Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050526.t1 | XP_003626448.1 | 94 | 333 | 20 | 0 | 1 | 333 | 1 | 333 | 5.40E-164 | 587 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050526.t1 | G7L1W8 | 94.0 | 333 | 20 | 0 | 1 | 333 | 1 | 333 | 3.9e-164 | 587.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050461 | MS.gene050526 | 0.97058 | 7.81E-132 | -1.69E-46 |
| MS.gene050526 | MS.gene051959 | 0.817327 | 3.49E-52 | -1.69E-46 |
| MS.gene050526 | MS.gene051960 | 0.814094 | 1.84E-51 | -1.69E-46 |
| MS.gene050526 | MS.gene24099 | 0.833653 | 4.71E-56 | -1.69E-46 |
| MS.gene050526 | MS.gene27099 | 0.802698 | 4.96E-49 | -1.69E-46 |
| MS.gene050526 | MS.gene76159 | 0.811445 | 6.97E-51 | -1.69E-46 |
| MS.gene050526 | MS.gene88977 | 0.82264 | 2.13E-53 | -1.69E-46 |
| MS.gene050526 | MS.gene95833 | 0.804962 | 1.68E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050526.t1 | MTR_7g115070 | 93.994 | 333 | 20 | 0 | 1 | 333 | 1 | 333 | 0.0 | 615 |
| MS.gene050526.t1 | MTR_4g075610 | 25.220 | 341 | 234 | 8 | 4 | 328 | 13 | 348 | 9.94e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050526.t1 | AT5G28830 | 47.516 | 322 | 159 | 4 | 9 | 329 | 7 | 319 | 1.58e-93 | 281 |
Find 79 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACAAGAGCATTTCGAATT+TGG | 0.159707 | 7.4:+2466740 | None:intergenic |
| CATTTATGATTTGGATATTC+TGG | 0.221327 | 7.4:+2465541 | None:intergenic |
| CTTTCTAGAGAAGGCATTAC+AGG | 0.264117 | 7.4:-2465098 | MS.gene050526:CDS |
| CAGAATATCCAAATCATAAA+TGG | 0.264816 | 7.4:-2465540 | MS.gene050526:CDS |
| TCTTAGAGCCATTTATGATT+TGG | 0.286612 | 7.4:+2465532 | None:intergenic |
| TTCTACTCCATCTTTCTCTT+TGG | 0.290325 | 7.4:+2464931 | None:intergenic |
| GAAGGATATCTTGGAGAAAA+TGG | 0.301415 | 7.4:-2464879 | MS.gene050526:CDS |
| TAGGAAGCACTGAAATAATA+AGG | 0.338202 | 7.4:-2465051 | MS.gene050526:CDS |
| TACTCTTCGTTTGTTATTTG+AGG | 0.345060 | 7.4:-2466842 | MS.gene050526:CDS |
| CAAGCAAATTCCTGATATAC+TGG | 0.346426 | 7.4:+2464836 | None:intergenic |
| TCCACTTGTAATATCAATCT+TGG | 0.380514 | 7.4:-2466872 | MS.gene050526:CDS |
| TGAGTTGAGTCCAGTATATC+AGG | 0.384977 | 7.4:-2464846 | MS.gene050526:CDS |
| AAAACTTCTGAAGGATATCT+TGG | 0.389422 | 7.4:-2464888 | MS.gene050526:CDS |
| CACCTCAAGATCTTGTATTA+CGG | 0.410889 | 7.4:+2465593 | None:intergenic |
| ATGGGAGTTCCTCCTTTCTC+AGG | 0.411076 | 7.4:-2466703 | MS.gene050526:intron |
| TCCTAGACCATCCTTTGCAT+TGG | 0.420903 | 7.4:+2465069 | None:intergenic |
| CGGAGTTACTGCGGCGGAGG+CGG | 0.438740 | 7.4:+2467791 | None:intergenic |
| AGAATTAGAGAAAGAAGAGC+TGG | 0.471247 | 7.4:-2464912 | MS.gene050526:CDS |
| TCGAAATGCTCTTGTTCAGA+TGG | 0.472040 | 7.4:-2466734 | MS.gene050526:CDS |
| TGACTTGGATGTTGAAGATA+AGG | 0.475203 | 7.4:-2466779 | MS.gene050526:CDS |
| AGAACCTGTCTTATCCCTTC+AGG | 0.478321 | 7.4:-2467764 | MS.gene050526:CDS |
| GCATCGCCAGCTTCAGATAG+TGG | 0.478335 | 7.4:+2464992 | None:intergenic |
| AGCTGATGGAGAAGAAGAGC+TGG | 0.479736 | 7.4:-2465646 | MS.gene050526:CDS |
| TATATCAGGAATTTGCTTGA+GGG | 0.481052 | 7.4:-2464832 | None:intergenic |
| AGAATTTCAGAGGCCTTAGC+AGG | 0.483233 | 7.4:+2467730 | None:intergenic |
| GACTTGGATGTTGAAGATAA+GGG | 0.487262 | 7.4:-2466778 | MS.gene050526:CDS |
| TTTCAATTGCAGATACTTGA+CGG | 0.487273 | 7.4:-2467961 | MS.gene050526:CDS |
| TTCCACCCTCTTCGATCGTC+CGG | 0.488273 | 7.4:-2467911 | MS.gene050526:CDS |
| CTCTTCGATCGTCCGGTCAC+CGG | 0.490012 | 7.4:-2467904 | MS.gene050526:CDS |
| GCAGCTATTGGCTAATGAAA+AGG | 0.494904 | 7.4:-2465131 | MS.gene050526:intron |
| TGTTCAGATGGGTGTCGACA+TGG | 0.502109 | 7.4:-2466722 | MS.gene050526:CDS |
| AGTAATTGAGCTCCGGTGAC+CGG | 0.504241 | 7.4:+2467892 | None:intergenic |
| TCCAAGATTGATATTACAAG+TGG | 0.504798 | 7.4:+2466871 | None:intergenic |
| CATCGGAGTTACTGCGGCGG+AGG | 0.505314 | 7.4:+2467788 | None:intergenic |
| ACTCCTTAGCGTTTCTCTCA+AGG | 0.505546 | 7.4:+2465023 | None:intergenic |
| GTTAAACAGCTTTCTAGAGA+AGG | 0.518932 | 7.4:-2465107 | MS.gene050526:CDS |
| GGCTGAATACGAACCTGCTA+AGG | 0.519061 | 7.4:-2467743 | MS.gene050526:CDS |
| TCGTTTGTTATTTGAGGACG+AGG | 0.522527 | 7.4:-2466836 | MS.gene050526:CDS |
| GAAGCTGTGCAAATTGTGCC+TGG | 0.525415 | 7.4:+2465622 | None:intergenic |
| ACCTTTGAGTTCATCTGCGA+TGG | 0.525871 | 7.4:+2467690 | None:intergenic |
| AGTTTACCACTATCTGAAGC+TGG | 0.534057 | 7.4:-2464998 | MS.gene050526:CDS |
| AGAGCTGGTAAAACTTCTGA+AGG | 0.538021 | 7.4:-2464897 | MS.gene050526:CDS |
| CGAAATGCTCTTGTTCAGAT+GGG | 0.541994 | 7.4:-2466733 | MS.gene050526:CDS |
| GCCAATGCAAAGGATGGTCT+AGG | 0.545006 | 7.4:-2465070 | MS.gene050526:CDS |
| TTGAGAAAACATGGAGCTGA+TGG | 0.553099 | 7.4:-2465660 | MS.gene050526:CDS |
| TGGAGAAGAAGAGCTGGGCC+AGG | 0.553777 | 7.4:-2465640 | MS.gene050526:CDS |
| CTTGTAATATCAATCTTGGA+TGG | 0.554232 | 7.4:-2466868 | MS.gene050526:CDS |
| AAATAAAGTGAACCTGAGAA+AGG | 0.559843 | 7.4:+2466691 | None:intergenic |
| CTCAACAAGTCATTTAGCTG+AGG | 0.562667 | 7.4:+2465678 | None:intergenic |
| AGAAAATCTATTCACTGACT+TGG | 0.564086 | 7.4:-2466794 | MS.gene050526:CDS |
| CAGGTTCGTATTCAGCCTGA+AGG | 0.564340 | 7.4:+2467749 | None:intergenic |
| GATGTAGCCAAAGAGAAAGA+TGG | 0.571858 | 7.4:-2464938 | MS.gene050526:CDS |
| GTAGAGTTTAAGAATTTCAG+AGG | 0.572116 | 7.4:+2467720 | None:intergenic |
| AAATGGCTCTAAGATAAGAC+AGG | 0.572442 | 7.4:-2465523 | MS.gene050526:intron |
| GTTCAGATGGGTGTCGACAT+GGG | 0.576186 | 7.4:-2466721 | MS.gene050526:CDS |
| GTATATCAGGAATTTGCTTG+AGG | 0.579632 | 7.4:-2464833 | None:intergenic |
| TTTGAGTTCATCTGCGATGG+CGG | 0.586740 | 7.4:+2467693 | None:intergenic |
| GCGGAGGCGGTTGAGAGCAG+AGG | 0.594200 | 7.4:+2467804 | None:intergenic |
| TCAGCCTGAAGGGATAAGAC+AGG | 0.597889 | 7.4:+2467760 | None:intergenic |
| AATGACTTGTTGAGAAAACA+TGG | 0.598679 | 7.4:-2465669 | MS.gene050526:CDS |
| AGGTTCGTATTCAGCCTGAA+GGG | 0.599765 | 7.4:+2467750 | None:intergenic |
| GTCCGTAATACAAGATCTTG+AGG | 0.601507 | 7.4:-2465595 | MS.gene050526:CDS |
| ACTTGGATGTTGAAGATAAG+GGG | 0.605076 | 7.4:-2466777 | MS.gene050526:CDS |
| AATGTCGAGTAATTGAGCTC+CGG | 0.610555 | 7.4:+2467885 | None:intergenic |
| GGTGACCGGACGATCGAAGA+GGG | 0.613645 | 7.4:+2467906 | None:intergenic |
| AACCAAAGCAAAATGTCAGA+CGG | 0.617067 | 7.4:-2467991 | None:intergenic |
| GCTGATGGAGAAGAAGAGCT+GGG | 0.619298 | 7.4:-2465645 | MS.gene050526:CDS |
| CTTCCTTGAGAGAAACGCTA+AGG | 0.622043 | 7.4:-2465026 | MS.gene050526:CDS |
| GGATAAGACAGGTTCTGCAT+CGG | 0.626283 | 7.4:+2467771 | None:intergenic |
| TAAAGTGAACCTGAGAAAGG+AGG | 0.656771 | 7.4:+2466694 | None:intergenic |
| GACCGGACGATCGAAGAGGG+TGG | 0.662131 | 7.4:+2467909 | None:intergenic |
| CGGTGACCGGACGATCGAAG+AGG | 0.665064 | 7.4:+2467905 | None:intergenic |
| GCCATCGCAGATGAACTCAA+AGG | 0.672728 | 7.4:-2467691 | MS.gene050526:intron |
| CGTAATACAAGATCTTGAGG+TGG | 0.679321 | 7.4:-2465592 | MS.gene050526:CDS |
| GTTCTGCATCGGAGTTACTG+CGG | 0.681458 | 7.4:+2467782 | None:intergenic |
| AAGATAGATCGAGGTCTCTG+AGG | 0.689095 | 7.4:+2467932 | None:intergenic |
| CAAAGCAAAATGTCAGACGG+AGG | 0.696398 | 7.4:-2467988 | None:intergenic |
| AGAGGGTGGAAGATAGATCG+AGG | 0.703898 | 7.4:+2467923 | None:intergenic |
| CTGCATCGGAGTTACTGCGG+CGG | 0.709736 | 7.4:+2467785 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTTAATCTTTAATCTAA+TGG | - | chr7.4:2466389-2466408 | MS.gene050526:intron | 15.0% |
| !! | ATAGATATAAAAAACAATAC+AGG | + | chr7.4:2467355-2467374 | None:intergenic | 15.0% |
| !! | ATTTATAATAATGCATAATG+AGG | + | chr7.4:2465176-2465195 | None:intergenic | 15.0% |
| !! | TCAATAATAATGATATGAAT+AGG | + | chr7.4:2466264-2466283 | None:intergenic | 15.0% |
| !!! | ACTGAAACATAATATTTTTT+AGG | + | chr7.4:2467332-2467351 | None:intergenic | 15.0% |
| !!! | ATAATTATTTCTTCATGTTT+TGG | - | chr7.4:2465865-2465884 | MS.gene050526:intron | 15.0% |
| !!! | TTAATATTTTAGTTTCCTAA+AGG | + | chr7.4:2466592-2466611 | None:intergenic | 15.0% |
| !! | AAAAAATAAGTCAATCCAAA+CGG | - | chr7.4:2466491-2466510 | MS.gene050526:intron | 20.0% |
| !! | AAATTTCTATAATTGAGATC+TGG | - | chr7.4:2466767-2466786 | MS.gene050526:CDS | 20.0% |
| !! | AATTCTATGAACAAAACAAA+AGG | + | chr7.4:2466519-2466538 | None:intergenic | 20.0% |
| !! | ACAGAATTTCATATACTTTA+GGG | - | chr7.4:2465730-2465749 | MS.gene050526:intron | 20.0% |
| !! | ATAAGTCAGTAAATAAAAGT+TGG | + | chr7.4:2467648-2467667 | None:intergenic | 20.0% |
| !! | GAATATAATACTGCTTATAT+TGG | - | chr7.4:2465897-2465916 | MS.gene050526:intron | 20.0% |
| !! | TCTCAATTATAGAAATTTCA+AGG | + | chr7.4:2466765-2466784 | None:intergenic | 20.0% |
| !! | TCTGCTTATTTATGTTAAAA+AGG | + | chr7.4:2467112-2467131 | None:intergenic | 20.0% |
| !! | TTTCAAACAATGGAAAATAT+AGG | + | chr7.4:2466999-2467018 | None:intergenic | 20.0% |
| !!! | ACATAATTTATTTTGCTTTC+AGG | + | chr7.4:2466617-2466636 | None:intergenic | 20.0% |
| !!! | TTATTCTCTTCTTTTGTATA+TGG | - | chr7.4:2465407-2465426 | MS.gene050526:intron | 20.0% |
| !!! | TTGGTGTTCTATTTAAAATT+TGG | + | chr7.4:2466718-2466737 | None:intergenic | 20.0% |
| !!! | TTTAATTTTTCTTCGCTAAT+TGG | - | chr7.4:2465262-2465281 | MS.gene050526:intron | 20.0% |
| !!! | TTTTTTTTTTTTTGTCGTTC+TGG | - | chr7.4:2466163-2466182 | MS.gene050526:intron | 20.0% |
| ! | AAAAATAAGTCAATCCAAAC+GGG | - | chr7.4:2466492-2466511 | MS.gene050526:intron | 25.0% |
| ! | ACAAGTTTATATCTGTACAA+AGG | - | chr7.4:2466964-2466983 | MS.gene050526:intron | 25.0% |
| ! | ACTTGTGAAAATAAGCTAAA+AGG | - | chr7.4:2465573-2465592 | MS.gene050526:CDS | 25.0% |
| ! | ATAAGACATAACACATATGA+TGG | + | chr7.4:2466896-2466915 | None:intergenic | 25.0% |
| ! | ATTGTGTGGATAATTTGAAT+TGG | - | chr7.4:2465329-2465348 | MS.gene050526:intron | 25.0% |
| ! | CAGAATATCCAAATCATAAA+TGG | - | chr7.4:2467274-2467293 | MS.gene050526:intron | 25.0% |
| ! | CATATTAATCAAGATGAAAC+AGG | + | chr7.4:2466338-2466357 | None:intergenic | 25.0% |
| ! | GACAGAATTTCATATACTTT+AGG | - | chr7.4:2465729-2465748 | MS.gene050526:intron | 25.0% |
| ! | TAAATAGAACACCAAAAAGT+TGG | - | chr7.4:2466723-2466742 | MS.gene050526:CDS | 25.0% |
| ! | TAGTTTAGAGACTAAATAGA+TGG | - | chr7.4:2465834-2465853 | MS.gene050526:intron | 25.0% |
| ! | TAGTTTATGAAAACAGCTTA+CGG | + | chr7.4:2465544-2465563 | None:intergenic | 25.0% |
| !! | AAAAACGTGTTGATCAAATT+TGG | - | chr7.4:2465298-2465317 | MS.gene050526:intron | 25.0% |
| !! | AAATTTGATCAACACGTTTT+TGG | + | chr7.4:2465299-2465318 | None:intergenic | 25.0% |
| !! | CATTTATGATTTGGATATTC+TGG | + | chr7.4:2467276-2467295 | None:intergenic | 25.0% |
| !! | GACGAAAACAAAATTCTTTT+TGG | + | chr7.4:2467254-2467273 | None:intergenic | 25.0% |
| !! | TACTTTAGGGAATAAATTGA+TGG | - | chr7.4:2465743-2465762 | MS.gene050526:intron | 25.0% |
| !!! | TATTTTCCATTGTTTGAAAC+TGG | - | chr7.4:2467000-2467019 | MS.gene050526:intron | 25.0% |
| !!! | TTATTTACTGACTTATGTTG+TGG | - | chr7.4:2467652-2467671 | MS.gene050526:intron | 25.0% |
| AAATAAAGTGAACCTGAGAA+AGG | + | chr7.4:2466126-2466145 | None:intergenic | 30.0% | |
| AAGATTAAGTTTCACTCTGA+AGG | + | chr7.4:2466381-2466400 | None:intergenic | 30.0% | |
| AATCAAGATGAAACAGGAAT+CGG | + | chr7.4:2466332-2466351 | None:intergenic | 30.0% | |
| CTAATAACATAGCACTTATG+AGG | + | chr7.4:2466835-2466854 | None:intergenic | 30.0% | |
| CTTGTAATATCAATCTTGGA+TGG | - | chr7.4:2465946-2465965 | MS.gene050526:intron | 30.0% | |
| GAAATTTCAAGGCAATTCAA+AGG | + | chr7.4:2466754-2466773 | None:intergenic | 30.0% | |
| GTAGAGTTTAAGAATTTCAG+AGG | + | chr7.4:2465097-2465116 | None:intergenic | 30.0% | |
| TACTATGCATGCAATTATCT+TGG | - | chr7.4:2467072-2467091 | MS.gene050526:intron | 30.0% | |
| TCAAAACAATCACTACTGAT+AGG | + | chr7.4:2466654-2466673 | None:intergenic | 30.0% | |
| TCAAAGTCTCAACAACTATT+GGG | + | chr7.4:2467548-2467567 | None:intergenic | 30.0% | |
| TCAAATAAACCAATCCAAAC+AGG | - | chr7.4:2465660-2465679 | MS.gene050526:CDS | 30.0% | |
| TCCAAGATTGATATTACAAG+TGG | + | chr7.4:2465946-2465965 | None:intergenic | 30.0% | |
| TCCACTTGTAATATCAATCT+TGG | - | chr7.4:2465942-2465961 | MS.gene050526:intron | 30.0% | |
| TCTTAGAGCCATTTATGATT+TGG | + | chr7.4:2467285-2467304 | None:intergenic | 30.0% | |
| TTGTATATGGAATGGAGTAT+AGG | - | chr7.4:2465420-2465439 | MS.gene050526:intron | 30.0% | |
| TTTCAATTGCAGATACTTGA+CGG | - | chr7.4:2464853-2464872 | MS.gene050526:CDS | 30.0% | |
| ! | AAAACTTCTGAAGGATATCT+TGG | - | chr7.4:2467926-2467945 | MS.gene050526:CDS | 30.0% |
| ! | AGAAAATCTATTCACTGACT+TGG | - | chr7.4:2466020-2466039 | MS.gene050526:intron | 30.0% |
| ! | ATTTTGCAAATCATGAATGC+TGG | - | chr7.4:2467436-2467455 | MS.gene050526:intron | 30.0% |
| ! | CAATCTTTGATAGGAGTTTT+AGG | + | chr7.4:2467510-2467529 | None:intergenic | 30.0% |
| ! | CATTCATGATTTGCAAAATG+TGG | + | chr7.4:2467435-2467454 | None:intergenic | 30.0% |
| ! | CTCTTCTTTTGTATATGGAA+TGG | - | chr7.4:2465412-2465431 | MS.gene050526:intron | 30.0% |
| ! | GATGGATTTGATGTACTTTA+GGG | - | chr7.4:2465761-2465780 | MS.gene050526:intron | 30.0% |
| ! | GTCAGTAAATAAAAGTTGGT+TGG | + | chr7.4:2467644-2467663 | None:intergenic | 30.0% |
| ! | TTTTTCTTGTCATGAACAAC+TGG | - | chr7.4:2466540-2466559 | MS.gene050526:intron | 30.0% |
| !! | AATGACTTGTTGAGAAAACA+TGG | - | chr7.4:2467145-2467164 | MS.gene050526:intron | 30.0% |
| !! | ATAATTTGAATTGGTGGACT+TGG | - | chr7.4:2465338-2465357 | MS.gene050526:intron | 30.0% |
| !! | GCTGTTTTCATAAACTATCT+TGG | - | chr7.4:2465547-2465566 | MS.gene050526:CDS | 30.0% |
| !! | TACTCTTCGTTTGTTATTTG+AGG | - | chr7.4:2465972-2465991 | MS.gene050526:intron | 30.0% |
| !! | TAGGAAGCACTGAAATAATA+AGG | - | chr7.4:2467763-2467782 | MS.gene050526:CDS | 30.0% |
| !! | TGATGGATTTGATGTACTTT+AGG | - | chr7.4:2465760-2465779 | MS.gene050526:intron | 30.0% |
| !!! | TCTTCACTTTTTCTTCCTTT+AGG | - | chr7.4:2466574-2466593 | MS.gene050526:intron | 30.0% |
| ACTTGGATGTTGAAGATAAG+GGG | - | chr7.4:2466037-2466056 | MS.gene050526:intron | 35.0% | |
| AGAATTAGAGAAAGAAGAGC+TGG | - | chr7.4:2467902-2467921 | MS.gene050526:CDS | 35.0% | |
| ATTAAGCTGTTCATCCAAAC+AGG | + | chr7.4:2465447-2465466 | None:intergenic | 35.0% | |
| ATTTGGACTCTAACATTGTG+TGG | - | chr7.4:2465315-2465334 | MS.gene050526:intron | 35.0% | |
| CAAGCAAATTCCTGATATAC+TGG | + | chr7.4:2467981-2468000 | None:intergenic | 35.0% | |
| CACCTCAAGATCTTGTATTA+CGG | + | chr7.4:2467224-2467243 | None:intergenic | 35.0% | |
| CATCACACAAAACAACCATA+AGG | + | chr7.4:2466228-2466247 | None:intergenic | 35.0% | |
| CTCAAAGTCTCAACAACTAT+TGG | + | chr7.4:2467549-2467568 | None:intergenic | 35.0% | |
| GAAGGATATCTTGGAGAAAA+TGG | - | chr7.4:2467935-2467954 | MS.gene050526:CDS | 35.0% | |
| GAAGTGGTACAATCTTTGAT+AGG | + | chr7.4:2467519-2467538 | None:intergenic | 35.0% | |
| GACTTGGATGTTGAAGATAA+GGG | - | chr7.4:2466036-2466055 | MS.gene050526:intron | 35.0% | |
| GTGTGGATAATTTGAATTGG+TGG | - | chr7.4:2465332-2465351 | MS.gene050526:intron | 35.0% | |
| TTCTACTCCATCTTTCTCTT+TGG | + | chr7.4:2467886-2467905 | None:intergenic | 35.0% | |
| ! | ATGAAAGCCTCGTACATTTT+GGG | + | chr7.4:2466810-2466829 | None:intergenic | 35.0% |
| ! | GTTAAACAGCTTTCTAGAGA+AGG | - | chr7.4:2467707-2467726 | MS.gene050526:CDS | 35.0% |
| ! | GTTCTTGTTTCCAACTGAAT+CGG | - | chr7.4:2466189-2466208 | MS.gene050526:intron | 35.0% |
| ! | TATGAAAGCCTCGTACATTT+TGG | + | chr7.4:2466811-2466830 | None:intergenic | 35.0% |
| ! | TCACTCTGAAGGAAACAAAA+AGG | + | chr7.4:2466370-2466389 | None:intergenic | 35.0% |
| ! | TGACTTGGATGTTGAAGATA+AGG | - | chr7.4:2466035-2466054 | MS.gene050526:intron | 35.0% |
| ! | TGCTTTACATCATAGTCTTG+AGG | + | chr7.4:2466299-2466318 | None:intergenic | 35.0% |
| ! | TTTTCATTCCCAACACATCA+TGG | - | chr7.4:2466680-2466699 | MS.gene050526:intron | 35.0% |
| !! | AAATGGCTCTAAGATAAGAC+AGG | - | chr7.4:2467291-2467310 | MS.gene050526:intron | 35.0% |
| !! | GAACAAGAGCATTTCGAATT+TGG | + | chr7.4:2466077-2466096 | None:intergenic | 35.0% |
| !!! | CTTCATGTTTTGGAAAGAAG+AGG | - | chr7.4:2465875-2465894 | MS.gene050526:intron | 35.0% |
| AACAGGGACCAAGTTACTAT+GGG | + | chr7.4:2465686-2465705 | None:intergenic | 40.0% | |
| AACTATTGGGAAGTAGGAAG+TGG | + | chr7.4:2467535-2467554 | None:intergenic | 40.0% | |
| AATGGAGTATAGGTCCTGTT+TGG | - | chr7.4:2465430-2465449 | MS.gene050526:intron | 40.0% | |
| AATGTCGAGTAATTGAGCTC+CGG | + | chr7.4:2464932-2464951 | None:intergenic | 40.0% | |
| ACAAAACAAAAGGACCCGTT+TGG | + | chr7.4:2466509-2466528 | None:intergenic | 40.0% | |
| ACAGGAAAAAGCCAATGCAA+AGG | - | chr7.4:2467734-2467753 | MS.gene050526:CDS | 40.0% | |
| AGAGCTGGTAAAACTTCTGA+AGG | - | chr7.4:2467917-2467936 | MS.gene050526:CDS | 40.0% | |
| AGAGCTGTATTGTGAACAGT+AGG | - | chr7.4:2467031-2467050 | MS.gene050526:intron | 40.0% | |
| CCTAAAGAGTCTCACAAAGT+AGG | - | chr7.4:2465632-2465651 | MS.gene050526:CDS | 40.0% | |
| CCTACTTTGTGAGACTCTTT+AGG | + | chr7.4:2465635-2465654 | None:intergenic | 40.0% | |
| CGAAATGCTCTTGTTCAGAT+GGG | - | chr7.4:2466081-2466100 | MS.gene050526:intron | 40.0% | |
| CGTAATACAAGATCTTGAGG+TGG | - | chr7.4:2467222-2467241 | MS.gene050526:intron | 40.0% | |
| CTCAACAACTATTGGGAAGT+AGG | + | chr7.4:2467541-2467560 | None:intergenic | 40.0% | |
| CTCAACAAGTCATTTAGCTG+AGG | + | chr7.4:2467139-2467158 | None:intergenic | 40.0% | |
| GAAAAAGCCAATGCAAAGGA+TGG | - | chr7.4:2467738-2467757 | MS.gene050526:CDS | 40.0% | |
| GATGTAGCCAAAGAGAAAGA+TGG | - | chr7.4:2467876-2467895 | MS.gene050526:CDS | 40.0% | |
| GGCAAGCAATAGATACCTTA+TGG | - | chr7.4:2466210-2466229 | MS.gene050526:intron | 40.0% | |
| GTCCGTAATACAAGATCTTG+AGG | - | chr7.4:2467219-2467238 | MS.gene050526:intron | 40.0% | |
| GTCGTTGTCTATGTTGCAAT+TGG | - | chr7.4:2466918-2466937 | MS.gene050526:intron | 40.0% | |
| TAAAGTGAACCTGAGAAAGG+AGG | + | chr7.4:2466123-2466142 | None:intergenic | 40.0% | |
| TAACAGGGACCAAGTTACTA+TGG | + | chr7.4:2465687-2465706 | None:intergenic | 40.0% | |
| TAGCAGCCAGTTTCAAACAA+TGG | + | chr7.4:2467009-2467028 | None:intergenic | 40.0% | |
| TCCCTGTTATTAAGCTGTCT+GGG | - | chr7.4:2465698-2465717 | MS.gene050526:intron | 40.0% | |
| TCGAAATGCTCTTGTTCAGA+TGG | - | chr7.4:2466080-2466099 | MS.gene050526:intron | 40.0% | |
| TCGAAGAGTTCAAGATGTCA+CGG | + | chr7.4:2467620-2467639 | None:intergenic | 40.0% | |
| TGCCTTATCCATGATGTGTT+GGG | + | chr7.4:2466691-2466710 | None:intergenic | 40.0% | |
| TTCCCAACACATCATGGATA+AGG | - | chr7.4:2466686-2466705 | MS.gene050526:intron | 40.0% | |
| TTGAGAAAACATGGAGCTGA+TGG | - | chr7.4:2467154-2467173 | MS.gene050526:intron | 40.0% | |
| TTGCCTTATCCATGATGTGT+TGG | + | chr7.4:2466692-2466711 | None:intergenic | 40.0% | |
| TTTGCAAAATGTGGATGCTG+TGG | + | chr7.4:2467426-2467445 | None:intergenic | 40.0% | |
| ! | AGTTTACCACTATCTGAAGC+TGG | - | chr7.4:2467816-2467835 | MS.gene050526:CDS | 40.0% |
| ! | CAAAGGAACGACCAACTTTT+TGG | + | chr7.4:2466737-2466756 | None:intergenic | 40.0% |
| ! | GACTTGGATTTGACTTTCGT+AGG | - | chr7.4:2465354-2465373 | MS.gene050526:intron | 40.0% |
| ! | GCAGCTATTGGCTAATGAAA+AGG | - | chr7.4:2467683-2467702 | MS.gene050526:intron | 40.0% |
| ! | TGAGTTGAGTCCAGTATATC+AGG | - | chr7.4:2467968-2467987 | MS.gene050526:CDS | 40.0% |
| ! | TTTTGCTCCCAAAATGTACG+AGG | - | chr7.4:2466800-2466819 | MS.gene050526:CDS | 40.0% |
| !! | CTTTCTAGAGAAGGCATTAC+AGG | - | chr7.4:2467716-2467735 | MS.gene050526:CDS | 40.0% |
| !! | TCGTTTGTTATTTGAGGACG+AGG | - | chr7.4:2465978-2465997 | MS.gene050526:intron | 40.0% |
| AAGATAGATCGAGGTCTCTG+AGG | + | chr7.4:2464885-2464904 | None:intergenic | 45.0% | |
| ACTCCTTAGCGTTTCTCTCA+AGG | + | chr7.4:2467794-2467813 | None:intergenic | 45.0% | |
| AGAACCTGTCTTATCCCTTC+AGG | - | chr7.4:2465050-2465069 | MS.gene050526:CDS | 45.0% | |
| AGAATTTCAGAGGCCTTAGC+AGG | + | chr7.4:2465087-2465106 | None:intergenic | 45.0% | |
| AGGTTCGTATTCAGCCTGAA+GGG | + | chr7.4:2465067-2465086 | None:intergenic | 45.0% | |
| CAAACAGGCCCATAGTAACT+TGG | - | chr7.4:2465675-2465694 | MS.gene050526:CDS | 45.0% | |
| CAAGTTACTATGGGCCTGTT+TGG | + | chr7.4:2465677-2465696 | None:intergenic | 45.0% | |
| CCCCAGACAGCTTAATAACA+GGG | + | chr7.4:2465702-2465721 | None:intergenic | 45.0% | |
| CCCTGTTATTAAGCTGTCTG+GGG | - | chr7.4:2465699-2465718 | MS.gene050526:intron | 45.0% | |
| CTTCCTTGAGAGAAACGCTA+AGG | - | chr7.4:2467788-2467807 | MS.gene050526:CDS | 45.0% | |
| GGATAAGACAGGTTCTGCAT+CGG | + | chr7.4:2465046-2465065 | None:intergenic | 45.0% | |
| GTCCCTGTTATTAAGCTGTC+TGG | - | chr7.4:2465697-2465716 | MS.gene050526:intron | 45.0% | |
| TACTATGGGCCTGTTTGGAT+TGG | + | chr7.4:2465672-2465691 | None:intergenic | 45.0% | |
| TCCTAGACCATCCTTTGCAT+TGG | + | chr7.4:2467748-2467767 | None:intergenic | 45.0% | |
| ! | ACCTTTGAGTTCATCTGCGA+TGG | + | chr7.4:2465127-2465146 | None:intergenic | 45.0% |
| ! | TTTGAGTTCATCTGCGATGG+CGG | + | chr7.4:2465124-2465143 | None:intergenic | 45.0% |
| !! | CTATTGCTTGCCGATTCAGT+TGG | + | chr7.4:2466202-2466221 | None:intergenic | 45.0% |
| !!! | AGCAGAGGTTTTGAGAGGAT+CGG | + | chr7.4:2464998-2465017 | None:intergenic | 45.0% |
| !!! | GTTTTGAGAGGATCGGGTAA+AGG | + | chr7.4:2464991-2465010 | None:intergenic | 45.0% |
| !!! | TTGAGAGCAGAGGTTTTGAG+AGG | + | chr7.4:2465003-2465022 | None:intergenic | 45.0% |
| !! | AAATATTAAAATCAAAATTA+CGG | + | chr7.4:2465212-2465231 | None:intergenic | 5.0% |
| !! | TATTATATTTATATAGTTTA+TGG | - | chr7.4:2465790-2465809 | MS.gene050526:intron | 5.0% |
| AGAGGGTGGAAGATAGATCG+AGG | + | chr7.4:2464894-2464913 | None:intergenic | 50.0% | |
| AGCTGATGGAGAAGAAGAGC+TGG | - | chr7.4:2467168-2467187 | MS.gene050526:intron | 50.0% | |
| AGTAATTGAGCTCCGGTGAC+CGG | + | chr7.4:2464925-2464944 | None:intergenic | 50.0% | |
| ATGGGAGTTCCTCCTTTCTC+AGG | - | chr7.4:2466111-2466130 | MS.gene050526:intron | 50.0% | |
| CAGGTTCGTATTCAGCCTGA+AGG | + | chr7.4:2465068-2465087 | None:intergenic | 50.0% | |
| GAAGCTGTGCAAATTGTGCC+TGG | + | chr7.4:2467195-2467214 | None:intergenic | 50.0% | |
| GCCAATGCAAAGGATGGTCT+AGG | - | chr7.4:2467744-2467763 | MS.gene050526:CDS | 50.0% | |
| GCCATCGCAGATGAACTCAA+AGG | - | chr7.4:2465123-2465142 | MS.gene050526:CDS | 50.0% | |
| GCCCCAGACAGCTTAATAAC+AGG | + | chr7.4:2465703-2465722 | None:intergenic | 50.0% | |
| GCTGATGGAGAAGAAGAGCT+GGG | - | chr7.4:2467169-2467188 | MS.gene050526:intron | 50.0% | |
| GGCTGAATACGAACCTGCTA+AGG | - | chr7.4:2465071-2465090 | MS.gene050526:CDS | 50.0% | |
| GTGGACAATGCTGCAGCTAT+TGG | - | chr7.4:2467671-2467690 | MS.gene050526:intron | 50.0% | |
| GTTCTGCATCGGAGTTACTG+CGG | + | chr7.4:2465035-2465054 | None:intergenic | 50.0% | |
| TCAGCCTGAAGGGATAAGAC+AGG | + | chr7.4:2465057-2465076 | None:intergenic | 50.0% | |
| !! | GTTCAGATGGGTGTCGACAT+GGG | - | chr7.4:2466093-2466112 | MS.gene050526:intron | 50.0% |
| !! | TGTTCAGATGGGTGTCGACA+TGG | - | chr7.4:2466092-2466111 | MS.gene050526:intron | 50.0% |
| !!! | GCAGAGGTTTTGAGAGGATC+GGG | + | chr7.4:2464997-2465016 | None:intergenic | 50.0% |
| GCATCGCCAGCTTCAGATAG+TGG | + | chr7.4:2467825-2467844 | None:intergenic | 55.0% | |
| TTCCACCCTCTTCGATCGTC+CGG | - | chr7.4:2464903-2464922 | MS.gene050526:CDS | 55.0% | |
| CTCTTCGATCGTCCGGTCAC+CGG | - | chr7.4:2464910-2464929 | MS.gene050526:CDS | 60.0% | |
| CTGCATCGGAGTTACTGCGG+CGG | + | chr7.4:2465032-2465051 | None:intergenic | 60.0% | |
| GGTGACCGGACGATCGAAGA+GGG | + | chr7.4:2464911-2464930 | None:intergenic | 60.0% | |
| TGGAGAAGAAGAGCTGGGCC+AGG | - | chr7.4:2467174-2467193 | MS.gene050526:intron | 60.0% | |
| CATCGGAGTTACTGCGGCGG+AGG | + | chr7.4:2465029-2465048 | None:intergenic | 65.0% | |
| CGGTGACCGGACGATCGAAG+AGG | + | chr7.4:2464912-2464931 | None:intergenic | 65.0% | |
| GACCGGACGATCGAAGAGGG+TGG | + | chr7.4:2464908-2464927 | None:intergenic | 65.0% | |
| CGGAGTTACTGCGGCGGAGG+CGG | + | chr7.4:2465026-2465045 | None:intergenic | 70.0% | |
| GCGGAGGCGGTTGAGAGCAG+AGG | + | chr7.4:2465013-2465032 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 2464835 | 2468001 | 2464835 | ID=MS.gene050526 |
| chr7.4 | mRNA | 2464835 | 2468001 | 2464835 | ID=MS.gene050526.t1;Parent=MS.gene050526 |
| chr7.4 | exon | 2467692 | 2468001 | 2467692 | ID=MS.gene050526.t1.exon1;Parent=MS.gene050526.t1 |
| chr7.4 | CDS | 2467692 | 2468001 | 2467692 | ID=cds.MS.gene050526.t1;Parent=MS.gene050526.t1 |
| chr7.4 | exon | 2466704 | 2466898 | 2466704 | ID=MS.gene050526.t1.exon2;Parent=MS.gene050526.t1 |
| chr7.4 | CDS | 2466704 | 2466898 | 2466704 | ID=cds.MS.gene050526.t1;Parent=MS.gene050526.t1 |
| chr7.4 | exon | 2465524 | 2465705 | 2465524 | ID=MS.gene050526.t1.exon3;Parent=MS.gene050526.t1 |
| chr7.4 | CDS | 2465524 | 2465705 | 2465524 | ID=cds.MS.gene050526.t1;Parent=MS.gene050526.t1 |
| chr7.4 | exon | 2464835 | 2465149 | 2464835 | ID=MS.gene050526.t1.exon4;Parent=MS.gene050526.t1 |
| chr7.4 | CDS | 2464835 | 2465149 | 2464835 | ID=cds.MS.gene050526.t1;Parent=MS.gene050526.t1 |
| Gene Sequence |
| Protein sequence |
