AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050364

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050364.t1 MTR_5g010390 85.063 395 2 2 1 338 613 1007 0.0 669
MS.gene050364.t1 MTR_7g092770 61.055 398 95 5 1 338 378 775 2.38e-172 498
MS.gene050364.t1 MTR_0305s0020 61.965 397 92 5 1 338 378 774 5.15e-172 497
MS.gene050364.t1 MTR_4g066150 61.013 395 96 5 1 338 377 770 5.36e-171 494
MS.gene050364.t1 MTR_0291s0010 58.000 400 106 4 1 338 398 797 9.37e-161 469
MS.gene050364.t1 MTR_3g027150 58.065 403 104 6 1 338 420 822 2.49e-157 461
MS.gene050364.t1 MTR_7g076900 58.376 394 106 3 2 338 621 1013 1.44e-156 464
MS.gene050364.t1 MTR_4g023460 56.892 399 110 5 1 338 745 1142 6.05e-154 461
MS.gene050364.t1 MTR_8g031270 58.081 396 105 6 1 338 611 1003 5.62e-152 452
MS.gene050364.t1 MTR_4g033215 55.190 395 118 6 1 338 652 1044 1.27e-146 440
MS.gene050364.t1 MTR_4g107850 50.251 398 138 5 1 338 641 1038 2.23e-130 397
MS.gene050364.t1 MTR_6g027540 46.465 396 151 4 1 338 617 1009 8.24e-127 387
MS.gene050364.t1 MTR_6g028050 47.291 406 146 5 1 338 621 1026 3.29e-122 375
MS.gene050364.t1 MTR_4g071870 47.368 361 158 3 10 338 389 749 2.24e-113 346
MS.gene050364.t1 MTR_1g015540 40.399 401 169 5 8 338 373 773 3.22e-95 299
MS.gene050364.t1 MTR_4g057675 41.562 397 162 8 10 338 389 783 3.94e-93 294
MS.gene050364.t1 MTR_5g096980 40.458 393 171 10 7 338 373 763 1.64e-87 279
MS.gene050364.t1 MTR_4g023250 61.290 124 46 1 214 337 7 128 3.48e-49 161
MS.gene050364.t1 MTR_4g023240 70.175 57 17 0 119 175 13 69 1.31e-21 87.4
MS.gene050364.t1 MTR_4g023390 46.875 96 29 2 219 314 24 97 8.43e-21 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050364.t1 AT4G11610 69.114 395 63 4 1 338 619 1011 0.0 566
MS.gene050364.t1 AT4G11610 69.114 395 63 4 1 338 482 874 0.0 566
MS.gene050364.t1 AT4G11610 69.114 395 63 4 1 338 615 1007 0.0 566
MS.gene050364.t1 AT3G57880 62.217 397 91 5 1 338 377 773 1.32e-173 501
MS.gene050364.t1 AT3G57880 62.217 397 91 5 1 338 377 773 1.32e-173 501
MS.gene050364.t1 AT3G57880 62.217 397 91 5 1 338 377 773 1.32e-173 501
MS.gene050364.t1 AT3G57880 62.217 397 91 5 1 338 377 773 1.32e-173 501
MS.gene050364.t1 AT5G12970 60.506 395 97 4 1 338 377 769 1.28e-172 498
MS.gene050364.t1 AT1G51570 60.150 399 98 6 1 338 378 776 1.85e-164 478
MS.gene050364.t1 AT5G06850 57.644 399 108 4 1 338 396 794 2.30e-162 473
MS.gene050364.t1 AT4G00700 57.071 396 112 4 1 338 611 1006 9.89e-160 473
MS.gene050364.t1 AT4G00700 57.071 396 112 4 1 338 611 1006 9.89e-160 473
MS.gene050364.t1 AT5G48060 57.286 398 110 4 1 338 639 1036 1.99e-156 465
MS.gene050364.t1 AT3G61300 56.410 390 112 4 7 338 583 972 1.32e-151 451
MS.gene050364.t1 AT1G04150 56.171 397 114 5 1 338 617 1012 2.40e-151 451
MS.gene050364.t1 AT1G22610 56.962 395 111 6 1 338 637 1029 7.37e-149 445
MS.gene050364.t1 AT3G03680 48.130 401 143 6 1 338 619 1017 1.03e-132 403
MS.gene050364.t1 AT4G20080 50.125 399 138 5 1 338 376 774 2.75e-132 395
MS.gene050364.t1 AT1G74720 47.236 398 150 7 1 338 684 1081 1.74e-121 375
MS.gene050364.t1 AT5G17980 44.888 401 158 6 1 338 649 1049 1.47e-116 361
MS.gene050364.t1 AT5G03435 38.482 382 181 10 1 331 361 739 2.81e-69 230
MS.gene050364.t1 AT3G61720 48.611 216 102 3 5 217 375 584 2.99e-56 196
MS.gene050364.t1 AT3G61720 37.984 129 74 3 216 338 667 795 1.98e-19 89.7
MS.gene050364.t1 AT5G03435 47.739 199 97 4 1 195 361 556 5.68e-49 172
MS.gene050364.t1 AT5G44760 45.455 88 40 2 161 240 364 451 8.05e-17 81.6

Find 76 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAACAAAGACTTGAAAAT+TGG 0.180427 5.2:+6400159 MS.gene050364:CDS
CCCAACTGGTGTTAAGAAAA+TGG 0.211222 5.2:+6400257 MS.gene050364:CDS
CGGAAGCCTGTTTCGAAATC+TGG 0.258205 5.2:-6401234 None:intergenic
GTGTATTGCTCGTTGTATTT+TGG 0.268384 5.2:-6400060 None:intergenic
TTTCTGTTTGTTAGCTGCTT+TGG 0.314831 5.2:+6401148 MS.gene050364:CDS
GTGTGTTTGCAGTTGGAAAA+TGG 0.332879 5.2:+6400565 MS.gene050364:CDS
TGATAGGTGTATGGAACTTC+AGG 0.347349 5.2:+6400706 MS.gene050364:intron
CAGATGTTGACTCACATCTA+TGG 0.373205 5.2:+6400490 MS.gene050364:CDS
GGCATCCCAGATTTCGAAAC+AGG 0.373780 5.2:+6401228 MS.gene050364:CDS
TTGCTTGTTCTTCACCCAAC+TGG 0.374868 5.2:+6400243 MS.gene050364:CDS
ACAAACGGTTGTAGGTGATT+TGG 0.383411 5.2:+6401055 MS.gene050364:CDS
TTCCCAAATCAGTGGTGAAA+AGG 0.392570 5.2:+6400134 MS.gene050364:CDS
CAAATGGTGGCTGGTTTAGC+AGG 0.392665 5.2:+6401191 MS.gene050364:CDS
TAGCAAAATACGGTCACAAA+TGG 0.411100 5.2:+6400004 MS.gene050364:CDS
TGTAGGTGATTTGGCTAGCC+AGG 0.412061 5.2:+6401064 MS.gene050364:CDS
TACCGCATTCTTACAAGGTC+AGG 0.427894 5.2:-6401002 None:intergenic
AATTCCTCATCCATTTCATC+GGG 0.432095 5.2:-6400954 None:intergenic
AACATACTATCAGTTCTTGC+AGG 0.433599 5.2:-6401287 None:intergenic
CGCATATCGACTCTTGAAAC+AGG 0.446486 5.2:+6400195 MS.gene050364:CDS
ACAACAAAGACTTGAAAATT+GGG 0.452516 5.2:+6400160 MS.gene050364:CDS
ACCTATTCTTGATAGGTGTA+TGG 0.457302 5.2:+6400697 MS.gene050364:intron
CCAACTGGTGTTAAGAAAAT+GGG 0.464187 5.2:+6400258 MS.gene050364:CDS
GGATTCATGCACTGTTGAGC+TGG 0.468052 5.2:+6401093 MS.gene050364:CDS
TCCCAAATCAGTGGTGAAAA+GGG 0.479687 5.2:+6400135 MS.gene050364:CDS
ACATATTGTGTAGCAAAATA+CGG 0.491890 5.2:+6399994 MS.gene050364:CDS
TGTAGTACACCCCGATGAAA+TGG 0.494237 5.2:+6400944 MS.gene050364:CDS
GGTAGAATACAAACGGTTGT+AGG 0.496800 5.2:+6401047 MS.gene050364:CDS
GATCGTTTGAGGAGCGTGGC+TGG 0.499227 5.2:+6401026 MS.gene050364:CDS
CTGCCACTATGTTTACTGCT+TGG 0.501177 5.2:-6400413 None:intergenic
AAATTCCTCATCCATTTCAT+CGG 0.503321 5.2:-6400955 None:intergenic
AACATAGTGGCAGCGCGGCT+CGG 0.511333 5.2:+6400423 MS.gene050364:CDS
GGAAGCCTGTTTCGAAATCT+GGG 0.513817 5.2:-6401233 None:intergenic
GAAAGAAGTTTGCCTTGCTA+CGG 0.518974 5.2:-6400521 None:intergenic
AAACCAGCCACCATTTGAAA+AGG 0.520236 5.2:-6401185 None:intergenic
TCCCGAAAATGCATTACGTT+AGG 0.522411 5.2:+6400355 MS.gene050364:CDS
AGCAAAATACGGTCACAAAT+GGG 0.523407 5.2:+6400005 MS.gene050364:CDS
GAATGCGGTATGATCGTTTG+AGG 0.538021 5.2:+6401015 MS.gene050364:CDS
AAGAAGTTGATCGGTGCAGA+CGG 0.553790 5.2:-6401254 None:intergenic
GATCATACCGCATTCTTACA+AGG 0.554571 5.2:-6401007 None:intergenic
GTAGGTGATTTGGCTAGCCA+GGG 0.554831 5.2:+6401065 MS.gene050364:CDS
ATGGAGCATGCGCCGTAGCA+AGG 0.566672 5.2:+6400509 MS.gene050364:CDS
ATTTGGCTAGCCAGGGTGAG+AGG 0.571757 5.2:+6401072 MS.gene050364:CDS
CGTGGCTGGTAGAATACAAA+CGG 0.577843 5.2:+6401040 MS.gene050364:CDS
CCTACTGTGAGGACTGTGGC+AGG 0.580485 5.2:-6400099 None:intergenic
TAGCAGGTTTCTATTTCATG+AGG 0.582086 5.2:+6401207 MS.gene050364:CDS
CAGTTCTTGCAGGAAGTCGA+CGG 0.588288 5.2:-6401277 None:intergenic
ACCACTTCTTTACGAAGCGG+TGG 0.588806 5.2:-6400456 None:intergenic
GACTCCACCCAATGAAAACA+AGG 0.596227 5.2:+6399950 None:intergenic
TCGAGTTGCATGACTGCGAA+TGG 0.597451 5.2:-6400378 None:intergenic
ACCGCTTCGTAAAGAAGTGG+TGG 0.601145 5.2:+6400458 MS.gene050364:CDS
GTGCATGAATCCTCTCACCC+TGG 0.601936 5.2:-6401082 None:intergenic
GAAAATGGGAGAACTTCACT+TGG 0.605162 5.2:+6400272 MS.gene050364:CDS
ACACCCCGATGAAATGGATG+AGG 0.606414 5.2:+6400950 MS.gene050364:CDS
TCCACCACTTCTTTACGAAG+CGG 0.610176 5.2:-6400459 None:intergenic
GTCACAAATGGGTCAGAACA+AGG 0.610662 5.2:+6400016 MS.gene050364:CDS
ATGAAAACAAGGGATGGTAG+AGG 0.612015 5.2:+6399961 MS.gene050364:CDS
CAAAGACTTGAAAATTGGGA+AGG 0.616941 5.2:+6400164 MS.gene050364:CDS
CACCCAATGAAAACAAGGGA+TGG 0.618631 5.2:+6399955 None:intergenic
GTTGGGTGAAGAACAAGCAA+TGG 0.619420 5.2:-6400240 None:intergenic
CCTGCCACAGTCCTCACAGT+AGG 0.628716 5.2:+6400099 MS.gene050364:CDS
TTTGACAATTCCCAAATCAG+TGG 0.630492 5.2:+6400126 MS.gene050364:CDS
ATCCTGACCTTGTAAGAATG+CGG 0.634955 5.2:+6401000 MS.gene050364:CDS
AATACAACGAGCAATACACT+TGG 0.635555 5.2:+6400064 MS.gene050364:CDS
AGTCGACGGAAGAAGTTGAT+CGG 0.641660 5.2:-6401263 None:intergenic
TCACCAAGCAGTAAACATAG+TGG 0.653759 5.2:+6400410 MS.gene050364:CDS
GCCACCGCTTCGTAAAGAAG+TGG 0.658854 5.2:+6400455 MS.gene050364:CDS
GTATGATCGTTTGAGGAGCG+TGG 0.680386 5.2:+6401022 MS.gene050364:CDS
ATACAACGAGCAATACACTT+GGG 0.691267 5.2:+6400065 MS.gene050364:CDS
TATCGACTCTTGAAACAGGA+CGG 0.694274 5.2:+6400199 MS.gene050364:CDS
CAACGAGCAATACACTTGGG+AGG 0.698127 5.2:+6400068 MS.gene050364:CDS
ACTCCACCCAATGAAAACAA+GGG 0.702014 5.2:+6399951 None:intergenic
GACACCTACTGTGAGGACTG+TGG 0.709482 5.2:-6400103 None:intergenic
ATGAATAAAGAAGTAGCACG+CGG 0.714106 5.2:-6401122 None:intergenic
CAGTAAACATAGTGGCAGCG+CGG 0.720769 5.2:+6400418 MS.gene050364:CDS
TGTCAAAGACACCTACTGTG+AGG 0.734255 5.2:-6400110 None:intergenic
ATTCCTCATCCATTTCATCG+GGG 0.747292 5.2:-6400953 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGCAATCATGTATAAAT+AGG - chr5.2:6400794-6400813 None:intergenic 20.0%
!! TATGCAATCATGTATAAATA+GGG - chr5.2:6400793-6400812 None:intergenic 20.0%
! ACAACAAAGACTTGAAAATT+GGG + chr5.2:6400160-6400179 MS.gene050364:CDS 25.0%
! ACATATTGTGTAGCAAAATA+CGG + chr5.2:6399994-6400013 MS.gene050364:CDS 25.0%
! CCTGATATTGAAAATAAAGT+TGG - chr5.2:6400874-6400893 None:intergenic 25.0%
!! ATATGTTACTCCTTTTCAAA+TGG + chr5.2:6401175-6401194 MS.gene050364:CDS 25.0%
!!! CCAACTTTATTTTCAATATC+AGG + chr5.2:6400871-6400890 MS.gene050364:intron 25.0%
AAATTCCTCATCCATTTCAT+CGG - chr5.2:6400958-6400977 None:intergenic 30.0%
CACAACAAAGACTTGAAAAT+TGG + chr5.2:6400159-6400178 MS.gene050364:CDS 30.0%
TTTCTCTACCTATTCTTGAT+AGG + chr5.2:6400690-6400709 MS.gene050364:intron 30.0%
! AATAGGTAGAGAAAAAGTGT+AGG - chr5.2:6400684-6400703 None:intergenic 30.0%
AACATACTATCAGTTCTTGC+AGG - chr5.2:6401290-6401309 None:intergenic 35.0%
AATACAACGAGCAATACACT+TGG + chr5.2:6400064-6400083 MS.gene050364:CDS 35.0%
AATTCCTCATCCATTTCATC+GGG - chr5.2:6400957-6400976 None:intergenic 35.0%
ACCTATTCTTGATAGGTGTA+TGG + chr5.2:6400697-6400716 MS.gene050364:intron 35.0%
AGCAAAATACGGTCACAAAT+GGG + chr5.2:6400005-6400024 MS.gene050364:CDS 35.0%
ATACAACGAGCAATACACTT+GGG + chr5.2:6400065-6400084 MS.gene050364:CDS 35.0%
ATGAATAAAGAAGTAGCACG+CGG - chr5.2:6401125-6401144 None:intergenic 35.0%
CAAAGACTTGAAAATTGGGA+AGG + chr5.2:6400164-6400183 MS.gene050364:CDS 35.0%
TAGCAAAATACGGTCACAAA+TGG + chr5.2:6400004-6400023 MS.gene050364:CDS 35.0%
TAGCAGGTTTCTATTTCATG+AGG + chr5.2:6401207-6401226 MS.gene050364:CDS 35.0%
TCCATACACCTATCAAGAAT+AGG - chr5.2:6400701-6400720 None:intergenic 35.0%
TGAACAAGGACTGTTGTAAT+AGG - chr5.2:6400618-6400637 None:intergenic 35.0%
TGAGAAACAACACATGAACA+AGG - chr5.2:6400632-6400651 None:intergenic 35.0%
TTTGACAATTCCCAAATCAG+TGG + chr5.2:6400126-6400145 MS.gene050364:CDS 35.0%
TTTGCAGTTGGAAAATGGTT+AGG + chr5.2:6400570-6400589 MS.gene050364:intron 35.0%
! CCAACTGGTGTTAAGAAAAT+GGG + chr5.2:6400258-6400277 MS.gene050364:CDS 35.0%
! CCATTTTCTTAACACCAGTT+GGG - chr5.2:6400260-6400279 None:intergenic 35.0%
! GTGTATTGCTCGTTGTATTT+TGG - chr5.2:6400063-6400082 None:intergenic 35.0%
! TGTTACTCCTTTTCAAATGG+TGG + chr5.2:6401178-6401197 MS.gene050364:CDS 35.0%
! TTTCTGTTTGTTAGCTGCTT+TGG + chr5.2:6401148-6401167 MS.gene050364:CDS 35.0%
!! TCATGTGTTGTTTCTCATGT+TGG + chr5.2:6400635-6400654 MS.gene050364:intron 35.0%
AAACCAGCCACCATTTGAAA+AGG - chr5.2:6401188-6401207 None:intergenic 40.0%
ACAAACGGTTGTAGGTGATT+TGG + chr5.2:6401055-6401074 MS.gene050364:CDS 40.0%
AGTGTAGGCAAAATCAACTC+CGG - chr5.2:6400669-6400688 None:intergenic 40.0%
ATCCTGACCTTGTAAGAATG+CGG + chr5.2:6401000-6401019 MS.gene050364:CDS 40.0%
ATGAAAACAAGGGATGGTAG+AGG + chr5.2:6399961-6399980 MS.gene050364:CDS 40.0%
ATTCCTCATCCATTTCATCG+GGG - chr5.2:6400956-6400975 None:intergenic 40.0%
ATTCTTGTGTTCATGTGTGG+AGG - chr5.2:6400912-6400931 None:intergenic 40.0%
CACCAGAAAAAACTGTCATG+AGG - chr5.2:6400548-6400567 None:intergenic 40.0%
CATGAACACAAGAATCTCAC+AGG + chr5.2:6400917-6400936 MS.gene050364:intron 40.0%
GAAAATGGGAGAACTTCACT+TGG + chr5.2:6400272-6400291 MS.gene050364:CDS 40.0%
GAAAGAAGTTTGCCTTGCTA+CGG - chr5.2:6400524-6400543 None:intergenic 40.0%
GAGATTCTTGTGTTCATGTG+TGG - chr5.2:6400915-6400934 None:intergenic 40.0%
GATCATACCGCATTCTTACA+AGG - chr5.2:6401010-6401029 None:intergenic 40.0%
GGTAGAATACAAACGGTTGT+AGG + chr5.2:6401047-6401066 MS.gene050364:CDS 40.0%
GGTTAGGTGATATTTGCATG+TGG + chr5.2:6400586-6400605 MS.gene050364:intron 40.0%
GTGTGTTTGCAGTTGGAAAA+TGG + chr5.2:6400565-6400584 MS.gene050364:CDS 40.0%
TCACCAAGCAGTAAACATAG+TGG + chr5.2:6400410-6400429 MS.gene050364:CDS 40.0%
TCCCAAATCAGTGGTGAAAA+GGG + chr5.2:6400135-6400154 MS.gene050364:CDS 40.0%
TCCCGAAAATGCATTACGTT+AGG + chr5.2:6400355-6400374 MS.gene050364:CDS 40.0%
TGATAGGTGTATGGAACTTC+AGG + chr5.2:6400706-6400725 MS.gene050364:intron 40.0%
TTCCCAAATCAGTGGTGAAA+AGG + chr5.2:6400134-6400153 MS.gene050364:CDS 40.0%
TTCTTGTGTTCATGTGTGGA+GGG - chr5.2:6400911-6400930 None:intergenic 40.0%
! AGGTCAGGATTTTTGCTTGT+TGG - chr5.2:6400990-6401009 None:intergenic 40.0%
! CCCAACTGGTGTTAAGAAAA+TGG + chr5.2:6400257-6400276 MS.gene050364:CDS 40.0%
! CCCATTTTCTTAACACCAGT+TGG - chr5.2:6400261-6400280 None:intergenic 40.0%
! GCCTAACGTAATGCATTTTC+GGG - chr5.2:6400359-6400378 None:intergenic 40.0%
! GGCCTAACGTAATGCATTTT+CGG - chr5.2:6400360-6400379 None:intergenic 40.0%
!! CAGATGTTGACTCACATCTA+TGG + chr5.2:6400490-6400509 MS.gene050364:CDS 40.0%
!! TAATGCATTTTCGGGAGAAG+TGG - chr5.2:6400351-6400370 None:intergenic 40.0%
!! TATCGACTCTTGAAACAGGA+CGG + chr5.2:6400199-6400218 MS.gene050364:CDS 40.0%
!! TTTTCTGGTGTGTTTGCAGT+TGG + chr5.2:6400558-6400577 MS.gene050364:CDS 40.0%
!!! ACCCTTTTCACCACTGATTT+GGG - chr5.2:6400139-6400158 None:intergenic 40.0%
!!! GGAGAAGTGGTTTTGAGTAT+AGG - chr5.2:6400338-6400357 None:intergenic 40.0%
CGTGGCTGGTAGAATACAAA+CGG + chr5.2:6401040-6401059 MS.gene050364:CDS 45.0%
CTGCCACTATGTTTACTGCT+TGG - chr5.2:6400416-6400435 None:intergenic 45.0%
GAATGCGGTATGATCGTTTG+AGG + chr5.2:6401015-6401034 MS.gene050364:CDS 45.0%
GGAAGCCTGTTTCGAAATCT+GGG - chr5.2:6401236-6401255 None:intergenic 45.0%
GTCACAAATGGGTCAGAACA+AGG + chr5.2:6400016-6400035 MS.gene050364:CDS 45.0%
GTGTAGGCAAAATCAACTCC+GGG - chr5.2:6400668-6400687 None:intergenic 45.0%
GTTGGGTGAAGAACAAGCAA+TGG - chr5.2:6400243-6400262 None:intergenic 45.0%
TACCGCATTCTTACAAGGTC+AGG - chr5.2:6401005-6401024 None:intergenic 45.0%
TCCACCACTTCTTTACGAAG+CGG - chr5.2:6400462-6400481 None:intergenic 45.0%
TGTAGTACACCCCGATGAAA+TGG + chr5.2:6400944-6400963 MS.gene050364:CDS 45.0%
TGTCAAAGACACCTACTGTG+AGG - chr5.2:6400113-6400132 None:intergenic 45.0%
TTGCTTGTTCTTCACCCAAC+TGG + chr5.2:6400243-6400262 MS.gene050364:CDS 45.0%
! AAGAAGTTGATCGGTGCAGA+CGG - chr5.2:6401257-6401276 None:intergenic 45.0%
! ACTCCTTTTCAAATGGTGGC+TGG + chr5.2:6401182-6401201 MS.gene050364:CDS 45.0%
! AGTCGACGGAAGAAGTTGAT+CGG - chr5.2:6401266-6401285 None:intergenic 45.0%
!! CGCATATCGACTCTTGAAAC+AGG + chr5.2:6400195-6400214 MS.gene050364:CDS 45.0%
!! GACCCTTTTCACCACTGATT+TGG - chr5.2:6400140-6400159 None:intergenic 45.0%
!! TCTCATGTTGGTTTGCTTCC+CGG + chr5.2:6400647-6400666 MS.gene050364:intron 45.0%
!! TTCATGTGTGGAGGGTATCT+TGG - chr5.2:6400903-6400922 None:intergenic 45.0%
!!! CGCCTCATGACAGTTTTTTC+TGG + chr5.2:6400543-6400562 MS.gene050364:CDS 45.0%
ACACCCCGATGAAATGGATG+AGG + chr5.2:6400950-6400969 MS.gene050364:CDS 50.0%
ACCACTTCTTTACGAAGCGG+TGG - chr5.2:6400459-6400478 None:intergenic 50.0%
ACCGCTTCGTAAAGAAGTGG+TGG + chr5.2:6400458-6400477 MS.gene050364:CDS 50.0%
CAACGAGCAATACACTTGGG+AGG + chr5.2:6400068-6400087 MS.gene050364:CDS 50.0%
CAGTAAACATAGTGGCAGCG+CGG + chr5.2:6400418-6400437 MS.gene050364:CDS 50.0%
CAGTTCTTGCAGGAAGTCGA+CGG - chr5.2:6401280-6401299 None:intergenic 50.0%
CGGAAGCCTGTTTCGAAATC+TGG - chr5.2:6401237-6401256 None:intergenic 50.0%
GGATTCATGCACTGTTGAGC+TGG + chr5.2:6401093-6401112 MS.gene050364:CDS 50.0%
GGCATCCCAGATTTCGAAAC+AGG + chr5.2:6401228-6401247 MS.gene050364:CDS 50.0%
GTATGATCGTTTGAGGAGCG+TGG + chr5.2:6401022-6401041 MS.gene050364:CDS 50.0%
! GTAGGTGATTTGGCTAGCCA+GGG + chr5.2:6401065-6401084 MS.gene050364:CDS 50.0%
! TCGAGTTGCATGACTGCGAA+TGG - chr5.2:6400381-6400400 None:intergenic 50.0%
! TGTAGGTGATTTGGCTAGCC+AGG + chr5.2:6401064-6401083 MS.gene050364:CDS 50.0%
!! CAAATGGTGGCTGGTTTAGC+AGG + chr5.2:6401191-6401210 MS.gene050364:CDS 50.0%
!! TGTGTGGAGGGTATCTTGGT+CGG - chr5.2:6400899-6400918 None:intergenic 50.0%
GACACCTACTGTGAGGACTG+TGG - chr5.2:6400106-6400125 None:intergenic 55.0%
GCCACCGCTTCGTAAAGAAG+TGG + chr5.2:6400455-6400474 MS.gene050364:CDS 55.0%
GTGCATGAATCCTCTCACCC+TGG - chr5.2:6401085-6401104 None:intergenic 55.0%
! ATTTGGCTAGCCAGGGTGAG+AGG + chr5.2:6401072-6401091 MS.gene050364:CDS 55.0%
AACATAGTGGCAGCGCGGCT+CGG + chr5.2:6400423-6400442 MS.gene050364:CDS 60.0%
ATGGAGCATGCGCCGTAGCA+AGG + chr5.2:6400509-6400528 MS.gene050364:CDS 60.0%
CCTACTGTGAGGACTGTGGC+AGG - chr5.2:6400102-6400121 None:intergenic 60.0%
CCTGCCACAGTCCTCACAGT+AGG + chr5.2:6400099-6400118 MS.gene050364:CDS 60.0%
! GATCGTTTGAGGAGCGTGGC+TGG + chr5.2:6401026-6401045 MS.gene050364:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 6399961 6401313 6399961 ID=MS.gene050364
chr5.2 mRNA 6399961 6401313 6399961 ID=MS.gene050364.t1;Parent=MS.gene050364
chr5.2 exon 6399961 6400586 6399961 ID=MS.gene050364.t1.exon1;Parent=MS.gene050364.t1
chr5.2 CDS 6399961 6400586 6399961 ID=cds.MS.gene050364.t1;Parent=MS.gene050364.t1
chr5.2 exon 6400712 6400727 6400712 ID=MS.gene050364.t1.exon2;Parent=MS.gene050364.t1
chr5.2 CDS 6400712 6400727 6400712 ID=cds.MS.gene050364.t1;Parent=MS.gene050364.t1
chr5.2 exon 6400939 6401313 6400939 ID=MS.gene050364.t1.exon3;Parent=MS.gene050364.t1
chr5.2 CDS 6400939 6401313 6400939 ID=cds.MS.gene050364.t1;Parent=MS.gene050364.t1
Gene Sequence

>MS.gene050364

ATGAAAACAAGGGATGGTAGAGGCACTTCTGATACATATTGTGTAGCAAAATACGGTCACAAATGGGTCAGAACAAGGACACTTGTTGACAACTTGTCGCCAAAATACAACGAGCAATACACTTGGGAGGTCTTTGATCCTGCCACAGTCCTCACAGTAGGTGTCTTTGACAATTCCCAAATCAGTGGTGAAAAGGGTCACAACAAAGACTTGAAAATTGGGAAGGTGAGAATTCGCATATCGACTCTTGAAACAGGACGGATCTACACACACTCATATCCATTGCTTGTTCTTCACCCAACTGGTGTTAAGAAAATGGGAGAACTTCACTTGGCAATAAGATTCTCATGCACTTCTTTTGCAAACATGCTTTACCTATACTCAAAACCACTTCTCCCGAAAATGCATTACGTTAGGCCATTCGCAGTCATGCAACTCGATATGCTACGTCACCAAGCAGTAAACATAGTGGCAGCGCGGCTCGGTCGAGCAGAGCCACCGCTTCGTAAAGAAGTGGTGGAATACATGTCAGATGTTGACTCACATCTATGGAGCATGCGCCGTAGCAAGGCAAACTTCTTTCGCCTCATGACAGTTTTTTCTGGTGTGTTTGCAGTTGGAAAATGGTTAGGTGATATTTGCATGTGGTTAAATCCTATTACAACAGTCCTTGTTCATGTGTTGTTTCTCATGTTGGTTTGCTTCCCGGAGTTGATTTTGCCTACACTTTTTCTCTACCTATTCTTGATAGGTGTATGGAACTTCAGGTATTTCTAAACTATCTCATTTATTGATAACTTGATCAATTCATAATAATAAATAAAAGACACCCTATTTATACATGATTGCATATGAAAATGAAAAAGATCATAAAGATAAACAACTTAACTAACTCTAAACTAACTAATAACCAACTTTATTTTCAATATCAGGTACCGACCAAGATACCCTCCACACATGAACACAAGAATCTCACAGGCTGATGTAGTACACCCCGATGAAATGGATGAGGAATTTGATACTTTTCCAACAAGCAAAAATCCTGACCTTGTAAGAATGCGGTATGATCGTTTGAGGAGCGTGGCTGGTAGAATACAAACGGTTGTAGGTGATTTGGCTAGCCAGGGTGAGAGGATTCATGCACTGTTGAGCTGGAGAGATCCGCGTGCTACTTCTTTATTCATTACTTTCTGTTTGTTAGCTGCTTTGGTGTTATATGTTACTCCTTTTCAAATGGTGGCTGGTTTAGCAGGTTTCTATTTCATGAGGCATCCCAGATTTCGAAACAGGCTTCCGTCTGCACCGATCAACTTCTTCCGTCGACTTCCTGCAAGAACTGATAGTATGTTGTAG
Protein sequence

>MS.gene050364.t1

MKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQISGEKGHNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSKPLLPKMHYVRPFAVMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGVFAVGKWCMELQADVVHPDEMDEEFDTFPTSKNPDLVRMRYDRLRSVAGRIQTVVGDLASQGERIHALLSWRDPRATSLFITFCLLAALVLYVTPFQMVAGLAGFYFMRHPRFRNRLPSAPINFFRRLPARTDSML