Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050549.t1 | XP_013450550.1 | 93.8 | 241 | 15 | 0 | 1 | 241 | 1 | 241 | 1.20E-115 | 426 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050549.t1 | Q9SQ57 | 65.5 | 203 | 70 | 0 | 38 | 240 | 42 | 244 | 1.4e-82 | 307.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050549.t1 | A0A072U607 | 93.8 | 241 | 15 | 0 | 1 | 241 | 1 | 241 | 8.3e-116 | 426.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050549 | MS.gene065863 | 0.811898 | 5.56E-51 | -1.69E-46 |
| MS.gene050549 | MS.gene72268 | 0.80387 | 2.84E-49 | -1.69E-46 |
| MS.gene050549 | MS.gene94342 | 0.813414 | 2.59E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050549.t1 | MTR_7g115490 | 95.021 | 241 | 12 | 0 | 1 | 241 | 1 | 241 | 1.08e-175 | 483 |
| MS.gene050549.t1 | MTR_1g073640 | 65.766 | 222 | 76 | 0 | 10 | 231 | 8 | 229 | 7.19e-113 | 323 |
| MS.gene050549.t1 | MTR_1g032190 | 49.206 | 189 | 92 | 2 | 51 | 239 | 9 | 193 | 7.77e-58 | 182 |
| MS.gene050549.t1 | MTR_1g032190 | 49.206 | 189 | 92 | 2 | 51 | 239 | 41 | 225 | 5.29e-57 | 181 |
| MS.gene050549.t1 | MTR_1g032160 | 47.368 | 171 | 90 | 0 | 61 | 231 | 30 | 200 | 1.34e-53 | 172 |
| MS.gene050549.t1 | MTR_6g082510 | 48.485 | 66 | 29 | 2 | 178 | 239 | 19 | 83 | 1.55e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050549.t1 | AT5G55240 | 66.234 | 231 | 78 | 0 | 1 | 231 | 1 | 231 | 8.53e-116 | 331 |
| MS.gene050549.t1 | AT4G26740 | 62.025 | 237 | 90 | 0 | 2 | 238 | 3 | 239 | 1.66e-113 | 325 |
| MS.gene050549.t1 | AT2G33380 | 63.877 | 227 | 82 | 0 | 10 | 236 | 6 | 232 | 3.24e-107 | 309 |
| MS.gene050549.t1 | AT5G29560 | 72.674 | 172 | 47 | 0 | 3 | 174 | 2 | 173 | 9.45e-93 | 270 |
| MS.gene050549.t1 | AT2G33380 | 53.478 | 230 | 65 | 1 | 10 | 239 | 6 | 193 | 1.41e-81 | 243 |
| MS.gene050549.t1 | AT1G70670 | 44.828 | 174 | 96 | 0 | 66 | 239 | 19 | 192 | 5.69e-47 | 154 |
| MS.gene050549.t1 | AT1G23240 | 42.073 | 164 | 95 | 0 | 63 | 226 | 27 | 190 | 2.87e-44 | 148 |
| MS.gene050549.t1 | AT1G23240 | 42.073 | 164 | 95 | 0 | 63 | 226 | 1 | 164 | 4.91e-44 | 147 |
| MS.gene050549.t1 | AT1G23240 | 42.073 | 164 | 95 | 0 | 63 | 226 | 36 | 199 | 3.53e-43 | 145 |
| MS.gene050549.t1 | AT1G70680 | 41.860 | 172 | 100 | 0 | 62 | 233 | 16 | 187 | 2.95e-40 | 137 |
| MS.gene050549.t1 | AT1G23240 | 41.085 | 129 | 76 | 0 | 63 | 191 | 36 | 164 | 1.38e-31 | 114 |
| MS.gene050549.t1 | AT1G70680 | 38.926 | 149 | 91 | 0 | 85 | 233 | 5 | 153 | 2.29e-27 | 103 |
| MS.gene050549.t1 | AT1G23250 | 37.143 | 140 | 85 | 2 | 88 | 227 | 20 | 156 | 1.58e-23 | 93.6 |
| MS.gene050549.t1 | AT1G23250 | 37.143 | 140 | 85 | 2 | 88 | 227 | 50 | 186 | 5.52e-23 | 93.2 |
Find 61 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGGTTCATTCCTGCAAATT+TGG | 0.224564 | 7.4:+2249668 | MS.gene050549:intron |
| TCCCACATTGTTAATTTATC+AGG | 0.243212 | 7.4:-2249723 | None:intergenic |
| ACTTTCCTCTCAATAGTTAT+AGG | 0.278626 | 7.4:-2248779 | None:intergenic |
| GCAAAACATGGAAGTGATTC+AGG | 0.294311 | 7.4:+2249554 | MS.gene050549:CDS |
| CCATTCACATTCTCTTCATC+AGG | 0.295132 | 7.4:-2249054 | None:intergenic |
| GATAGATTACATACAAGGTT+TGG | 0.318555 | 7.4:-2248828 | None:intergenic |
| AACATTAGTTCCAAATTTGC+AGG | 0.347896 | 7.4:-2249678 | None:intergenic |
| AGCACCCCATTCAAATTTGC+TGG | 0.386318 | 7.4:-2250176 | None:intergenic |
| ATAGATTACATACAAGGTTT+GGG | 0.399797 | 7.4:-2248827 | None:intergenic |
| GGCTGCCAGCAAATTTGAAT+GGG | 0.402855 | 7.4:+2250171 | MS.gene050549:CDS |
| CACCGTTGCCATAGCTTCAT+TGG | 0.408373 | 7.4:-2248744 | None:intergenic |
| TTCAGATATGCCACGAGCCT+TGG | 0.417417 | 7.4:+2249026 | MS.gene050549:intron |
| GGGCTGCCAGCAAATTTGAA+TGG | 0.432205 | 7.4:+2250170 | MS.gene050549:intron |
| CATACAAGGTTTGGGAAGCT+TGG | 0.442806 | 7.4:-2248819 | None:intergenic |
| TGTATGTAGATTGGTAATAG+AGG | 0.445971 | 7.4:-2249518 | None:intergenic |
| AGCTTGGTATCCAAGTCATC+TGG | 0.461680 | 7.4:-2248803 | None:intergenic |
| AATAGTTATAGGTGCCTTGT+GGG | 0.465971 | 7.4:-2248768 | None:intergenic |
| AGTGTTGCATATGACTTCTT+CGG | 0.468149 | 7.4:+2249771 | MS.gene050549:CDS |
| TTTGTAGGATTCCGCGCACT+TGG | 0.478177 | 7.4:+2249313 | MS.gene050549:intron |
| GAGAATAATTGTAAATATGA+AGG | 0.489484 | 7.4:-2249353 | None:intergenic |
| TTCTTCGACATTGACAATGA+TGG | 0.493742 | 7.4:+2249129 | MS.gene050549:CDS |
| AACTGCATCCAATGAAGCTA+TGG | 0.500234 | 7.4:+2248736 | MS.gene050549:CDS |
| ATCATTGTCAATGTCGAAGA+AGG | 0.501135 | 7.4:-2249127 | None:intergenic |
| AATTAACAATGTGGGAGCTA+TGG | 0.503812 | 7.4:+2249730 | MS.gene050549:CDS |
| TAAGGGTTCAGTTGAAAAGA+TGG | 0.504169 | 7.4:+2250297 | MS.gene050549:CDS |
| GAGGAAAGTTCCAGATGACT+TGG | 0.510322 | 7.4:+2248793 | MS.gene050549:CDS |
| CAATAGTTATAGGTGCCTTG+TGG | 0.520049 | 7.4:-2248769 | None:intergenic |
| CTCTTCATCAGGGGCAACCA+AGG | 0.520881 | 7.4:-2249043 | None:intergenic |
| TAGATTGGTAATAGAGGTGA+AGG | 0.525611 | 7.4:-2249512 | None:intergenic |
| CTATGTCTCACAGGAAGAGT+AGG | 0.541985 | 7.4:-2249394 | None:intergenic |
| TCCTGATAAATTAACAATGT+GGG | 0.542529 | 7.4:+2249722 | MS.gene050549:CDS |
| CAGACATGTCATTGTGCTTG+TGG | 0.553839 | 7.4:-2249086 | None:intergenic |
| TTGCATATGACTTCTTCGGC+TGG | 0.555441 | 7.4:+2249775 | MS.gene050549:CDS |
| GTATTGTGCTAAAATGCGTA+AGG | 0.561557 | 7.4:+2250279 | MS.gene050549:CDS |
| CATTCACATTCTCTTCATCA+GGG | 0.569126 | 7.4:-2249053 | None:intergenic |
| ATGATGGTATTATCTACCCA+TGG | 0.571284 | 7.4:+2249145 | MS.gene050549:CDS |
| CTACCTTTGAATGTCTCCCA+TGG | 0.576642 | 7.4:-2249162 | None:intergenic |
| TATGGCAACGGTGGCCCACA+AGG | 0.576689 | 7.4:+2248754 | MS.gene050549:CDS |
| TACCTTTGAATGTCTCCCAT+GGG | 0.590395 | 7.4:-2249161 | None:intergenic |
| TTCCTGATAAATTAACAATG+TGG | 0.597710 | 7.4:+2249721 | MS.gene050549:CDS |
| CCGCGCACTTGGTTTCAATG+TGG | 0.601510 | 7.4:+2249324 | MS.gene050549:CDS |
| TCAGGGGCAACCAAGGCTCG+TGG | 0.602275 | 7.4:-2249036 | None:intergenic |
| CCTGATGAAGAGAATGTGAA+TGG | 0.606211 | 7.4:+2249054 | MS.gene050549:CDS |
| ATCCAATGAAGCTATGGCAA+CGG | 0.610134 | 7.4:+2248742 | MS.gene050549:CDS |
| AAGAGAATGTGAATGGCACA+TGG | 0.611966 | 7.4:+2249061 | MS.gene050549:CDS |
| TACCCATGGGAGACATTCAA+AGG | 0.617569 | 7.4:+2249159 | MS.gene050549:CDS |
| TAGGATAACTCATAGCTGCA+TGG | 0.630694 | 7.4:-2249375 | None:intergenic |
| TGATGGTATTATCTACCCAT+GGG | 0.631928 | 7.4:+2249146 | MS.gene050549:CDS |
| TATTGTGCTAAAATGCGTAA+GGG | 0.643436 | 7.4:+2250280 | MS.gene050549:CDS |
| ATTCACATTCTCTTCATCAG+GGG | 0.644239 | 7.4:-2249052 | None:intergenic |
| AGGCACCTATAACTATTGAG+AGG | 0.646998 | 7.4:+2248774 | MS.gene050549:CDS |
| GAGAATGTGAATGGCACATG+GGG | 0.649084 | 7.4:+2249063 | MS.gene050549:CDS |
| TCAGGTAGCTATGACACAGA+GGG | 0.655255 | 7.4:+2249572 | MS.gene050549:CDS |
| CAATGAAGCTATGGCAACGG+TGG | 0.658147 | 7.4:+2248745 | MS.gene050549:CDS |
| ATTCTAGCAAAAGATGAACA+AGG | 0.659497 | 7.4:+2250205 | MS.gene050549:CDS |
| GTAGCTATGACACAGAGGGA+AGG | 0.667852 | 7.4:+2249576 | MS.gene050549:CDS |
| CCACATTGAAACCAAGTGCG+CGG | 0.677447 | 7.4:-2249324 | None:intergenic |
| AATATACATAGAGCAAAACA+TGG | 0.677598 | 7.4:+2249542 | MS.gene050549:CDS |
| AGAGAATGTGAATGGCACAT+GGG | 0.679763 | 7.4:+2249062 | MS.gene050549:CDS |
| GCTGCCAGCAAATTTGAATG+GGG | 0.703780 | 7.4:+2250172 | MS.gene050549:CDS |
| TTCAGGTAGCTATGACACAG+AGG | 0.733473 | 7.4:+2249571 | MS.gene050549:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATTAAGAATATGATA+AGG | + | chr7.4:2248933-2248952 | MS.gene050549:intron | 10.0% |
| !!! | AGATTTTAAAAAATAATTCA+CGG | - | chr7.4:2250044-2250063 | None:intergenic | 10.0% |
| !! | TGAAAATAAGAATGAAATTA+AGG | - | chr7.4:2249289-2249308 | None:intergenic | 15.0% |
| !!! | CAAATTTGATGTTTTAATTT+GGG | + | chr7.4:2249003-2249022 | MS.gene050549:intron | 15.0% |
| !!! | TAGATGGTTAATTTAATTTA+TGG | + | chr7.4:2249888-2249907 | MS.gene050549:intron | 15.0% |
| !!! | TCAAATTTGATGTTTTAATT+TGG | + | chr7.4:2249002-2249021 | MS.gene050549:intron | 15.0% |
| !!! | TTGCTAAAACAATATTTTTT+AGG | + | chr7.4:2249649-2249668 | MS.gene050549:intron | 15.0% |
| !! | AAATAGATAGATTACATACA+AGG | - | chr7.4:2248836-2248855 | None:intergenic | 20.0% |
| !! | AGGTATTTCATTCAATATTA+AGG | - | chr7.4:2249269-2249288 | None:intergenic | 20.0% |
| !! | AGTAATTGTAACATAAATGA+AGG | - | chr7.4:2249423-2249442 | None:intergenic | 20.0% |
| !! | GAGAATAATTGTAAATATGA+AGG | - | chr7.4:2249356-2249375 | None:intergenic | 20.0% |
| !!! | TCTTATTTTCATGATTTTGT+AGG | + | chr7.4:2249298-2249317 | MS.gene050549:intron | 20.0% |
| !!! | TGTATATTTTGTATGTAGAT+TGG | - | chr7.4:2249530-2249549 | None:intergenic | 20.0% |
| ! | AATATACATAGAGCAAAACA+TGG | + | chr7.4:2249542-2249561 | MS.gene050549:CDS | 25.0% |
| ! | AGTTAATTCAGTTGAATAGA+TGG | - | chr7.4:2249975-2249994 | None:intergenic | 25.0% |
| ! | ATAAGAATAGGACACTAAAA+TGG | + | chr7.4:2248966-2248985 | MS.gene050549:intron | 25.0% |
| ! | ATAGATTACATACAAGGTTT+GGG | - | chr7.4:2248830-2248849 | None:intergenic | 25.0% |
| ! | GATATTAATTCATTCACCTA+AGG | - | chr7.4:2250131-2250150 | None:intergenic | 25.0% |
| ! | TCCTGATAAATTAACAATGT+GGG | + | chr7.4:2249722-2249741 | MS.gene050549:CDS | 25.0% |
| ! | TTCCTGATAAATTAACAATG+TGG | + | chr7.4:2249721-2249740 | MS.gene050549:CDS | 25.0% |
| !! | TTTTAGCACAATACTCAAAT+AGG | - | chr7.4:2250273-2250292 | None:intergenic | 25.0% |
| AACATTAGTTCCAAATTTGC+AGG | - | chr7.4:2249681-2249700 | None:intergenic | 30.0% | |
| AATTGAGTACAAGTAAGAGA+TGG | - | chr7.4:2249463-2249482 | None:intergenic | 30.0% | |
| ACTTTCCTCTCAATAGTTAT+AGG | - | chr7.4:2248782-2248801 | None:intergenic | 30.0% | |
| ATTCTAGCAAAAGATGAACA+AGG | + | chr7.4:2250205-2250224 | MS.gene050549:CDS | 30.0% | |
| CACCAATTATGCACAAAATA+TGG | - | chr7.4:2249200-2249219 | None:intergenic | 30.0% | |
| GATAGATTACATACAAGGTT+TGG | - | chr7.4:2248831-2248850 | None:intergenic | 30.0% | |
| GGAACGTTGAAAATAAGAAT+AGG | + | chr7.4:2248954-2248973 | MS.gene050549:intron | 30.0% | |
| GTAATTTCTATCCGTAATGA+TGG | + | chr7.4:2249797-2249816 | MS.gene050549:intron | 30.0% | |
| GTCTTAATCAAATTGACCTT+AGG | + | chr7.4:2250112-2250131 | MS.gene050549:intron | 30.0% | |
| TAACTTACACATGATTAACC+AGG | + | chr7.4:2249990-2250009 | MS.gene050549:intron | 30.0% | |
| TATTGTGCTAAAATGCGTAA+GGG | + | chr7.4:2250280-2250299 | MS.gene050549:CDS | 30.0% | |
| TCCCACATTGTTAATTTATC+AGG | - | chr7.4:2249726-2249745 | None:intergenic | 30.0% | |
| ! | CTCCATATTTTGTGCATAAT+TGG | + | chr7.4:2249195-2249214 | MS.gene050549:intron | 30.0% |
| ! | CTTTAAGTTAACCATTTGCA+GGG | + | chr7.4:2250150-2250169 | MS.gene050549:intron | 30.0% |
| ! | TCTTTAAGTTAACCATTTGC+AGG | + | chr7.4:2250149-2250168 | MS.gene050549:intron | 30.0% |
| ! | TGTATGTAGATTGGTAATAG+AGG | - | chr7.4:2249521-2249540 | None:intergenic | 30.0% |
| AAAGTGGATGACCATCATTA+CGG | - | chr7.4:2249811-2249830 | None:intergenic | 35.0% | |
| AATAGTTATAGGTGCCTTGT+GGG | - | chr7.4:2248771-2248790 | None:intergenic | 35.0% | |
| AATTAACAATGTGGGAGCTA+TGG | + | chr7.4:2249730-2249749 | MS.gene050549:CDS | 35.0% | |
| ACTTGATTCAGTTGAGTAGA+TGG | + | chr7.4:2249872-2249891 | MS.gene050549:intron | 35.0% | |
| AGTGTTGCATATGACTTCTT+CGG | + | chr7.4:2249771-2249790 | MS.gene050549:CDS | 35.0% | |
| ATAATTAACCAGATGTAGCG+AGG | - | chr7.4:2249840-2249859 | None:intergenic | 35.0% | |
| ATCATTGTCAATGTCGAAGA+AGG | - | chr7.4:2249130-2249149 | None:intergenic | 35.0% | |
| ATGATGGTATTATCTACCCA+TGG | + | chr7.4:2249145-2249164 | MS.gene050549:CDS | 35.0% | |
| ATTCACATTCTCTTCATCAG+GGG | - | chr7.4:2249055-2249074 | None:intergenic | 35.0% | |
| CATTCACATTCTCTTCATCA+GGG | - | chr7.4:2249056-2249075 | None:intergenic | 35.0% | |
| GTATTGTGCTAAAATGCGTA+AGG | + | chr7.4:2250279-2250298 | MS.gene050549:CDS | 35.0% | |
| TAAGGGTTCAGTTGAAAAGA+TGG | + | chr7.4:2250297-2250316 | MS.gene050549:CDS | 35.0% | |
| TAATTAACCAGATGTAGCGA+GGG | - | chr7.4:2249839-2249858 | None:intergenic | 35.0% | |
| TAGGTTCATTCCTGCAAATT+TGG | + | chr7.4:2249668-2249687 | MS.gene050549:intron | 35.0% | |
| TGATGGTATTATCTACCCAT+GGG | + | chr7.4:2249146-2249165 | MS.gene050549:CDS | 35.0% | |
| TTCTTCGACATTGACAATGA+TGG | + | chr7.4:2249129-2249148 | MS.gene050549:CDS | 35.0% | |
| ! | ACAAGTAAGAGATGGTAATG+AGG | - | chr7.4:2249455-2249474 | None:intergenic | 35.0% |
| ! | CAAGTAAGAGATGGTAATGA+GGG | - | chr7.4:2249454-2249473 | None:intergenic | 35.0% |
| ! | TAGATTGGTAATAGAGGTGA+AGG | - | chr7.4:2249515-2249534 | None:intergenic | 35.0% |
| AACTGCATCCAATGAAGCTA+TGG | + | chr7.4:2248736-2248755 | MS.gene050549:CDS | 40.0% | |
| AAGAGAATGTGAATGGCACA+TGG | + | chr7.4:2249061-2249080 | MS.gene050549:CDS | 40.0% | |
| AGAGAATGTGAATGGCACAT+GGG | + | chr7.4:2249062-2249081 | MS.gene050549:CDS | 40.0% | |
| AGGCACCTATAACTATTGAG+AGG | + | chr7.4:2248774-2248793 | MS.gene050549:CDS | 40.0% | |
| ATCCAATGAAGCTATGGCAA+CGG | + | chr7.4:2248742-2248761 | MS.gene050549:CDS | 40.0% | |
| CAATAGTTATAGGTGCCTTG+TGG | - | chr7.4:2248772-2248791 | None:intergenic | 40.0% | |
| CCATTCACATTCTCTTCATC+AGG | - | chr7.4:2249057-2249076 | None:intergenic | 40.0% | |
| CCTGATGAAGAGAATGTGAA+TGG | + | chr7.4:2249054-2249073 | MS.gene050549:CDS | 40.0% | |
| GCAAAACATGGAAGTGATTC+AGG | + | chr7.4:2249554-2249573 | MS.gene050549:CDS | 40.0% | |
| TACCTTTGAATGTCTCCCAT+GGG | - | chr7.4:2249164-2249183 | None:intergenic | 40.0% | |
| TAGGATAACTCATAGCTGCA+TGG | - | chr7.4:2249378-2249397 | None:intergenic | 40.0% | |
| TCGTATTTCTTCCACAGACA+TGG | + | chr7.4:2249486-2249505 | MS.gene050549:intron | 40.0% | |
| AGCACCCCATTCAAATTTGC+TGG | - | chr7.4:2250179-2250198 | None:intergenic | 45.0% | |
| AGCTTGGTATCCAAGTCATC+TGG | - | chr7.4:2248806-2248825 | None:intergenic | 45.0% | |
| CAGACATGTCATTGTGCTTG+TGG | - | chr7.4:2249089-2249108 | None:intergenic | 45.0% | |
| CATACAAGGTTTGGGAAGCT+TGG | - | chr7.4:2248822-2248841 | None:intergenic | 45.0% | |
| CTACCTTTGAATGTCTCCCA+TGG | - | chr7.4:2249165-2249184 | None:intergenic | 45.0% | |
| CTATGTCTCACAGGAAGAGT+AGG | - | chr7.4:2249397-2249416 | None:intergenic | 45.0% | |
| GAGAATGTGAATGGCACATG+GGG | + | chr7.4:2249063-2249082 | MS.gene050549:CDS | 45.0% | |
| GAGGAAAGTTCCAGATGACT+TGG | + | chr7.4:2248793-2248812 | MS.gene050549:CDS | 45.0% | |
| GCTGCCAGCAAATTTGAATG+GGG | + | chr7.4:2250172-2250191 | MS.gene050549:CDS | 45.0% | |
| GGCTGCCAGCAAATTTGAAT+GGG | + | chr7.4:2250171-2250190 | MS.gene050549:CDS | 45.0% | |
| TACCCATGGGAGACATTCAA+AGG | + | chr7.4:2249159-2249178 | MS.gene050549:CDS | 45.0% | |
| TCAGGTAGCTATGACACAGA+GGG | + | chr7.4:2249572-2249591 | MS.gene050549:CDS | 45.0% | |
| TGAAGGTAGCTATGTCTCAC+AGG | - | chr7.4:2249406-2249425 | None:intergenic | 45.0% | |
| TTCAGGTAGCTATGACACAG+AGG | + | chr7.4:2249571-2249590 | MS.gene050549:CDS | 45.0% | |
| TTCTATACCCTCGCTACATC+TGG | + | chr7.4:2249829-2249848 | MS.gene050549:intron | 45.0% | |
| TTGCATATGACTTCTTCGGC+TGG | + | chr7.4:2249775-2249794 | MS.gene050549:CDS | 45.0% | |
| ! | ACATGATTAACCAGGTGTCG+TGG | + | chr7.4:2249998-2250017 | MS.gene050549:intron | 45.0% |
| ! | AGAGATGGTAATGAGGGCAT+AGG | - | chr7.4:2249448-2249467 | None:intergenic | 45.0% |
| ! | CATGATTAACCAGGTGTCGT+GGG | + | chr7.4:2249999-2250018 | MS.gene050549:intron | 45.0% |
| ! | TGTAGCGAGGGTATAGAAAG+TGG | - | chr7.4:2249827-2249846 | None:intergenic | 45.0% |
| !!! | GCTGTGAGACGTTGTTTTGA+TGG | + | chr7.4:2250244-2250263 | MS.gene050549:CDS | 45.0% |
| CAATGAAGCTATGGCAACGG+TGG | + | chr7.4:2248745-2248764 | MS.gene050549:CDS | 50.0% | |
| CACCGTTGCCATAGCTTCAT+TGG | - | chr7.4:2248747-2248766 | None:intergenic | 50.0% | |
| CCACATTGAAACCAAGTGCG+CGG | - | chr7.4:2249327-2249346 | None:intergenic | 50.0% | |
| GGGCTGCCAGCAAATTTGAA+TGG | + | chr7.4:2250170-2250189 | MS.gene050549:intron | 50.0% | |
| GTAGCTATGACACAGAGGGA+AGG | + | chr7.4:2249576-2249595 | MS.gene050549:CDS | 50.0% | |
| TTCAGATATGCCACGAGCCT+TGG | + | chr7.4:2249026-2249045 | MS.gene050549:intron | 50.0% | |
| TTTGTAGGATTCCGCGCACT+TGG | + | chr7.4:2249313-2249332 | MS.gene050549:intron | 50.0% | |
| ! | TTTTGTACTCCCACGACACC+TGG | - | chr7.4:2250011-2250030 | None:intergenic | 50.0% |
| CCGCGCACTTGGTTTCAATG+TGG | + | chr7.4:2249324-2249343 | MS.gene050549:CDS | 55.0% | |
| CTCTTCATCAGGGGCAACCA+AGG | - | chr7.4:2249046-2249065 | None:intergenic | 55.0% | |
| GGTGAAGGTAGCCATGTCTG+TGG | - | chr7.4:2249500-2249519 | None:intergenic | 55.0% | |
| TTTGCTGGCAGCCCTGCAAA+TGG | - | chr7.4:2250164-2250183 | None:intergenic | 55.0% | |
| TATGGCAACGGTGGCCCACA+AGG | + | chr7.4:2248754-2248773 | MS.gene050549:CDS | 60.0% | |
| TCAGGGGCAACCAAGGCTCG+TGG | - | chr7.4:2249039-2249058 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 2248722 | 2250324 | 2248722 | ID=MS.gene050549 |
| chr7.4 | mRNA | 2248722 | 2250324 | 2248722 | ID=MS.gene050549.t1;Parent=MS.gene050549 |
| chr7.4 | exon | 2248722 | 2248836 | 2248722 | ID=MS.gene050549.t1.exon1;Parent=MS.gene050549.t1 |
| chr7.4 | CDS | 2248722 | 2248836 | 2248722 | ID=cds.MS.gene050549.t1;Parent=MS.gene050549.t1 |
| chr7.4 | exon | 2249031 | 2249180 | 2249031 | ID=MS.gene050549.t1.exon2;Parent=MS.gene050549.t1 |
| chr7.4 | CDS | 2249031 | 2249180 | 2249031 | ID=cds.MS.gene050549.t1;Parent=MS.gene050549.t1 |
| chr7.4 | exon | 2249320 | 2249405 | 2249320 | ID=MS.gene050549.t1.exon3;Parent=MS.gene050549.t1 |
| chr7.4 | CDS | 2249320 | 2249405 | 2249320 | ID=cds.MS.gene050549.t1;Parent=MS.gene050549.t1 |
| chr7.4 | exon | 2249503 | 2249597 | 2249503 | ID=MS.gene050549.t1.exon4;Parent=MS.gene050549.t1 |
| chr7.4 | CDS | 2249503 | 2249597 | 2249503 | ID=cds.MS.gene050549.t1;Parent=MS.gene050549.t1 |
| chr7.4 | exon | 2249671 | 2249796 | 2249671 | ID=MS.gene050549.t1.exon5;Parent=MS.gene050549.t1 |
| chr7.4 | CDS | 2249671 | 2249796 | 2249671 | ID=cds.MS.gene050549.t1;Parent=MS.gene050549.t1 |
| chr7.4 | exon | 2250171 | 2250324 | 2250171 | ID=MS.gene050549.t1.exon6;Parent=MS.gene050549.t1 |
| chr7.4 | CDS | 2250171 | 2250324 | 2250171 | ID=cds.MS.gene050549.t1;Parent=MS.gene050549.t1 |
| Gene Sequence |
| Protein sequence |
