Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050461.t1 | XP_003626448.1 | 94 | 333 | 20 | 0 | 1 | 333 | 1 | 333 | 5.40E-164 | 587 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050461.t1 | G7L1W8 | 94.0 | 333 | 20 | 0 | 1 | 333 | 1 | 333 | 3.9e-164 | 587.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050461 | MS.gene050526 | 0.97058 | 7.81E-132 | -1.69E-46 |
| MS.gene050461 | MS.gene24099 | 0.81493 | 1.20E-51 | -1.69E-46 |
| MS.gene050461 | MS.gene88977 | 0.805865 | 1.09E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050461.t1 | MTR_7g115070 | 93.994 | 333 | 20 | 0 | 1 | 333 | 1 | 333 | 0.0 | 615 |
| MS.gene050461.t1 | MTR_4g075610 | 25.220 | 341 | 234 | 8 | 4 | 328 | 13 | 348 | 9.94e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050461.t1 | AT5G28830 | 47.516 | 322 | 159 | 4 | 9 | 329 | 7 | 319 | 1.58e-93 | 281 |
Find 81 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACAAGAGCATTTCGAATT+TGG | 0.159707 | 7.3:+2332295 | None:intergenic |
| CATTTATGATTTGGATATTC+TGG | 0.221327 | 7.3:+2330900 | None:intergenic |
| CTTTCTAGAGAAGGCATTAC+AGG | 0.264117 | 7.3:-2330457 | MS.gene050461:CDS |
| CAGAATATCCAAATCATAAA+TGG | 0.264816 | 7.3:-2330899 | MS.gene050461:CDS |
| TCTTAGAGCCATTTATGATT+TGG | 0.286612 | 7.3:+2330891 | None:intergenic |
| TTCTACTCCATCTTTCTCTT+TGG | 0.290325 | 7.3:+2330290 | None:intergenic |
| GAAGGATATCTTGGAGAAAA+TGG | 0.301415 | 7.3:-2330238 | MS.gene050461:CDS |
| TAGGAAGCACTGAAATAATA+AGG | 0.338202 | 7.3:-2330410 | MS.gene050461:CDS |
| TACTCTTCGTTTGTTATTTG+AGG | 0.345060 | 7.3:-2332397 | MS.gene050461:CDS |
| TCCACTTGTAATATCAATCT+TGG | 0.380514 | 7.3:-2332427 | MS.gene050461:CDS |
| CAAGCAAACTCCTGATATAC+TGG | 0.381464 | 7.3:+2330195 | None:intergenic |
| AAAACTTCTGAAGGATATCT+TGG | 0.389422 | 7.3:-2330247 | MS.gene050461:CDS |
| TGAGTTGAGTCCAGTATATC+AGG | 0.397348 | 7.3:-2330205 | MS.gene050461:CDS |
| CACCTCAAGATCTTGTATTA+CGG | 0.410889 | 7.3:+2330952 | None:intergenic |
| ATGGGAGTTCCTCCTTTCTC+AGG | 0.411076 | 7.3:-2332258 | MS.gene050461:intron |
| TCCTAGACCATCCTTTGCAT+TGG | 0.420903 | 7.3:+2330428 | None:intergenic |
| CGGAGTTACTGCGGCGGAGG+CGG | 0.438740 | 7.3:+2333344 | None:intergenic |
| ATCTTTCTCTTTGGCTACAT+CGG | 0.456374 | 7.3:+2330299 | None:intergenic |
| AGAATTAGAGAAAGAAGAGC+TGG | 0.471247 | 7.3:-2330271 | MS.gene050461:CDS |
| TCGAAATGCTCTTGTTCAGA+TGG | 0.472040 | 7.3:-2332289 | MS.gene050461:CDS |
| TGACTTGGATGTTGAAGATA+AGG | 0.475203 | 7.3:-2332334 | MS.gene050461:CDS |
| AGAACCTGTCTTATCCCTTC+AGG | 0.478321 | 7.3:-2333317 | MS.gene050461:CDS |
| AGCTGATGGAGAAGAAGAGC+TGG | 0.479736 | 7.3:-2331005 | MS.gene050461:CDS |
| GCATCGCCAGCTTCAGATAG+TGG | 0.480817 | 7.3:+2330351 | None:intergenic |
| AGAATTTCAGAGGCCTTAGC+AGG | 0.483233 | 7.3:+2333283 | None:intergenic |
| GACTTGGATGTTGAAGATAA+GGG | 0.487262 | 7.3:-2332333 | MS.gene050461:CDS |
| TTTCAATTGCAGATACTTGA+CGG | 0.487273 | 7.3:-2333514 | MS.gene050461:CDS |
| TTCCACCCTCTTCGATCGTC+CGG | 0.488273 | 7.3:-2333464 | MS.gene050461:CDS |
| CTCTTCGATCGTCCGGTCAC+CGG | 0.490012 | 7.3:-2333457 | MS.gene050461:CDS |
| GCAGCTATTGGCTAATGAAA+AGG | 0.494904 | 7.3:-2330490 | MS.gene050461:intron |
| TGTTCAGATGGGTGTCGACA+TGG | 0.502109 | 7.3:-2332277 | MS.gene050461:CDS |
| TATATCAGGAGTTTGCTTGA+GGG | 0.503086 | 7.3:-2330191 | None:intergenic |
| AGTAATTGAGCTCCGGTGAC+CGG | 0.504241 | 7.3:+2333445 | None:intergenic |
| TCCAAGATTGATATTACAAG+TGG | 0.504798 | 7.3:+2332426 | None:intergenic |
| CATCGGAGTTACTGCGGCGG+AGG | 0.505314 | 7.3:+2333341 | None:intergenic |
| ACTCCTTAGCGTTTCTCTCA+AGG | 0.505546 | 7.3:+2330382 | None:intergenic |
| GTTAAACAGCTTTCTAGAGA+AGG | 0.518932 | 7.3:-2330466 | MS.gene050461:CDS |
| GGCTGAATACGAACCTGCTA+AGG | 0.519061 | 7.3:-2333296 | MS.gene050461:CDS |
| TCGTTTGTTATTTGAGGACG+AGG | 0.522527 | 7.3:-2332391 | MS.gene050461:CDS |
| GAAGCTGTGCAAATTGTGCC+TGG | 0.525415 | 7.3:+2330981 | None:intergenic |
| ACCTTTGAGTTCATCTGCGA+TGG | 0.525871 | 7.3:+2333243 | None:intergenic |
| AGTTTACCACTATCTGAAGC+TGG | 0.534057 | 7.3:-2330357 | MS.gene050461:CDS |
| AGAGCTGGTAAAACTTCTGA+AGG | 0.538021 | 7.3:-2330256 | MS.gene050461:CDS |
| CGAAATGCTCTTGTTCAGAT+GGG | 0.541994 | 7.3:-2332288 | MS.gene050461:CDS |
| GCCAATGCAAAGGATGGTCT+AGG | 0.545006 | 7.3:-2330429 | MS.gene050461:CDS |
| GTATATCAGGAGTTTGCTTG+AGG | 0.550825 | 7.3:-2330192 | None:intergenic |
| TTGAGAAAACATGGAGCTGA+TGG | 0.553099 | 7.3:-2331019 | MS.gene050461:CDS |
| TGGAGAAGAAGAGCTGGGCC+AGG | 0.553777 | 7.3:-2330999 | MS.gene050461:CDS |
| CTTGTAATATCAATCTTGGA+TGG | 0.554232 | 7.3:-2332423 | MS.gene050461:CDS |
| AAATAAAGTGAACCTGAGAA+AGG | 0.559843 | 7.3:+2332246 | None:intergenic |
| CTCAACAAGTCATTTAGCTG+AGG | 0.562667 | 7.3:+2331037 | None:intergenic |
| AGAAAATCTATTCACTGACT+TGG | 0.564086 | 7.3:-2332349 | MS.gene050461:CDS |
| CAGGTTCGTATTCAGCCTGA+AGG | 0.564340 | 7.3:+2333302 | None:intergenic |
| GTAGAGTTTAAGAATTTCAG+AGG | 0.572116 | 7.3:+2333273 | None:intergenic |
| AAATGGCTCTAAGATAAGAC+AGG | 0.572442 | 7.3:-2330882 | MS.gene050461:intron |
| GTTCAGATGGGTGTCGACAT+GGG | 0.576186 | 7.3:-2332276 | MS.gene050461:CDS |
| GATGTAGCCAAAGAGAAAGA+TGG | 0.579873 | 7.3:-2330297 | MS.gene050461:CDS |
| TTTGAGTTCATCTGCGATGG+CGG | 0.586740 | 7.3:+2333246 | None:intergenic |
| GCGGAGGCGGTTGAGAGCAG+AGG | 0.594200 | 7.3:+2333357 | None:intergenic |
| TCAGCCTGAAGGGATAAGAC+AGG | 0.597889 | 7.3:+2333313 | None:intergenic |
| AATGACTTGTTGAGAAAACA+TGG | 0.598679 | 7.3:-2331028 | MS.gene050461:CDS |
| AGGTTCGTATTCAGCCTGAA+GGG | 0.599765 | 7.3:+2333303 | None:intergenic |
| GTCCGTAATACAAGATCTTG+AGG | 0.601507 | 7.3:-2330954 | MS.gene050461:CDS |
| ACTTGGATGTTGAAGATAAG+GGG | 0.605076 | 7.3:-2332332 | MS.gene050461:CDS |
| AATGTCGAGTAATTGAGCTC+CGG | 0.610555 | 7.3:+2333438 | None:intergenic |
| GGTGACCGGACGATCGAAGA+GGG | 0.613645 | 7.3:+2333459 | None:intergenic |
| AACCAAAGCAAAATGTCAGA+CGG | 0.617067 | 7.3:-2333544 | None:intergenic |
| GCTGATGGAGAAGAAGAGCT+GGG | 0.619298 | 7.3:-2331004 | MS.gene050461:CDS |
| CTTCCTTGAGAGAAACGCTA+AGG | 0.622043 | 7.3:-2330385 | MS.gene050461:CDS |
| GGATAAGACAGGTTCTGCAT+CGG | 0.626283 | 7.3:+2333324 | None:intergenic |
| TAAAGTGAACCTGAGAAAGG+AGG | 0.656771 | 7.3:+2332249 | None:intergenic |
| GACCGGACGATCGAAGAGGG+TGG | 0.662131 | 7.3:+2333462 | None:intergenic |
| CGGTGACCGGACGATCGAAG+AGG | 0.665064 | 7.3:+2333458 | None:intergenic |
| GCCATCGCAGATGAACTCAA+AGG | 0.672728 | 7.3:-2333244 | MS.gene050461:intron |
| CGTAATACAAGATCTTGAGG+TGG | 0.679321 | 7.3:-2330951 | MS.gene050461:CDS |
| GTTCTGCATCGGAGTTACTG+CGG | 0.681458 | 7.3:+2333335 | None:intergenic |
| AAGATAGATCGAGGTCTCTG+AGG | 0.689095 | 7.3:+2333485 | None:intergenic |
| CAAAGCAAAATGTCAGACGG+AGG | 0.696398 | 7.3:-2333541 | None:intergenic |
| AGAGGGTGGAAGATAGATCG+AGG | 0.703898 | 7.3:+2333476 | None:intergenic |
| CTGCATCGGAGTTACTGCGG+CGG | 0.709736 | 7.3:+2333338 | None:intergenic |
| AGAATCATAGAAAAGAGCAG+CGG | 0.721201 | 7.3:+2330329 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTTAATCTTTAATCTAA+TGG | - | chr7.3:2331746-2331765 | MS.gene050461:intron | 15.0% |
| !! | ATAGATATAAAAAACAATAC+AGG | + | chr7.3:2332908-2332927 | None:intergenic | 15.0% |
| !! | ATGAAAAATAGCTTATAAAA+GGG | + | chr7.3:2332019-2332038 | None:intergenic | 15.0% |
| !! | ATTTATAATAATGCATAATG+AGG | + | chr7.3:2330535-2330554 | None:intergenic | 15.0% |
| !! | TATGAAAAATAGCTTATAAA+AGG | + | chr7.3:2332020-2332039 | None:intergenic | 15.0% |
| !! | TCAATAATAATGATATGAAT+AGG | + | chr7.3:2331621-2331640 | None:intergenic | 15.0% |
| !!! | ACTGAAACATAATATTTTTT+AGG | + | chr7.3:2332885-2332904 | None:intergenic | 15.0% |
| !!! | ATAATTATTTCTTCATGTTT+TGG | - | chr7.3:2331222-2331241 | MS.gene050461:intron | 15.0% |
| !!! | TTAATATTTTAGTTTCCTAA+AGG | + | chr7.3:2332145-2332164 | None:intergenic | 15.0% |
| !! | AAAAAATAAGTCAATCCAAA+CGG | - | chr7.3:2332044-2332063 | MS.gene050461:intron | 20.0% |
| !! | AAATTTCTATAATTGAGATC+TGG | - | chr7.3:2332320-2332339 | MS.gene050461:CDS | 20.0% |
| !! | AATTCTATGAACAAAACAAA+AGG | + | chr7.3:2332072-2332091 | None:intergenic | 20.0% |
| !! | ACAGAATTTCATATACTTTA+GGG | - | chr7.3:2331087-2331106 | MS.gene050461:intron | 20.0% |
| !! | ATAAGTCAGTAAATAAAAGT+TGG | + | chr7.3:2333201-2333220 | None:intergenic | 20.0% |
| !! | GAATATAATACTGCTTATAT+TGG | - | chr7.3:2331254-2331273 | MS.gene050461:intron | 20.0% |
| !! | TCTCAATTATAGAAATTTCA+AGG | + | chr7.3:2332318-2332337 | None:intergenic | 20.0% |
| !! | TCTGCTTATTTATGTTAAAA+AGG | + | chr7.3:2332665-2332684 | None:intergenic | 20.0% |
| !! | TTTCAAACAATGGAAAATAT+AGG | + | chr7.3:2332552-2332571 | None:intergenic | 20.0% |
| !!! | ACATAATTTATTTTGCTTTC+AGG | + | chr7.3:2332170-2332189 | None:intergenic | 20.0% |
| !!! | TTATTCTCTTCTTTTGTATA+TGG | - | chr7.3:2330764-2330783 | MS.gene050461:intron | 20.0% |
| !!! | TTGGTGTTCTATTTAAAATT+TGG | + | chr7.3:2332271-2332290 | None:intergenic | 20.0% |
| !!! | TTTAATTTTTCTTCGCTAAT+TGG | - | chr7.3:2330620-2330639 | MS.gene050461:intron | 20.0% |
| !!! | TTTTTTTTTTTTTGTCGTTC+TGG | - | chr7.3:2331520-2331539 | MS.gene050461:intron | 20.0% |
| ! | AAAAATAAGTCAATCCAAAC+GGG | - | chr7.3:2332045-2332064 | MS.gene050461:intron | 25.0% |
| ! | ACAAGTTTATATCTGTACAA+AGG | - | chr7.3:2332517-2332536 | MS.gene050461:intron | 25.0% |
| ! | ACTTGTGAAAATAAGCTAAA+AGG | - | chr7.3:2330930-2330949 | MS.gene050461:CDS | 25.0% |
| ! | ATAAGACATAACACATATGA+CGG | + | chr7.3:2332449-2332468 | None:intergenic | 25.0% |
| ! | ATTGTGTGGATAATTTGAAT+TGG | - | chr7.3:2330687-2330706 | MS.gene050461:intron | 25.0% |
| ! | CAGAATATCCAAATCATAAA+TGG | - | chr7.3:2332827-2332846 | MS.gene050461:intron | 25.0% |
| ! | CATATTAATCAAGATGAAAC+AGG | + | chr7.3:2331695-2331714 | None:intergenic | 25.0% |
| ! | GACAGAATTTCATATACTTT+AGG | - | chr7.3:2331086-2331105 | MS.gene050461:intron | 25.0% |
| ! | TAAATAGAACACCAAAAAGT+TGG | - | chr7.3:2332276-2332295 | MS.gene050461:CDS | 25.0% |
| ! | TAGTTTAGAGACTAAATAGA+TGG | - | chr7.3:2331191-2331210 | MS.gene050461:intron | 25.0% |
| ! | TAGTTTATGAAAACAGCTTA+CGG | + | chr7.3:2330901-2330920 | None:intergenic | 25.0% |
| !! | AAAAACGTGTTGATCAAATT+TGG | - | chr7.3:2330656-2330675 | MS.gene050461:intron | 25.0% |
| !! | AAATTTGATCAACACGTTTT+TGG | + | chr7.3:2330657-2330676 | None:intergenic | 25.0% |
| !! | CATTTATGATTTGGATATTC+TGG | + | chr7.3:2332829-2332848 | None:intergenic | 25.0% |
| !! | GACGAAAACAAAATTCTTTT+TGG | + | chr7.3:2332807-2332826 | None:intergenic | 25.0% |
| !! | TACTTTAGGGAATAAATTGA+TGG | - | chr7.3:2331100-2331119 | MS.gene050461:intron | 25.0% |
| !! | TTTTTCTTATCATGAACAAC+TGG | - | chr7.3:2332093-2332112 | MS.gene050461:intron | 25.0% |
| !!! | TATTTTCCATTGTTTGAAAC+TGG | - | chr7.3:2332553-2332572 | MS.gene050461:intron | 25.0% |
| !!! | TTATTTACTGACTTATGTTG+TGG | - | chr7.3:2333205-2333224 | MS.gene050461:intron | 25.0% |
| AAATAAAGTGAACCTGAGAA+AGG | + | chr7.3:2331483-2331502 | None:intergenic | 30.0% | |
| AAGATTAAGTTTCACTCTGA+AGG | + | chr7.3:2331738-2331757 | None:intergenic | 30.0% | |
| AATCAAGATGAAACAGGAAT+CGG | + | chr7.3:2331689-2331708 | None:intergenic | 30.0% | |
| CTAATAACATAGCACTTATG+AGG | + | chr7.3:2332388-2332407 | None:intergenic | 30.0% | |
| CTTGTAATATCAATCTTGGA+TGG | - | chr7.3:2331303-2331322 | MS.gene050461:intron | 30.0% | |
| GAAATTTCAAGGCAATTCAA+AGG | + | chr7.3:2332307-2332326 | None:intergenic | 30.0% | |
| GTAGAGTTTAAGAATTTCAG+AGG | + | chr7.3:2330456-2330475 | None:intergenic | 30.0% | |
| TACTATGCATGCAATTATCT+TGG | - | chr7.3:2332625-2332644 | MS.gene050461:intron | 30.0% | |
| TCAAAGTCTCAACAACTATT+GGG | + | chr7.3:2333101-2333120 | None:intergenic | 30.0% | |
| TCAAATAAACCAATCCAAAC+AGG | - | chr7.3:2331017-2331036 | MS.gene050461:CDS | 30.0% | |
| TCCAAGATTGATATTACAAG+TGG | + | chr7.3:2331303-2331322 | None:intergenic | 30.0% | |
| TCCACTTGTAATATCAATCT+TGG | - | chr7.3:2331299-2331318 | MS.gene050461:intron | 30.0% | |
| TCTTAGAGCCATTTATGATT+TGG | + | chr7.3:2332838-2332857 | None:intergenic | 30.0% | |
| TTGTATATGGAATGGAGTAT+AGG | - | chr7.3:2330777-2330796 | MS.gene050461:intron | 30.0% | |
| TTTCAATTGCAGATACTTGA+CGG | - | chr7.3:2330212-2330231 | MS.gene050461:CDS | 30.0% | |
| ! | AAAACTTCTGAAGGATATCT+TGG | - | chr7.3:2333479-2333498 | MS.gene050461:CDS | 30.0% |
| ! | AGAAAATCTATTCACTGACT+TGG | - | chr7.3:2331377-2331396 | MS.gene050461:intron | 30.0% |
| ! | ATTTTGCAAATCATGAATGC+TGG | - | chr7.3:2332989-2333008 | MS.gene050461:intron | 30.0% |
| ! | CAATCTTTGATAGGAGTTTT+AGG | + | chr7.3:2333063-2333082 | None:intergenic | 30.0% |
| ! | CATTCATGATTTGCAAAATG+TGG | + | chr7.3:2332988-2333007 | None:intergenic | 30.0% |
| ! | CTCTTCTTTTGTATATGGAA+TGG | - | chr7.3:2330769-2330788 | MS.gene050461:intron | 30.0% |
| ! | GATGGATTTGATGTACTTTA+TGG | - | chr7.3:2331118-2331137 | MS.gene050461:intron | 30.0% |
| ! | GTCAGTAAATAAAAGTTGGT+TGG | + | chr7.3:2333197-2333216 | None:intergenic | 30.0% |
| !! | AATGACTTGTTGAGAAAACA+TGG | - | chr7.3:2332698-2332717 | MS.gene050461:intron | 30.0% |
| !! | ATAATTTGAATTGGTGGACT+TGG | - | chr7.3:2330696-2330715 | MS.gene050461:intron | 30.0% |
| !! | GCTGTTTTCATAAACTATCT+TGG | - | chr7.3:2330904-2330923 | MS.gene050461:CDS | 30.0% |
| !! | TACTCTTCGTTTGTTATTTG+AGG | - | chr7.3:2331329-2331348 | MS.gene050461:intron | 30.0% |
| !! | TAGGAAGCACTGAAATAATA+AGG | - | chr7.3:2333316-2333335 | MS.gene050461:CDS | 30.0% |
| !!! | TCTTCACTTTTTCTTCCTTT+AGG | - | chr7.3:2332127-2332146 | MS.gene050461:intron | 30.0% |
| !!! | TGCATAAGCTATTTTTCAGA+GGG | - | chr7.3:2331824-2331843 | MS.gene050461:intron | 30.0% |
| !!! | TTGCATAAGCTATTTTTCAG+AGG | - | chr7.3:2331823-2331842 | MS.gene050461:intron | 30.0% |
| ACTTGGATGTTGAAGATAAG+GGG | - | chr7.3:2331394-2331413 | MS.gene050461:intron | 35.0% | |
| AGAATCATAGAAAAGAGCAG+CGG | + | chr7.3:2333400-2333419 | None:intergenic | 35.0% | |
| AGAATTAGAGAAAGAAGAGC+TGG | - | chr7.3:2333455-2333474 | MS.gene050461:CDS | 35.0% | |
| ATCTTTCTCTTTGGCTACAT+CGG | + | chr7.3:2333430-2333449 | None:intergenic | 35.0% | |
| ATTAAGCTGTTCATCCAAAC+AGG | + | chr7.3:2330804-2330823 | None:intergenic | 35.0% | |
| ATTTGGACTCTAACATTGTG+TGG | - | chr7.3:2330673-2330692 | MS.gene050461:intron | 35.0% | |
| CACCTCAAGATCTTGTATTA+CGG | + | chr7.3:2332777-2332796 | None:intergenic | 35.0% | |
| CATCACACAAAACAACCATA+AGG | + | chr7.3:2331585-2331604 | None:intergenic | 35.0% | |
| CTCAAAGTCTCAACAACTAT+TGG | + | chr7.3:2333102-2333121 | None:intergenic | 35.0% | |
| GAAGGATATCTTGGAGAAAA+TGG | - | chr7.3:2333488-2333507 | MS.gene050461:CDS | 35.0% | |
| GAAGTGGTACAATCTTTGAT+AGG | + | chr7.3:2333072-2333091 | None:intergenic | 35.0% | |
| GACTTGGATGTTGAAGATAA+GGG | - | chr7.3:2331393-2331412 | MS.gene050461:intron | 35.0% | |
| GAGATCAAAACAATCACTTC+TGG | + | chr7.3:2332211-2332230 | None:intergenic | 35.0% | |
| GTGTGGATAATTTGAATTGG+TGG | - | chr7.3:2330690-2330709 | MS.gene050461:intron | 35.0% | |
| TCAAAACAATCACTTCTGGT+AGG | + | chr7.3:2332207-2332226 | None:intergenic | 35.0% | |
| TTCTACTCCATCTTTCTCTT+TGG | + | chr7.3:2333439-2333458 | None:intergenic | 35.0% | |
| ! | ATGAAAGCCTCGTACATTTT+GGG | + | chr7.3:2332363-2332382 | None:intergenic | 35.0% |
| ! | GTTAAACAGCTTTCTAGAGA+AGG | - | chr7.3:2333260-2333279 | MS.gene050461:CDS | 35.0% |
| ! | GTTCTTGTTTCCAACTGAAT+CGG | - | chr7.3:2331546-2331565 | MS.gene050461:intron | 35.0% |
| ! | TATGAAAGCCTCGTACATTT+TGG | + | chr7.3:2332364-2332383 | None:intergenic | 35.0% |
| ! | TCACTCTGAAGGAAACAAAA+AGG | + | chr7.3:2331727-2331746 | None:intergenic | 35.0% |
| ! | TGACTTGGATGTTGAAGATA+AGG | - | chr7.3:2331392-2331411 | MS.gene050461:intron | 35.0% |
| ! | TGCTTTACATCATAGTCTTG+AGG | + | chr7.3:2331656-2331675 | None:intergenic | 35.0% |
| ! | TTTTCATTCCCAACACATCA+TGG | - | chr7.3:2332233-2332252 | MS.gene050461:intron | 35.0% |
| !! | AAATGGCTCTAAGATAAGAC+AGG | - | chr7.3:2332844-2332863 | MS.gene050461:intron | 35.0% |
| !! | GAACAAGAGCATTTCGAATT+TGG | + | chr7.3:2331434-2331453 | None:intergenic | 35.0% |
| !!! | CTTCATGTTTTGGAAAGAAG+AGG | - | chr7.3:2331232-2331251 | MS.gene050461:intron | 35.0% |
| !!! | GCATAAGCTATTTTTCAGAG+GGG | - | chr7.3:2331825-2331844 | MS.gene050461:intron | 35.0% |
| AACAGCCTCTTGTGTAAAAC+AGG | - | chr7.3:2331913-2331932 | MS.gene050461:intron | 40.0% | |
| AACAGGGACCAAGTTACTAT+GGG | + | chr7.3:2331043-2331062 | None:intergenic | 40.0% | |
| AACTATTGGGAAGTAGGAAG+TGG | + | chr7.3:2333088-2333107 | None:intergenic | 40.0% | |
| AATGGAGTATAGGTCCTGTT+TGG | - | chr7.3:2330787-2330806 | MS.gene050461:intron | 40.0% | |
| AATGTCGAGTAATTGAGCTC+CGG | + | chr7.3:2330291-2330310 | None:intergenic | 40.0% | |
| ACAAAACAAAAGGACCCGTT+TGG | + | chr7.3:2332062-2332081 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAACA+GGG | - | chr7.3:2331914-2331933 | MS.gene050461:intron | 40.0% | |
| ACAGGAAAAAGCCAATGCAA+AGG | - | chr7.3:2333287-2333306 | MS.gene050461:CDS | 40.0% | |
| AGAGCTGGTAAAACTTCTGA+AGG | - | chr7.3:2333470-2333489 | MS.gene050461:CDS | 40.0% | |
| AGAGCTGTATTGTGAACAGT+AGG | - | chr7.3:2332584-2332603 | MS.gene050461:intron | 40.0% | |
| CAAGCAAACTCCTGATATAC+TGG | + | chr7.3:2333534-2333553 | None:intergenic | 40.0% | |
| CCTAAAGAGTCTCACAAAGT+AGG | - | chr7.3:2330989-2331008 | MS.gene050461:CDS | 40.0% | |
| CCTACTTTGTGAGACTCTTT+AGG | + | chr7.3:2330992-2331011 | None:intergenic | 40.0% | |
| CGAAATGCTCTTGTTCAGAT+GGG | - | chr7.3:2331438-2331457 | MS.gene050461:intron | 40.0% | |
| CGTAATACAAGATCTTGAGG+TGG | - | chr7.3:2332775-2332794 | MS.gene050461:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr7.3:2331945-2331964 | MS.gene050461:intron | 40.0% | |
| CTCAACAACTATTGGGAAGT+AGG | + | chr7.3:2333094-2333113 | None:intergenic | 40.0% | |
| CTCAACAAGTCATTTAGCTG+AGG | + | chr7.3:2332692-2332711 | None:intergenic | 40.0% | |
| CTCTTGTGTAAAACAGGGTA+AGG | - | chr7.3:2331919-2331938 | MS.gene050461:intron | 40.0% | |
| GAAAAAGCCAATGCAAAGGA+TGG | - | chr7.3:2333291-2333310 | MS.gene050461:CDS | 40.0% | |
| GATGTAGCCAAAGAGAAAGA+TGG | - | chr7.3:2333429-2333448 | MS.gene050461:CDS | 40.0% | |
| GGCAAGCAATAGATACCTTA+TGG | - | chr7.3:2331567-2331586 | MS.gene050461:intron | 40.0% | |
| GTCCGTAATACAAGATCTTG+AGG | - | chr7.3:2332772-2332791 | MS.gene050461:intron | 40.0% | |
| GTCGTTGTCTATGTTGCAAT+TGG | - | chr7.3:2332471-2332490 | MS.gene050461:intron | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | - | chr7.3:2331870-2331889 | MS.gene050461:intron | 40.0% | |
| TAAAGTGAACCTGAGAAAGG+AGG | + | chr7.3:2331480-2331499 | None:intergenic | 40.0% | |
| TAACAGGGACCAAGTTACTA+TGG | + | chr7.3:2331044-2331063 | None:intergenic | 40.0% | |
| TAGCAGCCAGTTTCAAACAA+TGG | + | chr7.3:2332562-2332581 | None:intergenic | 40.0% | |
| TAGCTTATAAAAGGGCAACC+CGG | + | chr7.3:2332011-2332030 | None:intergenic | 40.0% | |
| TCCCTGTTATTAAGCTGTCT+GGG | - | chr7.3:2331055-2331074 | MS.gene050461:intron | 40.0% | |
| TCGAAATGCTCTTGTTCAGA+TGG | - | chr7.3:2331437-2331456 | MS.gene050461:intron | 40.0% | |
| TCGAAGAGTTCAAGATGTCA+CGG | + | chr7.3:2333173-2333192 | None:intergenic | 40.0% | |
| TGCCTTATCCATGATGTGTT+GGG | + | chr7.3:2332244-2332263 | None:intergenic | 40.0% | |
| TTCCCAACACATCATGGATA+AGG | - | chr7.3:2332239-2332258 | MS.gene050461:intron | 40.0% | |
| TTGAGAAAACATGGAGCTGA+TGG | - | chr7.3:2332707-2332726 | MS.gene050461:intron | 40.0% | |
| TTGCCTTATCCATGATGTGT+TGG | + | chr7.3:2332245-2332264 | None:intergenic | 40.0% | |
| TTTGCAAAATGTGGATGCTG+TGG | + | chr7.3:2332979-2332998 | None:intergenic | 40.0% | |
| ! | AGTTTACCACTATCTGAAGC+TGG | - | chr7.3:2333369-2333388 | MS.gene050461:CDS | 40.0% |
| ! | CAAAGGAACGACCAACTTTT+TGG | + | chr7.3:2332290-2332309 | None:intergenic | 40.0% |
| ! | CTTACCCTGTTTTACACAAG+AGG | + | chr7.3:2331921-2331940 | None:intergenic | 40.0% |
| ! | GACTTGGATTTGACTTTCGT+AGG | - | chr7.3:2330712-2330731 | MS.gene050461:intron | 40.0% |
| ! | GCAGCTATTGGCTAATGAAA+AGG | - | chr7.3:2333236-2333255 | MS.gene050461:intron | 40.0% |
| ! | TGAGTTGAGTCCAGTATATC+AGG | - | chr7.3:2333521-2333540 | MS.gene050461:CDS | 40.0% |
| ! | TTTTGCTCCCAAAATGTACG+AGG | - | chr7.3:2332353-2332372 | MS.gene050461:CDS | 40.0% |
| !! | ATTTTTCAGAGGGGTAACCT+TGG | - | chr7.3:2331834-2331853 | MS.gene050461:intron | 40.0% |
| !! | CTTTCTAGAGAAGGCATTAC+AGG | - | chr7.3:2333269-2333288 | MS.gene050461:CDS | 40.0% |
| !! | TCGTTTGTTATTTGAGGACG+AGG | - | chr7.3:2331335-2331354 | MS.gene050461:intron | 40.0% |
| AAGATAGATCGAGGTCTCTG+AGG | + | chr7.3:2330244-2330263 | None:intergenic | 45.0% | |
| ACTCCTTAGCGTTTCTCTCA+AGG | + | chr7.3:2333347-2333366 | None:intergenic | 45.0% | |
| AGAACCTGTCTTATCCCTTC+AGG | - | chr7.3:2330409-2330428 | MS.gene050461:CDS | 45.0% | |
| AGAATTTCAGAGGCCTTAGC+AGG | + | chr7.3:2330446-2330465 | None:intergenic | 45.0% | |
| AGGTTCGTATTCAGCCTGAA+GGG | + | chr7.3:2330426-2330445 | None:intergenic | 45.0% | |
| CAAACAGGCCCATAGTAACT+TGG | - | chr7.3:2331032-2331051 | MS.gene050461:CDS | 45.0% | |
| CAAGTTACTATGGGCCTGTT+TGG | + | chr7.3:2331034-2331053 | None:intergenic | 45.0% | |
| CCCCAGACAGCTTAATAACA+GGG | + | chr7.3:2331059-2331078 | None:intergenic | 45.0% | |
| CCCTGTTATTAAGCTGTCTG+GGG | - | chr7.3:2331056-2331075 | MS.gene050461:intron | 45.0% | |
| CTTCCTTGAGAGAAACGCTA+AGG | - | chr7.3:2333341-2333360 | MS.gene050461:CDS | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr7.3:2331944-2331963 | MS.gene050461:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr7.3:2331941-2331960 | MS.gene050461:intron | 45.0% | |
| GGATAAGACAGGTTCTGCAT+CGG | + | chr7.3:2330405-2330424 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | - | chr7.3:2331876-2331895 | MS.gene050461:intron | 45.0% | |
| GTCCCTGTTATTAAGCTGTC+TGG | - | chr7.3:2331054-2331073 | MS.gene050461:intron | 45.0% | |
| TACTATGGGCCTGTTTGGAT+TGG | + | chr7.3:2331029-2331048 | None:intergenic | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | - | chr7.3:2331877-2331896 | MS.gene050461:intron | 45.0% | |
| TCCTAGACCATCCTTTGCAT+TGG | + | chr7.3:2333301-2333320 | None:intergenic | 45.0% | |
| ! | ACCTTTGAGTTCATCTGCGA+TGG | + | chr7.3:2330486-2330505 | None:intergenic | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr7.3:2331910-2331929 | None:intergenic | 45.0% |
| ! | TTTGAGTTCATCTGCGATGG+CGG | + | chr7.3:2330483-2330502 | None:intergenic | 45.0% |
| !! | CTATTGCTTGCCGATTCAGT+TGG | + | chr7.3:2331559-2331578 | None:intergenic | 45.0% |
| !!! | AGCAGAGGTTTTGAGAGGAT+CGG | + | chr7.3:2330357-2330376 | None:intergenic | 45.0% |
| !!! | GTTTTGAGAGGATCGGGTAA+AGG | + | chr7.3:2330350-2330369 | None:intergenic | 45.0% |
| !!! | TTGAGAGCAGAGGTTTTGAG+AGG | + | chr7.3:2330362-2330381 | None:intergenic | 45.0% |
| !! | AAATATTAAAATCAAAATTA+CGG | + | chr7.3:2330571-2330590 | None:intergenic | 5.0% |
| !! | TATTATATTTATATAGTTTA+TGG | - | chr7.3:2331147-2331166 | MS.gene050461:intron | 5.0% |
| ACTAAAGCTCCCGCATATGC+AGG | + | chr7.3:2331985-2332004 | None:intergenic | 50.0% | |
| AGAGGGTGGAAGATAGATCG+AGG | + | chr7.3:2330253-2330272 | None:intergenic | 50.0% | |
| AGCTGATGGAGAAGAAGAGC+TGG | - | chr7.3:2332721-2332740 | MS.gene050461:intron | 50.0% | |
| AGTAATTGAGCTCCGGTGAC+CGG | + | chr7.3:2330284-2330303 | None:intergenic | 50.0% | |
| ATGGGAGTTCCTCCTTTCTC+AGG | - | chr7.3:2331468-2331487 | MS.gene050461:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr7.3:2331854-2331873 | None:intergenic | 50.0% | |
| CAGGTTCGTATTCAGCCTGA+AGG | + | chr7.3:2330427-2330446 | None:intergenic | 50.0% | |
| CTAAAGCTCCCGCATATGCA+GGG | + | chr7.3:2331984-2332003 | None:intergenic | 50.0% | |
| GAAGCTGTGCAAATTGTGCC+TGG | + | chr7.3:2332748-2332767 | None:intergenic | 50.0% | |
| GCCAATGCAAAGGATGGTCT+AGG | - | chr7.3:2333297-2333316 | MS.gene050461:CDS | 50.0% | |
| GCCATCGCAGATGAACTCAA+AGG | - | chr7.3:2330482-2330501 | MS.gene050461:CDS | 50.0% | |
| GCCCCAGACAGCTTAATAAC+AGG | + | chr7.3:2331060-2331079 | None:intergenic | 50.0% | |
| GCTGATGGAGAAGAAGAGCT+GGG | - | chr7.3:2332722-2332741 | MS.gene050461:intron | 50.0% | |
| GGCTGAATACGAACCTGCTA+AGG | - | chr7.3:2330430-2330449 | MS.gene050461:CDS | 50.0% | |
| GTGGACAATGCTGCAGCTAT+TGG | - | chr7.3:2333224-2333243 | MS.gene050461:intron | 50.0% | |
| GTTCTGCATCGGAGTTACTG+CGG | + | chr7.3:2330394-2330413 | None:intergenic | 50.0% | |
| TCAGCCTGAAGGGATAAGAC+AGG | + | chr7.3:2330416-2330435 | None:intergenic | 50.0% | |
| !! | GTTCAGATGGGTGTCGACAT+GGG | - | chr7.3:2331450-2331469 | MS.gene050461:intron | 50.0% |
| !! | TGTTCAGATGGGTGTCGACA+TGG | - | chr7.3:2331449-2331468 | MS.gene050461:intron | 50.0% |
| !!! | GCAGAGGTTTTGAGAGGATC+GGG | + | chr7.3:2330356-2330375 | None:intergenic | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr7.3:2331889-2331908 | MS.gene050461:intron | 55.0% | |
| GCATCGCCAGCTTCAGATAG+TGG | + | chr7.3:2333378-2333397 | None:intergenic | 55.0% | |
| TTCCACCCTCTTCGATCGTC+CGG | - | chr7.3:2330262-2330281 | MS.gene050461:CDS | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr7.3:2331989-2332008 | MS.gene050461:intron | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr7.3:2331843-2331862 | MS.gene050461:intron | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | + | chr7.3:2331972-2331991 | None:intergenic | 60.0% | |
| CTCTTCGATCGTCCGGTCAC+CGG | - | chr7.3:2330269-2330288 | MS.gene050461:CDS | 60.0% | |
| CTGCATCGGAGTTACTGCGG+CGG | + | chr7.3:2330391-2330410 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | chr7.3:2331972-2331991 | MS.gene050461:intron | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | chr7.3:2331973-2331992 | None:intergenic | 60.0% | |
| GGTGACCGGACGATCGAAGA+GGG | + | chr7.3:2330270-2330289 | None:intergenic | 60.0% | |
| TGGAGAAGAAGAGCTGGGCC+AGG | - | chr7.3:2332727-2332746 | MS.gene050461:intron | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | chr7.3:2331973-2331992 | MS.gene050461:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr7.3:2331957-2331976 | MS.gene050461:intron | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr7.3:2331990-2332009 | MS.gene050461:intron | 60.0% |
| CATCGGAGTTACTGCGGCGG+AGG | + | chr7.3:2330388-2330407 | None:intergenic | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | + | chr7.3:2331974-2331993 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr7.3:2331959-2331978 | None:intergenic | 65.0% | |
| CGGTGACCGGACGATCGAAG+AGG | + | chr7.3:2330271-2330290 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | chr7.3:2331978-2331997 | None:intergenic | 65.0% | |
| GACCGGACGATCGAAGAGGG+TGG | + | chr7.3:2330267-2330286 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | chr7.3:2331979-2331998 | None:intergenic | 65.0% | |
| CGGAGTTACTGCGGCGGAGG+CGG | + | chr7.3:2330385-2330404 | None:intergenic | 70.0% | |
| GCGGAGGCGGTTGAGAGCAG+AGG | + | chr7.3:2330372-2330391 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 2330194 | 2333554 | 2330194 | ID=MS.gene050461 |
| chr7.3 | mRNA | 2330194 | 2333554 | 2330194 | ID=MS.gene050461.t1;Parent=MS.gene050461 |
| chr7.3 | exon | 2333245 | 2333554 | 2333245 | ID=MS.gene050461.t1.exon1;Parent=MS.gene050461.t1 |
| chr7.3 | CDS | 2333245 | 2333554 | 2333245 | ID=cds.MS.gene050461.t1;Parent=MS.gene050461.t1 |
| chr7.3 | exon | 2332259 | 2332453 | 2332259 | ID=MS.gene050461.t1.exon2;Parent=MS.gene050461.t1 |
| chr7.3 | CDS | 2332259 | 2332453 | 2332259 | ID=cds.MS.gene050461.t1;Parent=MS.gene050461.t1 |
| chr7.3 | exon | 2330883 | 2331064 | 2330883 | ID=MS.gene050461.t1.exon3;Parent=MS.gene050461.t1 |
| chr7.3 | CDS | 2330883 | 2331064 | 2330883 | ID=cds.MS.gene050461.t1;Parent=MS.gene050461.t1 |
| chr7.3 | exon | 2330194 | 2330508 | 2330194 | ID=MS.gene050461.t1.exon4;Parent=MS.gene050461.t1 |
| chr7.3 | CDS | 2330194 | 2330508 | 2330194 | ID=cds.MS.gene050461.t1;Parent=MS.gene050461.t1 |
| Gene Sequence |
| Protein sequence |
