AlfalfaGEDB | MS.gene050214

M. sativa cultivar XinJiangDaYe / MS.gene050214

KEGG: K17479
GO: GO:0003674 GO:0003824 GO:0008150 GO:0009055 GO:0009987 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0019725 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008
PFAM: PF00462.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050214.t1	XP_003591668.1	57.4	338	8	2	1	204	1	336	3.30E-87	331.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050214.t1	Q9LH89	37.6	181	88	5	36	201	200	370	3.7e-23	109.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050214.t1	G7I314	57.4	338	8	2	1	204	1	336	2.4e-87	331.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050214	MS.gene051720	0.814298	1.65E-51	-1.69E-46
MS.gene050214	MS.gene21377	0.840486	8.45E-58	-1.69E-46
MS.gene050214	MS.gene68456	0.929627	5.30E-93	-1.69E-46
MS.gene050214	MS.gene84426	0.813233	2.84E-51	-1.69E-46

Showing 1 to 4 of 4 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050214.t1	MTR_1g090400	94.737	171	7	1	34	204	168	336	1.20e-113	328
MS.gene050214.t1	MTR_7g106500	40.678	236	107	4	1	203	1	236	1.03e-51	168
MS.gene050214.t1	MTR_7g104720	52.419	124	56	2	80	202	248	369	1.48e-37	134
MS.gene050214.t1	MTR_8g099665	42.208	154	81	2	59	204	181	334	6.46e-34	124
MS.gene050214.t1	MTR_1g051180	47.414	116	60	1	87	201	203	318	1.25e-31	118
MS.gene050214.t1	MTR_5g083110	47.009	117	60	2	88	203	90	205	9.15e-31	113
MS.gene050214.t1	MTR_8g106900	51.456	103	49	1	83	184	113	215	1.58e-29	110
MS.gene050214.t1	MTR_3g017490	45.536	112	60	1	91	201	113	224	1.75e-28	108
MS.gene050214.t1	MTR_8g038440	43.103	116	62	1	90	201	103	218	2.10e-26	102
MS.gene050214.t1	MTR_7g090230	42.609	115	64	1	89	201	274	388	5.30e-26	103

Showing 1 to 10 of 16 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050214.t1	AT5G06470	43.415	205	106	4	1	203	1	197	1.51e-51	166
MS.gene050214.t1	AT5G01420	57.895	133	53	2	72	202	235	366	4.41e-46	157
MS.gene050214.t1	AT4G10630	48.120	133	58	2	83	204	166	298	2.33e-38	135
MS.gene050214.t1	AT3G11773	54.128	109	49	1	95	203	9	116	7.51e-37	126
MS.gene050214.t1	AT5G03870	43.210	162	75	3	30	184	178	329	2.06e-36	131
MS.gene050214.t1	AT1G64500	35.500	200	113	4	11	204	140	329	2.00e-30	115
MS.gene050214.t1	AT1G32760	46.018	113	56	2	77	184	144	256	1.17e-26	103
MS.gene050214.t1	AT5G13810	43.860	114	63	1	89	201	123	236	7.19e-26	101
MS.gene050214.t1	AT2G41330	46.789	109	56	1	95	201	256	364	2.03e-24	99.4
MS.gene050214.t1	AT3G57070	42.241	116	64	1	89	201	264	379	3.94e-24	98.6

Showing 1 to 10 of 14 entries

Previous1 2Next

Find 40 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTACTTGCTGCGTTCG+AGG	0.434476	1.2:-67735743	MS.gene050214:CDS
AAAATCTGCATACCCATCAA+TGG	0.498345	1.2:+67736171	None:intergenic
AAACCACCACAAGCATCACA+AGG	0.679920	1.2:+67735286	None:intergenic
AAGTGTCCACCAGGTGGTGA+TGG	0.545637	1.2:-67735601	MS.gene050214:CDS
AAGTTGAAGAAAATTCTTGA+AGG	0.526961	1.2:-67735334	MS.gene050214:CDS
AATGCCAGAACGTATTCTTC+AGG	0.424308	1.2:-67736200	MS.gene050214:CDS
AATGGACCTTGTGATGCTTG+TGG	0.579467	1.2:-67735292	MS.gene050214:CDS
AATTCTTGAAGGGGTTCCAA+TGG	0.506549	1.2:-67735323	MS.gene050214:CDS
ACAGTACCATCACCACCTGG+TGG	0.680584	1.2:+67735595	None:intergenic
AGAAGTTGAAGTTGACCCTT+TGG	0.437150	1.2:-67735638	MS.gene050214:CDS

Showing 1 to 10 of 40 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAGCTAATACTGATAGAAAA+AGG	-	chr1.2:67735686-67735705	MS.gene050214:CDS	30.0%
GTTGAAGAAAATTCTTGAAG+GGG	-	chr1.2:67736194-67736213	MS.gene050214:CDS	30.0%
GTTTCTTCTACAAAGTTTCA+AGG	-	chr1.2:67736017-67736036	MS.gene050214:intron	30.0%
TTCAGGTAAAATCCATTGAT+GGG	-	chr1.2:67735343-67735362	MS.gene050214:CDS	30.0%
AAAATCTGCATACCCATCAA+TGG	+	chr1.2:67735358-67735377	None:intergenic	35.0%
AAACTATCACTCTCAGAAAG+AGG	+	chr1.2:67735718-67735737	None:intergenic	35.0%
AACTATCACTCTCAGAAAGA+GGG	+	chr1.2:67735717-67735736	None:intergenic	35.0%
AAGAAACAGAGTCAAAACAG+AGG	-	chr1.2:67735625-67735644	MS.gene050214:CDS	35.0%
AGAAACAGAGTCAAAACAGA+GGG	-	chr1.2:67735626-67735645	MS.gene050214:CDS	35.0%
AGTTGAGGAAGAGTTTACAA+AGG	-	chr1.2:67735834-67735853	MS.gene050214:intron	35.0%

Showing 1 to 10 of 77 entries

Previous1 2 3 4 5…8Next

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	67735264	67736284	67735264	ID=MS.gene050214
chr1.2	mRNA	67735264	67736284	67735264	ID=MS.gene050214.t1;Parent=MS.gene050214
chr1.2	exon	67736184	67736284	67736184	ID=MS.gene050214.t1.exon1;Parent=MS.gene050214.t1
chr1.2	CDS	67736184	67736284	67736184	ID=cds.MS.gene050214.t1;Parent=MS.gene050214.t1
chr1.2	exon	67735264	67735777	67735264	ID=MS.gene050214.t1.exon2;Parent=MS.gene050214.t1
chr1.2	CDS	67735264	67735777	67735264	ID=cds.MS.gene050214.t1;Parent=MS.gene050214.t1

Gene Sequence

>MS.gene050214

ATGAAGGGAGTGAAAGGAAAATTGTTGAAGAAGCTCAAATCAATCAAACAGGTCAATTATCTAATGCCAGAACGTATTCTTCAGGTAAAATCCATTGATGGGTATGCAGATTTTCTTCCAAAGATTTCATCTTTCAATATACCAAACCCATTTGTTTCTCGAGAAAATGAGTCGAAGAAAAGTTGCGAGAATTTGCAGGAAGAACAACCACAACCAGAAATTATTGATGTATCAGAGCTTATGAAAGATCTTGAAGAAAATGAAGAAGAAATGGATTTGGATGATGATGATGATTACAATGATAATAAAGAGAATATTAGTCACAAAGGTGTTGTTTCGGTTTCGAAAATTGGTAACAGAGAAGAAACAGAGTCAAAACAGAGGGAGGTTTTTCAGAGAAAAAAGACCACCACTGTTACCAAGAGCTAATACTGATAGAAAAAGGAAAAGCCCTCTTTCTGAGAGTGATAGTTTGTCGTTTCGGAGACCGGATTTGAATTCCGGTAGCTTGTTTGATCCAAAACTACTTGCTGCGTTCGAGGAAGCTGTGAAGGAACAGAGGAAAAACAGAGTTGAGGAAGAGTTTACAAAGGTGGATAAAATTGAATTTTTTGATGAAGATGAAGAAGTTGAAGTTGACCCTTTGGCGTTATTTGAAGAGAAGTGTCCACCAGGTGGTGATGGTACTGTGATTTTCTACACAACATCGCTTAGAGGAATCAGAAAGACTTTCGAAGACTGCCAAAAAATTCGGTTTCTTCTACAAAGTTTCAAGGTTTTGTATCTTGAGAGGGATATATCAATGCACAAGGAGTATAAGGATGAACTGTGGAGCCTTTTGGGTGAGAAAGTTGTGCCTCCAAGGCTTTTTGTTAAGGGAAGATATATAGGTGCAACAGAAGAAGTTTTGAGTTTGCATGAACAAGGAAAGTTGAAGAAAATTCTTGAAGGGGTTCCAATGGATTGTTCTAATGGACCTTGTGATGCTTGTGGTGGTTTAAGGTTTGTGATGGTGTTTTAA

Protein sequence

>MS.gene050214.t1

MKGVKGKLLKKLKSIKQVNYLMPERILQVKSIDGLFDPKLLAAFEEAVKEQRKNRVEEEFTKVDKIEFFDEDEEVEVDPLALFEEKCPPGGDGTVIFYTTSLRGIRKTFEDCQKIRFLLQSFKVLYLERDISMHKEYKDELWSLLGEKVVPPRLFVKGRYIGATEEVLSLHEQGKLKKILEGVPMDCSNGPCDACGGLRFVMVF