTGACAGTAAG+TGG 0.418706 2.2:+6413970 None:intergenic
TGATGAAGAGTATGATGATT+TGG 0.426682 2.2:-6411123 MS.gene43869:CDS
GCCAATTCTTTGAGCTCAAA+AGG 0.427730 2.2:-6412046 MS.gene43869:CDS
GTCAATCACCATTTCACTCT+GGG 0.431639 2.2:+6412611 None:intergenic
ATGTATGGACCCTTGCGAAT+TGG 0.431877 2.2:-6411866 MS.gene43869:CDS
GATTCTGTGCCGATTGCAAC+AGG 0.433652 2.2:-6414562 MS.gene43869:CDS
AGTATTTCGGCTTTGGGAAA+AGG 0.436131 2.2:-6410846 MS.gene43869:CDS
TTGTATCAACTGATTCCATT+AGG 0.437901 2.2:-6412905 MS.gene43869:CDS
CAGACGATGATGAAGAGTTC+AGG 0.441179 2.2:-6411067 MS.gene43869:CDS
TGGTTCTAAGGAAGAGATCC+AGG 0.441204 2.2:+6410979 None:intergenic
AGAGATTGACGATCAATTAG+AGG 0.446341 2.2:-6411493 MS.gene43869:CDS
TGAATGACCACTGATATTAA+TGG 0.448587 2.2:+6414442 None:intergenic
CACGGCAGCAGTTTATTTGT+TGG 0.452076 2.2:+6414601 None:intergenic
AAAGAGTCCGTTGTTGTTGA+GGG 0.454342 2.2:-6412552 MS.gene43869:CDS
ACGGCTTGTACCACCATCAC+AGG 0.454529 2.2:+6411790 None:intergenic
TTTACTTCAGGGAAGTCGGC+TGG 0.454573 2.2:-6412940 MS.gene43869:intron
TCAGGTTTCGATGCTTCTAA+AGG 0.457018 2.2:-6414053 MS.gene43869:CDS
GAAGGTCCATTAGACATCCT+TGG 0.458417 2.2:+6411692 None:intergenic
GAGCAGAAGGACTCTGGTAC+TGG 0.458591 2.2:+6410948 None:intergenic
TCAAAACAAATGGCTGTTGA+AGG 0.458698 2.2:-6412642 MS.gene43869:CDS
TACAAACGAGGACAAGCATA+TGG 0.464129 2.2:-6412350 MS.gene43869:CDS
TAAGGAGCACCAGAGATAAT+CGG 0.465485 2.2:+6410804 None:intergenic
TGTCTACGTAGGCGTGAAGT+TGG 0.466397 2.2:-6412139 MS.gene43869:CDS
ACGGTTGAATTCAAAACAAA+TGG 0.467216 2.2:-6412652 MS.gene43869:CDS
GAAATTGGAAGTCCAATGTA+TGG 0.467322 2.2:-6411881 MS.gene43869:CDS
TGGTGATTGACAGCCTAGAT+AGG 0.467728 2.2:-6412599 MS.gene43869:CDS
ATGAAGTGATTAGCCTATCT+AGG 0.468436 2.2:+6412586 None:intergenic
CTACCATGCAGGCGAGTGCT+TGG 0.468831 2.2:-6412826 MS.gene43869:CDS
AGTTCACCAAGGATGTCTAA+TGG 0.470907 2.2:-6411698 MS.gene43869:CDS
AGCCGTGCTGGAAGTGTTGA+TGG 0.472107 2.2:-6411773 MS.gene43869:CDS
TGTCAATCACCATTTCACTC+TGG 0.474547 2.2:+6412610 None:intergenic
ATGGGTCTGTGGCAAAGGCT+TGG 0.479631 2.2:-6411961 MS.gene43869:CDS
CCGAAATATAAGAACAATCC+AGG 0.483387 2.2:-6412260 MS.gene43869:CDS
TACTGATGGGTCTGTGGCAA+AGG 0.483642 2.2:-6411966 MS.gene43869:CDS
CAAATTTGATATACATACAT+TGG 0.486148 2.2:-6412697 MS.gene43869:CDS
TTCAGGAGTAAAGTCACTAT+TGG 0.486448 2.2:-6411050 MS.gene43869:CDS
ATGGCTCTTGTAAATACTGA+TGG 0.489629 2.2:-6411980 MS.gene43869:CDS
GTCCAGGATCCGATTATCTC+TGG 0.491772 2.2:-6410813 MS.gene43869:CDS
GAGTAAAGTCACTATTGGTC+AGG 0.492599 2.2:-6411045 MS.gene43869:CDS
AATGGCTGTTGAAGGATTCA+AGG 0.492654 2.2:-6412634 MS.gene43869:CDS
TTTATTTGTTGGTAGTTCCA+TGG 0.493005 2.2:+6414612 None:intergenic
ATCATGAAGGGTATGATTGA+AGG 0.493705 2.2:+6412379 None:intergenic
TCCAACGACAAGGTTCTTCA+AGG 0.494210 2.2:-6412009 MS.gene43869:CDS
GAAAGGCGACTGCCACCATC+GGG 0.494755 2.2:-6410897 MS.gene43869:CDS
AGGGCTGTGGTGCGCCTGAA+CGG 0.504415 2.2:-6412671 MS.gene43869:CDS
GGGAAGCCTGTTTGGGGCAA+CGG 0.504559 2.2:-6411914 MS.gene43869:CDS
TTGTGTGGAACTAGTGGTTG+TGG 0.507100 2.2:-6413155 MS.gene43869:CDS
ATCAGTGCTTGGCCCTGTGA+TGG 0.507551 2.2:-6411803 MS.gene43869:CDS
TGAAAGGCGACTGCCACCAT+CGG 0.509706 2.2:-6410898 MS.gene43869:CDS
TTCTGCCTTTCCAATTCGCA+AGG 0.509708 2.2:+6411856 None:intergenic
ATTCAAGGCCCAGAGTGAAA+TGG 0.509904 2.2:-6412619 MS.gene43869:CDS
AAAAGGTAGTTCCACAGTCC+AGG 0.510034 2.2:-6410829 MS.gene43869:CDS
CTAGCATCAAGTCTGCTCTC+TGG 0.512934 2.2:+6413826 None:intergenic
GAAAGAGTCCGTTGTTGTTG+AGG 0.513487 2.2:-6412553 MS.gene43869:CDS
GTTTGTAATGTATATCATGA+AGG 0.517075 2.2:+6412366 None:intergenic
CTCGCCTGCATGGTAGGTAG+AGG 0.520594 2.2:+6412833 None:intergenic
CACCAGAGATAATCGGATCC+TGG 0.522266 2.2:+6410811 None:intergenic
GGTCATATACTTTGCACGTA+CGG 0.523998 2.2:+6412318 None:intergenic
TGATATACATACATTGGAGG+AGG 0.525323 2.2:-6412691 MS.gene43869:CDS
GTTAATTCATTGGACTGTAA+CGG 0.525621 2.2:-6411935 MS.gene43869:CDS
TTACTTCAGGGAAGTCGGCT+GGG 0.528445 2.2:-6412939 MS.gene43869:intron
GCCTTGAAGAACCTTGTCGT+TGG 0.530513 2.2:+6412008 None:intergenic
ATGTGCCTGAAAATGGATAT+TGG 0.531952 2.2:-6411091 MS.gene43869:CDS
GATGGTGGTACAAGCCGTGC+TGG 0.535630 2.2:-6411785 MS.gene43869:CDS
GATGTCTAATGGACCTTCAA+AGG 0.536687 2.2:-6411687 MS.gene43869:CDS
CAAGCACTCGCCTGCATGGT+AGG 0.537165 2.2:+6412827 None:intergenic
CAAAGAAGAATATGAGCAGA+AGG 0.537361 2.2:+6410935 None:intergenic
CCCGCTTACAGAGATAATCC+TGG 0.537820 2.2:+6412242 None:intergenic
TTACTGTCAAGGAAAGATCA+TGG 0.542320 2.2:-6413966 MS.gene43869:CDS
TATCTTTACTTCAGGGAAGT+CGG 0.544400 2.2:-6412944 MS.gene43869:intron
TCTACGTAGGCGTGAAGTTG+GGG 0.545231 2.2:-6412137 MS.gene43869:CDS
ACAGTTACAATATTTCTACT+AGG 0.546845 2.2:+6412100 None:intergenic
TATTGTAACTGTTATTGATG+AGG 0.548008 2.2:-6412089 MS.gene43869:CDS
GAATATGAGCAGAAGGACTC+TGG 0.551897 2.2:+6410942 None:intergenic
ACTGATGCTTTCAAGTCTGA+AGG 0.554152 2.2:-6414086 MS.gene43869:CDS
ATGTTGCGGCCTGTTGCAAT+CGG 0.554667 2.2:+6414553 None:intergenic
CTTCTTATCAGATCAGCAGA+AGG 0.557472 2.2:-6414139 MS.gene43869:intron
CATCCTTGGTGAACTACAGC+AGG 0.559058 2.2:+6411706 None:intergenic
ATTCGCAAGGGTCCATACAT+TGG 0.559226 2.2:+6411869 None:intergenic
CAGTATAAATATAGTGCTGT+GGG 0.560921 2.2:+6414493 None:intergenic
GTACAACTGTATTTGTTAGG+AGG 0.561227 2.2:-6413908 MS.gene43869:CDS
GACAGCTGAACACGGTAGCA+TGG 0.563904 2.2:+6412158 None:intergenic
GACCTAGGAGCTAAAATGCA+TGG 0.567487 2.2:-6411020 MS.gene43869:CDS
GCTGAACACGGTAGCATGGA+TGG 0.569665 2.2:+6412162 None:intergenic
GCAGTATAAATATAGTGCTG+TGG 0.570682 2.2:+6414492 None:intergenic
AATAAAGTATCGTCAAAACC+TGG 0.571639 2.2:-6410997 MS.gene43869:CDS
ATTTGATATACATACATTGG+AGG 0.572652 2.2:-6412694 MS.gene43869:CDS
TGTATCACAGTCACTACCTA+AGG 0.574464 2.2:-6412748 MS.gene43869:CDS
TCCATTAGGCACATGATGAG+AGG 0.576166 2.2:-6412891 MS.gene43869:CDS
TACAACTGTATTTGTTAGGA+GGG 0.576345 2.2:-6413907 MS.gene43869:CDS
TGGACCCTTGCGAATTGGAA+AGG 0.577190 2.2:-6411861 MS.gene43869:CDS
TGGCTCTTGTAAATACTGAT+GGG 0.577802 2.2:-6411979 MS.gene43869:CDS
AGTGCTTGGCCCTGTGATGG+TGG 0.579014 2.2:-6411800 MS.gene43869:CDS
ACCCATCAACACTTCCAGCA+CGG 0.579152 2.2:+6411771 None:intergenic
AAAGAGGATCTTTCAGTGCA+TGG 0.580123 2.2:-6411528 MS.gene43869:CDS
TAATCACTTCATGGGAAGAA+CGG 0.581096 2.2:-6412575 MS.gene43869:CDS
GCTGCCGTGGCATTATGAAA+TGG 0.581393 2.2:-6414587 MS.gene43869:CDS
TGTAAATACTGATGGGTCTG+TGG 0.581623 2.2:-6411972 MS.gene43869:CDS
GATCCAAGCACTCGCCTGCA+TGG 0.584950 2.2:+6412823 None:intergenic
AGATAGGCTAATCACTTCAT+GGG 0.585196 2.2:-6412583 MS.gene43869:CDS
TGGCAGAATCCGAGAACGGA+AGG 0.586710 2.2:-6413195 MS.gene43869:intron
CAACAAATAAACTGCTGCCG+TGG 0.587064 2.2:-6414600 MS.gene43869:CDS
CATACATTGGAGGAGGGCTG+TGG 0.588001 2.2:-6412684 MS.gene43869:CDS
TTTGTAATGTATATCATGAA+GGG 0.588784 2.2:+6412367 None:intergenic
GTAGGTAGAGGCCCATAACA+AGG 0.589281 2.2:+6412845 None:intergenic
GGTAGATATAATGGATGTTG+CGG 0.590943 2.2:+6414539 None:intergenic
TTCTTATCAGATCAGCAGAA+GGG 0.591392 2.2:-6414138 MS.gene43869:intron
AATATAGTGCTGTGGGCATG+AGG 0.593087 2.2:+6414500 None:intergenic
CCAGGATTATCTCTGTAAGC+GGG 0.595925 2.2:-6412242 MS.gene43869:CDS
TGCTCGAGGAAAACAGATGT+AGG 0.596468 2.2:-6413996 MS.gene43869:CDS
TGTTGCTGTTGCAGAAGCAA+AGG 0.598918 2.2:-6412799 MS.gene43869:CDS
ATTGACGATCAATTAGAGGC+GGG 0.599944 2.2:-6411489 MS.gene43869:CDS
AGGAAGCTTCTGCTTGCTCG+AGG 0.602193 2.2:-6414010 MS.gene43869:CDS
TGAGGCCGATAGCGGAAACA+TGG 0.602198 2.2:+6414518 None:intergenic
TCTGGCTGAGTACAAATATG+TGG 0.604842 2.2:-6413856 MS.gene43869:CDS
GATATACATACATTGGAGGA+GGG 0.606974 2.2:-6412690 MS.gene43869:CDS
TTGATGGCAGAATCCGAGAA+CGG 0.610169 2.2:-6413199 MS.gene43869:intron
TGTGGGCATGAGGCCGATAG+CGG 0.610176 2.2:+6414510 None:intergenic
TCCAGGATTATCTCTGTAAG+CGG 0.613865 2.2:-6412243 MS.gene43869:CDS
TCTGCCTTTCCAATTCGCAA+GGG 0.615208 2.2:+6411857 None:intergenic
TAGGCAACCACTTACTGTCA+AGG 0.625086 2.2:-6413977 MS.gene43869:CDS
TGGGCCTCTACCTACCATGC+AGG 0.628618 2.2:-6412837 MS.gene43869:CDS
ACTATTGGTCAGGAGGACCT+AGG 0.634344 2.2:-6411035 MS.gene43869:CDS
TCCACCATTTCATAATGCCA+CGG 0.634725 2.2:+6414583 None:intergenic
TTTCAATTGATCCAACGACA+AGG 0.637195 2.2:-6412019 MS.gene43869:CDS
GCATCCGCCATTAATATCAG+TGG 0.638164 2.2:-6414449 MS.gene43869:intron
TAAAGTCACTATTGGTCAGG+AGG 0.638531 2.2:-6411042 MS.gene43869:CDS
GATTGACGATCAATTAGAGG+CGG 0.640872 2.2:-6411490 MS.gene43869:CDS
TAGGTAGAGGCCCATAACAA+GGG 0.649521 2.2:+6412846 None:intergenic
CGGCTTGTACCACCATCACA+GGG 0.651241 2.2:+6411791 None:intergenic
GATAATCGGATCCTGGACTG+TGG 0.652520 2.2:+6410818 None:intergenic
GTGAACACCCTCAACAACAA+CGG 0.652680 2.2:+6412545 None:intergenic
GTCTAATGGACCTTCAAAGG+AGG 0.657757 2.2:-6411684 MS.gene43869:intron
GCCGTGCTGGAAGTGTTGAT+GGG 0.657937 2.2:-6411772 MS.gene43869:CDS
TGACAAACATATTCATGAGG+AGG 0.662652 2.2:-6411439 MS.gene43869:intron
GCAGGTAGGTTCAGTTGACG+AGG 0.662928 2.2:-6411159 MS.gene43869:intron
CCTACGTAGACAGCTGAACA+CGG 0.663448 2.2:+6412150 None:intergenic
TGTAACGGGAAGCCTGTTTG+GGG 0.664009 2.2:-6411920 MS.gene43869:CDS
CCTAAGGATGAAGCAACTGA+AGG 0.664976 2.2:-6412732 MS.gene43869:CDS
AGGTAGAGGCCCATAACAAG+GGG 0.666875 2.2:+6412847 None:intergenic
ATGTATATCAAATTTGCTAG+AGG 0.668336 2.2:+6412704 None:intergenic
CTGGCTGAGTACAAATATGT+GGG 0.669090 2.2:-6413855 MS.gene43869:CDS
CCTTGGTGAACTACAGCAGG+AGG 0.674184 2.2:+6411709 None:intergenic
ACGTGCAAAGTATATGACCC+TGG 0.674761 2.2:-6412314 MS.gene43869:CDS
CCTCCTGCTGTAGTTCACCA+AGG 0.677292 2.2:-6411709 MS.gene43869:CDS
TGGTGACAAACATATTCATG+AGG 0.691512 2.2:-6411442 MS.gene43869:CDS
GCCGTGGCATTATGAAATGG+TGG 0.692957 2.2:-6414584 MS.gene43869:CDS
CATGATATACATTACAAACG+AGG 0.701869 2.2:-6412362 MS.gene43869:CDS
TACCAGCAATGCAGACAACG+TGG 0.704786 2.2:+6413127 None:intergenic
CCGTGTTCAGCTGTCTACGT+AGG 0.710567 2.2:-6412150 MS.gene43869:CDS
AAAGCTGATGAGACTGACAC+AGG 0.713134 2.2:-6411746 MS.gene43869:CDS
GATGATGATTTCAGTGACGA+TGG 0.716981 2.2:-6411462 MS.gene43869:CDS
ATGACCACTGATATTAATGG+CGG 0.732523 2.2:+6414445 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATAAATTCTTTTATTG+TGG - chr2.2:6411666-6411685 MS.gene43869:intron 10.0%
!!! AACATTTGTATTGTTTATTT+TGG + chr2.2:6413215-6413234 None:intergenic 15.0%
!!! ACATTTGTATTGTTTATTTT+GGG + chr2.2:6413214-6413233 None:intergenic 15.0%
!! AAAGTTCATAAATATACACA+AGG + chr2.2:6414154-6414173 None:intergenic 20.0%
!! AGCTAAAATATATAGCAAAA+AGG + chr2.2:6413864-6413883 None:intergenic 20.0%
!! ATAGCTTAATTGAGTTATAA+TGG - chr2.2:6414184-6414203 MS.gene43869:intron 20.0%
!! ATTATAACTCAATTAAGCTA+TGG + chr2.2:6414185-6414204 None:intergenic 20.0%
!! CAAATTTGATATACATACAT+TGG - chr2.2:6412716-6412735 MS.gene43869:CDS 20.0%
!! CTAAAATATATAGCAAAAAG+GGG + chr2.2:6413862-6413881 None:intergenic 20.0%
!! CTAAAATGCATGTATATTTA+AGG - chr2.2:6414016-6414035 MS.gene43869:CDS 20.0%
!! CTATTTATATCTTTACTTCA+GGG - chr2.2:6412462-6412481 MS.gene43869:intron 20.0%
!! GCTAAAATATATAGCAAAAA+GGG + chr2.2:6413863-6413882 None:intergenic 20.0%
!! TAAAATATATAGCAAAAAGG+GGG + chr2.2:6413861-6413880 None:intergenic 20.0%
!! TCTATTTATATCTTTACTTC+AGG - chr2.2:6412461-6412480 MS.gene43869:intron 20.0%
!! TCTTATCAACATGAAAATAA+TGG - chr2.2:6413777-6413796 MS.gene43869:intron 20.0%
!! TTAAACTGTAAAGATATACA+TGG + chr2.2:6412431-6412450 None:intergenic 20.0%
!! TTAATTGAGTTATAATGGTA+TGG - chr2.2:6414189-6414208 MS.gene43869:intron 20.0%
!! TTGTAAATATTTACTATCTC+CGG - chr2.2:6411966-6411985 MS.gene43869:CDS 20.0%
!! TTTGTAATGTATATCATGAA+GGG + chr2.2:6413049-6413068 None:intergenic 20.0%
!!! AAAGTCATTTTTTAGTAACA+CGG + chr2.2:6411253-6411272 None:intergenic 20.0%
!!! AATATACATGCATTTTAGAT+AGG + chr2.2:6414014-6414033 None:intergenic 20.0%
!!! AATTCTTTTATTGTGGTTTA+CGG - chr2.2:6411673-6411692 MS.gene43869:intron 20.0%
!!! TTACATATTTGTTTTTAGCA+GGG + chr2.2:6413126-6413145 None:intergenic 20.0%
!!! TTTACATATTTGTTTTTAGC+AGG + chr2.2:6413127-6413146 None:intergenic 20.0%
!!! TTTGCTATAACTAATATGTA+GGG - chr2.2:6412338-6412357 MS.gene43869:CDS 20.0%
!!! TTTTGCTATAACTAATATGT+AGG - chr2.2:6412337-6412356 MS.gene43869:CDS 20.0%
! AAAACGTTCTCTTAGTATTT+CGG - chr2.2:6414554-6414573 MS.gene43869:CDS 25.0%
! AAAATACGGAAAATCATTAC+TGG + chr2.2:6411707-6411726 None:intergenic 25.0%
! AAAATATATAGCAAAAAGGG+GGG + chr2.2:6413860-6413879 None:intergenic 25.0%
! AAATAGTCACTTATTCAAGA+TGG + chr2.2:6412191-6412210 None:intergenic 25.0%
! AAATGTGAAAAAAGATTGTC+AGG - chr2.2:6411383-6411402 MS.gene43869:intron 25.0%
! AATAGTCACTTATTCAAGAT+GGG + chr2.2:6412190-6412209 None:intergenic 25.0%
! ATCAACCACAAGAAAAAATA+CGG + chr2.2:6411721-6411740 None:intergenic 25.0%
! ATTGATAAATAGAACAGAAC+CGG + chr2.2:6411988-6412007 None:intergenic 25.0%
! ATTTGATATACATACATTGG+AGG - chr2.2:6412719-6412738 MS.gene43869:CDS 25.0%
! GTAATGACTACTGATATTAA+TGG + chr2.2:6411150-6411169 None:intergenic 25.0%
! GTCAATTTATTAGAAATACG+AGG + chr2.2:6411066-6411085 None:intergenic 25.0%
! GTTTCAAACATTCAATAAAG+AGG + chr2.2:6411223-6411242 None:intergenic 25.0%
! GTTTGTAATGTATATCATGA+AGG + chr2.2:6413050-6413069 None:intergenic 25.0%
! TATTGTAACTGTTATTGATG+AGG - chr2.2:6413324-6413343 MS.gene43869:intron 25.0%
! TGAAAATGGTGACAAATTAT+AGG + chr2.2:6412150-6412169 None:intergenic 25.0%
! TTCTATAAAAATAACCACGA+AGG + chr2.2:6412034-6412053 None:intergenic 25.0%
!! ACAGTTACAATATTTCTACT+AGG + chr2.2:6413316-6413335 None:intergenic 25.0%
!! AGAAAATATTTTTCCCTTCT+GGG - chr2.2:6412050-6412069 MS.gene43869:CDS 25.0%
!! TAAGTGACTATTTTCTTTGA+TGG - chr2.2:6412198-6412217 MS.gene43869:CDS 25.0%
!! TAGAAAATATTTTTCCCTTC+TGG - chr2.2:6412049-6412068 MS.gene43869:CDS 25.0%
!!! AAGTCATTTTTTAGTAACAC+GGG + chr2.2:6411252-6411271 None:intergenic 25.0%
!!! AATCTTCAGTTTGGTTTTTA+TGG - chr2.2:6413586-6413605 MS.gene43869:intron 25.0%
!!! ATCTCAGTTTTTCAAATCAT+AGG - chr2.2:6411886-6411905 MS.gene43869:CDS 25.0%
!!! ATCTTCAGTTTGGTTTTTAT+GGG - chr2.2:6413587-6413606 MS.gene43869:intron 25.0%
!!! ATGTATATCAAATTTGCTAG+AGG + chr2.2:6412712-6412731 None:intergenic 25.0%
!!! ATTGTACTGCATTTTGAAAA+TGG + chr2.2:6412164-6412183 None:intergenic 25.0%
!!! ATTTTCCGTATTTTTTCTTG+TGG - chr2.2:6411713-6411732 MS.gene43869:CDS 25.0%
!!! CTATATATTTTAGCTCAAAG+AGG - chr2.2:6413869-6413888 MS.gene43869:CDS 25.0%
AAACCAAACTGAAGATTTAC+AGG + chr2.2:6413583-6413602 None:intergenic 30.0%
AAATAGCATGATCTGATAAG+AGG + chr2.2:6411093-6411112 None:intergenic 30.0%
ACGGTTGAATTCAAAACAAA+TGG - chr2.2:6412761-6412780 MS.gene43869:CDS 30.0%
AGCTTGTAAAAAGGAGAATT+TGG - chr2.2:6411845-6411864 MS.gene43869:CDS 30.0%
CAGTATAAATATAGTGCTGT+GGG + chr2.2:6410923-6410942 None:intergenic 30.0%
CATGATATACATTACAAACG+AGG - chr2.2:6413051-6413070 MS.gene43869:intron 30.0%
CCTGGATTGTTCTTATATTT+CGG + chr2.2:6413156-6413175 None:intergenic 30.0%
CTCATATTCTTCTTTGCTTA+TGG - chr2.2:6414485-6414504 MS.gene43869:CDS 30.0%
CTTTGGCAAAACAAAGTATA+TGG + chr2.2:6411790-6411809 None:intergenic 30.0%
GACAACTACTTTGATAGAAT+CGG - chr2.2:6411633-6411652 MS.gene43869:intron 30.0%
GTTAATTCATTGGACTGTAA+CGG - chr2.2:6413478-6413497 MS.gene43869:intron 30.0%
TGAATGACCACTGATATTAA+TGG + chr2.2:6410974-6410993 None:intergenic 30.0%
TTAATTCATTGGACTGTAAC+GGG - chr2.2:6413479-6413498 MS.gene43869:intron 30.0%
TTACAGTCCAATGAATTAAC+AGG + chr2.2:6413478-6413497 None:intergenic 30.0%
TTACTTAATGTCATGCAGAT+GGG - chr2.2:6412995-6413014 MS.gene43869:intron 30.0%
TTTGCAAGAAGCTTGTAAAA+AGG - chr2.2:6411836-6411855 MS.gene43869:CDS 30.0%
! AAAAAGGAGAATTTGGAATC+TGG - chr2.2:6411852-6411871 MS.gene43869:CDS 30.0%
! ATTTGGAATCTGGATTTATG+TGG - chr2.2:6411862-6411881 MS.gene43869:CDS 30.0%
! TACAACTGTATTTGTTAGGA+GGG - chr2.2:6411506-6411525 MS.gene43869:CDS 30.0%
! TGATGAAGAGTATGATGATT+TGG - chr2.2:6414290-6414309 MS.gene43869:intron 30.0%
! TTGTATCAACTGATTCCATT+AGG - chr2.2:6412508-6412527 MS.gene43869:intron 30.0%
!! AATAAAGTATCGTCAAAACC+TGG - chr2.2:6414416-6414435 MS.gene43869:intron 30.0%
!! AATGGCTTGTTTGTATCAAA+TGG - chr2.2:6413795-6413814 MS.gene43869:intron 30.0%
!! ATGGCTTGTTTGTATCAAAT+GGG - chr2.2:6413796-6413815 MS.gene43869:intron 30.0%
!! TCTGAAGGAATTGTTTTATC+AGG - chr2.2:6411342-6411361 MS.gene43869:intron 30.0%
!! TGCCATTTGAGTTGTATAAA+AGG - chr2.2:6411481-6411500 MS.gene43869:CDS 30.0%
!!! AGTCATTTTTTAGTAACACG+GGG + chr2.2:6411251-6411270 None:intergenic 30.0%
!!! ATACTTTGTTTTGCCAAAGT+GGG - chr2.2:6411791-6411810 MS.gene43869:CDS 30.0%
!!! TATACTTTGTTTTGCCAAAG+TGG - chr2.2:6411790-6411809 MS.gene43869:CDS 30.0%
!!! TATACTTTTTCATGTTGTGC+AGG - chr2.2:6414236-6414255 MS.gene43869:intron 30.0%
AAAAAGGAGAGCGAAAAAGA+TGG - chr2.2:6412638-6412657 MS.gene43869:CDS 35.0%
AAAAGGAAAACCCCTTGTTA+TGG - chr2.2:6412556-6412575 MS.gene43869:CDS 35.0%
AAATATACACAAGGCAACTG+AGG + chr2.2:6414145-6414164 None:intergenic 35.0%
AACGGACAAGAGAATGAAAT+TGG - chr2.2:6413517-6413536 MS.gene43869:intron 35.0%
AATGGTTGAGACTCTGAATT+TGG + chr2.2:6414050-6414069 None:intergenic 35.0%
AATTCAGAGTCTCAACCATT+TGG - chr2.2:6414050-6414069 MS.gene43869:CDS 35.0%
AGAGATTGACGATCAATTAG+AGG - chr2.2:6413920-6413939 MS.gene43869:CDS 35.0%
AGATAGGCTAATCACTTCAT+GGG - chr2.2:6412830-6412849 MS.gene43869:CDS 35.0%
ATAGACTAAATGTTCCTTCG+TGG - chr2.2:6412017-6412036 MS.gene43869:CDS 35.0%
ATGACCACTGATATTAATGG+CGG + chr2.2:6410971-6410990 None:intergenic 35.0%
ATGGCTCTTGTAAATACTGA+TGG - chr2.2:6413433-6413452 MS.gene43869:intron 35.0%
ATGGTTGAGACTCTGAATTT+GGG + chr2.2:6414049-6414068 None:intergenic 35.0%
ATGTGCCTGAAAATGGATAT+TGG - chr2.2:6414322-6414341 MS.gene43869:intron 35.0%
ATTCAGAGTCTCAACCATTT+GGG - chr2.2:6414051-6414070 MS.gene43869:CDS 35.0%
ATTCAGTAATTTCACCCAGA+AGG + chr2.2:6412067-6412086 None:intergenic 35.0%
CAAAGAAGAATATGAGCAGA+AGG + chr2.2:6414481-6414500 None:intergenic 35.0%
CAAGCCAATTTGATTCTAGT+TGG - chr2.2:6411909-6411928 MS.gene43869:CDS 35.0%
CCGAAATATAAGAACAATCC+AGG - chr2.2:6413153-6413172 MS.gene43869:CDS 35.0%
CGGAAACATGGTAGATATAA+TGG + chr2.2:6410886-6410905 None:intergenic 35.0%
CTTACTTAATGTCATGCAGA+TGG - chr2.2:6412994-6413013 MS.gene43869:intron 35.0%
GAAATTGGAAGTCCAATGTA+TGG - chr2.2:6413532-6413551 MS.gene43869:intron 35.0%
GAACCTGTAAATCTTCAGTT+TGG - chr2.2:6413577-6413596 MS.gene43869:intron 35.0%
GATATACATACATTGGAGGA+GGG - chr2.2:6412723-6412742 MS.gene43869:CDS 35.0%
GCAGTATAAATATAGTGCTG+TGG + chr2.2:6410924-6410943 None:intergenic 35.0%
GTTGTATGTCTCATTCTCTT+GGG - chr2.2:6412906-6412925 MS.gene43869:CDS 35.0%
TAATCACTTCATGGGAAGAA+CGG - chr2.2:6412838-6412857 MS.gene43869:CDS 35.0%
TAATGGCAGATGCAAGATTA+TGG + chr2.2:6411133-6411152 None:intergenic 35.0%
TACTTAATGTCATGCAGATG+GGG - chr2.2:6412996-6413015 MS.gene43869:intron 35.0%
TAGATAGGCTAATCACTTCA+TGG - chr2.2:6412829-6412848 MS.gene43869:CDS 35.0%
TATCTTTACTTCAGGGAAGT+CGG - chr2.2:6412469-6412488 MS.gene43869:intron 35.0%
TCAAAACAAATGGCTGTTGA+AGG - chr2.2:6412771-6412790 MS.gene43869:CDS 35.0%
TCTCTTAGTATTTCGGCTTT+GGG - chr2.2:6414561-6414580 MS.gene43869:CDS 35.0%
TGACAAACATATTCATGAGG+AGG - chr2.2:6413974-6413993 MS.gene43869:CDS 35.0%
TGATATACATACATTGGAGG+AGG - chr2.2:6412722-6412741 MS.gene43869:CDS 35.0%
TGCTTATGGAAAAAGCTGAA+AGG - chr2.2:6414499-6414518 MS.gene43869:CDS 35.0%
TGGCTCTTGTAAATACTGAT+GGG - chr2.2:6413434-6413453 MS.gene43869:intron 35.0%
TGGTGACAAACATATTCATG+AGG - chr2.2:6413971-6413990 MS.gene43869:CDS 35.0%
TGTTGTATGTCTCATTCTCT+TGG - chr2.2:6412905-6412924 MS.gene43869:CDS 35.0%
TTACTGTCAAGGAAAGATCA+TGG - chr2.2:6411447-6411466 MS.gene43869:CDS 35.0%
TTCAGGAGTAAAGTCACTAT+TGG - chr2.2:6414363-6414382 MS.gene43869:intron 35.0%
TTCAGTAATTTCACCCAGAA+GGG + chr2.2:6412066-6412085 None:intergenic 35.0%
TTCCAAATTACCTCCTTTGA+AGG + chr2.2:6413742-6413761 None:intergenic 35.0%
TTCTCTTAGTATTTCGGCTT+TGG - chr2.2:6414560-6414579 MS.gene43869:CDS 35.0%
TTCTTATCAGATCAGCAGAA+GGG - chr2.2:6411275-6411294 MS.gene43869:intron 35.0%
TTTCAATTGATCCAACGACA+AGG - chr2.2:6413394-6413413 MS.gene43869:intron 35.0%
! AAAGGAAAACCCCTTGTTAT+GGG - chr2.2:6412557-6412576 MS.gene43869:CDS 35.0%
! ATCATGAAGGGTATGATTGA+AGG + chr2.2:6413037-6413056 None:intergenic 35.0%
! CGCCTTTTATACAACTCAAA+TGG + chr2.2:6411486-6411505 None:intergenic 35.0%
! GAGAGGTTTTGCTAATGAAA+AGG - chr2.2:6412539-6412558 MS.gene43869:CDS 35.0%
! GTACAACTGTATTTGTTAGG+AGG - chr2.2:6411505-6411524 MS.gene43869:CDS 35.0%
! GTGAAAGTATACAAACTAGC+TGG + chr2.2:6411753-6411772 None:intergenic 35.0%
! TCCTTTTGAGCTCAAAGAAT+TGG + chr2.2:6413371-6413390 None:intergenic 35.0%
! TCTGACCAATATCCATTTTC+AGG + chr2.2:6414330-6414349 None:intergenic 35.0%
! TTTTGAGCTCAAAGAATTGG+CGG + chr2.2:6413368-6413387 None:intergenic 35.0%
! TTTTTGAACTCACAAGGAGT+GGG - chr2.2:6411298-6411317 MS.gene43869:intron 35.0%
!! ATGAAGTGATTAGCCTATCT+AGG + chr2.2:6412830-6412849 None:intergenic 35.0%
!! GCAGAATTTTAGCCATAATC+TGG - chr2.2:6410942-6410961 MS.gene43869:CDS 35.0%
!! GGTAGATATAATGGATGTTG+CGG + chr2.2:6410877-6410896 None:intergenic 35.0%
!! TGTTTTGAATTCAACCGTTC+AGG + chr2.2:6412759-6412778 None:intergenic 35.0%
AAAGAGGATCTTTCAGTGCA+TGG - chr2.2:6413885-6413904 MS.gene43869:CDS 40.0%
AATGGCTGTTGAAGGATTCA+AGG - chr2.2:6412779-6412798 MS.gene43869:CDS 40.0%
AGATATCGTCTGTGATGTTC+TGG - chr2.2:6411539-6411558 MS.gene43869:intron 40.0%
AGTTCACCAAGGATGTCTAA+TGG - chr2.2:6413715-6413734 MS.gene43869:intron 40.0%
ATCTACCATGTTTCCGCTAT+CGG - chr2.2:6410890-6410909 MS.gene43869:CDS 40.0%
ATGCAAGATGTGCCTGAAAA+TGG - chr2.2:6414315-6414334 MS.gene43869:intron 40.0%
ATTCCGTATATTGCCCACTT+TGG + chr2.2:6411807-6411826 None:intergenic 40.0%
ATTGACGATCAATTAGAGGC+GGG - chr2.2:6413924-6413943 MS.gene43869:CDS 40.0%
CTGGCTGAGTACAAATATGT+GGG - chr2.2:6411558-6411577 MS.gene43869:intron 40.0%
CTTCTTATCAGATCAGCAGA+AGG - chr2.2:6411274-6411293 MS.gene43869:intron 40.0%
GACCTTCAAAGGAGGTAATT+TGG - chr2.2:6413737-6413756 MS.gene43869:intron 40.0%
GAGTAAAGTCACTATTGGTC+AGG - chr2.2:6414368-6414387 MS.gene43869:intron 40.0%
GATCTTTCCTTGACAGTAAG+TGG + chr2.2:6411446-6411465 None:intergenic 40.0%
GATGATGATTTCAGTGACGA+TGG - chr2.2:6413951-6413970 MS.gene43869:CDS 40.0%
GATTGACGATCAATTAGAGG+CGG - chr2.2:6413923-6413942 MS.gene43869:CDS 40.0%
GCCAATTCTTTGAGCTCAAA+AGG - chr2.2:6413367-6413386 MS.gene43869:intron 40.0%
GGCGTACAACTGTATTTGTT+AGG - chr2.2:6411502-6411521 MS.gene43869:CDS 40.0%
GGTCATATACTTTGCACGTA+CGG + chr2.2:6413098-6413117 None:intergenic 40.0%
GTCAATCACCATTTCACTCT+GGG + chr2.2:6412805-6412824 None:intergenic 40.0%
TAAAGTCACTATTGGTCAGG+AGG - chr2.2:6414371-6414390 MS.gene43869:intron 40.0%
TACAAACGAGGACAAGCATA+TGG - chr2.2:6413063-6413082 MS.gene43869:intron 40.0%
TCAGGTTTCGATGCTTCTAA+AGG - chr2.2:6411360-6411379 MS.gene43869:intron 40.0%
TCCACCATTTCATAATGCCA+CGG + chr2.2:6410833-6410852 None:intergenic 40.0%
TCCAGGATTATCTCTGTAAG+CGG - chr2.2:6413170-6413189 MS.gene43869:CDS 40.0%
TCTGGCTGAGTACAAATATG+TGG - chr2.2:6411557-6411576 MS.gene43869:intron 40.0%
TGCCACAAACTAAGCAAAAC+TGG + chr2.2:6412364-6412383 None:intergenic 40.0%
TGTATCACAGTCACTACCTA+AGG - chr2.2:6412665-6412684 MS.gene43869:CDS 40.0%
TGTCAATCACCATTTCACTC+TGG + chr2.2:6412806-6412825 None:intergenic 40.0%
TTCATTGCCTTTGCAAGCAT+AGG + chr2.2:6414080-6414099 None:intergenic 40.0%
TTGCAGAAGCAAAGGCAAAA+AGG - chr2.2:6412622-6412641 MS.gene43869:CDS 40.0%
TTGCCAAAGTGGGCAATATA+CGG - chr2.2:6411801-6411820 MS.gene43869:CDS 40.0%
TTGGGTCGTTCAATACTTCT+TGG - chr2.2:6412924-6412943 MS.gene43869:CDS 40.0%
! AAAGAGTCCGTTGTTGTTGA+GGG - chr2.2:6412861-6412880 MS.gene43869:CDS 40.0%
! AAGAGAACGTTTTCTCAGCT+TGG + chr2.2:6414547-6414566 None:intergenic 40.0%
! ACTGATGCTTTCAAGTCTGA+AGG - chr2.2:6411327-6411346 MS.gene43869:intron 40.0%
! AGGTTCTTCAAGGCATCTTA+TGG - chr2.2:6413414-6413433 MS.gene43869:intron 40.0%
! CCAATTTGATTCTAGTTGGC+GGG - chr2.2:6411913-6411932 MS.gene43869:CDS 40.0%
! GAAGGGTTTTTGAACTCACA+AGG - chr2.2:6411292-6411311 MS.gene43869:intron 40.0%
! GATGTCTAATGGACCTTCAA+AGG - chr2.2:6413726-6413745 MS.gene43869:intron 40.0%
! GCCAATTTGATTCTAGTTGG+CGG - chr2.2:6411912-6411931 MS.gene43869:CDS 40.0%
! GTTTTTATGGGATCAGTGCT+TGG - chr2.2:6413599-6413618 MS.gene43869:intron 40.0%
! GTTTTTGAACTCACAAGGAG+TGG - chr2.2:6411297-6411316 MS.gene43869:intron 40.0%
! TGTAAATACTGATGGGTCTG+TGG - chr2.2:6413441-6413460 MS.gene43869:intron 40.0%
!! AGTATTTCGGCTTTGGGAAA+AGG - chr2.2:6414567-6414586 MS.gene43869:CDS 40.0%
!! CTTTTTCATGTTGTGCAGGT+AGG - chr2.2:6414240-6414259 MS.gene43869:intron 40.0%
!! TAAGGAGCACCAGAGATAAT+CGG + chr2.2:6414612-6414631 None:intergenic 40.0%
!!! AGTTTTGCTTAGTTTGTGGC+AGG - chr2.2:6412363-6412382 MS.gene43869:CDS 40.0%
!!! ATTTGTTTTTAGCAGGGTCC+AGG + chr2.2:6413120-6413139 None:intergenic 40.0%
!!! TTCCATGCATTTTAGCTCCT+AGG + chr2.2:6414398-6414417 None:intergenic 40.0%
!!! TTTGTTTTTAGCAGGGTCCA+GGG + chr2.2:6413119-6413138 None:intergenic 40.0%
AAAAGGTAGTTCCACAGTCC+AGG - chr2.2:6414584-6414603 MS.gene43869:CDS 45.0%
AAAGCTGATGAGACTGACAC+AGG - chr2.2:6413667-6413686 MS.gene43869:intron 45.0%
AAGGGGGGAAAATCAGATGA+AGG + chr2.2:6413845-6413864 None:intergenic 45.0%
AATATAGTGCTGTGGGCATG+AGG + chr2.2:6410916-6410935 None:intergenic 45.0%
ACCTCTCATCATGTGCCTAA+TGG + chr2.2:6412526-6412545 None:intergenic 45.0%
ACGTGCAAAGTATATGACCC+TGG - chr2.2:6413099-6413118 MS.gene43869:intron 45.0%
AGGGGGGAAAATCAGATGAA+GGG + chr2.2:6413844-6413863 None:intergenic 45.0%
AGTGGGCAATATACGGAATC+TGG - chr2.2:6411808-6411827 MS.gene43869:CDS 45.0%
ATCAAGTCTGCTCTCTGGTT+TGG + chr2.2:6411585-6411604 None:intergenic 45.0%
ATGTATGGACCCTTGCGAAT+TGG - chr2.2:6413547-6413566 MS.gene43869:intron 45.0%
ATTCAAGGCCCAGAGTGAAA+TGG - chr2.2:6412794-6412813 MS.gene43869:CDS 45.0%
ATTCGCAAGGGTCCATACAT+TGG + chr2.2:6413547-6413566 None:intergenic 45.0%
CAACAAATAAACTGCTGCCG+TGG - chr2.2:6410813-6410832 MS.gene43869:CDS 45.0%
CACGGCAGCAGTTTATTTGT+TGG + chr2.2:6410815-6410834 None:intergenic 45.0%
CAGACGATGATGAAGAGTTC+AGG - chr2.2:6414346-6414365 MS.gene43869:intron 45.0%
CCAGGATTATCTCTGTAAGC+GGG - chr2.2:6413171-6413190 MS.gene43869:CDS 45.0%
CCCGCCAACTAGAATCAAAT+TGG + chr2.2:6411916-6411935 None:intergenic 45.0%
CCTAAGGATGAAGCAACTGA+AGG - chr2.2:6412681-6412700 MS.gene43869:CDS 45.0%
CCTTCAGTTGCTTCATCCTT+AGG + chr2.2:6412684-6412703 None:intergenic 45.0%
GAAGGTCCATTAGACATCCT+TGG + chr2.2:6413724-6413743 None:intergenic 45.0%
GAATATGAGCAGAAGGACTC+TGG + chr2.2:6414474-6414493 None:intergenic 45.0%
GACCTAGGAGCTAAAATGCA+TGG - chr2.2:6414393-6414412 MS.gene43869:intron 45.0%
GCATCCGCCATTAATATCAG+TGG - chr2.2:6410964-6410983 MS.gene43869:CDS 45.0%
GGCTTGGCCTGTTAATTCAT+TGG - chr2.2:6413468-6413487 MS.gene43869:intron 45.0%
GTGAACACCCTCAACAACAA+CGG + chr2.2:6412871-6412890 None:intergenic 45.0%
TAGGCAACCACTTACTGTCA+AGG - chr2.2:6411436-6411455 MS.gene43869:intron 45.0%
TAGGTAGAGGCCCATAACAA+GGG + chr2.2:6412570-6412589 None:intergenic 45.0%
TCACAGATTCCTTCCGTTCT+CGG + chr2.2:6412230-6412249 None:intergenic 45.0%
TCCAACGACAAGGTTCTTCA+AGG - chr2.2:6413404-6413423 MS.gene43869:intron 45.0%
TCCATTAGGCACATGATGAG+AGG - chr2.2:6412522-6412541 MS.gene43869:intron 45.0%
TCTGCCTTTCCAATTCGCAA+GGG + chr2.2:6413559-6413578 None:intergenic 45.0%
TGCTCGAGGAAAACAGATGT+AGG - chr2.2:6411417-6411436 MS.gene43869:intron 45.0%
TGGTGATTGACAGCCTAGAT+AGG - chr2.2:6412814-6412833 MS.gene43869:CDS 45.0%
TTCTGCCTTTCCAATTCGCA+AGG + chr2.2:6413560-6413579 None:intergenic 45.0%
TTGTGTGGAACTAGTGGTTG+TGG - chr2.2:6412258-6412277 MS.gene43869:CDS 45.0%
TTTGCTTCTGCAACAGCAAC+AGG + chr2.2:6412615-6412634 None:intergenic 45.0%
! GAAAGAGTCCGTTGTTGTTG+AGG - chr2.2:6412860-6412879 MS.gene43869:CDS 45.0%
! GTCTAATGGACCTTCAAAGG+AGG - chr2.2:6413729-6413748 MS.gene43869:intron 45.0%
! GTGCTTTTGTGTGGAACTAG+TGG - chr2.2:6412252-6412271 MS.gene43869:CDS 45.0%
! TCTGTGACAGTGCTTTTGTG+TGG - chr2.2:6412243-6412262 MS.gene43869:CDS 45.0%
! TGTTGCTGTTGCAGAAGCAA+AGG - chr2.2:6412614-6412633 MS.gene43869:CDS 45.0%
! TTGATGGCAGAATCCGAGAA+CGG - chr2.2:6412214-6412233 MS.gene43869:CDS 45.0%
!! GGCCAGTTTTGCTTAGTTTG+TGG - chr2.2:6412359-6412378 MS.gene43869:CDS 45.0%
!! TAATGGCGGATGCCAGATTA+TGG + chr2.2:6410957-6410976 None:intergenic 45.0%
!! TGGTTCTAAGGAAGAGATCC+AGG + chr2.2:6414437-6414456 None:intergenic 45.0%
ACCCATCAACACTTCCAGCA+CGG + chr2.2:6413645-6413664 None:intergenic 50.0%
ACTATTGGTCAGGAGGACCT+AGG - chr2.2:6414378-6414397 MS.gene43869:intron 50.0%
AGGAGAGCGAAAAAGATGGC+TGG - chr2.2:6412642-6412661 MS.gene43869:CDS 50.0%
AGGTAGAGGCCCATAACAAG+GGG + chr2.2:6412569-6412588 None:intergenic 50.0%
ATCCACGTTGTCTGCATTGC+TGG - chr2.2:6412284-6412303 MS.gene43869:CDS 50.0%
ATGTTGCGGCCTGTTGCAAT+CGG + chr2.2:6410863-6410882 None:intergenic 50.0%
CACCAGAGATAATCGGATCC+TGG + chr2.2:6414605-6414624 None:intergenic 50.0%
CATCCTTGGTGAACTACAGC+AGG + chr2.2:6413710-6413729 None:intergenic 50.0%
CCCGCTTACAGAGATAATCC+TGG + chr2.2:6413174-6413193 None:intergenic 50.0%
CCTACGTAGACAGCTGAACA+CGG + chr2.2:6413266-6413285 None:intergenic 50.0%
CTAGCATCAAGTCTGCTCTC+TGG + chr2.2:6411590-6411609 None:intergenic 50.0%
GATAATCGGATCCTGGACTG+TGG + chr2.2:6414598-6414617 None:intergenic 50.0%
GCAAGCATAGGCAACCCAAA+TGG + chr2.2:6414068-6414087 None:intergenic 50.0%
GCCGTGGCATTATGAAATGG+TGG - chr2.2:6410829-6410848 MS.gene43869:CDS 50.0%
GCCTTGAAGAACCTTGTCGT+TGG + chr2.2:6413408-6413427 None:intergenic 50.0%
GCTGCCGTGGCATTATGAAA+TGG - chr2.2:6410826-6410845 MS.gene43869:CDS 50.0%
GTAGGTAGAGGCCCATAACA+AGG + chr2.2:6412571-6412590 None:intergenic 50.0%
GTCCAGGATCCGATTATCTC+TGG - chr2.2:6414600-6414619 MS.gene43869:CDS 50.0%
GTCTACGTAGGCGTGAAGTT+GGG - chr2.2:6413275-6413294 MS.gene43869:intron 50.0%
TACCAGCAATGCAGACAACG+TGG + chr2.2:6412289-6412308 None:intergenic 50.0%
TCTACGTAGGCGTGAAGTTG+GGG - chr2.2:6413276-6413295 MS.gene43869:intron 50.0%
TGGACCCTTGCGAATTGGAA+AGG - chr2.2:6413552-6413571 MS.gene43869:intron 50.0%
TGGGTTGCCTATGCTTGCAA+AGG - chr2.2:6414070-6414089 MS.gene43869:CDS 50.0%
TGTCTACGTAGGCGTGAAGT+TGG - chr2.2:6413274-6413293 MS.gene43869:intron 50.0%
TTACTTCAGGGAAGTCGGCT+GGG - chr2.2:6412474-6412493 MS.gene43869:intron 50.0%
TTTACTTCAGGGAAGTCGGC+TGG - chr2.2:6412473-6412492 MS.gene43869:intron 50.0%
! ACTGTAACGGGAAGCCTGTT+TGG - chr2.2:6413491-6413510 MS.gene43869:intron 50.0%
! CAGACTTGATGCTAGCTTGC+AGG - chr2.2:6411595-6411614 MS.gene43869:intron 50.0%
! CTGTAACGGGAAGCCTGTTT+GGG - chr2.2:6413492-6413511 MS.gene43869:intron 50.0%
! TACTGATGGGTCTGTGGCAA+AGG - chr2.2:6413447-6413466 MS.gene43869:intron 50.0%
! TGTAACGGGAAGCCTGTTTG+GGG - chr2.2:6413493-6413512 MS.gene43869:intron 50.0%
!! CTGGCTCACTTCTGGTTCTA+AGG + chr2.2:6414449-6414468 None:intergenic 50.0%
!! GATTCTGTGCCGATTGCAAC+AGG - chr2.2:6410851-6410870 MS.gene43869:CDS 50.0%
ACGGCTTGTACCACCATCAC+AGG + chr2.2:6413626-6413645 None:intergenic 55.0%
AGGAAGCTTCTGCTTGCTCG+AGG - chr2.2:6411403-6411422 MS.gene43869:intron 55.0%
ATCAGTGCTTGGCCCTGTGA+TGG - chr2.2:6413610-6413629 MS.gene43869:intron 55.0%
ATGGGTCTGTGGCAAAGGCT+TGG - chr2.2:6413452-6413471 MS.gene43869:intron 55.0%
CATACATTGGAGGAGGGCTG+TGG - chr2.2:6412729-6412748 MS.gene43869:CDS 55.0%
CCGTGTTCAGCTGTCTACGT+AGG - chr2.2:6413263-6413282 MS.gene43869:intron 55.0%
CCTCCTGCTGTAGTTCACCA+AGG - chr2.2:6413704-6413723 MS.gene43869:intron 55.0%
CCTTGGTGAACTACAGCAGG+AGG + chr2.2:6413707-6413726 None:intergenic 55.0%
CGGCTTGTACCACCATCACA+GGG + chr2.2:6413625-6413644 None:intergenic 55.0%
GACAGCTGAACACGGTAGCA+TGG + chr2.2:6413258-6413277 None:intergenic 55.0%
GAGCAGAAGGACTCTGGTAC+TGG + chr2.2:6414468-6414487 None:intergenic 55.0%
GCAGGTAGGTTCAGTTGACG+AGG - chr2.2:6414254-6414273 MS.gene43869:intron 55.0%
GCTGAACACGGTAGCATGGA+TGG + chr2.2:6413254-6413273 None:intergenic 55.0%
TCTTGTCCGTTGCCCCAAAC+AGG + chr2.2:6413508-6413527 None:intergenic 55.0%
TGAAAGGCGACTGCCACCAT+CGG - chr2.2:6414515-6414534 MS.gene43869:CDS 55.0%
TGGCAGAATCCGAGAACGGA+AGG - chr2.2:6412218-6412237 MS.gene43869:CDS 55.0%
!! AGCCGTGCTGGAAGTGTTGA+TGG - chr2.2:6413640-6413659 MS.gene43869:intron 55.0%
!! AGCTTGGCTTTTCCCGATGG+TGG + chr2.2:6414531-6414550 None:intergenic 55.0%
!! CTCAGCTTGGCTTTTCCCGA+TGG + chr2.2:6414534-6414553 None:intergenic 55.0%
!! CTCTGGTACTGGCTCACTTC+TGG + chr2.2:6414457-6414476 None:intergenic 55.0%
!! GCCGTGCTGGAAGTGTTGAT+GGG - chr2.2:6413641-6413660 MS.gene43869:intron 55.0%
!! TGAGGCCGATAGCGGAAACA+TGG + chr2.2:6410898-6410917 None:intergenic 55.0%
AGTGCTTGGCCCTGTGATGG+TGG - chr2.2:6413613-6413632 MS.gene43869:intron 60.0%
CAAGCACTCGCCTGCATGGT+AGG + chr2.2:6412589-6412608 None:intergenic 60.0%
CTACCATGCAGGCGAGTGCT+TGG - chr2.2:6412587-6412606 MS.gene43869:CDS 60.0%
CTCGCCTGCATGGTAGGTAG+AGG + chr2.2:6412583-6412602 None:intergenic 60.0%
GAAAGGCGACTGCCACCATC+GGG - chr2.2:6414516-6414535 MS.gene43869:CDS 60.0%
GATCCAAGCACTCGCCTGCA+TGG + chr2.2:6412593-6412612 None:intergenic 60.0%
TGGGCCTCTACCTACCATGC+AGG - chr2.2:6412576-6412595 MS.gene43869:CDS 60.0%
TGTGGGCATGAGGCCGATAG+CGG + chr2.2:6410906-6410925 None:intergenic 60.0%
! GATGGTGGTACAAGCCGTGC+TGG - chr2.2:6413628-6413647 MS.gene43869:intron 60.0%
! GGGAAGCCTGTTTGGGGCAA+CGG - chr2.2:6413499-6413518 MS.gene43869:intron 60.0%
AGGGCTGTGGTGCGCCTGAA+CGG - chr2.2:6412742-6412761 MS.gene43869:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 6410803 6414632 6410803 ID=MS.gene43869
chr2.2 mRNA 6410803 6414632 6410803 ID=MS.gene43869.t1;Parent=MS.gene43869
chr2.2 exon 6414450 6414632 6414450 ID=MS.gene43869.t1.exon1;Parent=MS.gene43869.t1
chr2.2 CDS 6414450 6414632 6414450 ID=cds.MS.gene43869.t1;Parent=MS.gene43869.t1
chr2.2 exon 6413819 6414150 6413819 ID=MS.gene43869.t1.exon2;Parent=MS.gene43869.t1
chr2.2 CDS 6413819 6414150 6413819 ID=cds.MS.gene43869.t1;Parent=MS.gene43869.t1
chr2.2 exon 6413130 6413211 6413130 ID=MS.gene43869.t1.exon3;Parent=MS.gene43869.t1
chr2.2 CDS 6413130 6413211 6413130 ID=cds.MS.gene43869.t1;Parent=MS.gene43869.t1
chr2.2 exon 6412527 6412952 6412527 ID=MS.gene43869.t1.exon4;Parent=MS.gene43869.t1
chr2.2 CDS 6412527 6412952 6412527 ID=cds.MS.gene43869.t1;Parent=MS.gene43869.t1
chr2.2 exon 6411685 6412422 6411685 ID=MS.gene43869.t1.exon5;Parent=MS.gene43869.t1
chr2.2 CDS 6411685 6412422 6411685 ID=cds.MS.gene43869.t1;Parent=MS.gene43869.t1
chr2.2 exon 6411440 6411553 6411440 ID=MS.gene43869.t1.exon6;Parent=MS.gene43869.t1
chr2.2 CDS 6411440 6411553 6411440 ID=cds.MS.gene43869.t1;Parent=MS.gene43869.t1
chr2.2 exon 6410803 6411177 6410803 ID=MS.gene43869.t1.exon7;Parent=MS.gene43869.t1
chr2.2 CDS 6410803 6411177 6410803 ID=cds.MS.gene43869.t1;Parent=MS.gene43869.t1
Gene Sequence

>MS.gene43869

ATGGAACTACCAACAAATAAACTGCTGCCGTGGCATTATGAAATGGTGGATTCTGTGCCGATTGCAACAGGCCGCAACATCCATTATATCTACCATGTTTCCGCTATCGGCCTCATGCCCACAGCACTATATTTATACTGCAGAATTTTAGCCATAATCTGGCATCCGCCATTAATATCAGTGGTCATTCATTACTCACTATTTTGCATAATATACTTGATATCTTGTATATCTTAATGATCTCTCTATTGAAACTTAATCCTCGTATTTCTAATAAATTGACTTTTCCTCTTATCAGATCATGCTATTTATATTGCAGAATATTAGCCATAATCTTGCATCTGCCATTAATATCAGTAGTCATTACTCATTATTTTGCGTCTGCTAATTTACTTGATATCTTGTGTATCTAAATCACCTCTTTATTGAATGTTTGAAACTTAGTCCCCGTGTTACTAAAAAATGACTTTTCTTCTTATCAGATCAGCAGAAGGGTTTTTGAACTCACAAGGAGTGGGAGTTCTACTGATGCTTTCAAGTCTGAAGGAATTGTTTTATCAGGTTTCGATGCTTCTAAAGGAAATGTGAAAAAAGATTGTCAGGAAGCTTCTGCTTGCTCGAGGAAAACAGATGTAGGCAACCACTTACTGTCAAGGAAAGATCATGGAAGTAAGAGCGTGCCATTTGAGTTGTATAAAAGGCGTACAACTGTATTTGTTAGGAGGGAAACTTTTCTAGATATCGTCTGTGATGTTCTGGCTGAGTACAAATATGTGGGTCCAAACCAGAGAGCAGACTTGATGCTAGCTTGCAGGTATTTATATCTTTTTGACAACTACTTTGATAGAATCGGAATAGAAGTAAAATATAAATTCTTTTATTGTGGTTTACGGCATCTGCTCCAGTAATGATTTTCCGTATTTTTTCTTGTGGTTGATATTTAATGACCAGCTAGTTTGTATACTTTCACACGCATTTTCAAATCCATATACTTTGTTTTGCCAAAGTGGGCAATATACGGAATCTGGATTGATTTGCAAGAAGCTTGTAAAAAGGAGAATTTGGAATCTGGATTTATGTGGAATCTCAGTTTTTCAAATCATAGGCAAGCCAATTTGATTCTAGTTGGCGGGTCAAACAAATTATCTATTTTCTGTTTTTTATTGTAAATATTTACTATCTCCGGTTCTGTTCTATTTATCAATAAGCTCTTGATAGACTAAATGTTCCTTCGTGGTTATTTTTATAGAAAATATTTTTCCCTTCTGGGTGAAATTACTGAATCACAACACGAGCACAACATATTAACATTTGAAGTTCACTACAACTTAGTTAAAATTTATACCTATAATTTGTCACCATTTTCAAAATGCAGTACAATTTTCCCATCTTGAATAAGTGACTATTTTCTTTGATGGCAGAATCCGAGAACGGAAGGAATCTGTGACAGTGCTTTTGTGTGGAACTAGTGGTTGTGGCAAATCCACGTTGTCTGCATTGCTGGTATATTTGCATATAGAAGTAGTTTTTTTTTTTTTGCTATAACTAATATGTAGGGCCAGTTTTGCTTAGTTTGTGGCAGGATATGTAATTGCAGCGACTAATAATGAAAATGAAACTTAGTACCATGTATATCTTTACAGTTTAATAACTCAAGTTCTATTTATATCTTTACTTCAGGGAAGTCGGCTGGGAATCACAACAGTTGTATCAACTGATTCCATTAGGCACATGATGAGAGGTTTTGCTAATGAAAAGGAAAACCCCTTGTTATGGGCCTCTACCTACCATGCAGGCGAGTGCTTGGATCCTGTTGCTGTTGCAGAAGCAAAGGCAAAAAGGAGAGCGAAAAAGATGGCTGGTGTATCACAGTCACTACCTAAGGATGAAGCAACTGAAGGTCACACCTCTAGCAAATTTGATATACATACATTGGAGGAGGGCTGTGGTGCGCCTGAACGGTTGAATTCAAAACAAATGGCTGTTGAAGGATTCAAGGCCCAGAGTGAAATGGTGATTGACAGCCTAGATAGGCTAATCACTTCATGGGAAGAACGGAAAGAGTCCGTTGTTGTTGAGGGTGTTCACTTGAGTCTCAACTTTGTTGTATGTCTCATTCTCTTGGGTCGTTCAATACTTCTTGGATTCTTTTGTACGTAAATTGTATTGCTTTCATTTTCACATTACAACACTTACTTAATGTCATGCAGATGGGGCTTATGAAGAAACATCCTTCAATCATACCCTTCATGATATACATTACAAACGAGGACAAGCATATGGAACGATTTGCCGTACGTGCAAAGTATATGACCCTGGACCCTGCTAAAAACAAATATGTAAAGTATATCCGAAATATAAGAACAATCCAGGATTATCTCTGTAAGCGGGCTGACAAACATTTAGTTCCCAAAATAAACAATACAAATGTTGACAAGAGTGTAGCAGCCATCCATGCTACCGTGTTCAGCTGTCTACGTAGGCGTGAAGTTGGGGAACAGTTATATGATCCTAGTAGAAATATTGTAACTGTTATTGATGAGGAATATAGAAATCAATGTGCCGCCAATTCTTTGAGCTCAAAAGGAATGTTTCAATTGATCCAACGACAAGGTTCTTCAAGGCATCTTATGGCTCTTGTAAATACTGATGGGTCTGTGGCAAAGGCTTGGCCTGTTAATTCATTGGACTGTAACGGGAAGCCTGTTTGGGGCAACGGACAAGAGAATGAAATTGGAAGTCCAATGTATGGACCCTTGCGAATTGGAAAGGCAGAACCTGTAAATCTTCAGTTTGGTTTTTATGGGATCAGTGCTTGGCCCTGTGATGGTGGTACAAGCCGTGCTGGAAGTGTTGATGGGTCAAAAGCTGATGAGACTGACACAGGTAGTAGATATGTATCCTCCTGCTGTAGTTCACCAAGGATGTCTAATGGACCTTCAAAGGAGGTAATTTGGAATATTTTGTTTATCTTTCTTATCAACATGAAAATAATGGCTTGTTTGTATCAAATGGGAAGATATCAATTAAAATTTATTCCCTTCATCTGATTTTCCCCCCTTTTTGCTATATATTTTAGCTCAAAGAGGATCTTTCAGTGCATGGTAGTGATGAAGAAGAGATTGACGATCAATTAGAGGCGGGCAGTGATGATGATTTCAGTGACGATGGTGACAAACATATTCATGAGGAGGTAGTGTTAAATTTACCTATCTAAAATGCATGTATATTTAAGGAAATATACCCAAATTCAGAGTCTCAACCATTTGGGTTGCCTATGCTTGCAAAGGCAATGAATTGACGCTTGATGCTGAATTTATTATTAAAAAATTGTGAATGCCTCAGTTGCCTTGTGTATATTTATGAACTTTTGCAAATACCATAGCTTAATTGAGTTATAATGGTATGGAACTATCTTTATTGATTTCTAATGTATACTTTTTCATGTTGTGCAGGTAGGTTCAGTTGACGAGGAATCAACGAAGTCTGATGAAGAGTATGATGATTTGGCAATGCAAGATGTGCCTGAAAATGGATATTGGTCAGACGATGATGAAGAGTTCAGGAGTAAAGTCACTATTGGTCAGGAGGACCTAGGAGCTAAAATGCATGGAATAAAGTATCGTCAAAACCTGGATCTCTTCCTTAGAACCAGAAGTGAGCCAGTACCAGAGTCCTTCTGCTCATATTCTTCTTTGCTTATGGAAAAAGCTGAAAGGCGACTGCCACCATCGGGAAAAGCCAAGCTGAGAAAACGTTCTCTTAGTATTTCGGCTTTGGGAAAAGGTAGTTCCACAGTCCAGGATCCGATTATCTCTGGTGCTCCTTAA
Protein sequence

>MS.gene43869.t1

MELPTNKLLPWHYEMVDSVPIATGRNIHYIYHVSAIGLMPTALYLYCRILAIIWHPPLISVISRRVFELTRSGSSTDAFKSEGIVLSGFDASKGNVKKDCQEASACSRKTDVGNHLLSRKDHGSKSVPFELYKRRTTVFVRRETFLDIVCDVLAEYKYVGPNQRADLMLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVVSTDSIRHMMRGFANEKENPLLWASTYHAGECLDPVAVAEAKAKRRAKKMAGVSQSLPKDEATEGHTSSKFDIHTLEEGCGAPERLNSKQMAVEGFKAQSEMVIDSLDRLITSWEERKESVVVEGVHLSLNFVMGLMKKHPSIIPFMIYITNEDKHMERFAVRAKYMTLDPAKNKYVKYIRNIRTIQDYLCKRADKHLVPKINNTNVDKSVAAIHATVFSCLRRREVGEQLYDPSRNIVTVIDEEYRNQCAANSLSSKGMFQLIQRQGSSRHLMALVNTDGSVAKAWPVNSLDCNGKPVWGNGQENEIGSPMYGPLRIGKAEPVNLQFGFYGISAWPCDGGTSRAGSVDGSKADETDTGSRYVSSCCSSPRMSNGPSKELKEDLSVHGSDEEEIDDQLEAGSDDDFSDDGDKHIHEEVGSVDEESTKSDEEYDDLAMQDVPENGYWSDDDEEFRSKVTIGQEDLGAKMHGIKYRQNLDLFLRTRSEPVPESFCSYSSLLMEKAERRLPPSGKAKLRKRSLSISALGKGSSTVQDPIISGAP