AlfalfaGEDB | MS.gene88977

M. sativa cultivar XinJiangDaYe / MS.gene88977

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88977.t1	XP_003589562.1	91.7	254	14	2	1	254	1	247	1.60E-128	468.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88977.t1	Q9SGS5	31.6	285	132	9	4	250	13	272	6.3e-20	99.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88977.t1	G7I8D2	91.7	254	14	2	1	254	1	247	1.2e-128	468.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049181	MS.gene88977	0.847632	1.02E-59	-1.69E-46
MS.gene049457	MS.gene88977	0.815122	1.09E-51	-1.69E-46
MS.gene050363	MS.gene88977	0.818496	1.90E-52	-1.69E-46
MS.gene050461	MS.gene88977	0.805865	1.09E-49	-1.69E-46
MS.gene050526	MS.gene88977	0.82264	2.13E-53	-1.69E-46
MS.gene050883	MS.gene88977	0.815857	7.46E-52	-1.69E-46
MS.gene051959	MS.gene88977	0.82604	3.37E-54	-1.69E-46
MS.gene051960	MS.gene88977	0.825245	5.21E-54	-1.69E-46
MS.gene052053	MS.gene88977	0.812124	4.96E-51	-1.69E-46
MS.gene052091	MS.gene88977	0.850491	1.64E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88977.t1	MTR_1g026110	91.732	254	14	2	1	254	1	247	2.43e-163	452
MS.gene88977.t1	MTR_3g114750	48.485	264	98	11	4	250	2	244	3.07e-59	188

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88977.t1	AT1G76070	33.212	274	120	10	15	250	24	272	2.80e-28	108
MS.gene88977.t1	AT1G20310	34.686	271	120	11	1	247	1	238	3.51e-27	105

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Find 61 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCATGCTACTGGTAA+GGG	0.508213	1.4:+303884	MS.gene88977:CDS
AAATAGTGGTACATCTAATG+TGG	0.671533	1.4:+304387	MS.gene88977:CDS
AACAACAAAGCACCGCCGAT+GGG	0.567253	1.4:+304205	MS.gene88977:CDS
AAGAGAAACAAAGTAAGCTA+AGG	0.530956	1.4:+303756	MS.gene88977:CDS
AAGAGATCTTTGTTGGGTTT+TGG	0.236347	1.4:-304049	None:intergenic
AATCTCCTCATATCACCCAT+CGG	0.643282	1.4:-304220	None:intergenic
ACCTCCGTATCCACCTTTGG+TGG	0.491667	1.4:-304088	None:intergenic
AGAAAACCTAAAGATGGTGG+TGG	0.587690	1.4:+303950	MS.gene88977:CDS
AGAAAATAACACAAAGTCAT+GGG	0.481776	1.4:+303856	MS.gene88977:CDS
AGAAGAAAACCTAAAGATGG+TGG	0.634473	1.4:+303947	MS.gene88977:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAGTGGTACATCTAATG+TGG	+	chr1.4:304387-304406	MS.gene88977:CDS	30.0%
AAGAGAAACAAAGTAAGCTA+AGG	+	chr1.4:303756-303775	MS.gene88977:CDS	30.0%
CAAAGATTAATCTCATTCCT+TGG	-	chr1.4:304430-304449	None:intergenic	30.0%
CAAGGAATGAGATTAATCTT+TGG	+	chr1.4:304428-304447	MS.gene88977:CDS	30.0%
CAGAAAATAACACAAAGTCA+TGG	+	chr1.4:303855-303874	MS.gene88977:CDS	30.0%
GAAAATAACACAAAGTCATG+GGG	+	chr1.4:303857-303876	MS.gene88977:CDS	30.0%
TATGGAATCATAGTAACCAT+AGG	-	chr1.4:303920-303939	None:intergenic	30.0%
TCACCAAAGATTTCTTGTAT+GGG	+	chr1.4:303995-304014	MS.gene88977:CDS	30.0%
TTCACCAAAGATTTCTTGTA+TGG	+	chr1.4:303994-304013	MS.gene88977:CDS	30.0%
AAAAACTCATGCTACTGGTA+AGG	+	chr1.4:303883-303902	MS.gene88977:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	303749	304513	303749	ID=MS.gene88977
chr1.4	mRNA	303749	304513	303749	ID=MS.gene88977.t1;Parent=MS.gene88977
chr1.4	exon	303749	304513	303749	ID=MS.gene88977.t1.exon1;Parent=MS.gene88977.t1
chr1.4	CDS	303749	304513	303749	ID=cds.MS.gene88977.t1;Parent=MS.gene88977.t1

Gene Sequence

>MS.gene88977

ATGGAGAAAGAGAAACAAAGTAAGCTAAGGAACAAGTTCATGAAAGCAATCACAATTACATTTCAAAACGCTCCTTTCAGTCCAGGAAGAGATCACAAATTTAGATCAGAAAATAACACAAAGTCATGGGGTGCAAAAACTCATGCTACTGGTAAGGGATTTTCTGGACCTATGGTTACTATGATTCCATATGAAGCTAGAAGAAAACCTAAAGATGGTGGTGGCAATGAAACTCAAGAACCTACTTCACCAAAGATTTCTTGTATGGGACAGATCAAGCATCACAAGAAGAAACATATTCCAAAACCCAACAAAGATCTCTTCACTTCCGTGTCCACTCCACCAAAGGTGGATACGGAGGTAAAGAGATCGAAGTTTCAGAGGATTTTTTCGCAGAGGTCTAAAGCGAAATTTGCGGAAAGGAAATCAGATGGTTCTGGATTTGTTGATGAAGGGAACAACAAAGCACCGCCGATGGGTGATATGAGGAGATTTGCAAGTGGACGTGAGGCTTTTTCTAAATTTGATTGGAAGGCAGTGATTGAGCCTGAAGAAATTGATCAAAGGGATTGCTTTACTGATGGAGAGGAGGATGAAATTTTGATTCCATTTTCTGCACCTATTTTAGGTGTTGGTGGAAATAGTGGTACATCTAATGTGGCTGATTTGAAGTTTAAGCCAAGGAATGAGATTAATCTTTGGAAGAGAAGAACAATGGCTCCACCTAGGCCTCTTCAGTTGAATCCTGTGCTTAAAGCTAAATAA

Protein sequence

>MS.gene88977.t1

MEKEKQSKLRNKFMKAITITFQNAPFSPGRDHKFRSENNTKSWGAKTHATGKGFSGPMVTMIPYEARRKPKDGGGNETQEPTSPKISCMGQIKHHKKKHIPKPNKDLFTSVSTPPKVDTEVKRSKFQRIFSQRSKAKFAERKSDGSGFVDEGNNKAPPMGDMRRFASGREAFSKFDWKAVIEPEEIDQRDCFTDGEEDEILIPFSAPILGVGGNSGTSNVADLKFKPRNEINLWKRRTMAPPRPLQLNPVLKAK