Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05049.t1 | XP_003600605.1 | 84.2 | 525 | 5 | 1 | 1 | 447 | 1 | 525 | 1.70E-226 | 795 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05049.t1 | O62703 | 36.3 | 479 | 215 | 8 | 53 | 444 | 85 | 560 | 4.1e-67 | 256.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05049.t1 | G7J7W2 | 84.2 | 525 | 5 | 1 | 1 | 447 | 1 | 525 | 1.3e-226 | 795.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47154 | MS.gene05049 | PPI |
| MS.gene74436 | MS.gene05049 | PPI |
| MS.gene55513 | MS.gene05049 | PPI |
| MS.gene074082 | MS.gene05049 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05049.t1 | MTR_3g064180 | 74.095 | 525 | 58 | 6 | 1 | 447 | 1 | 525 | 0.0 | 714 |
| MS.gene05049.t1 | MTR_8g023320 | 94.783 | 115 | 6 | 0 | 84 | 198 | 42 | 156 | 2.06e-67 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05049.t1 | AT3G02710 | 54.253 | 529 | 160 | 9 | 1 | 447 | 1 | 529 | 4.50e-172 | 493 |
Find 101 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGTTGGTTGCTGTCATTT+TGG | 0.177787 | 3.4:+65886775 | MS.gene05049:intron |
| TCGCTAGTTGCTTCATTATT+TGG | 0.204309 | 3.4:+65885583 | MS.gene05049:CDS |
| ACGGCGAATCAGAAGAAATT+AGG | 0.244465 | 3.4:+65885039 | MS.gene05049:CDS |
| AAAGATTCAGAAGTTCTTAA+TGG | 0.254674 | 3.4:+65887202 | MS.gene05049:CDS |
| TGATGTTGTTACGTTGATTC+AGG | 0.256713 | 3.4:+65884696 | MS.gene05049:CDS |
| GTGGCTGTTGGGGAAGATTA+AGG | 0.265756 | 3.4:+65884951 | MS.gene05049:CDS |
| GCAGTATGCATCGGAGATTT+TGG | 0.271538 | 3.4:+65884996 | MS.gene05049:CDS |
| GCGAACCGTTCGGGTTGATT+TGG | 0.294786 | 3.4:-65884529 | None:intergenic |
| TAAGCTTGTGAAGCTCTTCA+TGG | 0.319731 | 3.4:-65884570 | None:intergenic |
| ATCTGGACTTTATACTCTTC+AGG | 0.322599 | 3.4:+65886491 | MS.gene05049:CDS |
| TAGGAATATCATGACAATAT+TGG | 0.328004 | 3.4:+65887140 | MS.gene05049:intron |
| TCAGAATCCGCGAACCGTTC+GGG | 0.344397 | 3.4:-65884538 | None:intergenic |
| TGTGCTCGCTCCTTCTCTTC+TGG | 0.344836 | 3.4:-65887176 | None:intergenic |
| CACAAGCTTAAAGTTCTTGC+TGG | 0.345339 | 3.4:+65884583 | MS.gene05049:CDS |
| GACAATATTGGCGATCTTGA+TGG | 0.349058 | 3.4:+65887152 | MS.gene05049:CDS |
| CTCCTTCGAACGCCGATTGA+AGG | 0.356969 | 3.4:+65884480 | MS.gene05049:CDS |
| GGATGAGCGGTTGCGGGTGG+TGG | 0.364644 | 3.4:-65884329 | None:intergenic |
| GACGGCGTCGATTGTGGGTT+GGG | 0.368993 | 3.4:-65884428 | None:intergenic |
| TACAATCGTAAACTAGAATC+TGG | 0.374374 | 3.4:+65886474 | MS.gene05049:CDS |
| TGAGCGGTTGCGGGTGGTGG+TGG | 0.378306 | 3.4:-65884326 | None:intergenic |
| TTGTCGACGGCGTCGATTGT+GGG | 0.383086 | 3.4:-65884433 | None:intergenic |
| ACGGTTCGCGGATTCTGAAT+TGG | 0.390591 | 3.4:+65884543 | MS.gene05049:CDS |
| AGAAATTAGGGCAGATGAAT+GGG | 0.391464 | 3.4:+65885052 | MS.gene05049:CDS |
| GCGTTTGGATGAGCGGTTGC+GGG | 0.408371 | 3.4:-65884335 | None:intergenic |
| GAACAAGAAAGACCGGTATC+AGG | 0.410684 | 3.4:+65885537 | MS.gene05049:CDS |
| TGGGGTGGATGTGATGCTTC+AGG | 0.413573 | 3.4:+65885071 | MS.gene05049:CDS |
| TTCAGAATCCGCGAACCGTT+CGG | 0.415116 | 3.4:-65884539 | None:intergenic |
| CGGCGAATCAGAAGAAATTA+GGG | 0.423619 | 3.4:+65885040 | MS.gene05049:CDS |
| GCATGTCAAGGATATACTTC+AGG | 0.429337 | 3.4:+65886969 | MS.gene05049:CDS |
| CCGGTATCAGGAGGAGTTAG+AGG | 0.434522 | 3.4:+65885549 | MS.gene05049:CDS |
| CGGTTGCGGGTGGTGGTGGA+TGG | 0.435184 | 3.4:-65884322 | None:intergenic |
| GGATGTGATGCTTCAGGCGG+TGG | 0.439840 | 3.4:+65885077 | MS.gene05049:CDS |
| ACGAGTGCGAGAAGATAGAT+AGG | 0.440196 | 3.4:+65886081 | MS.gene05049:CDS |
| GCAGAATTTGCATCGGTTGT+CGG | 0.443160 | 3.4:+65884813 | MS.gene05049:CDS |
| CGACGGCGTCGATTGTGGGT+TGG | 0.448251 | 3.4:-65884429 | None:intergenic |
| AAGAAATTAGGGCAGATGAA+TGG | 0.450478 | 3.4:+65885051 | MS.gene05049:CDS |
| TGTTGGGGAAGATTAAGGTT+AGG | 0.455452 | 3.4:+65884956 | MS.gene05049:CDS |
| CGAGAAGATAGATAGGCTAA+TGG | 0.461422 | 3.4:+65886088 | MS.gene05049:CDS |
| GAATTTAATTGAGGTGAAAC+CGG | 0.465389 | 3.4:+65884888 | MS.gene05049:CDS |
| TGGAGCACCGGAGCTTTATC+CGG | 0.467966 | 3.4:+65884603 | MS.gene05049:CDS |
| TCTTCCTCATCCGAACTCTT+CGG | 0.471486 | 3.4:-65885120 | None:intergenic |
| TCAAATTGAGTTTGATGACT+TGG | 0.471831 | 3.4:+65886343 | MS.gene05049:CDS |
| TTCCTTCAATCGGCGTTCGA+AGG | 0.479470 | 3.4:-65884482 | None:intergenic |
| GTCAAAGGATCCGAAGAGTT+CGG | 0.480571 | 3.4:+65885110 | MS.gene05049:CDS |
| GTGGAATCTTGAGGGGCTCT+AGG | 0.483156 | 3.4:+65886027 | MS.gene05049:CDS |
| AAGTTGTTGAAGTGGCTGTT+GGG | 0.484456 | 3.4:+65884940 | MS.gene05049:CDS |
| GACGATTGAGAATTTAATTG+AGG | 0.489551 | 3.4:+65884879 | MS.gene05049:CDS |
| CTTTCCAGGTGGAATCTTGA+GGG | 0.489985 | 3.4:+65886019 | MS.gene05049:intron |
| TGCGTTTGGATGAGCGGTTG+CGG | 0.491992 | 3.4:-65884336 | None:intergenic |
| GGTGTCGTTGAATTTGCGTT+TGG | 0.492933 | 3.4:-65884350 | None:intergenic |
| GTTGTCGACGGCGTCGATTG+TGG | 0.497342 | 3.4:-65884434 | None:intergenic |
| GGTTCTTGTTGATGCGCTTG+TGG | 0.498065 | 3.4:+65884765 | MS.gene05049:CDS |
| GTTGGGGAAGATTAAGGTTA+GGG | 0.503090 | 3.4:+65884957 | MS.gene05049:CDS |
| GGCTAATGGAACTATACATC+AGG | 0.506522 | 3.4:+65886102 | MS.gene05049:CDS |
| AAAAGCTGAAACTGAACGGT+TGG | 0.509025 | 3.4:+65886319 | MS.gene05049:CDS |
| CCTCTAACTCCTCCTGATAC+CGG | 0.509491 | 3.4:-65885549 | None:intergenic |
| ACATTGAGGTTAACAAGATC+CGG | 0.510454 | 3.4:-65884622 | None:intergenic |
| TAAAGTTCTTGCTGGAGCAC+CGG | 0.510985 | 3.4:+65884591 | MS.gene05049:CDS |
| AAATCAACCCGAACGGTTCG+CGG | 0.511816 | 3.4:+65884531 | MS.gene05049:CDS |
| TTTGCATCGGTTGTCGGAGA+AGG | 0.512034 | 3.4:+65884819 | MS.gene05049:CDS |
| GAAACCGGCTGTGGCGGAGA+TGG | 0.513966 | 3.4:+65884903 | MS.gene05049:CDS |
| AGAGAGATCGATGTCGTTGG+TGG | 0.524918 | 3.4:-65884383 | None:intergenic |
| GAGATCGATGTCGTTGGTGG+AGG | 0.529331 | 3.4:-65884380 | None:intergenic |
| AATTGAGTTTGATGACTTGG+AGG | 0.536575 | 3.4:+65886346 | MS.gene05049:CDS |
| TGAGGTGAAACCGGCTGTGG+CGG | 0.543460 | 3.4:+65884897 | MS.gene05049:CDS |
| TCTTTCCAGGTGGAATCTTG+AGG | 0.544919 | 3.4:+65886018 | MS.gene05049:intron |
| GCATCAACAAGAACCTTAGC+AGG | 0.545350 | 3.4:-65884757 | None:intergenic |
| GGATCCGAAGAGTTCGGATG+AGG | 0.551516 | 3.4:+65885116 | MS.gene05049:CDS |
| TGAATTTGCGTTTGGATGAG+CGG | 0.551592 | 3.4:-65884342 | None:intergenic |
| AATTGAGGTGAAACCGGCTG+TGG | 0.552046 | 3.4:+65884894 | MS.gene05049:CDS |
| GTCGTTGGTGGAGGATGAAA+CGG | 0.556914 | 3.4:-65884371 | None:intergenic |
| GAAGTTGTTGAAGTGGCTGT+TGG | 0.565011 | 3.4:+65884939 | MS.gene05049:CDS |
| TCGGTTGTCGGAGAAGGATG+CGG | 0.566965 | 3.4:+65884825 | MS.gene05049:CDS |
| CAAACCATCTCCGCCACAGC+CGG | 0.575852 | 3.4:-65884907 | None:intergenic |
| ACAAGATCCGGATAAAGCTC+CGG | 0.577304 | 3.4:-65884610 | None:intergenic |
| TTTCCAGGTGGAATCTTGAG+GGG | 0.579676 | 3.4:+65886020 | MS.gene05049:intron |
| TGCTTGTGCAGAATTTGCAT+CGG | 0.590572 | 3.4:+65884806 | MS.gene05049:CDS |
| GAGTTCGGATGAGGAAGAGA+TGG | 0.592926 | 3.4:+65885125 | MS.gene05049:CDS |
| TCTTGATGGACCAGAAGAGA+AGG | 0.605271 | 3.4:+65887166 | MS.gene05049:CDS |
| GCTTGTGGATTGTAGTGTGT+TGG | 0.607878 | 3.4:+65884780 | MS.gene05049:CDS |
| TCAATCGGCGTTCGAAGGAG+AGG | 0.608106 | 3.4:-65884477 | None:intergenic |
| TTTGGATGAGCGGTTGCGGG+TGG | 0.608239 | 3.4:-65884332 | None:intergenic |
| TGAGAATGATGAACCTGCTA+AGG | 0.609377 | 3.4:+65884744 | MS.gene05049:CDS |
| AAGAGAGAGATCGATGTCGT+TGG | 0.609485 | 3.4:-65884386 | None:intergenic |
| GTCAGGCATTCGCAAATGAG+AGG | 0.613294 | 3.4:+65886904 | MS.gene05049:intron |
| GAGTAAAAGCTGAAACTGAA+CGG | 0.614348 | 3.4:+65886315 | MS.gene05049:CDS |
| TTCAACAAATCAACAATCGA+CGG | 0.618753 | 3.4:-65884649 | None:intergenic |
| GAAATTAGGGCAGATGAATG+GGG | 0.620033 | 3.4:+65885053 | MS.gene05049:CDS |
| GGTGGCAATGTATAAGTCAA+AGG | 0.621431 | 3.4:+65885095 | MS.gene05049:CDS |
| CAATCGACGGAACAACATTG+AGG | 0.625918 | 3.4:-65884636 | None:intergenic |
| TAGTAATAAGCAGTATGCAT+CGG | 0.627164 | 3.4:+65884987 | MS.gene05049:CDS |
| ATTAGGGCAGATGAATGGGG+TGG | 0.628187 | 3.4:+65885056 | MS.gene05049:CDS |
| AGAAGACGAAGTTGTTGAAG+TGG | 0.628312 | 3.4:+65884932 | MS.gene05049:CDS |
| ACTTAGTAAACAGCATGTCA+AGG | 0.628328 | 3.4:+65886957 | MS.gene05049:CDS |
| CAAGAAAGACCGGTATCAGG+AGG | 0.636862 | 3.4:+65885540 | MS.gene05049:CDS |
| GGTGGATGTGATGCTTCAGG+CGG | 0.654680 | 3.4:+65885074 | MS.gene05049:CDS |
| AGTTGTTGAAGTGGCTGTTG+GGG | 0.656007 | 3.4:+65884941 | MS.gene05049:CDS |
| AGTATCCAAATCAACCCGAA+CGG | 0.674000 | 3.4:+65884524 | MS.gene05049:CDS |
| CGCCAGCGTATTATAAACCG+CGG | 0.684567 | 3.4:-65884857 | None:intergenic |
| TGCCGCGGTTTATAATACGC+TGG | 0.697372 | 3.4:+65884855 | MS.gene05049:CDS |
| GGATGCGGATGAGAATGCCG+CGG | 0.741133 | 3.4:+65884840 | MS.gene05049:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTAAAAGAAAAAATTA+AGG | - | chr3.4:65885980-65885999 | None:intergenic | 10.0% |
| !! | TTTGCTAAATAAAATAAAAA+AGG | - | chr3.4:65886412-65886431 | None:intergenic | 10.0% |
| !!! | ATATTTCTGTATTTAATAGA+TGG | + | chr3.4:65886437-65886456 | MS.gene05049:intron | 15.0% |
| !!! | TTTATATATGATTTTTCAGT+TGG | + | chr3.4:65886760-65886779 | MS.gene05049:intron | 15.0% |
| !! | TAAACTAGATTAATACAGAA+TGG | - | chr3.4:65886192-65886211 | None:intergenic | 20.0% |
| !! | TAACATATATACTTTACCAT+TGG | + | chr3.4:65885702-65885721 | MS.gene05049:intron | 20.0% |
| !! | TTCATTGTTATCTTGTAAAT+CGG | + | chr3.4:65885458-65885477 | MS.gene05049:intron | 20.0% |
| !!! | TTCTTGTTCTTTTTACTAAT+GGG | - | chr3.4:65885526-65885545 | None:intergenic | 20.0% |
| !!! | TTTCTTGTTCTTTTTACTAA+TGG | - | chr3.4:65885527-65885546 | None:intergenic | 20.0% |
| ! | AAAGATTCAGAAGTTCTTAA+TGG | + | chr3.4:65887202-65887221 | MS.gene05049:CDS | 25.0% |
| ! | AGAGATGATTTAATTAAGTC+AGG | - | chr3.4:65886883-65886902 | None:intergenic | 25.0% |
| ! | ATCTCAAATGCAATTTGAAA+TGG | - | chr3.4:65886646-65886665 | None:intergenic | 25.0% |
| ! | ATGATAGAACTGTCTAATAT+GGG | + | chr3.4:65885824-65885843 | MS.gene05049:intron | 25.0% |
| ! | CAATATCACATAACTGATAA+GGG | - | chr3.4:65885674-65885693 | None:intergenic | 25.0% |
| ! | TAAATTTGTCAGTATGAAAC+AGG | - | chr3.4:65886744-65886763 | None:intergenic | 25.0% |
| ! | TAGGAATATCATGACAATAT+TGG | + | chr3.4:65887140-65887159 | MS.gene05049:intron | 25.0% |
| ! | TATTATGAAGCAGAAGAAAT+TGG | + | chr3.4:65885242-65885261 | MS.gene05049:intron | 25.0% |
| ! | TCAATATCACATAACTGATA+AGG | - | chr3.4:65885675-65885694 | None:intergenic | 25.0% |
| ! | TGACTTAATTAAATCATCTC+TGG | + | chr3.4:65886882-65886901 | MS.gene05049:intron | 25.0% |
| ! | TTAATACAGAATGGAACAAA+TGG | - | chr3.4:65886183-65886202 | None:intergenic | 25.0% |
| !! | TATTTTGTTACTGTTTGTGT+TGG | + | chr3.4:65887034-65887053 | MS.gene05049:intron | 25.0% |
| AAAAGATGCAACTACTTACT+CGG | - | chr3.4:65886816-65886835 | None:intergenic | 30.0% | |
| GAATTTAATTGAGGTGAAAC+CGG | + | chr3.4:65884888-65884907 | MS.gene05049:CDS | 30.0% | |
| GACGATTGAGAATTTAATTG+AGG | + | chr3.4:65884879-65884898 | MS.gene05049:CDS | 30.0% | |
| GATGATAGAACTGTCTAATA+TGG | + | chr3.4:65885823-65885842 | MS.gene05049:intron | 30.0% | |
| GTAAAAAGAACAAGAAAGAC+CGG | + | chr3.4:65885530-65885549 | MS.gene05049:CDS | 30.0% | |
| GTGTAGAATCATAAAAGTTG+TGG | + | chr3.4:65886233-65886252 | MS.gene05049:intron | 30.0% | |
| TAATTAAATCATCTCTGGTC+AGG | + | chr3.4:65886887-65886906 | MS.gene05049:intron | 30.0% | |
| TACAATCGTAAACTAGAATC+TGG | + | chr3.4:65886474-65886493 | MS.gene05049:CDS | 30.0% | |
| TAGTAATAAGCAGTATGCAT+CGG | + | chr3.4:65884987-65885006 | MS.gene05049:CDS | 30.0% | |
| TCTAGAGAGTTCTACAAAAT+TGG | - | chr3.4:65885414-65885433 | None:intergenic | 30.0% | |
| TGATAGAACTGTCTAATATG+GGG | + | chr3.4:65885825-65885844 | MS.gene05049:intron | 30.0% | |
| TTAGACAGTTCTATCATCTA+AGG | - | chr3.4:65885821-65885840 | None:intergenic | 30.0% | |
| TTCAACAAATCAACAATCGA+CGG | - | chr3.4:65884652-65884671 | None:intergenic | 30.0% | |
| TTTATTCCGCTTGTTTATGT+CGG | + | chr3.4:65886376-65886395 | MS.gene05049:intron | 30.0% | |
| ! | CTACAAAATTGGTTTAGAAG+TGG | - | chr3.4:65885403-65885422 | None:intergenic | 30.0% |
| ! | TAGTTACTTATGTTTTCACC+TGG | + | chr3.4:65886857-65886876 | MS.gene05049:intron | 30.0% |
| ! | TCAAATGCAATTTGAAATGG+AGG | - | chr3.4:65886643-65886662 | None:intergenic | 30.0% |
| ! | TCAAATTGAGTTTGATGACT+TGG | + | chr3.4:65886343-65886362 | MS.gene05049:CDS | 30.0% |
| ! | TTTTACTCTATCCGAATATC+TGG | - | chr3.4:65886303-65886322 | None:intergenic | 30.0% |
| !! | AAAGTATTGGTTTGTATCTC+AGG | - | chr3.4:65885889-65885908 | None:intergenic | 30.0% |
| !! | AAGTATTGGTTTGTATCTCA+GGG | - | chr3.4:65885888-65885907 | None:intergenic | 30.0% |
| !! | GAACGTTTTGTTGATGTTTT+GGG | + | chr3.4:65885324-65885343 | MS.gene05049:intron | 30.0% |
| !! | TGAACGTTTTGTTGATGTTT+TGG | + | chr3.4:65885323-65885342 | MS.gene05049:intron | 30.0% |
| !! | TGGAACAAATGGATTATGTA+CGG | - | chr3.4:65886172-65886191 | None:intergenic | 30.0% |
| AAAATTGGCATCTCATTCAG+AGG | - | chr3.4:65886715-65886734 | None:intergenic | 35.0% | |
| AACCTTTCCTTATTCTCCAA+CGG | - | chr3.4:65885189-65885208 | None:intergenic | 35.0% | |
| AAGAAATTAGGGCAGATGAA+TGG | + | chr3.4:65885051-65885070 | MS.gene05049:CDS | 35.0% | |
| AATGGAACTATACATCAGGT+AGG | + | chr3.4:65886106-65886125 | MS.gene05049:intron | 35.0% | |
| ACATTGAGGTTAACAAGATC+CGG | - | chr3.4:65884625-65884644 | None:intergenic | 35.0% | |
| ACTTAGTAAACAGCATGTCA+AGG | + | chr3.4:65886957-65886976 | MS.gene05049:CDS | 35.0% | |
| AGAAATTAGGGCAGATGAAT+GGG | + | chr3.4:65885052-65885071 | MS.gene05049:CDS | 35.0% | |
| ATCTGGACTTTATACTCTTC+AGG | + | chr3.4:65886491-65886510 | MS.gene05049:CDS | 35.0% | |
| ATGATATTCCTAAACCACAG+GGG | - | chr3.4:65887132-65887151 | None:intergenic | 35.0% | |
| CAATCATGAACACCATATCA+GGG | - | chr3.4:65886149-65886168 | None:intergenic | 35.0% | |
| CATGATATTCCTAAACCACA+GGG | - | chr3.4:65887133-65887152 | None:intergenic | 35.0% | |
| CATTAGAGCTTCTGAATTTG+GGG | - | chr3.4:65887095-65887114 | None:intergenic | 35.0% | |
| CCATTAGAGCTTCTGAATTT+GGG | - | chr3.4:65887096-65887115 | None:intergenic | 35.0% | |
| GAAACAACTCAAGATACCAA+TGG | - | chr3.4:65885721-65885740 | None:intergenic | 35.0% | |
| GAGTAAAAGCTGAAACTGAA+CGG | + | chr3.4:65886315-65886334 | MS.gene05049:CDS | 35.0% | |
| TACTAACTGATGCTGAGAAA+TGG | + | chr3.4:65886525-65886544 | MS.gene05049:intron | 35.0% | |
| TCATGATATTCCTAAACCAC+AGG | - | chr3.4:65887134-65887153 | None:intergenic | 35.0% | |
| TCCATTAGAGCTTCTGAATT+TGG | - | chr3.4:65887097-65887116 | None:intergenic | 35.0% | |
| TCGCTAGTTGCTTCATTATT+TGG | + | chr3.4:65885583-65885602 | MS.gene05049:CDS | 35.0% | |
| TGAGTACTCTATATCTTTCC+AGG | + | chr3.4:65886005-65886024 | MS.gene05049:intron | 35.0% | |
| TGATTTAATTAAGTCAGGCC+AGG | - | chr3.4:65886878-65886897 | None:intergenic | 35.0% | |
| TGCATATTTCAATTCACGCA+TGG | - | chr3.4:65885933-65885952 | None:intergenic | 35.0% | |
| TGCTTCATTATTTGGTAAGC+AGG | + | chr3.4:65885591-65885610 | MS.gene05049:intron | 35.0% | |
| TTATTCAATCATAGCCACAG+AGG | - | chr3.4:65887002-65887021 | None:intergenic | 35.0% | |
| TTCAATCCGACATAAACAAG+CGG | - | chr3.4:65886385-65886404 | None:intergenic | 35.0% | |
| ! | AATTGAGTTTGATGACTTGG+AGG | + | chr3.4:65886346-65886365 | MS.gene05049:CDS | 35.0% |
| ! | ACAGCTTTTGCAGCTTTTAT+GGG | + | chr3.4:65885354-65885373 | MS.gene05049:intron | 35.0% |
| ! | CTTCGATGTTTTCCTTCAAT+CGG | - | chr3.4:65884495-65884514 | None:intergenic | 35.0% |
| ! | CTTTTTCCCTTCCAGATATT+CGG | + | chr3.4:65886289-65886308 | MS.gene05049:intron | 35.0% |
| ! | GATTTTGTTGCAGAGTAGTA+CGG | + | chr3.4:65885020-65885039 | MS.gene05049:CDS | 35.0% |
| ! | TGAAACAGGTGCTGTAAAAT+TGG | - | chr3.4:65886730-65886749 | None:intergenic | 35.0% |
| ! | TTTTGCAGCTTTTATGGGTA+AGG | + | chr3.4:65885359-65885378 | MS.gene05049:intron | 35.0% |
| !! | GATGTCACTTTGCAAAGTAT+TGG | - | chr3.4:65885902-65885921 | None:intergenic | 35.0% |
| !! | TGATGTTGTTACGTTGATTC+AGG | + | chr3.4:65884696-65884715 | MS.gene05049:CDS | 35.0% |
| !!! | CTGTCATTTTGGGTCATATT+TGG | + | chr3.4:65886786-65886805 | MS.gene05049:CDS | 35.0% |
| AAAAGCTGAAACTGAACGGT+TGG | + | chr3.4:65886319-65886338 | MS.gene05049:CDS | 40.0% | |
| AAAATCAAGTGCCCTTATCG+CGG | - | chr3.4:65885277-65885296 | None:intergenic | 40.0% | |
| AAGTTGTTGAAGTGGCTGTT+GGG | + | chr3.4:65884940-65884959 | MS.gene05049:CDS | 40.0% | |
| ACGGCGAATCAGAAGAAATT+AGG | + | chr3.4:65885039-65885058 | MS.gene05049:CDS | 40.0% | |
| ACTCTATCCGAATATCTGGA+AGG | - | chr3.4:65886299-65886318 | None:intergenic | 40.0% | |
| AGAAGACGAAGTTGTTGAAG+TGG | + | chr3.4:65884932-65884951 | MS.gene05049:CDS | 40.0% | |
| AGCTTCTGAATTTGGGGATT+GGG | - | chr3.4:65887089-65887108 | None:intergenic | 40.0% | |
| AGTATCCAAATCAACCCGAA+CGG | + | chr3.4:65884524-65884543 | MS.gene05049:CDS | 40.0% | |
| CACAAGCTTAAAGTTCTTGC+TGG | + | chr3.4:65884583-65884602 | MS.gene05049:CDS | 40.0% | |
| CGAGAAGATAGATAGGCTAA+TGG | + | chr3.4:65886088-65886107 | MS.gene05049:CDS | 40.0% | |
| CGGCGAATCAGAAGAAATTA+GGG | + | chr3.4:65885040-65885059 | MS.gene05049:CDS | 40.0% | |
| CTCTATCCGAATATCTGGAA+GGG | - | chr3.4:65886298-65886317 | None:intergenic | 40.0% | |
| CTTCAGGTATATATCCTCTG+TGG | + | chr3.4:65886985-65887004 | MS.gene05049:intron | 40.0% | |
| GAAAGGTTTGTGAAAGCAGA+AGG | + | chr3.4:65885201-65885220 | MS.gene05049:intron | 40.0% | |
| GAAATTAGGGCAGATGAATG+GGG | + | chr3.4:65885053-65885072 | MS.gene05049:CDS | 40.0% | |
| GACAATATTGGCGATCTTGA+TGG | + | chr3.4:65887152-65887171 | MS.gene05049:CDS | 40.0% | |
| GCAATCATGAACACCATATC+AGG | - | chr3.4:65886150-65886169 | None:intergenic | 40.0% | |
| GCATGTCAAGGATATACTTC+AGG | + | chr3.4:65886969-65886988 | MS.gene05049:CDS | 40.0% | |
| GGCTAATGGAACTATACATC+AGG | + | chr3.4:65886102-65886121 | MS.gene05049:CDS | 40.0% | |
| GGTGGCAATGTATAAGTCAA+AGG | + | chr3.4:65885095-65885114 | MS.gene05049:CDS | 40.0% | |
| GTACTCTATATCTTTCCAGG+TGG | + | chr3.4:65886008-65886027 | MS.gene05049:intron | 40.0% | |
| GTATCTCAGGGACAATTCAA+CGG | - | chr3.4:65885876-65885895 | None:intergenic | 40.0% | |
| GTTGGGGAAGATTAAGGTTA+GGG | + | chr3.4:65884957-65884976 | MS.gene05049:CDS | 40.0% | |
| TAAGCTTGTGAAGCTCTTCA+TGG | - | chr3.4:65884573-65884592 | None:intergenic | 40.0% | |
| TATCTCAGGGACAATTCAAC+GGG | - | chr3.4:65885875-65885894 | None:intergenic | 40.0% | |
| TCAACAAAACGTTCACAAGC+CGG | - | chr3.4:65885318-65885337 | None:intergenic | 40.0% | |
| TGAATTTGCGTTTGGATGAG+CGG | - | chr3.4:65884345-65884364 | None:intergenic | 40.0% | |
| TGAGAATGATGAACCTGCTA+AGG | + | chr3.4:65884744-65884763 | MS.gene05049:CDS | 40.0% | |
| TGATAAGGGATGTACAGTGT+CGG | - | chr3.4:65885660-65885679 | None:intergenic | 40.0% | |
| TGATATTCCTAAACCACAGG+GGG | - | chr3.4:65887131-65887150 | None:intergenic | 40.0% | |
| TGCTTGTGCAGAATTTGCAT+CGG | + | chr3.4:65884806-65884825 | MS.gene05049:CDS | 40.0% | |
| TGTTGGGGAAGATTAAGGTT+AGG | + | chr3.4:65884956-65884975 | MS.gene05049:CDS | 40.0% | |
| TTATAAGCAGTAAGCACAGC+TGG | - | chr3.4:65886684-65886703 | None:intergenic | 40.0% | |
| ! | ATGTTGTTTGTTGATGCCGT+TGG | + | chr3.4:65885170-65885189 | MS.gene05049:intron | 40.0% |
| ! | CCCAAATTCAGAAGCTCTAA+TGG | + | chr3.4:65887093-65887112 | MS.gene05049:intron | 40.0% |
| ! | GACAGCTTTTGCAGCTTTTA+TGG | + | chr3.4:65885353-65885372 | MS.gene05049:intron | 40.0% |
| ! | TATCTTGAGTTGTTTCGCGA+AGG | + | chr3.4:65885725-65885744 | MS.gene05049:intron | 40.0% |
| !! | CGAAGGAGAGATTAACTTGT+TGG | + | chr3.4:65885742-65885761 | MS.gene05049:intron | 40.0% |
| !! | TCAGTTGGTTGCTGTCATTT+TGG | + | chr3.4:65886775-65886794 | MS.gene05049:intron | 40.0% |
| !!! | AGGAGAGGACGAGTTTTTTT+AGG | - | chr3.4:65884465-65884484 | None:intergenic | 40.0% |
| !!! | CAGTTGGTTGCTGTCATTTT+GGG | + | chr3.4:65886776-65886795 | MS.gene05049:intron | 40.0% |
| !!! | GGACGAGTTTTTTTAGGGTT+CGG | - | chr3.4:65884459-65884478 | None:intergenic | 40.0% |
| !!! | GGAGAGGACGAGTTTTTTTA+GGG | - | chr3.4:65884464-65884483 | None:intergenic | 40.0% |
| AAGAGAGAGATCGATGTCGT+TGG | - | chr3.4:65884389-65884408 | None:intergenic | 45.0% | |
| ACAAGATCCGGATAAAGCTC+CGG | - | chr3.4:65884613-65884632 | None:intergenic | 45.0% | |
| ACGAGTGCGAGAAGATAGAT+AGG | + | chr3.4:65886081-65886100 | MS.gene05049:CDS | 45.0% | |
| ACTGATGCTGAGAAATGGCT+TGG | + | chr3.4:65886530-65886549 | MS.gene05049:intron | 45.0% | |
| AGTTGTTGAAGTGGCTGTTG+GGG | + | chr3.4:65884941-65884960 | MS.gene05049:CDS | 45.0% | |
| ATATTCCTAAACCACAGGGG+GGG | - | chr3.4:65887129-65887148 | None:intergenic | 45.0% | |
| ATTGGCATCTCATTCAGAGG+CGG | - | chr3.4:65886712-65886731 | None:intergenic | 45.0% | |
| CAATCGACGGAACAACATTG+AGG | - | chr3.4:65884639-65884658 | None:intergenic | 45.0% | |
| CTTGTCCTCTTTCCCTGATA+TGG | + | chr3.4:65886134-65886153 | MS.gene05049:intron | 45.0% | |
| CTTTCCAGGTGGAATCTTGA+GGG | + | chr3.4:65886019-65886038 | MS.gene05049:intron | 45.0% | |
| GAACAAGAAAGACCGGTATC+AGG | + | chr3.4:65885537-65885556 | MS.gene05049:CDS | 45.0% | |
| GAACACCATATCAGGGAAAG+AGG | - | chr3.4:65886142-65886161 | None:intergenic | 45.0% | |
| GAAGTTGTTGAAGTGGCTGT+TGG | + | chr3.4:65884939-65884958 | MS.gene05049:CDS | 45.0% | |
| GAGCTTCTGAATTTGGGGAT+TGG | - | chr3.4:65887090-65887109 | None:intergenic | 45.0% | |
| GATATTCCTAAACCACAGGG+GGG | - | chr3.4:65887130-65887149 | None:intergenic | 45.0% | |
| GCATCAACAAGAACCTTAGC+AGG | - | chr3.4:65884760-65884779 | None:intergenic | 45.0% | |
| GTCAAAGGATCCGAAGAGTT+CGG | + | chr3.4:65885110-65885129 | MS.gene05049:CDS | 45.0% | |
| GTTGATGCCGTTGGAGAATA+AGG | + | chr3.4:65885179-65885198 | MS.gene05049:intron | 45.0% | |
| TAAAGTTCTTGCTGGAGCAC+CGG | + | chr3.4:65884591-65884610 | MS.gene05049:CDS | 45.0% | |
| TCTTCCTCATCCGAACTCTT+CGG | - | chr3.4:65885123-65885142 | None:intergenic | 45.0% | |
| TCTTTCCAGGTGGAATCTTG+AGG | + | chr3.4:65886018-65886037 | MS.gene05049:intron | 45.0% | |
| TGCCGTTGGAGAATAAGGAA+AGG | + | chr3.4:65885184-65885203 | MS.gene05049:intron | 45.0% | |
| TTTCCAGGTGGAATCTTGAG+GGG | + | chr3.4:65886020-65886039 | MS.gene05049:intron | 45.0% | |
| ! | GCAGTATGCATCGGAGATTT+TGG | + | chr3.4:65884996-65885015 | MS.gene05049:CDS | 45.0% |
| ! | GCTTGTGGATTGTAGTGTGT+TGG | + | chr3.4:65884780-65884799 | MS.gene05049:CDS | 45.0% |
| ! | TCTTGATGGACCAGAAGAGA+AGG | + | chr3.4:65887166-65887185 | MS.gene05049:CDS | 45.0% |
| !! | GCAGAATTTGCATCGGTTGT+CGG | + | chr3.4:65884813-65884832 | MS.gene05049:CDS | 45.0% |
| !! | GGTGTCGTTGAATTTGCGTT+TGG | - | chr3.4:65884353-65884372 | None:intergenic | 45.0% |
| !!! | TTTTAGGGTTCGGTTGTCGA+CGG | - | chr3.4:65884449-65884468 | None:intergenic | 45.0% |
| !! | TATTTAAAAAAAAAAATGTT+TGG | + | chr3.4:65886591-65886610 | MS.gene05049:intron | 5.0% |
| AAATCAACCCGAACGGTTCG+CGG | + | chr3.4:65884531-65884550 | MS.gene05049:CDS | 50.0% | |
| AATTGAGGTGAAACCGGCTG+TGG | + | chr3.4:65884894-65884913 | MS.gene05049:CDS | 50.0% | |
| ACAAAACGTTCACAAGCCGG+AGG | - | chr3.4:65885315-65885334 | None:intergenic | 50.0% | |
| ACGGTTCGCGGATTCTGAAT+TGG | + | chr3.4:65884543-65884562 | MS.gene05049:CDS | 50.0% | |
| AGAGAGATCGATGTCGTTGG+TGG | - | chr3.4:65884386-65884405 | None:intergenic | 50.0% | |
| ATTAGGGCAGATGAATGGGG+TGG | + | chr3.4:65885056-65885075 | MS.gene05049:CDS | 50.0% | |
| CAAAACGTTCACAAGCCGGA+GGG | - | chr3.4:65885314-65885333 | None:intergenic | 50.0% | |
| CAAGAAAGACCGGTATCAGG+AGG | + | chr3.4:65885540-65885559 | MS.gene05049:CDS | 50.0% | |
| CCTCTAACTCCTCCTGATAC+CGG | - | chr3.4:65885552-65885571 | None:intergenic | 50.0% | |
| CGCCAGCGTATTATAAACCG+CGG | - | chr3.4:65884860-65884879 | None:intergenic | 50.0% | |
| GAGTTCGGATGAGGAAGAGA+TGG | + | chr3.4:65885125-65885144 | MS.gene05049:CDS | 50.0% | |
| GGTTCTTGTTGATGCGCTTG+TGG | + | chr3.4:65884765-65884784 | MS.gene05049:CDS | 50.0% | |
| GTCAGGCATTCGCAAATGAG+AGG | + | chr3.4:65886904-65886923 | MS.gene05049:intron | 50.0% | |
| GTGGCTGTTGGGGAAGATTA+AGG | + | chr3.4:65884951-65884970 | MS.gene05049:CDS | 50.0% | |
| TGCCGCGGTTTATAATACGC+TGG | + | chr3.4:65884855-65884874 | MS.gene05049:CDS | 50.0% | |
| TGCGATGACGAATTACCCTC+CGG | + | chr3.4:65885296-65885315 | MS.gene05049:intron | 50.0% | |
| TTCAGAATCCGCGAACCGTT+CGG | - | chr3.4:65884542-65884561 | None:intergenic | 50.0% | |
| TTCCTTCAATCGGCGTTCGA+AGG | - | chr3.4:65884485-65884504 | None:intergenic | 50.0% | |
| TTCGGATGAGGAAGAGATGG+TGG | + | chr3.4:65885128-65885147 | MS.gene05049:intron | 50.0% | |
| ! | GTCGTTGGTGGAGGATGAAA+CGG | - | chr3.4:65884374-65884393 | None:intergenic | 50.0% |
| ! | TTTTTCCCCCCCTGTGGTTT+AGG | + | chr3.4:65887121-65887140 | MS.gene05049:intron | 50.0% |
| !! | TTTGCATCGGTTGTCGGAGA+AGG | + | chr3.4:65884819-65884838 | MS.gene05049:CDS | 50.0% |
| ATCAAGTGCCCTTATCGCGG+AGG | - | chr3.4:65885274-65885293 | None:intergenic | 55.0% | |
| CCGGTATCAGGAGGAGTTAG+AGG | + | chr3.4:65885549-65885568 | MS.gene05049:CDS | 55.0% | |
| GGATCCGAAGAGTTCGGATG+AGG | + | chr3.4:65885116-65885135 | MS.gene05049:CDS | 55.0% | |
| GGTGGATGTGATGCTTCAGG+CGG | + | chr3.4:65885074-65885093 | MS.gene05049:CDS | 55.0% | |
| GTGGAATCTTGAGGGGCTCT+AGG | + | chr3.4:65886027-65886046 | MS.gene05049:CDS | 55.0% | |
| TCAATCGGCGTTCGAAGGAG+AGG | - | chr3.4:65884480-65884499 | None:intergenic | 55.0% | |
| TCAGAATCCGCGAACCGTTC+GGG | - | chr3.4:65884541-65884560 | None:intergenic | 55.0% | |
| TCGGTTGTCGGAGAAGGATG+CGG | + | chr3.4:65884825-65884844 | MS.gene05049:CDS | 55.0% | |
| TGCGTTTGGATGAGCGGTTG+CGG | - | chr3.4:65884339-65884358 | None:intergenic | 55.0% | |
| TGGGGTGGATGTGATGCTTC+AGG | + | chr3.4:65885071-65885090 | MS.gene05049:CDS | 55.0% | |
| TGTGCTCGCTCCTTCTCTTC+TGG | - | chr3.4:65887179-65887198 | None:intergenic | 55.0% | |
| ! | CTCCTTCGAACGCCGATTGA+AGG | + | chr3.4:65884480-65884499 | MS.gene05049:CDS | 55.0% |
| ! | GAGATCGATGTCGTTGGTGG+AGG | - | chr3.4:65884383-65884402 | None:intergenic | 55.0% |
| !! | GCGAACCGTTCGGGTTGATT+TGG | - | chr3.4:65884532-65884551 | None:intergenic | 55.0% |
| !! | TGGAGCACCGGAGCTTTATC+CGG | + | chr3.4:65884603-65884622 | MS.gene05049:CDS | 55.0% |
| !! | TTGTCGACGGCGTCGATTGT+GGG | - | chr3.4:65884436-65884455 | None:intergenic | 55.0% |
| !!! | GATTGCTTTTTCCCCCCCTG+TGG | + | chr3.4:65887115-65887134 | MS.gene05049:intron | 55.0% |
| CAAACCATCTCCGCCACAGC+CGG | - | chr3.4:65884910-65884929 | None:intergenic | 60.0% | |
| GAGCCCCTCAAGATTCCACC+TGG | - | chr3.4:65886026-65886045 | None:intergenic | 60.0% | |
| GCGTTTGGATGAGCGGTTGC+GGG | - | chr3.4:65884338-65884357 | None:intergenic | 60.0% | |
| GGATGCGGATGAGAATGCCG+CGG | + | chr3.4:65884840-65884859 | MS.gene05049:CDS | 60.0% | |
| GGATGTGATGCTTCAGGCGG+TGG | + | chr3.4:65885077-65885096 | MS.gene05049:CDS | 60.0% | |
| GGCGTATGCCTCCGCGATAA+GGG | + | chr3.4:65885263-65885282 | MS.gene05049:intron | 60.0% | |
| TGAGGTGAAACCGGCTGTGG+CGG | + | chr3.4:65884897-65884916 | MS.gene05049:CDS | 60.0% | |
| TGGCGTATGCCTCCGCGATA+AGG | + | chr3.4:65885262-65885281 | MS.gene05049:intron | 60.0% | |
| TTTGGATGAGCGGTTGCGGG+TGG | - | chr3.4:65884335-65884354 | None:intergenic | 60.0% | |
| !! | GACGGCGTCGATTGTGGGTT+GGG | - | chr3.4:65884431-65884450 | None:intergenic | 60.0% |
| !! | GTTGTCGACGGCGTCGATTG+TGG | - | chr3.4:65884437-65884456 | None:intergenic | 60.0% |
| ! | GAAACCGGCTGTGGCGGAGA+TGG | + | chr3.4:65884903-65884922 | MS.gene05049:CDS | 65.0% |
| !! | CGACGGCGTCGATTGTGGGT+TGG | - | chr3.4:65884432-65884451 | None:intergenic | 65.0% |
| GGATGAGCGGTTGCGGGTGG+TGG | - | chr3.4:65884332-65884351 | None:intergenic | 70.0% | |
| ! | TGAGCGGTTGCGGGTGGTGG+TGG | - | chr3.4:65884329-65884348 | None:intergenic | 70.0% |
| !! | CGGTTGCGGGTGGTGGTGGA+TGG | - | chr3.4:65884325-65884344 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 65884316 | 65887232 | 65884316 | ID=MS.gene05049 |
| chr3.4 | mRNA | 65884316 | 65887232 | 65884316 | ID=MS.gene05049.t1;Parent=MS.gene05049 |
| chr3.4 | exon | 65884316 | 65885146 | 65884316 | ID=MS.gene05049.t1.exon1;Parent=MS.gene05049.t1 |
| chr3.4 | CDS | 65884316 | 65885146 | 65884316 | ID=cds.MS.gene05049.t1;Parent=MS.gene05049.t1 |
| chr3.4 | exon | 65885520 | 65885604 | 65885520 | ID=MS.gene05049.t1.exon2;Parent=MS.gene05049.t1 |
| chr3.4 | CDS | 65885520 | 65885604 | 65885520 | ID=cds.MS.gene05049.t1;Parent=MS.gene05049.t1 |
| chr3.4 | exon | 65886027 | 65886123 | 65886027 | ID=MS.gene05049.t1.exon3;Parent=MS.gene05049.t1 |
| chr3.4 | CDS | 65886027 | 65886123 | 65886027 | ID=cds.MS.gene05049.t1;Parent=MS.gene05049.t1 |
| chr3.4 | exon | 65886304 | 65886367 | 65886304 | ID=MS.gene05049.t1.exon4;Parent=MS.gene05049.t1 |
| chr3.4 | CDS | 65886304 | 65886367 | 65886304 | ID=cds.MS.gene05049.t1;Parent=MS.gene05049.t1 |
| chr3.4 | exon | 65886456 | 65886512 | 65886456 | ID=MS.gene05049.t1.exon5;Parent=MS.gene05049.t1 |
| chr3.4 | CDS | 65886456 | 65886512 | 65886456 | ID=cds.MS.gene05049.t1;Parent=MS.gene05049.t1 |
| chr3.4 | exon | 65886779 | 65886816 | 65886779 | ID=MS.gene05049.t1.exon6;Parent=MS.gene05049.t1 |
| chr3.4 | CDS | 65886779 | 65886816 | 65886779 | ID=cds.MS.gene05049.t1;Parent=MS.gene05049.t1 |
| chr3.4 | exon | 65886909 | 65886990 | 65886909 | ID=MS.gene05049.t1.exon7;Parent=MS.gene05049.t1 |
| chr3.4 | CDS | 65886909 | 65886990 | 65886909 | ID=cds.MS.gene05049.t1;Parent=MS.gene05049.t1 |
| chr3.4 | exon | 65887143 | 65887232 | 65887143 | ID=MS.gene05049.t1.exon8;Parent=MS.gene05049.t1 |
| chr3.4 | CDS | 65887143 | 65887232 | 65887143 | ID=cds.MS.gene05049.t1;Parent=MS.gene05049.t1 |
| Gene Sequence |
| Protein sequence |
